ID:

dvi_2672

 Coordinate:

scaffold_12822:3106817-3106967 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.5 -21.2 -21.2

Flybase annnotation

CDS [Dvir\GJ14191-cds]; exon [dvir_GLEANR_14148:2]; intron [Dvir\GJ14191-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron-

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACGCTGTCCGAGCTAAAGCGTCGCATACAAACGCTCAACAGCACCGCCAAGTAAGACAATTAGGAACTTATTAAATGAGGAAGATTTTACACAAGTTACCTATGAGAATTTACACTAATCCTGGCTTTTAAAAAACGTTGTGTACATATTTTTGGGCCCTTGCATAGAGCATTATAATTTTGTCGTGAAATGTGTAACGCATAGAAGGAAATATTTCCGACCCCATAAAGTATATATATTCTTGATTAGTA
**************************************************(((((.....(((((((((...((((.......)))).....))))).))))......))))).........................((((((((((((((..(((...(((.....)))..........)))..))))))))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060689
160x9_testes_total
 SRR060655
9x160_testes_total
 SRR060673
9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060654
160x9_ovaries_total
 V116
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 M047
female body
 SRR060683
160_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060657
140_testes_total
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAAT....................................... 25 0 1 4.00 4 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAATAT..................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAATATT.................................... 28 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAA......................................... 23 0 15 1.60 24 1 6 0 2 0 1 3 0 0 0 2 3 1 1 2 0 0 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAATT....................................... 25 1 4 1.25 5 0 3 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGG........................................... 21 0 20 1.10 22 0 0 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAATG...................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAATT...................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAA........................................ 24 0 14 1.00 14 0 5 2 0 0 0 1 0 0 0 0 2 1 0 0 0 0 2 0 1 0 0 0 0 0 0
...................................................................................................................................................................ATAGAGCATTATAATTTTGTCGTGA............................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AACGCATAGAAGGAAATATTTCCA................................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGTAGGAAGTA...................................... 26 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAATA...................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTTTAACGCATAGAAGGAAATA...................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AACGCATAGAAGGAAATATTTCCGACCCC........................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTAACGCATAGAAGGAAATATTTCCGACC............................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATCGAAGGAAAT....................................... 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GGATAGAGCATTGTAATT........................................................................ 18 2 17 0.41 7 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 1 1 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAATGAAATT...................................... 26 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAATTAT..................................... 27 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAATTAG..................................... 27 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTAAATGATGAAGATTTTAA................................................................................................................................................................. 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CATAGAGCATTGTAATTAT...................................................................... 19 2 7 0.29 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGA.......................................... 22 0 20 0.25 5 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAATTG...................................... 26 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATGGAAGTAAAT....................................... 25 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAA............................................. 19 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAAGGACT....................................... 25 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TGGATAGAGCATTGTAATTAT...................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGTGAATT...................................... 26 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTATAATTTTGTCGTGAAATGTGT........................................................ 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAGATATT.................................... 28 1 20 0.10 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................TCCGACCCCATAAAGTATATATAT............ 24 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAAA....................................... 25 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AAAGTATATATATTCTTGA...... 19 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAAAA...................................... 26 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAAG....................................... 25 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TTTAATGATGAAGATTTTACT................................................................................................................................................................ 21 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAC........................................ 24 1 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAG........................................ 24 1 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAATCAA......................................... 23 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGATAT....................................... 25 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGATTT....................................... 25 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................AGGTTGTGTACACATTTTTT................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAATGTGTAACGCATAGAAGGATATA...................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CGTGAAATGTGTAACGCATAGAAGGA.......................................... 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGCGACAGGCTCGATTTCGCAGCGTATGTTTGCGAGTTGTCGTGGCGGTTCATTCTGTTAATCCTTGAATAATTTACTCCTTCTAAAATGTGTTCAATGGATACTCTTAAATGTGATTAGGACCGAAAATTTTTTGCAACACATGTATAAAAACCCGGGAACGTATCTCGTAATATTAAAACAGCACTTTACACATTGCGTATCTTCCTTTATAAAGGCTGGGGTATTTCATATATATAAGAACTAATCAT
**************************************************(((((.....(((((((((...((((.......)))).....))))).))))......))))).........................((((((((((((((..(((...(((.....)))..........)))..))))))))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060686
Argx9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 M047
female body
 SRR060674
9x140_ovaries_total
 SRR060678
9x140_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 GSM1528803
follicle cells		 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060689
160x9_testes_total
..............................................................................................................ATGTGATTAGGAACGAAA........................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TAATATTAAAACAGCACTTTACACATT...................................................... 27 0 20 0.55 11 0 10 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................TTAAAACCCGGGGAACGTATC.................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GGGGTATTTCATATATATAAGAACT...... 25 0 20 0.40 8 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AATATTAAAACAGCACTTTACACATT...................................................... 26 0 20 0.40 8 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGGTATTTCATATATATAAGAAC....... 23 0 20 0.25 5 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................TATTAAAACAGCACTTTACACATT...................................................... 24 0 20 0.20 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TGGGGTATTTCATATATATAAGAAC....... 25 0 20 0.20 4 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0
...........................................................................................................TAGATGTGATTAGGAACG.............................................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GCTGGGGTATTTCATATA................ 18 0 20 0.15 3 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0
................................................................................................................................................................................TAAAACAGCACTTTACACATT...................................................... 21 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................AGCACTTTACACATTGCGTATCTTCCTT......................................... 28 0 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TAAAACAGCACTTTACACAT....................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AATATTAAAACAGCACTTTACA.......................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TAAAACAGCACTTTACACATTGCGTA................................................. 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................AAACAGCACTTTACACATTG..................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TAAAACAGCACTTTACACATTGCGTATCT.............................................. 29 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GCACTTTACACATTGCGTATCT.............................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ATTAAAACAGCACTTTACACATT...................................................... 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AATATTAAAACAGCACTT.............................................................. 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................AATATTAAAACAGCACTTTACACA........................................................ 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGCTGGGGTATTTCATATATATAAGA......... 26 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AAACAGCACTTTACACATTGCGTATCTT............................................. 28 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AAGGCTGGGGTATTTCATATATATAAG.......... 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AACAGCACTTTACACATT...................................................... 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................ACTTTACACATTGCGTATCTT............................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................AGGCTGGGGTATTTCATATATATA............ 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CAGCACTTTACACATTGCGTAT................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................CTGGGGTATTTCATATATATAA........... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................AGCTACACATGTATAAAAA.................................................................................................. 19 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AACAGCACTTTACACATTGCGTATCTT............................................. 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TGTAACATTAAAACAACACTTTACACATT...................................................... 29 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12822:3106767-3107017 - dvi_2672 ACGC--TGTCCGA---------GCTA---------AAGCG-TCGCATACA-----------------------------------------------------------------------------------AAC----------------------------------------------------------------------GCTCAACAGCACCGCCAAGTAAG--------------------ACAATTAGGAACTT--------------------------------------ATTAAATGAGGAAGATTTTAC--------------------------ACAAGTTACCTATGAGAATTTACAC--------------------------------------------------------------------------------------------------TAATCCTGGC---------TTTTA----AA-----A------AACGTTGTGTA-----------CATATTTTTGGGCCCTTGCAT------------------------------------------------AGAGCATTATAATTTTGT--CGT-----GAAATGTGTAACGCATAGAAGGAAATATTTCCGACCCCATAAAGT--ATATATATTCTTGATTAGTA
