dvi_2692

exon [dvir_GLEANR_14494:2]; CDS [Dvir\GJ14552-cds]; exon [dvir_GLEANR_14494:3]; CDS [Dvir\GJ14552-cds]; intron [Dvir\GJ14552-in]

##################################################---------------------------------------------------------------################################################## TGCAGAACTTGAAGTTTTTTTTCTTTACCATTGCCAATCGACTCTGTAAGGTAATATTTGAATTAGCTGCCGATTGGTTATCCGAACTAATATTTTCCACCACCTACTTGCAGCTGCTGAAAATTTCGCTGTTTGACAGGAAAAGCGTTGACTATTTTGTGCG ************************************************................((((.....(((.....(((........)))....))).....))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	V116 male body	SRR060664 9_males_carcasses_total	SRR060665 9_females_carcasses_total	SRR060667 160_females_carcasses_total	M028 head	M061 embryo	SRR060668 160x9_males_carcasses_total	SRR060672 9x160_females_carcasses_total	SRR060685 9xArg_0-2h_embryos_total	M027 male body	SRR060682 9x140_0-2h_embryos_total
....GAACTTGAAGTTTTTTTTCT...........................................................................................................................................	20	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GCTGAAAATTTCGCTGTT..............................	18	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................GTTTGACAGGAAAAGCGTTGA............	21	0	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................AAGTTGCTGAAAATTTCGCTGTT..............................	23	2	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................GCTGAAAATTTCGCTGTTTGACAGGA......................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
................TTTTTTCTTTCCCATTGCCAATC............................................................................................................................	23	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................TGTTTGACAGGAAAAGCGTTG.............	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TCGCTGTTTGACAGGAAAAG..................	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
............................................................CATTAGCTGCCGATGGGTT....................................................................................	19	2	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0
............................................................................................................................TTCGCTGTTTGACAGGAAAAGCG................	23	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
.....................TCTTTACCATTGCCAATCGACT........................................................................................................................	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
.............................ATTGCCAATCGACTCTGTAAGC................................................................................................................	22	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
.............................ATTGCCAATCGACTCTGTAAGCT...............................................................................................................	23	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................AGCTGCTGAAAATTTCGCTGTTTGAC..........................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................CAATCGACTCTGTAAGCTG..............................................................................................................	19	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
.............GTTTTTTTTCTTTACCATTGCC................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
...................TTTCTTTACCATTGCCAATCGA..........................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
....GAACTTGAAGTTTTTTTTCTT..........................................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0
......................CTTTACCATTGCCAATCGAC.........................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AAATTTCGCTGTTTGACAGG.......................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................TGCTGAAAATTTCGCTGTTTGACAGGA......................	27	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
...............TTTTTTTCTTTACCATTGCCAAT.............................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................ATTTCGCTGTTTGACAGGAAAAGCGT...............	26	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
...........................CCATTGCCAATCGACTCTGTA...................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CGCTGTTTGACAGGAAAAGCGTTGA............	25	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0
......................CTTTACCATTGCCAATCGACTCTGTA...................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................CGCTGTTTGACAGGAAAAGC.................	20	0	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0
................................GCCAATCGACTCTGTAAGC................................................................................................................	19	1	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................AAAATGTCGCTGTTTGAC..........................	18	1	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................AAAATGTCGCTGTTTGAGA.........................	19	2	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................AAATGTCGCTGTTTGAGA.........................	18	2	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	1