droMoj3 scaffold_3097:92369-92602 - GCGC--CATGC--AG--------------------AA--G------T-------------------------------------------------------------------------------GTGATA-------------------------------------------------------------------TGTGAAATCAAAAG---ACTACGAAACAAG--------------------A-----CAAA----ACTGC--------AAGACTTAACAGCTAACATAAATACAATT-----------------TACAT-----------------------AGATTA------------------------------------------------------------------------------------------TTTA----------C----------CAAT----------------------------------------------------------TCTCTCTTTTTATACCCT---------------------------GAACCCAT---TTTCAATGGGAAATCAGGGTATAATGGTTTTGT--TGA-----AATGTATGTAACAGGGAGAAGGAGGCGTGGCAGACCCCACAAAGT--ATATATATTCTTGATCAGGG
droGri2 scaffold_14906:10570864-10571118 + GTCG--AATGT---------AAA---TAGTAAACAA--------CATAGTA-ATAGTA--ATAGTAAT---------------------AATACCCTACT----------AAATTGGGGAAA--------------CACGCTTAA-G-------TTT-------------TCAGC--------------------------------------------------------------------------------------------------------AAT-----------------------------TA-----------------TT-------------------------------------------------------------------------------------------------------TACTTTACGCAGCGATGTTT--GAT-TATTTTAAA----------TAAC-AGCAATCATA---------------------------TTTA--AAATATTTTGTTTTTTCTACCCTTGTAG------------------------------------------------AGTGTATTATAATTCTGT--TTT-----CATGTTTGCAACGCATTGAAGGAGACGCCTCCGACCCCATAAGAT--TGATATATTATTGATCAATA
droWil2 scf2_1100000004585:3929642-3929900 - AGGC--AAAGT----------------------------G-TTGCAA-CG----------------------------------------------------------------------------------AAT-----------------------------------------------------------------------GCTCAACAGTGGAATCAAATGC-----------------------------------------------------------------------AAAATG----------GTTTATTAAAAATAA--AATTAGCTTTCTTTTGTATAGTTATTCA----------------------------A---T----------GTTAATAAACGGATT---------TTATA----------------------------TCAATCCAA----------CAAATTGTTAATTGCAATTGGAA-----------------GC-CA-----------CCTTTTATTATACCCTTGCAA------------------------------------A----------AAGGGTATATTAATTTTGG--TCA-----AAAGTGTGCAACGCATAGAAGGAAGCATCTCCGACCACATAAAGT--ATATATATTCTTGATCAGCA
dp5 Unknown_group_50:13367-13650 + TCCC--AGTTA------------------------AGGCC-CTGCAG-TA----------------------------------------------------------------------------------AATC----------------------------------------------------------------------TCTCAAGAGAACCACCAAATAGGGTATAGGGAGCCAACAAAGGGCTAGA--------ACGATGAAATGTCATAACT-----------------------------TG-----------------TC-------------------------------------------------------------------------------------------------------ATTTCGAGGCATTAAGGTGT--AAC-AAGTTTGCACCGATTCCAGC---------TCTTG---------------------------CTTA--AGCCGGTTGTGTTTTTATATCCG---------------------------ATACTCA--------AAATGAGTATTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGT--ATATATATTCTTGATCAGCA
droPer2 scaffold_74:154632-154915 - TCCC--AGTTA------------------------AGGCC-CTGCAG-TA----------------------------------------------------------------------------------AATC----------------------------------------------------------------------TCTCAAGAGAACCACCAAATAGGGTATAGGGAGCCAACAAAGGGCTAGA--------ACGATGAAATGTCATAACT-----------------------------TT-----------------TC-------------------------------------------------------------------------------------------------------ATTTCGAGGCATTAAGGTGT--AAC-AAGTTTGCACCGCTTCCAGC---------TCTTG---------------------------CTTA--AGCCGGTTGTGTTTTTATATCCG---------------------------ATACTCA--------AAATGAGTATTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTGACGTCCAGAAGGAATCGTTTCCGACCGCATAAAGT--ATATATATTCTTGATCAGCA
droAna3 scaffold_13337:21559719-21559919 + CTCA--AAAGC--T------A--------------TC--T-CCACGT-------------------------------------------------------------------------------GCAATATAAATAAGATCAA-G-------TGA---------------------------------------------------------------------------------GCA-----------------------------------------------------------AATTTTAAAAAAATAATTTT----------TT--------------------------------------------------TCTTTAA---ACAAAAAAT----------------T---------TGTTT----------------------------TCA-------------------------------------------G----------------------------GGTATTTTTATACCCTTGCAG------------------------------------------------ACGGTATTATAATTTTGG--TCA-----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATCAGGA
droBip1 scf7180000396544:362339-362588 - GCGT--GGTCC------------------------GGCCC-CCG---------------------------------------------------------------------------------------------------------------------------------------------------ATGTGGCAGCTGAAAGCCAAACAGAA--GCCAAGCAAA--------------------ACAAGCTGGA----ATTAT--------GAGAAGTGGAGGAGAACGTTGGCAAAATT-----------------AAAGAAAA--C-----T------GTGGAAAGCTCTTCA----------------------------A---T---------------------------------------------------------------------------------------------------------TTTCATTCCCATTTT------CC-CA-----------GTTTTTTTTATACCCTTGCAG------------------------------------------------AGGGTATTATAATTTTGT--CCA-----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATCAGGA
droKik1 scf7180000302577:942888-943103 + AAAC--AATAA---------------------AAAA---CATTACAA-----ATT-----AAAGGAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----ATTAT--------AAGAATATA---------------AATTTAAAAATAATAATTTTAA----A--A--ATT---------------------------------TAATA-TTTTATTTT--TTATATATTTAAATTT-----------------------------------------------------------------------ATT-----------------------------------------------T-----------TTTTAGTTTTGTGCCCTTGCAG------------------------------------------------A--GTGTTTTAATTTGAG--TCA-----GAAGCTTGAAAGGCAGTGAAGGAGTCATTTCCGACCCTATAAACC--ATATATATTCTTTATCAGCA
droFic1 scf7180000453928:169205-169415 + AAAC--ATCAC----------------------------------GTACA---TTCACTCACCGGGTCTACGCT----------------------------------------------------------------AGTTAGAAGTTTTCAGTTTGCG--------------------------------------------------------------------------------------------------------------------------------------------TATTTAATAAAAAAGATTTTAA----A--G--ATT--------------------------------C----------------TCCAA---A-----------------A--------------------------------------------------------------------CTCA--------------------------------------------------TTGTTATTTTTATACCCTTGCAG--------------------------------AGCAA----------AAGGATATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGT--ATATATATTCTTGATCAGCA
droEle1 scf7180000490297:20112-20354 + GTTG--TT--CGA---------CCTA---------TTG-G-TCGCATTTAAT-TTCTT--GGAGGCCCAACGATACTTTCACAGTAAGT-------------------------------------AAATTATATT----------------------------------------------------------------------TTATAAAATGAAAACTAAATATATAA------------------------------------------------------------------------------TTATTATTAT----------TT--------------------------------------------------ACATA---TGTTTAGAAAT----------------A---------ATTTT----------------------------TTA-------------------------------------------T----------------------------ATAATAATTATACCCTTGCAG------------------------------------------------AGGGTATTCTAATTTCAG--TCA-----GAAGTTTGAAACGCAGTGAAGGAGACATCTACGACCCTATAAAGT--ATATATATTCTTGATCAGCA
droRho1 scf7180000777891:10267-10507 - ATGC--AAGCT---------A--------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------ATAAACGAAACAAACAAAAGACAGATTCGA--------ATTAAAGTT----------------------------------------------ATAAAAAA--ATT---------------------------------TGACA-TTAAATTTG-------TGTTTGAATTTAAGTTATCAATCAGAAATTATGGCCA-----TCA-----AAGGCTGTGATG---------------------------CC-A--------------------------------------------------TCGCGATTTTTATACCCTTGCAG------------------------------------------------AGGGTATTATAATTTTGG--CCA-----GAAGTTTGTAACGCAGTGAAGAAGACGTTTCCGACCCTATAAAGT--ATATATATTCTTGATCAGGA
droBia1 scf7180000302295:120418-120635 + AACCTGAAGCT---------AAA---TAGCG-----------CACAAATTTT-TTCCA--GCGGCAGCTACGAAGAATTAGGAGCA--------------------------------------------------TCAAATCAA-T-------TCG-------------GCAAC--------------------------------------------------------------------------------------------------------A------------------------------------ATTACA---------------------------------------------------------------------------------------------------------------------------------------------------A----------C-----------------AACCACTACCACTTA------TC-TA----AAAAA--TGTAGTTTTACACCGTTGCAG------------------------------------------------ACGATTTAATTATTTCAG--TCA-----GAAGTTTGCAACGAAGTGAAGGCGGCATTTCCGACCCCATAAAGA--ATCAATATTCTTCATAAGGA
droTak1 scf7180000415380:571420-571664 + AGCC--AAAGT--T------G--------------GA--G-CCACATGCAA-ATGCCA--GCGCCAGC---------------------ATTAGGCAAGTGCACTGAGAAAAATAGGAAAACAATT----------TAATTGGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAG----A--A--AA--------------------------------TATAAAAAATTAAT-TGCTTAAA---ATATAACA-----------------T---------T----------------------------------------------------------------TTG---------------------------GTCA--TGT---TGGTGATATTATACCCTTGCAG------------------------------------------------AGGGTATTATAATTTCAG--TCA-----GATGTTAGCAACGCAGTGAAGGAGACGTATCCGACCACATAAAGT--ATATATATTCTTGATCAGCA
droEug1 scf7180000406964:50181-50361 + CAAT--TAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATT-----------------ATAAATTA--T-----TTACAGCTTGTAAAGTTTTTCATAAAATGTTACTT--------------------------------------------------------------------------------------------------TAAT----------------------------------------------------------TTCTTCTTTTTATACCCG---------------------------TTACTTTTAGAGTAA----------AAGGGTATACTGTATTCGT--TGA-----AAAGTATGAAACAGGTAGAAGGAAGCTTTTCTGACCCTATAAAGT--ATATATATTCTTGATCACGA
dm3 chr3L:23441984-23442179 + AAAA--AT-AT---------ATA---TAATTAAAAA--------CAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----T------TTTACAAACCA----------------------------------------------------------------------------CCT-----TAAAT-----------------------------------------------------TGTCATGCCC-------------------------T----------------TTGGAAAGTGGTTAAAATTGTGTACCCGTTTATTGTAGATTAAAATGGGATATAATACTATACTAGATTCGT--TGA-----AAAGTATGTAACAGGTAGAAGAAAGCGTTTTCAACCATATAAAGT--ATATAAATTCCTGATCAGGA
droSim2 3r:339817-340004 - AATT--AATTA------------------------AA---------------------------------------------------------------------------------------------------TCAAATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAG--------------------------AAACATTAATTCTAGGACTT---------------CTTAAA---A-----------------ACCGAATT---------TTTTG----------------------------TCA-------------------------------------------T------AACATTGT-CA-----------CTTGTTTTTATTCCCG---------------------------AAACTCGT------------------AAAGTAAACAAGATCTGT--CGA-----AAAGTATGTAGCAGATAGAAGGAAACGTTACCGACCACATAAAAT----GTATATTCTTTATCAAGA
droSec2 scaffold_26:8257-8452 - AAGG--TTAGT---------A--------------CGGTC-TTAT-----------------------------------------------------------------AAAATGGAGATCAACA----------TCAAATAAACTTTTAGAGTTTACAGACCTACTTCGCAGGTGTCATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACTAACTTTAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------CTGCACACAC----CTT----------------------------------------------------------------------CGTTTTATATACCCGT--TGA-----AAAGTATGTAAAAGGCAGAAGGAATCGTTACGGACCATATAAAGTCTATATATATTCTTGATCAGGA
droYak3 v2_chr2h_random_025:18136-18363 + CATC--ATCCA---CAATTTATA---TGATTAGAAA--------CTT----------------------------------------------------------------------------------------------------------------------ATTTTGGAGGTATGGTTTAGTTGACACAGTAGTTAGTGACAATTGAAG---ACAATTTACTTCC--------------------G-----CAGA---------------------------------------------------------ATTCAA----G--G--ATT--------------------------------T--------------------------------------------------------------------------------TATG---------------------------CT-A----------------------------------------------AA---TAGTATTATAAAGTCTTTGGTA------------------------------------A----------AAGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGT--ATATATATTCTTGATCAGGA