ACGTCTTGAACTTCAAAAAAAAGAAATGGTAACGGTTAGCTGAGACATTCCATTATAAACTTAATCGACGGCTAACCAATAGGCTTGATTATAAAAGGTGGTGGATGAACGTCGACGACTTTTAAAGCGACAAACTGTCCTTTTCGCAACTGATAAAACACGC ************************************************................((((.....(((.....(((........)))....))).....))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060666 160_males_carcasses_total	V116 male body	V047 embryo	SRR060660 Argentina_ovaries_total
.........................................................................................TAGAAAAAGTGGTGGTTGAAC.....................................................	21	3	4	0.25	1	1	0	0	0
..................................................................................................TGGTGGGTGAACCTCGACTA.............................................	20	3	12	0.08	1	0	1	0	0
............................................................................CAATAGGGTTGATCATAA.....................................................................	18	2	17	0.06	1	0	0	1	0
..................................................................................................TGGTGGGTGAACCTCGACG..............................................	19	2	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_12822:3339154-3339316 +	dvi_2692	TGCAGAAC-------TTGAAGTTTTTTTTCTTTACCATTGCCAATCGACTCTGTAAGGTA----A------T------------ATTTGAATTAGCTGCCGATTGG---------------T-----TATC-------------------CGAACT-AA---------------TATTTTCC---ACCA------------------CCTACTTGCAGCTGCTGAAAATTTCGCTGTTTGACAGGAAAAGCGTTGACTATTTTGTGCG
droMoj3	scaffold_6540:16659776-16659943 +		TGATGAAC-------CTCAAGTTTTTGCTATTCCAAACTGCACAGAAACTGTTTAAGGTA----GA-GGATCTCTAAT---TTCAT----TT--ATTG--------------------------C-TGAT-------------T-------------------TGGCTTACAAATTA--TGTTTATACT------------------TTCCCTTGCAGGCTTTGAAAATCTCACTCTTTGATAAGAAAAGCACAAACTATTTTGTGCG
droGri2	scaffold_14906:981405-981565 +		TGATGAAC-------ATAAAGTTTTTGCTCTTCATAAACGCAAGTTGGCTTTTTAAGGTG----CGCTCACCAAT--------------------TTACTAACTAA---------------A-----TATT-------------------CAGTCT-AA---------------TCCTTTCA---GTCT------------------CCCGATTGTAGTTTTTTAAATTATCATTGTTTGATAAGAAGAGCACAAACTACTTTGTGCG
droWil2	scf2_1100000004513:2619565-2619718 -		AGCAACTG-------TACAAGTTCATGCTATCCACGACTATGCCCTGGCTTTTTAAGGTG----AGTTGAGAGTTT-------------------------------------------TTGTTT-TTTAC-------------------ATA-CCTTTTAAT-----------C----------AAAC------------------GTCGTCTATAGCTTCTTGGATTCCAAATTTTTGATGGCGAAAAAACAGAGTTCTTCATACG
dp5	2:5452457-5452615 -		TGCAGAAC-------CTAAAGTTTATGTTATTCTTTACACTAAAGTCGCTCAATAAGGTT----AGTAAATCAATA-------------------------------------------ATATAT-CAATC-------------------TAGACC-AATGAT-----------CTA--ATA---CCCA------------------TCTCTTTGCAGTATATCAAGGTCGATCTCTTTGACAAGAAGAGCACTGAGTATTTTGTGCG
droPer2	scaffold_19:1168694-1168852 -		TGCAGAAC-------ATAAAGTTTATGTTATTCTTTGCACTAAAGTCGCTCCATAAGGTT----AGTAAATCAATA-------------------------------------------ATATAT-CAATC-------------------TAGACC-AATGAT-----------CTA--ATA---CCCA------------------TCTCTTTGCAGTATATCAAGGTCGATCTCTTTGACAAGAAGAGCACCGAGTACTTTGTGCG
droAna3	scaffold_13266:3256856-3257012 -		TACAGCTC-------CTTAAGTTCTTCTTGCTTGCTATCATGCCGACCTTGTTTAATGTG----AGCCACTA-CAA-----------------ACTTA--------------------------T-CGAT------A--------------------------AGATTCATACCTAA--TTT---TTGA------------------GCTCCCTTTAGTTCTTCAAAATGACCATTTTTGAGAGCAGCAAAGTGGATTACTTTGTGCG
droBip1	scf7180000396721:765324-765482 -		CCCAGAAC-------TTAAAGTTTTTGATATTCTTTAGCTTAAAAAAACTGTATAGGGTT----TGTAAAATACAT--------------TT----TT--------------------------CGCATA---------------------------------GTACTTTTTGACTATTTTT---TTTC------------------TCCTTTTTTAGATTTTAAAAATTGAACTTTTCGACAGAAAGAGCACACAGTACTTTGTACG
droKik1	scf7180000302475:289853-290026 -		TGCAGAAC-------ATAAAGTTCTTATTATTCTTTAGTCTGAAGAAGCTGAACAAGGTA----TGTGTATAAAT--------------------TTA--AACTAAAGCTTATGAGTTTATGGTT-AATCC-------------------CTC-AA------------------TTA-TTCT---AAAA------------------TCATCTTGCAGATTCTTAAAATGGAGCTTTTCGATAGAAAGAGTACCCAGTACTTTGTGCG
droFic1	scf7180000453812:856904-857069 +		GGCAGAAC-------ATTAAGTTCATGTTGTTCTTCACATGGAAAAAACTTAGCAAGGTT----TGAAGAACTTTCCA---------------AGCGATTATTA---------------AAATCT-GAACT-------------------AAAAA--------------------CATTTAT---TAAT------------------TACTTTTTCAGATCCTGAAGTTGGAGCTCTTTGATAAAAAGAGCACTCAATATTTCGTGCG
droEle1	scf7180000490731:40138-40297 +		TTCAGAAC-------ATTAAGTTCATGCTCTTTTTCGCATTGAAACATCTCAATAAGGTT----GGTGTAACATTC------------AAAT---CTT---------------------------T------CCGAAG---ATG----------TT-GCTCA------------TGT--TGT---TCGT------------------TACTTTTCTAGATCCTAAAAGTGGAGATCTTTGACAAAAAGAGCACTCAGTACTTTGTGCG
droRho1	scf7180000779932:302316-302475 -		TTCAGTTC-------TTCAAATTTACGCTGTCCGCAATGATGCCTAAACTTTTTACTGTA----AGTCTTGCTTTT------------AAAA----TG--------------------------CTCTTA------A-------------------------------------------------GCAATCCTTTTAAATCTCCGGTATTTCCTCAGTTCTTCAATATGAAAGTCTTCGATGGCAAGAAAGTTGATTATTTCGTTAG
droBia1	scf7180000302292:3121027-3121195 +		CGCGGAATGCAGTTCTTTAAGTTCATGATGGCCTCAATTATGCCAAAAATATTTAATGTGAGTCCACTTA-G------------AAGT--------CG--------------------------T-CTAT------A-----------------TT-------GTATCTTTTTGTAATATCG---GTCT------------------TCTTTTTTCAGTTCCTTGGACTTACAATCTTTGAAGCAGGAAAAGTTGAGTACTTTGTTCG
droTak1	scf7180000415366:312382-312540 +		TGCAAAAC-------ATAAAGTTTATGTTGTTCTTCGCATTGAAGAGTCTCAATAAGGTT----GGTAGAATATTT-------------------------------------------AGGGAA-TAGCAC---------A----------GACC-CTATAA-----------ACA--TAT---TCCT------------------TTTCTTTGAAGGTCCTGAAAGTGGAGCTTTTTGACAAGAAGAGTACTCAGTATTTCGTGCG
droEug1	scf7180000409615:475135-475295 -		TGCAAAAT-------GTTAAGTTCATGTTGTTCTTCGCATTGAAGAGTCTGAATAAGGTT----TGTTGAGAAA-------------A------GATA---------------------------T------CAGAAGAATATACT------AA----TATAA-----------AGA--GAA---ATTT------------------TATTTTTACAGATTCTGAAAGTTGAGCTATTTGATAAAAAGAGCACTCAGTATTTCGTGCG
dm3	chr3R:8229981-8230141 -		TGCAGAGC-------ATGAAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAATAAGGTT----GGCACAGCATACAC---------------ACATA---------------------------T------CAAAAAAATATATT------CCT-------------------TAA--TTT---TAAT------------------AATCCTTGTAGATCCTTAAGGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCG
droSim2	2r:3868154-3868317 -		TTCAGTTC-------TTCAAGTTCATGCTGTCCGCCTTGGTGCCAAAGATTTTCAGTGTAAGCTTGTTAA-T------------ATTTGATG----TG--------------------------CACTGAAT---------A----------GATT-ATATAT-----------TCA--AGA---TATT------------------GTCCTTTTCAGCTTCTGAAGCTTTCTATTTTCGACTCCGCCAAGGTTGATTACTTTGCCCG
droSec2	scaffold_1:687843-688006 -		TTCAGTTC-------TTCAAGTTCATGCTGTCCGCCTTGGTGCCAAAGATTTTCAGTGTAAGCTTGTTAA-T------------ATTTGATG----TG--------------------------CACTGAAT---------A----------GATT-ATATAT-----------TCA--AGA---TATT------------------GTCCTTTTCAGCTTCTGAAGCTTTCTATTTTCGACCCCGCCAAGGTTGATTACTTTTCTCG
droYak3	3R:12549446-12549613 -		TGCAGAAC-------ATGAAGTTCATGTTGTTCTTCGCTTTGAAGAGTCTTAATAAGGTT----GGCACAGCACTCAC---------------ACACA---------------------------T------CAGAAGAACATATTGATTAAAAC--------------------GAATTGT---TTCT------------------TTTCCATGTAGATCCTTAAGGTCGAGCTTTTCGATAAGAAAAGCACTCAGTATTTCGTGCG
droEre2	scaffold_4770:13393394-13393563 +		TGCAGAAC-------ATGAAGTTCATGTTGTTCTTTGCGTTGAAGAGTCTTAATAAGGTT----GGCAAAGCATTCACATATATAT----------------------------------------------TAGAAGAATATATT------GATT-AAACAA-----------TAA--TGT---TAAT------------------TTTCCACGTAGATCCTTAAGGTCGAGCTTTTCGATAAGAAAAGCACTCAGTATTTCGTGCG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

TGCAGAAC-------TTGAAGTTTTTTTTCTTTACCATTGCCAATCGACTCTGTAAGGTA----A------T------------ATTTGAATTAGCTGCCGATTGG---------------T-----TATC-------------------CGAACT-AA---------------TATTTTCC---ACCA------------------CCTACTTGCAGCTGCTGAAAATTTCGCTGTTTGACAGGAAAAGCGTTGACTATTTTGTGCG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....GAAC-------TTGAAGTTTTTTTTCT.............................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCTGAAAATTTCGCTGTT..............................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GTTTGACAGGAAAAGCGTTGA............	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................GCTGAAAATTTCGCTGTTTGACAGGA......................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TGTTTGACAGGAAAAGCGTTG.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................TCGCTGTTTGACAGGAAAAG..................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTCGCTGTTTGACAGGAAAAGCG................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TCTTTACCATTGCCAATCGACT..........................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................ATTGCCAATCGACTCTGTAAGC..................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGCTGCTGAAAATTTCGCTGTTTGAC..........................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTTTTTTTTCTTTACCATTGCC..................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTTCTTTACCATTGCCAATCGA............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GAAC-------TTGAAGTTTTTTTTCTT............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CTTTACCATTGCCAATCGAC...........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AAATTTCGCTGTTTGACAGG.......................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TGCTGAAAATTTCGCTGTTTGACAGGA......................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TTTTTTTCTTTACCATTGCCAAT...............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................ATTTCGCTGTTTGACAGGAAAAGCGT...............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CCATTGCCAATCGACTCTGTA.....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................CGCTGTTTGACAGGAAAAGCGTTGA............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CTTTACCATTGCCAATCGACTCTGTA.....................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CGCTGTTTGACAGGAAAAGC.................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................GCCAATCGACTCTGTAAGC..................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGATGAAC-------CTCAAGTTTTTGCTATTCCAAACTGCACAGAAACTGTTTAAGGTA----GA-GGATCTCTAAT---TTCAT----TT--ATTG--------------------------C-TGAT-------------T-------------------TGGCTTACAAATTA--TGTTTATACT------------------TTCCCTTGCAGGCTTTGAAAATCTCACTCTTTGATAAGAAAAGCACAAACTATTTTGTGCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................TTTTGCTATTCCAAACTGCA..................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................CTTTGAAAATCTCACTCTTTG............................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................ATCTCACTCTTTGATAAGAAAAGCACA..............	27	1	1.00	1	1	0	0	0	0	0
...TGAAC-------CTCAAGTTTTTGCT...............................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.............................ATTCCAAACTGCACAGAAACTG.........................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................TGAAAATCTCACTCTTTGAT..........................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................CTCACTCTTTGATAAGAAA....................	19	1	1.00	1	1	0	0	0	0	0
....................GTTTTTGCTATTCCAAACTGCACA................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................ATTCCAAACTGCACAGAAACTGT........................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................TTTGCTATTCCAAACTGCACA................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................TCTCACTCTTTGATAAGAAA....................	20	1	1.00	1	1	0	0	0	0	0
..............................TTCCAAACTGCACAGAAACTGTT.......................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........................CTATTCCAAACTGCACAGA..............................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................TCACTCTTTGATAAGAAAA...................	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................TTGAAAATCTCACTCTTTGATAAGAA.....................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................CTCACTCTTTGATAAGAAAA...................	20	1	1.00	1	1	0	0	0	0	0
...................................AACTGCACAGAAACTGTTTAAGGC.................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.GATGAAC-------CTCAAGTTTTTGCT...............................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................CAAGTTTTTGCTATTCCAAACTGCA..................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................GAAAATCTCACTCTTTGAT..........................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................GAAAATCTCACTCTTTGATAAGAAAAGC.................	28	1	1.00	1	1	0	0	0	0	0
....GAAC-------CTCAAGTTTTTGCTATTCC..........................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTTGATAAGAAAAGCACAAA............	21	1	1.00	1	1	0	0	0	0	0
..............................TTCCAAACTGCACAGAAACTGTTT......................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................CTCACTCTTTGATAAGAAAAG..................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................AATCTCACTCTTTGATAAGAAAAGC.................	25	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................ATCTCACTCTTTGATAAGAAAAG..................	23	1	1.00	1	1	0	0	0	0	0