droEre2 scaffold_4770:807084-807294 + GTAA-GAATTA------------------------AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTT--------------------------------------AAGAAATAGGGAAAA-------------------------------------------------------------------------------------------------------TATGGCCA-----TTATACCTGGAGTATTAATGTATTCAAA-AGATATACAAAGCT--------------------------------------------CTGTATCTTT----TTTGGATTTTTATACCCA---------------------------TCAGTCGTAGATT-A----------AAGGGTATACTAGATTCGC--TGA-----AAAGTATGTAACAGGTAGAAGGAAACGTTTCCGATCCCATATAGT--ATATATATTTTTGATCAGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACGC--TGTCCGA---------GCTA---------AAGCG-TCGCATACA-----------------------------------------------------------------------------------AAC----------------------------------------------------------------------GCTCAACAGCACCGCCAAGTAAG--------------------ACAATTAGGAACTT--------------------------------------ATTAAATGAGGAAGATTTTAC--------------------------ACAAGTTACCTATGAGAATTTACAC--------------------------------------------------------------------------------------------------TAATCCTGGC---------TTTTA----AA-----A------AACGTTGTGTA-----------CATATTTTTGGGCCCTTGCAT------------------------------------------------AGAGCATTATAATTTTGT--CGT-----GAAATGTGTAACGCATAGAAGGAAATATTTCCGACCCCATAAAGT--ATATATATTCTTGATTAGTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAAT.........................................2514.004000001000000000000000001001001000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAATAT.......................................2712.002000000000000000000000000000002000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAATATT......................................2812.002000000000000000000000000000010000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAA...........................................23151.6024000020000000000000000001116301000002023200000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGG.............................................21201.10220000000000000000000000000000220000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAATG........................................2611.001000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAATT........................................2611.001000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAA..........................................24141.0014000000100000000000000000015220000000201000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------------------------------------------------AGAGCATTATAATTTTGT--CGT-----GA.................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCATAGAAGGAAATATTTCCA..................................2411.001000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAATA........................................2611.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCATAGAAGGAAATATTTCCGACCCC.............................2911.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGA............................................22200.255000005000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAA...............................................19200.204000000000000000000000000004000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAATTTTGT--CGT-----GAAATGTGT..........................................................24200.102000000000000000000000000000000000200000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGT--ATATATAT............24200.102000000000000000000000000000020000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAAA.........................................25200.102000000000000000000000000000200000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGT--ATATATATTCTTGA......19200.102000000000000000000000000000000000000000200000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAAG.........................................25140.071000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAC..........................................24180.061000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGTAACGCATAGAAGGAAG..........................................24190.051000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT-----GAAATGTGTAACGCATAGAAGGA............................................26200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
GCGC--CATGC--AG--------------------AA--G------T-------------------------------------------------------------------------------GTGATA-------------------------------------------------------------------TGTGAAATCAAAAG---ACTACGAAACAAG--------------------A-----CAAA----ACTGC--------AAGACTTAACAGCTAACATAAATACAATT-----------------TACAT-----------------------AGATTA------------------------------------------------------------------------------------------TTTA----------C----------CAAT----------------------------------------------------------TCTCTCTTTTTATACCCT---------------------------GAACCCAT---TTTCAATGGGAAATCAGGGTATAATGGTTTTGT--TGA-----AATGTATGTAACAGGGAGAAGGAGGCGTGGCAGACCCCACAAAGT--ATATATATTCTTGATCAGGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................TACGAAACAAG--------------------A-----CAAA----ACTGC--------AAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................25203.55717100000
..........................................................................................................................................................................................................................TACGAAACAAG--------------------A-----CAAA----ACTGC--------AAGACC.................................................................................................................................................................................................................................................................................................................................................................................................................................27202.25450000450
......................................................................................................................................................................................................................................................................................................................................T-----------------------AGATTA------------------------------------------------------------------------------------------TTTA----------C----------CAAT----------------------------------------------------------TCTCTCTTTTTA..........................................................................................................................................................2811.001100000
......................................................................................................................................................................................................................................................................................................................................T-----------------------AGATTA------------------------------------------------------------------------------------------TTTA----------C----------CAAT----------------------------------------------------------TCTCTCTTT.............................................................................................................................................................2511.001100000
..........................................................................................................................................................................................................................TACGAAACAAG--------------------A-----CAAA----ACTGC--------A......................................................................................................................................................................................................................................................................................................................................................................................................................................22200.204400000
..........................................................................................................................................................................................................................TACGAAACAAG--------------------A-----CAAA----ACTGC--------AAGACTC................................................................................................................................................................................................................................................................................................................................................................................................................................28200.102200000
........TGC--AG--------------------AA--G------T-------------------------------------------------------------------------------GTGATA-------------------------------------------------------------------TGTGAAATCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
..........................................................................................................................................................................................................................TACGAAACAAG--------------------A-----CAAA----ACTGC--------AAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102200000
.........................................................................................................................................................................................................................CTACGAAACAAG--------------------A-----CAAA----ACTGC--------AAGACT.................................................................................................................................................................................................................................................................................................................................................................................................................................28200.102000020
........TGC--AG--------------------AA--G------T-------------------------------------------------------------------------------GTGATA-------------------------------------------------------------------TGTGAAATCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
..............G--------------------AA--G------T-------------------------------------------------------------------------------GTGATA-------------------------------------------------------------------TGTGAAATCAAAAG---AC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000001
.........................................................................................................................................................................................................................................................................................TTAACAGCTAACATAAATACAATT-----------------TA.......................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
..........................................................................................................................................................................................................................................................................................TAACAGCTAACATAAATACAATT-----------------TA.......................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
.........................................................................................................................................................................................................................................................................................TTAACAGCTAACATAAATACAATT-----------------TAC......................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATGTAACAGGGAGAAGGAG...........................................24200.051000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--TGA-----AATGTATGTAACAGGG...................................................21200.051010000
.............................................................................................................................................................................................................................................................................................CAGCTAACATAAATACAATT-----------------TAC......................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
..........................................................................................................................................................................................................GAAATCAAAAG---ACTACGAAACAAG--------------------A-----CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
........................................................................................................................................................................................................................................................................................CTTAACAGCTAACATAAATACAATT-----------------T........................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...........................................................................................................................................................................................................................ACGAAACAAG--------------------A-----CAAA----ACTG................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