droGri2

TGATGAAC-------ATAAAGTTTTTGCTCTTCATAAACGCAAGTTGGCTTTTTAAGGTG----CGCTCACCAAT--------------------TTACTAACTAA---------------A-----TATT-------------------CAGTCT-AA---------------TCCTTTCA---GTCT------------------CCCGATTGTAGTTTTTTAAATTATCATTGTTTGATAAGAAGAGCACAAACTACTTTGTGCG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................................................................................................................................GTTTGATAAGAAGAGCACA..............	19	1	1.00	1	0	1
................................................................................................................................................................................................................................AAATTATCATTGTTTGATAAGAAGAGCA................	28	1	1.00	1	0	1
................................................................................................................................................................................................................................AAATTATCATTGTTTGATAAGAAGAGCAC...............	29	1	1.00	1	0	1
........................................................................................................................................................................................................................................ATTGTTTGATAAGAAGAGCAC...............	21	1	1.00	1	0	1

droWil2

AGCAACTG-------TACAAGTTCATGCTATCCACGACTATGCCCTGGCTTTTTAAGGTG----AGTTGAGAGTTT-------------------------------------------TTGTTT-TTTAC-------------------ATA-CCTTTTAAT-----------C----------AAAC------------------GTCGTCTATAGCTTCTTGGATTCCAAATTTTTGATGGCGAAAAAACAGAGTTCTTCATACG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................CCTTTTAAT-----------C----------AAAC------------------GTCGTCT......................................................	21	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................................................TTCCAAATTTTTGATGGCGAAAAAACA..............	27	1	1.00	1	0	1	0	0	0
AGCAACTG-------TACAAGTTCATGCT...............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................TA-CCTTTTAAT-----------C----------AAAC------------------GTCGTCTATAG..................................................	27	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................GATTCCAAATTTTTGATGGCGA.....................	22	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................CTTGGATTCCAAATTTTTGATGGC.......................	24	1	1.00	1	0	0	1	0	0
..........................GCTATCCACGACTATGCCCT..............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................CCAAATTTTTGATGGCGAAA...................	20	1	1.00	1	0	0	1	0	0
..........................GCTATCCACGACTATGCCCTG.............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0

dp5

TGCAGAAC-------CTAAAGTTTATGTTATTCTTTACACTAAAGTCGCTCAATAAGGTT----AGTAAATCAATA-------------------------------------------ATATAT-CAATC-------------------TAGACC-AATGAT-----------CTA--ATA---CCCA------------------TCTCTTTGCAGTATATCAAGGTCGATCTCTTTGACAAGAAGAGCACTGAGTATTTTGTGCG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................................................................TGACAAGAAGAGCACTGA............	18	1	3.00	3	0	1	0	0	0	0	0	0	0	2
.............................ATTCTTTACACTAAAGTCGCTC.........................................................................................................................................................................................................................	22	1	3.00	3	0	2	1	0	0	0	0	0	0	0
...................................TACACTAAAGTCGCTCAATAAGT..................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................GATCTCTTTGACAAGAAGA...................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TTGACAAGAAGAGCACTGA............	19	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.........................................................................................................................................................................................................................GTATATCAAGGTCGATCTCT...............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GTATATCAAGGTCGATCTCTTT.............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CGATCTCTTTGACAAGAAG....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CAAGGTCGATCTCTTTGACAAGAA.....................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ATCAAGGTCGATCTCTTTGACAAGAA.....................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GTATATCAAGGTCGATCTCTT..............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................ATGTTATTCTTTACACTAAAGTCGCTC.........................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................CACTAAAGTCGCTCAATAAG...................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AAGAAGAGCACTGAGTATTT......	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................AAGAAGAGCACTGAGTATTTTG....	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CTTTGACAAGAAGAGCACTGA............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................TATGTTATTCTTTACACTAAAGTCGCT..........................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GATCTCTTTGACAAGAAGAGCACT..............	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................ATATCAAGGTCGATCTCTTT.............................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................CTTTACACTAAAGTCGCTCAATAAGT..................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGCAGAAC-------ATAAAGTTTATGTTATTCTTTGCACTAAAGTCGCTCCATAAGGTT----AGTAAATCAATA-------------------------------------------ATATAT-CAATC-------------------TAGACC-AATGAT-----------CTA--ATA---CCCA------------------TCTCTTTGCAGTATATCAAGGTCGATCTCTTTGACAAGAAGAGCACCGAGTACTTTGTGCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................ATATCAAGGTCGATCTCT...............................	18	1	21.00	21	21	0	0	0	0	0
.........................................................................................................................................................................................................................GTATATCAAGGTCGATCTCT...............................	20	1	4.00	4	4	0	0	0	0	0
.........................................................................................................................................................................................................................GTATATCAAGGTCGATCT.................................	18	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................................................................................................................TCGATCTCTTTGACAAGAAGAGCACCG.............	27	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................CAAGGTCGATCTCTTTGACAAGAA.....................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................AGTATATCAAGGTCGATCT.................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................CAAGGTCGATCTCTTTGAC..........................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................ATATCAAGGTCGATCTCC...............................	18	1	1.00	1	1	0	0	0	0	0
......................................ACTAAAGTCGCTCCATAAGT..................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................CGATCTCTTTGACAAGAA.....................	18	1	1.00	1	0	0	1	0	0	0

droAna3

TACAGCTC-------CTTAAGTTCTTCTTGCTTGCTATCATGCCGACCTTGTTTAATGTG----AGCCACTA-CAA-----------------ACTTA--------------------------T-CGAT------A--------------------------AGATTCATACCTAA--TTT---TTGA------------------GCTCCCTTTAGTTCTTCAAAATGACCATTTTTGAGAGCAGCAAAGTGGATTACTTTGTGCG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................ATGACCATTTTTGAGAGCAGC....................	21	1	3.00	3	0	2	0	0	1	0
...................................................................................................................................................................................................................................ATGACCATTTTTGAGAGCAGCAAAGT...............	26	1	2.00	2	0	0	0	0	2	0
...............................................................................................................................................................................................................................CAAAATGACCATTTTTGAGAGC.......................	22	1	2.00	2	0	1	0	0	1	0
................................................................................................................................................................................................................................AAAATGACCATTTTTGAGAGC.......................	21	1	2.00	2	0	1	0	0	0	1
..........................CTTGCTTGCTATCATGCC................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................GAGCAGCAAAGTGGATTA.........	18	1	1.00	1	0	1	0	0	0	0
...............CTTAAGTTCTTCTTGCTTGCC........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................AAAATGACCATTTTTGAGAGCAGCAAA.................	27	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................ATTTTTGAGAGCAGCAAAGTGGATTACT.......	28	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................GACCATTTTTGAGAGCAGCAAAGT...............	24	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................CTTCAAAATGACCATTTTTGAGAGC.......................	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................ATTTTTGAGAGCAGCAAAGC...............	20	1	1.00	1	0	1	0	0	0	0
.......................CTTCTTGCTTGCTATCATGCC................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................GCAGCAAAGTGGATTACTTT.....	20	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................AATGACCATTTTTGAGAGC.......................	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................AAAATGACCATTTTTGAGAG........................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................AAATGACCATTTTTGAGAGCAGCAAAGT...............	28	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................AAAATGACCATTTTTGAGAGCAGC....................	24	1	1.00	1	0	1	0	0	0	0
.................TAAGTTCTTCTTGCTTGCTATCATGCC................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
...............CTTAAGTTCTTCTTGCTTGCTATCATGC.................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.....................TTCTTCTTGCTTGCTATCATGCC................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................GACCATTTTTGAGAGCAGCAAA.................	22	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................TTTGAGAGCAGCAAAGTGGATTACTTT.....	27	1	1.00	1	0	0	1	0	0	0
.........................TCTTGCTTGCTATCATGCCGA..............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................CTA-CAA-----------------ACTTA--------------------------T-CGAT------A--------------------------AGAT.....................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................ATTTTTGAGAGCAGCAAAGT...............	20	1	1.00	1	0	0	0	0	1	0
............................TGCTTGCTATCATGCCGACCT...........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....CTC-------CTTAAGTTCTTCTTGCTTGCTATCA....................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................TTTTGAGAGCAGCAAAGT...............	18	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................ATGACCATTTTTGAGAGCAGCAAAGTG..............	27	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................GACCATTTTTGAGAGCAGCAA..................	21	1	1.00	1	0	1	0	0	0	0
..................AAGTTCTTCTTGCTTGCTATCATGCC................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
......TC-------CTTAAGTTCTTCTTGCTTGC.........................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................GAGAGCAGCAAAGTGGATTACTTT.....	24	1	1.00	1	0	1	0	0	0	0