.................................................................................................................................................................................................................................................................................................TAACATAAATACAATT-----------------TACAT-----------------------AGAT.........................................................................................................................................................................................................................................................................................................................................................25200.051000010
.................................................................................................................................................................................................................................CAAG--------------------A-----CAAA----ACTGC--------AAGACT.................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
..GC--CATGC--AG--------------------AA--G------T-------------------------------------------------------------------------------GTGATA-------------------------------------------------------------------TGTGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.........................................................................................................................................................................................................TGAAATCAAAAG---ACTACGAAACAAG--------------------A-----CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
..........................................................................................................................................................................................................................TACGAAACAAG--------------------A-----CAAA----ACTGC--------C......................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
........TGC--AG--------------------AA--G------T-------------------------------------------------------------------------------GTGATA-------------------------------------------------------------------TGTGAAATCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
..........................................................................................................................................................................................................................................................................................TAACAGCTAACATAAATACAATT-----------------TAC......................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
.........................................................................................................................................................................................................................................................................................TTAACAGCTAACATAAATACAATT-----------------TACA.....................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTATACCCT---------------------------GAACCCAT---TTTCAA........................................................................................................28200.051100000
........................................................................................................................................................................................................GTGAAATCAAAAG---ACTACGAAACAAG--------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTATAATGGTTTTGT--T..........................................................................20200.051100000
droGri2
GTCG--AATGT---------AAA---TAGTAAACAA--------CATAGTA-ATAGTA--ATAGTAAT---------------------AATACCCTACT----------AAATTGGGGAAA--------------CACGCTTAA-G-------TTT-------------TCAGC--------------------------------------------------------------------------------------------------------AAT-----------------------------TA-----------------TT-------------------------------------------------------------------------------------------------------TACTTTACGCAGCGATGTTT--GAT-TATTTTAAA----------TAAC-AGCAATCATA---------------------------TTTA--AAATATTTTGTTTTTTCTACCCTTGTAG------------------------------------------------AGTGTATTATAATTCTGT--TTT-----CATGTTTGCAACGCATTGAAGGAGACGCCTCCGACCCCATAAGAT--TGATATATTATTGATCAATASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGGC--AAAGT----------------------------G-TTGCAA-CG----------------------------------------------------------------------------------AAT-----------------------------------------------------------------------GCTCAACAGTGGAATCAAATGC-----------------------------------------------------------------------AAAATG----------GTTTATTAAAAATAA--AATTAGCTTTCTTTTGTATAGTTATTCA----------------------------A---T----------GTTAATAAACGGATT---------TTATA----------------------------TCAATCCAA----------CAAATTGTTAATTGCAATTGGAA-----------------GC-CA-----------CCTTTTATTATACCCTTGCAA------------------------------------A----------AAGGGTATATTAATTTTGG--TCA-----AAAGTGTGCAACGCATAGAAGGAAGCATCTCCGACCACATAAAGT--ATATATATTCTTGATCAGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATTTTGG--TCA-----AAAGTGTG...........................................................21200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAATTTTGG--TCA-----AAAGT..............................................................20200.05100100
dp5
TCCC--AGTTA------------------------AGGCC-CTGCAG-TA----------------------------------------------------------------------------------AATC----------------------------------------------------------------------TCTCAAGAGAACCACCAAATAGGGTATAGGGAGCCAACAAAGGGCTAGA--------ACGATGAAATGTCATAACT-----------------------------TG-----------------TC-------------------------------------------------------------------------------------------------------ATTTCGAGGCATTAAGGTGT--AAC-AAGTTTGCACCGATTCCAGC---------TCTTG---------------------------CTTA--AGCCGGTTGTGTTTTTATATCCG---------------------------ATACTCA--------AAATGAGTATTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGT--ATATATATTCTTGATCAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTG...........................................................23208.25165000000001650
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCCATA..........................24205.65113011300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTGT..........................................................24205.05101000000640370
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGT............................................................22202.805600000005600
......................................................................................................................................TC----------------------------------------------------------------------TCTCAAGAGAACCACCAAATAGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26201.8036015200100000
......................................................................................................................................TC----------------------------------------------------------------------TCTCAAGAGAACCACCAAATAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.6533021120000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGT..........................................................22201.202402100000030
...............................................................................................................................................................................................................CTCAAGAGAACCACCAAATAGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23201.152302210000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAACGTCCAGAAGGAATC.........................................21201.102202100001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAGG.............................................21201.002002000000000
.................................................................................................................................................................................................................................TAGGGTATAGGGAGCCAACAAAGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................26181.001800000003150
...............................................................................................................................................................................................................CTCAAGAGAACCACCAAATAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.801601600000000
.....................................................................................................................................................................................................................................................AAGGGCTAGA--------ACGATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................17200.75150000000960
..............................................................................................................................................................................................................TCTCAAGAGAACCACCAAATAGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.701400140000000
................................................................................................................................................................................................................TCAAGAGAACCACCAAATAGGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.601201110000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTGTA.........................................................25200.551100000000110
..............................................................................................................................................................................................................TCTCAAGAGAACCACCAAATAGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.4080530000000
................................................................................................................................................................................................................TCAAGAGAACCACCAAATAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.4080500000300
................................................................................................................................................................................................................TCAAGAGAACCACCAAATAGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.4080800000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTGGTGAAAATGGATG...............................................................21200.3570700000000
TCCC--AGTTA------------------------AGGCC-CTGCAG-TA----------------------------------------------------------------------------------AAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.3310100000000
..............................................G-TA----------------------------------------------------------------------------------AATC----------------------------------------------------------------------TCTCAAGAGAACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310100000000
...............................................................................................................................................................................................................CTCAAGAGAACCACCAAATAGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.3060600000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAATGG..................................................................21200.3060010000320
..........................................................................................................................................................................................................................................................CTAGA--------ACGATGAAATGTCATA....................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3060000001050
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTGTAAC.......................................................27200.3060000006000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGTTTCCGACCCCATAAAGT--A...................25200.2550500000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCCA............................25200.2550500000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAATGGATG...............................................................20200.2550100004000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCCAGAAG..............................................20200.2550500000000
.......................................................................................................................................C----------------------------------------------------------------------TCTCAAGAGAACCACCAAATAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.2550500000000
......................................................................................................................................................................................................................................................AGGGCTAGA--------ACGATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................16200.2550000000410
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTGTGTAACGTCCAGA................................................21200.2550500000000
..............................................................................................................................................................................................................TCTCAAGAGAACCACCAAATAGGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.2550000500000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAAGGAATCGTTTCCG..................................21200.2550000005000
..............................................................................................................................................................................................................TCTCAAGAGAACCACCAAATAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.2550000500000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGGCATTAAGGTGT--AAC-AAGTT.........................................................................................................................................................................................................................................26200.2550500000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTATTGGGGTATATTAGATTTG..............................................................................25200.2550410000000
..............................................................................................................................................................................................................................................GCCAACAAAGGGCTAGA--------ACGA................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040400000000
...............................................................................................................................................................................................................CTCAAGAGAACCACCAAATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040400000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAATCGTTTCCGACCCC.............................23200.2040400000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGGGGTATATTAGATTT...............................................................................21200.2040400000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGTAA........................................................24200.2040000004000
.....................................................................................................................................................................................................................................................AAGGGCTAGA--------ACGATGAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000010003
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATGTGTGTAACG......................................................28200.1530000003000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCA--------AAATGAGTATTGGGGTATAT......................................................................................26200.1530300000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGGTGT--AAC-AAGTTTGCA.....................................................................................................................................................................................................................................20200.1530300000000
...................................................................................................................................................................................................................................................CAAAGGGCTAGA--------ACGATGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000021
.........................................................................................................................................................................................................................................................GCTAGA--------ACGATGAAATGTCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530300000000
................................................................................................................................................................................................................TCAAGAGAACCACCAAATAGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530030000000
..............................................................................................................................................................................................................TCTCAAGAGAACCACCAAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530300000000
...........................................................................................................................................................................................................................ACCAAATAGGGTATAGGGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530100001010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGTAACG......................................................26200.1530000003000
......................................................................................................................................TC----------------------------------------------------------------------TCTCAAGAGAACCACCAAATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020010100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAAGGTGT--AAC-AAGTTTG.......................................................................................................................................................................................................................................21200.1020200000000
................................................................................................................................................................................................................................................CAACAAAGGGCTAGA--------ACGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020100010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGAGGCATTAAGGTGT--AA................................................................................................................................................................................................................................................21200.1020200000000
....................................................................................................................................................................................................................................................AAAGGGCTAGA--------ACGATGAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000002000
.....................................................................................................................................................................................................................................GTATAGGGAGCCAACAAAGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
...................................................................................................................................................................................................................................................CAAAGGGCTAGA--------ACGATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000020
...................................................................................................................................................................................................................................................CAAAGGGCTAGA--------ACGATGAAATGTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020000000020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGT..............................................................18200.1020200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAAATGGATGTGTG...........................................................19200.1020200000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGTGT--AAC-AAGTTTGCA.....................................................................................................................................................................................................................................21200.1020000000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCGTTTCCGACCCCATAAAGT--....................24200.1020200000000
................................................................................................................................................................................................................TCAAGAGAACCACCAAATAGGGTATAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020100100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGAGGCATTAAGGTGT--AAC-AAG...........................................................................................................................................................................................................................................25200.1020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAATGGATGTGTGT..........................................................25200.1020000000200
.................................................................................................................................................................................................................CAAGAGAACCACCAAATAGGGTATAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCATTAAGGTGT--AAC-AAGTTTG.......................................................................................................................................................................................................................................25200.1020200000000
..................................................................................................................................................................................................................AAGAGAACCACCAAATAGGGTATAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020110000000
................................................................................................................................................................................................................TCAAGAGAACCACCAAATAGGGTATAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.1020200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCCATA..........................22200.1020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCATTAAGGTGT--AAC-AAGTT.........................................................................................................................................................................................................................................24200.1020020000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGTAACGT.....................................................27200.1020200000000
.................................................................................................................................................................................................................................................AACAAAGGGCTAGA--------ACGATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATATCCG---------------------------ATACTCA--------AA........................................................................................................21130.0810100000000
...................................................................................................................................................................................................................................GGGTATAGGGAGCCAACAAAGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................23190.0510000000010
..................................................................................................................................................................................................................................AGGGTATAGGGAGCCAACAAAGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................25190.0510000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAAGGTGT--AAC-AAGTTT........................................................................................................................................................................................................................................21200.0510000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGAGGCATTAAGGTGT--AAC-AAT...........................................................................................................................................................................................................................................25200.0510100000000