droBip1

CCCAGAAC-------TTAAAGTTTTTGATATTCTTTAGCTTAAAAAAACTGTATAGGGTT----TGTAAAATACAT--------------TT----TT--------------------------CGCATA---------------------------------GTACTTTTTGACTATTTTT---TTTC------------------TCCTTTTTTAGATTTTAAAAATTGAACTTTTCGACAGAAAGAGCACACAGTACTTTGTACG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCAGAAC-------ATAAAGTTCTTATTATTCTTTAGTCTGAAGAAGCTGAACAAGGTA----TGTGTATAAAT--------------------TTA--AACTAAAGCTTATGAGTTTATGGTT-AATCC-------------------CTC-AA------------------TTA-TTCT---AAAA------------------TCATCTTGCAGATTCTTAAAATGGAGCTTTTCGATAGAAAGAGTACCCAGTACTTTGTGCG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGCAGAAC-------ATTAAGTTCATGTTGTTCTTCACATGGAAAAAACTTAGCAAGGTT----TGAAGAACTTTCCA---------------AGCGATTATTA---------------AAATCT-GAACT-------------------AAAAA--------------------CATTTAT---TAAT------------------TACTTTTTCAGATCCTGAAGTTGGAGCTCTTTGATAAAAAGAGCACTCAATATTTCGTGCG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTCAGAAC-------ATTAAGTTCATGCTCTTTTTCGCATTGAAACATCTCAATAAGGTT----GGTGTAACATTC------------AAAT---CTT---------------------------T------CCGAAG---ATG----------TT-GCTCA------------TGT--TGT---TCGT------------------TACTTTTCTAGATCCTAAAAGTGGAGATCTTTGACAAAAAGAGCACTCAGTACTTTGTGCG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTCAGTTC-------TTCAAATTTACGCTGTCCGCAATGATGCCTAAACTTTTTACTGTA----AGTCTTGCTTTT------------AAAA----TG--------------------------CTCTTA------A-------------------------------------------------GCAATCCTTTTAAATCTCCGGTATTTCCTCAGTTCTTCAATATGAAAGTCTTCGATGGCAAGAAAGTTGATTATTTCGTTAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGCGGAATGCAGTTCTTTAAGTTCATGATGGCCTCAATTATGCCAAAAATATTTAATGTGAGTCCACTTA-G------------AAGT--------CG--------------------------T-CTAT------A-----------------TT-------GTATCTTTTTGTAATATCG---GTCT------------------TCTTTTTTCAGTTCCTTGGACTTACAATCTTTGAAGCAGGAAAAGTTGAGTACTTTGTTCG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGCAAAAC-------ATAAAGTTTATGTTGTTCTTCGCATTGAAGAGTCTCAATAAGGTT----GGTAGAATATTT-------------------------------------------AGGGAA-TAGCAC---------A----------GACC-CTATAA-----------ACA--TAT---TCCT------------------TTTCTTTGAAGGTCCTGAAAGTGGAGCTTTTTGACAAGAAGAGTACTCAGTATTTCGTGCG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TGCAAAAT-------GTTAAGTTCATGTTGTTCTTCGCATTGAAGAGTCTGAATAAGGTT----TGTTGAGAAA-------------A------GATA---------------------------T------CAGAAGAATATACT------AA----TATAA-----------AGA--GAA---ATTT------------------TATTTTTACAGATTCTGAAAGTTGAGCTATTTGATAAAAAGAGCACTCAGTATTTCGTGCG	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGCAGAGC-------ATGAAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAATAAGGTT----GGCACAGCATACAC---------------ACATA---------------------------T------CAAAAAAATATATT------CCT-------------------TAA--TTT---TAAT------------------AATCCTTGTAGATCCTTAAGGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................CGATAGGAAAAGCACTCAGT..........	20	2	6.50	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAAGGTCGAGCTTTTCGATAGGAAAAG..................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0
..........................GTTGTTCTTCGCATTGAAGG..............................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GATCCTTAAGGTCGAGCT.................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GATCCTTAAGGTCGAGCTT................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GATCCTTAAGGTCGAGCTTTT..............................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TCGATAGGAAAAGCACTCAGT..........	21	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................TTCGATAGGAAAAGCACTCAGTATT.......	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TCGATAGGAAAAGCACTCAGTATT.......	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................ATAGGAAAAGCACTCAGTATT.......	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GAGCTTTTCGATAGGATGG...................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTCAGTTC-------TTCAAGTTCATGCTGTCCGCCTTGGTGCCAAAGATTTTCAGTGTAAGCTTGTTAA-T------------ATTTGATG----TG--------------------------CACTGAAT---------A----------GATT-ATATAT-----------TCA--AGA---TATT------------------GTCCTTTTCAGCTTCTGAAGCTTTCTATTTTCGACTCCGCCAAGGTTGATTACTTTGCCCG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....TTC-------TTCAAGTTCATGCTGTC............................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTTC-------TTCAAGTTCATGCTGT.............................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTTCATGCTGTCCGCCTTG.....................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGTTC-------TTCAAGTTCATGCTGT.............................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGTTC-------TTCAAGTTCATGCTG..............................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CAAGTTCATGCTGTCCGCCTT......................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTTC-------TTCAAGTTCATGCTGTCCGCC........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TTCATGCTGTCCGCCTTGGTGCCAAA.............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AAGTTCATGCTGTCCGCCTTGGT...................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CGACTCCGCCAAGGTTGATT..........	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ATGCTGTCCGCCTTGGTGCCAAAG............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CGCCAAGGTTGATTACTTT.....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GACTCCGCCAAGGTTGATTACT.......	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CATGCTGTCCGCCTTGGTGCCAAAG............................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCAGTTC-------TTCAAGTTCATGCT...............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTTCATGCTGTCCGCCTTGGT...................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CAAGTTCATGCTGTCCGCCT.......................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTTCATGCTGTCCGCCTTGGTGCCA...............................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................ATTTTCGACTCCGCCAAGGTT..............	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
TTCAGTTC-------TTCAAGTTCATGCTGTCCGCC........................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AAGTTCATGCTGTCCGCCTTG.....................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AAGTTCATGCTGTCCGCCTT......................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TTCTATTTTCGACTCCGCC....................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GACTCCGCCAAGGTTGATTACTT......	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................ATTTTCGACTCCGCCAAG.................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AGTTCATGCTGTCCGCCTTGGC...................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AGTTCATGCTGTCCGCCTTGGTGCC................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TTTCTATTTTCGACTCCGCCAAGGTTG.............	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TCATGCTGTCCGCCTTGGTGCCAA..............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CTTCTGAAGCTTTCTATTT...............................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AGTTCATGCTGTCCGCCTTGGT...................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTTCATGCTGTCCGCCTTGGTGCCAAAG............................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CTATTTTCGACTCCGCCAAG.................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTCGACTCCGCCAAGGTTG.............	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTTC-------TTCAAGTTCATGCTGTC............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GTTC-------TTCAAGTTCATGCTGTCCGCCTT......................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GTCCGCCTTGGTGCCAAAGATTTTC......................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TCGACTCCGCCAAGGTTGA............	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TTCAGTTC-------TTCAAGTTCATGCTGTCCGCCTTGGTGCCAAAGATTTTCAGTGTAAGCTTGTTAA-T------------ATTTGATG----TG--------------------------CACTGAAT---------A----------GATT-ATATAT-----------TCA--AGA---TATT------------------GTCCTTTTCAGCTTCTGAAGCTTTCTATTTTCGACCCCGCCAAGGTTGATTACTTTTCTCG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................................................................................................................AGCTTTCTATTTTCGACCCCGCCAAGGTT..............	29	2	0.50	1	1	0	0	0
....................GTTCATGCTGTCCGCCTTG.....................................................................................................................................................................................................................................	19	2	0.50	1	1	0	0	0
.......................................................................................................................................................................................................................................CTATTTTCGACCCCGCCAAGGTTG.............	24	2	0.50	1	1	0	0	0
...........................................................................................................................................................................................................................................TTTCGACCCCGCCAAGGTTG.............	20	2	0.50	1	0	0	0	1
.....................TTCATGCTGTCCGCCTTGGTG..................................................................................................................................................................................................................................	21	2	0.50	1	1	0	0	0
........................................................................................................................................................................................................................................TATTTTCGACCCCGCCAAGGTTGATTA.........	27	2	0.50	1	1	0	0	0
.......C-------TTCAAGTTCATGCTGTCCGCCTTG.....................................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0