.............................................................................................................................................................................................................................................AGCCAACAAAGGGCTAGA--------ACGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000100
...................................................................................................................................................................................................................AGAGAACCACCAAATAGGGTATAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA--------AAATGAGTATTGGGGTAT........................................................................................21200.0510000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAAGGAATCGTTTCCGACCCCA............................27200.0510000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGTGT--AAC-AAGTTTGCAC....................................................................................................................................................................................................................................22200.0510000100000
..............................................................................................................................................................................................................TCTCAAGAGAACCACCAAATAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGAAAATGGATGTGTG...........................................................20200.0510000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCATTAAGGTGT--AAC-AAGTTTGCA.....................................................................................................................................................................................................................................27200.0510100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCGTTTCCGAC................................28200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATTAAGGTGT--AAC-AAGTTTG.......................................................................................................................................................................................................................................24200.0510100000000
...................................................................................................................................................................................................................................................CAAAGGGCTAGA--------ACGATGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000001
................................................................................................................................................................................................................................ATAGGGTATAGGGAGCCAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCATTAAGGTGT--AAC-AAGT..........................................................................................................................................................................................................................................22200.0510100000000
........................................................................................................................................................................................................................................TAGGGAGCCAACAAAGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAATGG..................................................................20200.0510000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTATATTAGATTTGTGGTGAA.......................................................................24200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAATGGATG...............................................................23200.0510100000000
...............................................................................................................................................................................................................CTCAAGAGAACCACCAAATAGGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510010000000
.................................................................................................................................................................................................................CAAGAGAACCACCAAATAGGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------TCTTG---------------------------CTTA--AGCCGGTTGTGTT..............................................................................................................................................................25200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGATTTGTGGTGAAAATGGATG...............................................................27200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAGGTGT--AAC-AAGTTTG.......................................................................................................................................................................................................................................20200.0510100000000
........................................................................................................................................................................................................................................TAGGGAGCCAACAAAGGGCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCATTAAGGTGT--AAC-AA............................................................................................................................................................................................................................................21200.0510100000000
......................................................................................................................................................................................................................................................AGGGCTAGA--------ACGATGAAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAAT....................................................................21200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCA--------AAATGAGTATTGGGG...........................................................................................22200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG---------------------------CTTA--AGCCGGTTGTG................................................................................................................................................................18200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGATGTGTGTAACGTC....................................................21200.0510001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCGAGGCATTAAGGTGT--A.................................................................................................................................................................................................................................................21200.0510100000000
......................................................................................................................................TC----------------------------------------------------------------------TCTCAAGAGAACCACCAAATAGGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
..........................................................................................................................................................................................................................CACCAAATAGGGTATAGGGAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACCCCATA..........................28200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCATTAAGGTGT--AAC-AAGTTTGC......................................................................................................................................................................................................................................27200.0510000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGTGTGTA.........................................................24200.0510000000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGGTGT--AAC-AAGTTTG.......................................................................................................................................................................................................................................19200.0510000001000
.........................................................................................................................................................................................................................................................GCTAGA--------ACGATGAAATGTCATA....................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000010
...........................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------------------------------------ATTTCGAGGCATTAAGGTGT--..................................................................................................................................................................................................................................................21200.0510010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGGCATTAAGGTGT--A.................................................................................................................................................................................................................................................19200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCATTAAGGTGT--AAC-AA............................................................................................................................................................................................................................................20200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTGAAAATGGATGTGTGTAAC.......................................................25200.0510000001000
.................................................................................................................................................................................................................................................AACAAAGGGCTAGA--------ACGATGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0511000000000
......................................................................................................................................TC----------------------------------------------------------------------TCTCAAGAGAACCACCAAATAGGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0510010000000
.............................................................................................................................................................................................................................................AGCCAACAAAGGGCTAGA--------ACGA................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCCAGAAGGAATCGTTTCC...................................22200.0510001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTGAAAATGGATGTG.............................................................22200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGGCATTAAGGTGT--AAC-AA............................................................................................................................................................................................................................................22200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTGAAAATGGAT................................................................23200.0510000000010
.......................................................................................................................................................................................................................................................................ACGATGAAATGTCATAACT-----------------------------T...................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000010
...................................................................................................................................................................................................................................................CAAAGGGCTAGA--------ACGA................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.0510000000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------TCTTG---------------------------CTTA--AGCCGGTT...................................................................................................................................................................20200.0510100000000
..................................................................................................................................................................................................................AAGAGAACCACCAAATAGGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGACCCCATAAAGT--ATATA...............20200.0510100000000
..........................................................................................................................................................................................................................................................CTAGA--------ACGATGAAATGTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG---------------------------CTTA--AGCCGGTTGTGTTTT............................................................................................................................................................22200.0510100000000
.................................................................................................................................................................................................................................................AACAAAGGGCTAGA--------ACGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000010
.......................................................................................................................................C----------------------------------------------------------------------TCTCAAGAGAACCACCAAATAGGGTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAATGGATGT..............................................................24200.0510100000000
.................................................................................................................................................................................................................CAAGAGAACCACCAAATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACCCCATAAAGT--ATATAT..............24200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------TCTTG---------------------------CTTA--AGCCGGTTG..................................................................................................................................................................21200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------------------------------------ATTTCGAGGCATTAAGGTGT--AAC-AAT...........................................................................................................................................................................................................................................27200.0510000100000
..............................................................................................................................................................................................................TCTCAAGAGAACCACCAAATAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTAAGGTGT--AAC-AAGTTTG.......................................................................................................................................................................................................................................22200.0510000001000
droPer2
TCCC--AGTTA------------------------AGGCC-CTGCAG-TA----------------------------------------------------------------------------------AATC----------------------------------------------------------------------TCTCAAGAGAACCACCAAATAGGGTATAGGGAGCCAACAAAGGGCTAGA--------ACGATGAAATGTCATAACT-----------------------------TT-----------------TC-------------------------------------------------------------------------------------------------------ATTTCGAGGCATTAAGGTGT--AAC-AAGTTTGCACCGCTTCCAGC---------TCTTG---------------------------CTTA--AGCCGGTTGTGTTTTTATATCCG---------------------------ATACTCA--------AAATGAGTATTGGGGTATATTAGATTTGTGGTGAAAATGGATGTGTGTGACGTCCAGAAGGAATCGTTTCCGACCGCATAAAGT--ATATATATTCTTGATCAGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................TCAAGAGAACCACCAAATAGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22202.45490490000
..............................................................................................................................................................................................................TCTCAAGAGAACCACCAAATAGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24202.35471460000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCCAGAAGGAATCGTTTCCGAC................................26100.202020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCCAGAAGGAATCGTTTCC...................................23100.202020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTGAAAATGGATG...............................................................19200.153000003
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAATGGATGTGTGTGAC.......................................................2070.141010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCCAGAAGGAATCGTTTCCG..................................24100.101010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTGAAAATGGA.................................................................24200.102020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTGTGTGACGTCCAGA................................................21130.081010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTTCCGACCGCATAAA........................20170.061000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTG---------------------------CTTA--AGCCGGTTGTGT...............................................................................................................................................................21200.051010000
........................................................................................................................................................................................................................................TAGGGAGCCAACAAAGGGCTAGA--------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTGAAAATGG..................................................................20200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTGAAAATGGATGTGT............................................................25200.051000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTGAAAATGGATGT..............................................................19200.051000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCCG---------------------------ATACTCA--------AAATGAGT..................................................................................................22200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCCAGAAGGAATCGTTTCCGAAA...............................27200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTCCAGAAGGAATCGTTTCCGACA...............................27200.051010000
droAna3
CTCA--AAAGC--T------A--------------TC--T-CCACGT-------------------------------------------------------------------------------GCAATATAAATAAGATCAA-G-------TGA---------------------------------------------------------------------------------GCA-----------------------------------------------------------AATTTTAAAAAAATAATTTT----------TT--------------------------------------------------TCTTTAA---ACAAAAAAT----------------T---------TGTTT----------------------------TCA-------------------------------------------G----------------------------GGTATTTTTATACCCTTGCAG------------------------------------------------ACGGTATTATAATTTTGG--TCA-----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATCAGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACGCAGTGAAGGAGACATCTC....................................25203.05610610000
..............................................T-------------------------------------------------------------------------------GCAATATAAATAAGATCAA-G-------TGA---------------------------------------------------------------------------------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.501010000
............................................CGT-------------------------------------------------------------------------------GCAATATAAATAAGATCAA-G-------TGA---------------------------------------------------------------------------------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.501000010
....................................................................................................................................................................................................................................................................................................................................................................................................A---ACAAAAAAT----------------T---------TGTTT----------------------------TCA-------------------------------------------G----------------------------G...................................................................................................................................................................2120.501010000
...............................................................................................................................CAATATAAATAAGATCAA-G-------TGA---------------------------------------------------------------------------------GCA-----------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................2520.501100000
..............................................T-------------------------------------------------------------------------------GCAATATAAATAAGATCAA-G-------TGA---------------------------------------------------------------------------------GCA-----------------------------------------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................2820.501010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGTGCAACGCAGTGAAGGAG...........................................24200.357070000
.TCA--AAAGC--T------A--------------TC--T-CCACGT-------------------------------------------------------------------------------GCAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.153030000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATAATTTTGG--TCA-----AAAGTGTGCA.........................................................27200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGG--TCA-----AAAGTGTGCAACGC.....................................................22200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAAGTGTGCAACGCAGTGAAGG.............................................23200.051000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATCTCCGACCCTATA..........................19200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG--TCA-----AAAGTGTGCAACGCAG...................................................22200.051000001
droBip1
GCGT--GGTCC------------------------GGCCC-CCG---------------------------------------------------------------------------------------------------------------------------------------------------ATGTGGCAGCTGAAAGCCAAACAGAA--GCCAAGCAAA--------------------ACAAGCTGGA----ATTAT--------GAGAAGTGGAGGAGAACGTTGGCAAAATT-----------------AAAGAAAA--C-----T------GTGGAAAGCTCTTCA----------------------------A---T---------------------------------------------------------------------------------------------------------TTTCATTCCCATTTT------CC-CA-----------GTTTTTTTTATACCCTTGCAG------------------------------------------------AGGGTATTATAATTTTGT--CCA-----AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATCAGGASizeHit CountTotal NormTotal
No Reads
droKik1
AAAC--AATAA---------------------AAAA---CATTACAA-----ATT-----AAAGGAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----ATTAT--------AAGAATATA---------------AATTTAAAAATAATAATTTTAA----A--A--ATT---------------------------------TAATA-TTTTATTTT--TTATATATTTAAATTT-----------------------------------------------------------------------ATT-----------------------------------------------T-----------TTTTAGTTTTGTGCCCTTGCAG------------------------------------------------A--GTGTTTTAATTTGAG--TCA-----GAAGCTTGAAAGGCAGTGAAGGAGTCATTTCCGACCCTATAAACC--ATATATATTCTTTATCAGCASizeHit CountTotal NormTotal
No Reads
droFic1
AAAC--ATCAC----------------------------------GTACA---TTCACTCACCGGGTCTACGCT----------------------------------------------------------------AGTTAGAAGTTTTCAGTTTGCG--------------------------------------------------------------------------------------------------------------------------------------------TATTTAATAAAAAAGATTTTAA----A--G--ATT--------------------------------C----------------TCCAA---A-----------------A--------------------------------------------------------------------CTCA--------------------------------------------------TTGTTATTTTTATACCCTTGCAG--------------------------------AGCAA----------AAGGATATTATAATTTCAG--TCA-----GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGT--ATATATATTCTTGATCAGCASizeHit CountTotal NormTotal