droYak3

TGCAGAAC-------ATGAAGTTCATGTTGTTCTTCGCTTTGAAGAGTCTTAATAAGGTT----GGCACAGCACTCAC---------------ACACA---------------------------T------CAGAAGAACATATTGATTAAAAC--------------------GAATTGT---TTCT------------------TTTCCATGTAGATCCTTAAGGTCGAGCTTTTCGATAAGAAAAGCACTCAGTATTTCGTGCG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................CGCTTTGAAGAGTCTTAATAAG...................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	1	3	0	0	0	0
.............................................................................................................................................................................................................................................TCGATAAGAAAAGCACTC.............	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
....................GTTCATGTTGTTCTTCGCTTTGAAGA..............................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..........................GTTGTTCTTCGCTTTGAAGA..............................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTTCGATAAGAAAAGCACTCAGT..........	23	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............ATGAAGTTCATGTTGTTCTT.........................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................................................................................CGATAAGAAAAGCACTCAGT..........	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................................................................................CGAGCTTTTCGATAAGAAAA...................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................................GATAAGAAAAGCACTCAGT..........	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................GAAGTTCATGTTGTTCTTCGCTTTGAAGA..............................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................GATCCTTAAGGTCGAGCTT................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TCGATAAGAAAAGCACTCAGT..........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................GAAGTTCATGTTGTTCTTCGCTTTGAA................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GATCCTTAAGGTCGAGCTTTTCGATAAGA......................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................ATCCTTAAGGTCGAGCTTTTCGATAAGA......................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................GATCCTTAAGGTCGAGCT.................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................GTCTTAATAAGGTT----GGCACA......................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................CTTCGCTTTGAAGAGTCTTAATAAG...................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................TTTGAAGAGTCTTAATAAGA..................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................CCTTAAGGTCGAGCTTTT..............................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTTCGATAAGAAAAGCACTCAGTATTTC.....	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................GTTGTTCTTCGCTTTGAAGAGT............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................AAAGCACTCAGTATTTCGT...	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............ATGAAGTTCATGTTGTTCT..........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................ATGTTGTTCTTCGCTTTGAAGA..............................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTTCGATAAGAAAAGCACTCAGTATTT......	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................CGAGCTTTTCGATAAGAAAAG..................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................CATGTTGTTCTTCGCTTTGAAGAGT............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................GTTCATGTTGTTCTTCGCTTTGAAGAG.............................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