No Reads
droEle1
GTTG--TT--CGA---------CCTA---------TTG-G-TCGCATTTAAT-TTCTT--GGAGGCCCAACGATACTTTCACAGTAAGT-------------------------------------AAATTATATT----------------------------------------------------------------------TTATAAAATGAAAACTAAATATATAA------------------------------------------------------------------------------TTATTATTAT----------TT--------------------------------------------------ACATA---TGTTTAGAAAT----------------A---------ATTTT----------------------------TTA-------------------------------------------T----------------------------ATAATAATTATACCCTTGCAG------------------------------------------------AGGGTATTCTAATTTCAG--TCA-----GAAGTTTGAAACGCAGTGAAGGAGACATCTACGACCCTATAAAGT--ATATATATTCTTGATCAGCASizeHit CountTotal NormTotal
No Reads
droRho1
ATGC--AAGCT---------A--------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C----------------ATAAACGAAACAAACAAAAGACAGATTCGA--------ATTAAAGTT----------------------------------------------ATAAAAAA--ATT---------------------------------TGACA-TTAAATTTG-------TGTTTGAATTTAAGTTATCAATCAGAAATTATGGCCA-----TCA-----AAGGCTGTGATG---------------------------CC-A--------------------------------------------------TCGCGATTTTTATACCCTTGCAG------------------------------------------------AGGGTATTATAATTTTGG--CCA-----GAAGTTTGTAACGCAGTGAAGAAGACGTTTCCGACCCTATAAAGT--ATATATATTCTTGATCAGGASizeHit CountTotal NormTotal
No Reads
droBia1
AACCTGAAGCT---------AAA---TAGCG-----------CACAAATTTT-TTCCA--GCGGCAGCTACGAAGAATTAGGAGCA--------------------------------------------------TCAAATCAA-T-------TCG-------------GCAAC--------------------------------------------------------------------------------------------------------A------------------------------------ATTACA---------------------------------------------------------------------------------------------------------------------------------------------------A----------C-----------------AACCACTACCACTTA------TC-TA----AAAAA--TGTAGTTTTACACCGTTGCAG------------------------------------------------ACGATTTAATTATTTCAG--TCA-----GAAGTTTGCAACGAAGTGAAGGCGGCATTTCCGACCCCATAAAGA--ATCAATATTCTTCATAAGGASizeHit CountTotal NormTotal
No Reads
droTak1
AGCC--AAAGT--T------G--------------GA--G-CCACATGCAA-ATGCCA--GCGCCAGC---------------------ATTAGGCAAGTGCACTGAGAAAAATAGGAAAACAATT----------TAATTGGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAG----A--A--AA--------------------------------TATAAAAAATTAAT-TGCTTAAA---ATATAACA-----------------T---------T----------------------------------------------------------------TTG---------------------------GTCA--TGT---TGGTGATATTATACCCTTGCAG------------------------------------------------AGGGTATTATAATTTCAG--TCA-----GATGTTAGCAACGCAGTGAAGGAGACGTATCCGACCACATAAAGT--ATATATATTCTTGATCAGCASizeHit CountTotal NormTotal
No Reads
droEug1
CAAT--TAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATT-----------------ATAAATTA--T-----TTACAGCTTGTAAAGTTTTTCATAAAATGTTACTT--------------------------------------------------------------------------------------------------TAAT----------------------------------------------------------TTCTTCTTTTTATACCCG---------------------------TTACTTTTAGAGTAA----------AAGGGTATACTGTATTCGT--TGA-----AAAGTATGAAACAGGTAGAAGGAAGCTTTTCTGACCCTATAAAGT--ATATATATTCTTGATCACGASizeHit CountTotal NormTotal
No Reads
dm3
AAAA--AT-AT---------ATA---TAATTAAAAA--------CAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-----T------TTTACAAACCA----------------------------------------------------------------------------CCT-----TAAAT-----------------------------------------------------TGTCATGCCC-------------------------T----------------TTGGAAAGTGGTTAAAATTGTGTACCCGTTTATTGTAGATTAAAATGGGATATAATACTATACTAGATTCGT--TGA-----AAAGTATGTAACAGGTAGAAGAAAGCGTTTTCAACCATATAAAGT--ATATAAATTCCTGATCAGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGTAGAAGAAAGC.........................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGA-----AAAGTATGTAACAGGTAGAAGAAT...........................................2870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGTAGAAGAAAGCGTTT.....................................2270.1410000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----AAAGTATGTAACAGGTAGAAGAA............................................2570.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-----AAAGTATGTAACAGGTAGAAGA.............................................2570.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGA-----AAAGTATGTAACAGGTAGAAGAT............................................2780.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGTAGAAGAAAGCGTTT.....................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGTAGAAGAAAGCGTT......................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGTAGAAGAAAT..........................................24100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGA-----AAAGTATGTAACAGGTAG.................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGT--TGA-----AAAGTATGTAACA......................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT--TGA-----AAAGTATGTAACAGGTAGA................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAAGTATGTAACAGGTAGAAG..............................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGT--TGA-----AAAG...............................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGT--TGA-----A..................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT--TGA-----AAAGTATGTAACAGGTAGC................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGTAGAAGAAAA..........................................22130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGAAAGT.........................................22140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGTAGAAGAAAGT.........................................20160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-----AAAGTATGTAACAGGTAGAA...............................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT--TGA-----AAAGTATGTAACAG.....................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGT--TGA-----AA.................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGT--TGA-----AAAGTATGTAACA......................................................30200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGA-----AAAGTATGTAACAGGTAGAAGTC............................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGT--TGA-----AAAGTATGTAACAGGTA..................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGT--TGA-----AAAGTATGTAA........................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGA-----AAAGTATGTAACAGGTAGAAGT.............................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGT--TGA-----AAAGTATGTA.........................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGT--TGA-----AAAGTATG...........................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGT--TGA-----AAAGTA.............................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGT--TGA-----AAAGTATGT..........................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCGT--TGA-----AAAGTAT............................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGT--TGA-----AAAGT..............................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
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droSim2
AATT--AATTA------------------------AA---------------------------------------------------------------------------------------------------TCAAATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAG--------------------------AAACATTAATTCTAGGACTT---------------CTTAAA---A-----------------ACCGAATT---------TTTTG----------------------------TCA-------------------------------------------T------AACATTGT-CA-----------CTTGTTTTTATTCCCG---------------------------AAACTCGT------------------AAAGTAAACAAGATCTGT--CGA-----AAAGTATGTAGCAGATAGAAGGAAACGTTACCGACCACATAAAAT----GTATATTCTTTATCAAGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------AAAGTAAACAAGATCTGT--CGA-----AAAGT..............................................................2711.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAAGTATGTAGCAGATAGAAGG.............................................2311.00100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAAGTATGTAGCAGATAGT................................................2011.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAAGTATGTAGCAG.....................................................15150.07100000000001000000
droSec2
AAGG--TTAGT---------A--------------CGGTC-TTAT-----------------------------------------------------------------AAAATGGAGATCAACA----------TCAAATAAACTTTTAGAGTTTACAGACCTACTTCGCAGGTGTCATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACTAACTTTAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------CTGCACACAC----CTT----------------------------------------------------------------------CGTTTTATATACCCGT--TGA-----AAAGTATGTAAAAGGCAGAAGGAATCGTTACGGACCATATAAAGTCTATATATATTCTTGATCAGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..GG--TTAGT---------A--------------CGGTC-TTAT-----------------------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TGA-----AAAGTATGTAAAAGGCAGA................................................23120.0810010
droYak3
CATC--ATCCA---CAATTTATA---TGATTAGAAA--------CTT----------------------------------------------------------------------------------------------------------------------ATTTTGGAGGTATGGTTTAGTTGACACAGTAGTTAGTGACAATTGAAG---ACAATTTACTTCC--------------------G-----CAGA---------------------------------------------------------ATTCAA----G--G--ATT--------------------------------T--------------------------------------------------------------------------------TATG---------------------------CT-A----------------------------------------------AA---TAGTATTATAAAGTCTTTGGTA------------------------------------A----------AAGGGTATACTAGATTCGT--TGA-----AAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGT--ATATATATTCTTGATCAGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT--TGA-----AAAGTATGTAACAGGCAGA................................................25200.40808000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTT......................................23200.25500000000005
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGT--TGA-----AAAGTATGTAACAGGCA..................................................27200.25504100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCGTTTCCGACCAT.............................30200.15300000000003
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGGTA------------------------------------A----------AAGGGTATACTAGATTCGT--...........................................................................2890.11100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGACCATATAAAGT--AT..................21200.10202000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGA19200.10220000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTTTCCGACCATA............................26200.05100010000000
droEre2
GTAA-GAATTA------------------------AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTT--------------------------------------AAGAAATAGGGAAAA-------------------------------------------------------------------------------------------------------TATGGCCA-----TTATACCTGGAGTATTAATGTATTCAAA-AGATATACAAAGCT--------------------------------------------CTGTATCTTT----TTTGGATTTTTATACCCA---------------------------TCAGTCGTAGATT-A----------AAGGGTATACTAGATTCGC--TGA-----AAAGTATGTAACAGGTAGAAGGAAACGTTTCCGATCCCATATAGT--ATATATATTTTTGATCAGAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................ATAGGGAAAA-------------------------------------------------------------------------------------------------------TATGGCCA-----TT.........................................................................................................................................................................................................................................................................2011.0010100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCCA---------------------------TCAGTCGTAGATT-A----------AAGGGT..........................................................................................2711.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGC--TGA-----...................................................................18150.0710000010

Generated: 05/19/2015 at 12:03 PM