TGCAGAAC-------ATGAAGTTCATGTTGTTCTTTGCGTTGAAGAGTCTTAATAAGGTT----GGCAAAGCATTCACATATATAT----------------------------------------------TAGAAGAATATATT------GATT-AAACAA-----------TAA--TGT---TAAT------------------TTTCCACGTAGATCCTTAAGGTCGAGCTTTTCGATAAGAAAAGCACTCAGTATTTCGTGCG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................GTTGTTCTTTGCGTTGAAGA..............................................................................................................................................................................................................................	20	1	14.00	14	1	0	0	0	11	2	0
....................GTTCATGTTGTTCTTTGCGTTGAAGA..............................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	4	0	0
..........................GTTGTTCTTTGCGTTGAAGAGT............................................................................................................................................................................................................................	22	1	3.00	3	0	0	1	0	1	1	0
....................GTTCATGTTGTTCTTTGCGTTGAAGAGT............................................................................................................................................................................................................................	28	1	3.00	3	0	0	0	0	3	0	0
..............................................................................................................................................................................................................................................CGATAAGAAAAGCACTCAGT..........	20	1	3.00	3	0	0	0	0	2	1	0
.......................CATGTTGTTCTTTGCGTTGAAGA..............................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	1	1	0	0
........................ATGTTGTTCTTTGCGTTGAAGA..............................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0	0
...........................................................................................................................................................................................................................................TTTCGATAAGAAAAGCACTCAGT..........	23	1	2.00	2	0	0	1	0	1	0	0
TGCAGAAC-------ATGAAGTTCATGT................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0
.....................TTCATGTTGTTCTTTGCGTTGAAGA..............................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	2	0	0
.....................................................................................................................................................................................................................................CGAGCTTTTCGATAAGAAAA...................	20	1	2.00	2	0	0	0	0	2	0	0
............................TGTTCTTTGCGTTGAAGA..............................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	1	1	0
.............................................................................................................................................................................................................................CTTAAGGTCGAGCTTTTCGATAAGAAAA...................	28	1	2.00	2	0	0	0	0	2	0	0
.......C-------ATGAAGTTCATGTTGTTCTTTGCGTTG..................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
......AC-------ATGAAGTTCATGTTGTT............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................TTTCGATAAGAAAAGCACTCA............	21	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................GATCCTTAAGGTCGAGCC.................................	18	1	1.00	1	0	1	0	0	0	0	0
.......................CATGTTGTTCTTTGCGTTGAAGAGT............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
......................TCATGTTGTTCTTTGCGTTGAAGAGT............................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...............ATGAAGTTCATGTTGTTCTT.........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.......C-------ATGAAGTTCATGTTGTTC...........................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTCGATAAGAAAAGCACTCAGT..........	22	1	1.00	1	1	0	0	0	0	0	0
...................AGTTCATGTTGTTCTTTGCGTT...................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...................................TGCGTTGAAGAGTCTTAATAA....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
......................................GTTGAAGAGTCTTAATAA....................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0
................TGAAGTTCATGTTGTTCTT.........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...........................TTGTTCTTTGCGTTGAAGA..............................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..................AAGTTCATGTTGTTCTTTGC......................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................ATCCTTAAGGTCGAGCTTT...............................	19	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................CGATAAGAAAAGCACTCAGTATTT......	24	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................ATAAGAAAAGCACTCAGTATTTCGT...	25	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................GATCCTTAAGGTCGAGCTT................................	19	1	1.00	1	0	0	0	0	1	0	0
..........................GTTGTTCTTTGCGTTGAAGAGTC...........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
....................GTTCATGTTGTTCTTTGCGT....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
........................ATGTTGTTCTTTGCGTTGAAGAGT............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................ATCCTTAAGGTCGAGCTTTTCGATAAGAA.....................	29	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................CGAGCTTTTCGATAAGAAA....................	19	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................CGATAAGAAAAGCACTCAGTATTTCGT...	27	1	1.00	1	0	0	0	0	1	0	0
......................................GTTGAAGAGTCTTAATAAGA..................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................TTTCGATAAGAAAAGCACTCAG...........	22	1	1.00	1	0	0	0	0	1	0	0
......................TCATGTTGTTCTTTGCGTTGA.................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AAAGCACTCAGTATTTCGT...	19	1	1.00	1	0	0	0	0	1	0	0

dvi_2692

scaffold_12822:3339204-3339266 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads