ID:

dvi_2661

 Coordinate:

scaffold_12822:3067304-3067586 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.2 -12.9 -12.9

Flybase annnotation

exon [dvir_GLEANR_14480:4]; CDS [Dvir\GJ14537-cds]; CDS [Dvir\GJ14537-cds]; exon [dvir_GLEANR_14480:3]; intron [Dvir\GJ14537-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#########################-------------------------
ACTGCAATGGAGTATAAGATACACTGTGATAGCCTTAAATACGTTTCAATGTACGTATTATACATTTACGGTCATACATTACGAATATCGTATATCGTAACACGCAATCGAATAACATTCGTCTATGCATGCCCCACAGTCGATATCGTATTCTAAATAAACAGTTGCCAAATAGAAATACGCGAAATATCAGAGCCTGGCAATGTTGACGATAACCATGATGATCTGATGATGTTCTGATGATGATCCGGGCAGCAATTGGTCACATTTTTGGGCAACTTCATTTGTATAGATAGCTAATCGTTAATGCAATTTTCTTCTTCTATTTTGCAGTAATAAAGGCGCATTGAAAAGCTGAAATTCAGTGAATAATTACAACAAAC
*********************************************************************************************************************************************************************************************************************....(((.(((((...((.(((((.(((....))).))))).))...))))))))......************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M061
embryo
 GSM1528803
follicle cells		 SRR1106720
embryo_8-10h
 SRR1106730
embryo_16-30h
 M047
female body
 SRR060656
9x160_ovaries_total
 M028
head
 SRR060660
Argentina_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060688
160_ovaries_total
 SRR1106724
embryo_12-14h
 SRR060683
160_testes_total
 M027
male body		 SRR060654
160x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR1106718
embryo_6-8h
 SRR1106721
embryo_10-12h
 SRR1106727
larvae
 SRR060665
9_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 V053
head
 SRR060658
140_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060670
9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR1106716
embryo_4-6h
 SRR1106717
embryo_6-8h
 SRR1106723
embryo_12-14h
 SRR1106725
embryo_14-16h
 SRR1106726
embryo_14-16h
 SRR1106729
mixed whole adult body
 SRR060674
9x140_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
.....................................................................................................................................................................................................................AACCATGATGATCTGATGATGTTCTGATG............................................................................................................................................. 29 0 1 36.00 36 17 12 0 0 0 0 2 2 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACAATGATGATCTGATGATGTTCTGATGA............................................................................................................................................ 30 1 1 15.00 15 0 0 0 2 6 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0
.....................................................................................................................................................................................................................AACAATGATGATCTGATGATGTTCTGATG............................................................................................................................................. 29 1 1 5.00 5 0 0 0 0 0 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................ATGATGATCTGATGATGTTCTGATGA............................................................................................................................................ 26 0 1 5.00 5 0 0 0 0 0 0 0 1 0 0 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACTATGATGATCTGATGATGTTCTGATG............................................................................................................................................. 29 1 1 4.00 4 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACTATGATGATCTGATGATGTTCTGAT.............................................................................................................................................. 28 1 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCTGATGATGTTCTGATG............................................................................................................................................. 18 0 1 3.00 3 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TGATCTGATGATGTTCTGATG............................................................................................................................................. 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGATGATCTGATGATGTTCT................................................................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAACATGATGATCTGATGATGTTCTGATG............................................................................................................................................. 29 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGATGATCTGATGATGTTCTGATG............................................................................................................................................. 25 0 1 2.00 2 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACTATGATGATCTGATGATGTTCTGA............................................................................................................................................... 27 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................AGCAATTGGTCACATTTTTGG............................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACAATGATGATCTGCTGATGTTCTGATGA............................................................................................................................................ 30 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGATGTTCTGATGATGATCCGT.................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GAGTATAAGATACACTGTGATAGCCT............................................................................................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................AATAACATTCGTCTATGCATG............................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATAACAATGATGATCTGATGATGTTCTGATG............................................................................................................................................. 31 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACAATGATGATCTAATGATGTTCTGATGAT........................................................................................................................................... 31 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................AGGATGATCTGTTGTTGTTCTGATG............................................................................................................................................. 25 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACCATGATGATCTGATGATG..................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................CACGCAATCGAATAACATTCG...................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GAGTATAAGATACACTGTGAT................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GATCTGATGATGTGCTGATGA............................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AATAATGATGATCTGATGATGTTCTGATGAT........................................................................................................................................... 31 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACCATGATGATCTGATGA....................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACTATGATGATCTGATGATGTTCTGATGAA........................................................................................................................................... 31 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TATGATGATCTGATGATGTTCTGAA.............................................................................................................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACAATGATGATCTGATGATG..................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GCCAAAAAGAAATACGCGAAATATCA............................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TTTGGGCAACTTCATTTGTAT............................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TACACTGTGATAGCCTTAAATACG.................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TGCATGCCCCACAGTCGAT............................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............ATAAGATACACTGTGATAGCCT............................................................................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACCACGATGATCTGATGATGTTCTGATG............................................................................................................................................. 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACAATGATGATCTGATGATGTTCT................................................................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACAATGATGATCTGATGATGTTCTGATGAT........................................................................................................................................... 31 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................GCATTGAAAAGCTGAAATTCAG.................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TATGATGATCTGAGGATGTTCTGAT.............................................................................................................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACAATGATGATCTGATGATGTTCTGA............................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................TCTGATGATGTTCTGATGATGAA........................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TTCTATTTTGCAGTAATAAAG.......................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACAATGATGATCTTATGATGTTCTGATG............................................................................................................................................. 29 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................ATTTGTATAGATAGCTAATCG................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACAATGATGATCTGATGATGTTCTGATGATG.......................................................................................................................................... 32 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCTGATGATGTTCTGATGA............................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATAGCAATGATGATCTGATG........................................................................................................................................................ 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................GTAGACGATAACCACGAT................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TACGCGAAATGTCGGAGCCTG........................................................................................................................................................................................ 21 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................ATAAAAATGATGATCTGATGA....................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AACATCAGAGCTTGGCAATG.................................................................................................................................................................................. 20 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................AACAATGATGATCTGATG........................................................................................................................................................ 18 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TTGATGCAATTTTCCTCTCC............................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................TAGCACATCGTTAATTCAAT...................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................ATTAAGTGAATAATTAAAAC.... 20 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGACGTTACCTCATATTCTATGTGACACTATCGGAATTTATGCAAAGTTACATGCATAATATGTAAATGCCAGTATGTAATGCTTATAGCATATAGCATTGTGCGTTAGCTTATTGTAAGCAGATACGTACGGGGTGTCAGCTATAGCATAAGATTTATTTGTCAACGGTTTATCTTTATGCGCTTTATAGTCTCGGACCGTTACAACTGCTATTGGTACTACTAGACTACTACAAGACTACTACTAGGCCCGTCGTTAACCAGTGTAAAAACCCGTTGAAGTAAACATATCTATCGATTAGCAATTACGTTAAAAGAAGAAGATAAAACGTCATTATTTCCGCGTAACTTTTCGACTTTAAGTCACTTATTAATGTTGTTTG
*************************************************************************************************************....(((.(((((...((.(((((.(((....))).))))).))...))))))))......********************************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060676
9xArg_ovaries_total
 V116
male body		 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060654
160x9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060689
160x9_testes_total
 V053
head
 SRR060682
9x140_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
...........................................................................................................................................................................................................................CTACTAGACTACTACAAGACT............................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAAAACCCGTTGAAGTGAACT............................................................................................... 21 2 2 1.50 3 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................TGGTGTCAGCTTTAGCATA........................................................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GGCCCGTCGTTAACCAGTGTA................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GGCCCGTCGTTAACCAGTGTG................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................AAACCCGTTGAAGTAAACATAT............................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TACGGGGTGTCAGCTATAGCATAAGGTT................................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ACGGGGTGTCAGCTATAGCAT......................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GTCAACGGTTTATCTTTATG.......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GTGCGTTAGCTTATTGTAAGC...................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CTCGGACCGTTACAACTGCTGTTGTT..................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................CGTACGGGGTGTCAGCTATA............................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................GGGGTGTCAGCTATAGCATAA....................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................ATCGGTTAGCAATTACGTTG...................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................CAGTGTAAAAACCCGTTGAAG..................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TACTAGACTACTACAAGACTA.............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........CTTATTCTATGTGACACTGTCGGAAT.......................................................................................................................................................................................................................................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................CCCGTTGAAGTAAACATATCT.......................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................TCTATGTGACACTATCGGAAT.......................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TGTCAACGGTTTGTCTTTATG.......................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CCGTTACAACTGCTACTGGGC.................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................CCGTTACAATTGCTACTGGGA.................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................ATACCAGTATGTAAAGCT........................................................................................................................................................................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................CTAGTGCTAGGCCCGTCCTT............................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................GCCTAACTCTTCGACTTGAA..................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................CCGTTATAATTGCTATTGGTC.................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................AAATACCCGTTGAAGTGAACT............................................................................................... 21 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TATGTAAAGCTTCTAGCA.................................................................................................................................................................................................................................................................................................... 18 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AAAGACCCGTTGAAGTGAACT............................................................................................... 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................ACACTATCGGCAATGATG..................................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12822:3067254-3067636 + dvi_2661 ACTGCAATGGAGTATAAGATACACTGTGATAGCCTTAAATACGTTTCAATGTACGTATTA-----------------------------TACA----------------------------------------TTTACGGTCATACATTACGAATATC--GTATA-----------------TC--------------------------GTAACACGCAA--------------TCGAATAACATTCGTC---T--ATGCATGCCCCAC---AGTCGATATCGTATTCTAAATAA------------------ACAGTTGCCAAAT----AGAAATACGCGAAATAT---------CAGAGCCTG---------GCAATGTTGACGATAACCATGATG--ATCTGATG---ATGTTCTG---------------------------A------TGATGATCCGGGCA--GCA---------------ATTGGTCACATTTTTGGGCAA---CTTC-ATTTGTATAGATAGCTAATCGTTA----ATG-----------------------CAATTTTCT-----TCTT----CTAT-TTTGCAGTAATAAA-GGCGCATTGAAAA---GCTGAAATTCAGTGAATAATTACA-A---CAAAC
droMoj3 scaffold_6540:7331293-7331679 - ACTGCAATGGAGTATAAGATACACTGTGATAGCCTTAAATACGTTTCAATGTAAGTATGAACA----------------------------------------------------------------------G-CCCGAACAACCATTTCG-----------------------ATATTTT--CAGCATCTCACATCCTT----------------------------------CTCAATAATGACTGTAA--------CAGGCCCCAC---ACTCGTTGTCGCATACTGAGTAGT------------------TCGTTGTATAAT----AGAAATTTCAGACATATTAGATATGTCCGATCCTG---------GCACCGTTAAAACGAATAATGATG--AA--GATT---ATGC-ATGGGGAAGA----------------------------------CTGGGCTGGGCAAGCGAC-ACTCAAGCTTTGGCAA----------------CTTT-ATTTAGTTCTTGAGCTAATTAATT----AAA-----------------------CAAAATTTTTC---TTTC--TTTTAT-TTCGCAGTAATAAA-GGCGCATTGAAAA---GCTGAAATTCAATGAATAACTACAAA---C----
droGri2 scaffold_14906:4608648-4608995 + ACTGCAATGGAGTATAAGATACACTGTGATAGCCTTAAATACGTTTCAATGTAAGTATCCAGA--------------------------TGCA----------------------------------------TTTG-----------------------------------------------CTGCAACCCACCCACTTACAGCACCAGC-----AATGTTCAACATAGTAAAATAAGTACCAACTGCCT--------TAGGCCCCAC---AGTCATTATCGAGTTGCAAATAAT---TCTTAT--------AAAATTGGAAATT----GGAAAT-------------------------------------------------------------------------------------TGAAATCTTGGTGACGCTGATG----------CAACAAATT------GGCAGGGGAA-TCACAGTCATTTGCAA----------------C---AAATTAATTCTTGAACTAATCGAAT------G-----------------------AAATATTCC-----TCTT----GTAT-TTTGCAGTAATAAA-GGCGCATTGAAAA---GCTGAAATTCAGTGAATAACTACAAA---C----
droWil2 scf2_1100000004902:6017241-6017692 + dwi_2528 ACGGCAATGGAGTATAAAATACACTGTGATAGCCTTAAATATGTTTCAATGTAAGTACAA--------------------CAAACTAGTTTAACTTA-AGCTAGAGCAGCAAAAAAGAAAAAAAACAAACAAAATTG------------T--CA-AGACCTACCTAACTATCTTAATGGT-T--AATCA-------------------------------------------------------CCTTGTACCTTGCACCCAGGCCGCGGTTCTATCGTAACCGAAGATTGGGTCACTATCTAATTCGAAGTAGATATTCATTGAATACCAATAAATAATCAGAATAT---------C--------AAGAATCTCTCTAGGTGGACAAAA------------------------------------ATATCTGTTAA----ACT---------------------------CA---------------CTTTCGCACATCTTTAGA--AATATACTTATACGAAT----ATGTATTTTT--GTTAATTCAATTTTAATATCTCTTATTTATTTATACTGT-----TTTCTTATTTCG-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTTTAAACAACAGAA
dp5 2:14414999-14415067 - ACTACAATGGAGTATAAGATACACTGTGATAGCCTTAAATATGTTTCAAAGTAAGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT-GT---ATGTA
droPer2 scaffold_0:6012001-6012077 + AAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-----TTTC----TTAT-ATTGCAGTAATAAA-GGCACATTGAAAA---GCTGAAATTCAATGAATAACTATAAACCACAAAA
droAna3 scaffold_12911:3262254-3262331 + TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTTATTTTC----GTATTTTTTCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGCCAATAACTATAAA---CAAAA
droBip1 scf7180000396640:126665-126752 + CTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATT----ATA-----------------------AAATGTTAC-----TATC----TTAT-TTTTCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGCCAATAACTATAAA---CAAAA
droKik1 scf7180000302778:296941-297025 - ATCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------TAATATTCTTCTTTTTTC----TTAT-TTTCCAGTAATAAA-GGCCCCTTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAA
droFic1 scf7180000453912:116646-116756 + GGTGA--TG----------------------GTCC-------------------------------------------------------------------------------------------------------------------------------------------------------GAAACCGACCCCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTGGCAG---CTTA-ATA------------------------------------------------------TGTCA------TAGC----GTAT-TTT-TG---ATGGA-AA-ATATGAAAAAGTAAACAAGATTCAGTAAAGAAAAGT-AA---CAGAA
droEle1 scf7180000490967:624471-624582 - GTCCAATTTCTGTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTTTCGGCCAGCTAAAAGT--TAT-----------------------TTATCCTCT-----TTCG----CTTT-CTTGCCCAAATAAA-A---CCTGCAGGC---GCAGCAGTTTGTTGTTTAACTACA-G---CAACA
droRho1 scf7180000762682:3668-3742 + AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT-----TTTT----TTAC-TATGTACATATAAACGAAACGAAAAAAA---GACGACATTAGAAGGAAGGAAGATCG---CAGAA
droBia1 scf7180000302136:235004-235091 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCGAAA----AAC-----------------------CGATATTCT-----TTTC----TTAT-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAACTCAGCGAATAACTATAAA---CAAAA
droTak1 scf7180000414373:161691-161764 + A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTCT-----TCTC----TTAT-TTTACAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAA
droEug1 scf7180000409798:502933-503019 + GACCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAATTAGAA----AAT-----------------------CATATTT---------------TTTC-TTTTCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAA
dm3 chr3R:19889503-19889953 - ACGGCATTGGAGTATAAGATACACTGTGATAGCCTTAAATATGTTTCAATGTAAGTAAGCGGAAAGTAATATTTTAACTGCCAACTAGACAAGCTTGTAGCTATTAGA--------------------------------------------GA-ATATTTGCATAACTATC---------------------------------------------GTTAACTAATCTGGTAATTCGAATACCACCTGTACCAT--ACGCAGGCCGAGA---CGTCAAAATCATAAGCTGGGAAACCTTTTTTATCGAAATCGATACGGCTTTAATTC-------------------AAGATACGGAAAATCATGAT------------------------------ACAAA--AACCCAACTCG-ATTATCAAGATATTAGTGAAGTGAATTAACTTTTAATTAATGATTT------GGGATGGGAA-A--CCAGCAGTGGCCA----------------TGCTCATAAGATCTT----CGAACTAAAT----ATC-----------------------CAATATTCTTCTTCTTCC-TTTTTTT-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAA
droSim2 3r:19428777-19428847 - TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC------TTCC----TTTA-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAA
droSec2 scaffold_0:20230962-20231038 - CAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCTTCTTCC----TTTA-TTTACAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAA
droYak3 3R:26611798-26612232 + ACGGCAATGGAGTATAAGATACACTGTGATAGCCTTAAATATGTTTCAATGTAAGTATGCTTAAGGTTTTACTCACTCTGCCGCCTAGATATACTTGTAGCTGTCAGA--------------------------------------------AATATCTTGTCAT-----------------TT--------------------------GTAATTCGCAAACTAATCTGGTAATTCGAATACCACCTGTACCAT--ACGCAGACCGAGA---CGTCGAAATCGTAAGCTGGGAAACCTCTTTAATAGAAATAAATACGGCTTCAATGC-------------------AAGATATGGCAGATCGTGAT------------------------------G--AA--AACT---CTCG-ATGATCAAGATATTCGTGAATTTAATAAACT------TAATGGTTT------GGGAAGGGAAATTACCAGCACTGGTTA----------------T---CATACAATTAT----CTAATTAAAG----AAC-----------------------CAATTTTCT-----TCTT----TTAT-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAA
droEre2 scaffold_4820:8167123-8167540 + ACGGCAATGGAGTATAAGATACACTGTGATAGCCTTAAATATGTTTCAATGTGAGTATGCGCAAGGTTTTACTATATCCGCCAACTCGATAAGCTTGTAGCTAGCAGA--------------------------------------------GA-ATCATGTCATAATTAAC---------------------------------------------GTAAACTAATCTGGTAATTCGAATACCACCTGTACCAT--ACGCAGACCGAGA---CGTCGAAATCGTAAGCTGGGAAACCTCTTTAATCGAAATCGATACGGCTTTAATTC-------------------AAGATATGGCAGATCATG------------------------------------------------------ATCAAGATATTCGTGAATTTAATAAGCA------TAATGATTT------GGGAAGGGAA-ACCCCAGCATTGGTCA----------------T---TATTTAATCAT----CTAATTAAAT----TAC-----------------------AAATATTCTTCAA--TTT----TTAT-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACTGCAATGGAGTATAAGATACACTGTGATAGCCTTAAATACGTTTCAATGTACGTATTA-----------------------------TACA----------------------------------------TTTACGGTCATACATTACGAATATC--GTATA-----------------TC--------------------------GTAACACGCAA--------------TCGAATAACATTCGTC---T--ATGCATGCCCCAC---AGTCGATATCGTATTCTAAATAA------------------ACAGTTGCCAAAT----AGAAATACGCGAAATAT---------CAGAGCCTG---------GCAATGTTGACGATAACCATGATG--ATCTGATG---ATGTTCTG---------------------------A------TGATGATCCGGGCA--GCA---------------ATTGGTCACATTTTTGGGCAA---CTTC-ATTTGTATAGATAGCTAATCGTTA----ATG-----------------------CAATTTTCT-----TCTT----CTAT-TTTGCAGTAATAAA-GGCGCATTGAAAA---GCTGAAATTCAGTGAATAATTACA-A---CAAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................AACCATGATG--ATCTGATG---ATGTTCTG---------------------------A------TG...............................................................................................................................................................................................................29136.003622012102000000000000000000000000000000000000000000000000000000170
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGATG--ATCTGATG---ATGTTCTG---------------------------A------TGA..............................................................................................................................................................................................................2615.005010000000000000000000000000000000100003000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATG---ATGTTCTG---------------------------A------TG...............................................................................................................................................................................................................1813.003000000000010000000001000000000000100000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TG--ATCTGATG---ATGTTCTG---------------------------A------TG...............................................................................................................................................................................................................2113.003000000001000000000000000001000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGATG--ATCTGATG---ATGTTCT....................................................................................................................................................................................................................................................2112.002000000000000000000000001000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ATGATG--ATCTGATG---ATGTTCTG---------------------------A------TG...............................................................................................................................................................................................................2512.002001000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--GCA---------------ATTGGTCACATTTTTGG..............................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TG---ATGTTCTG---------------------------A------TGATGATCCGT......................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.........GAGTATAAGATACACTGTGATAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................AATAACATTCGTC---T--ATGCATG...............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................AACCATGATG--ATCTGATG---ATG........................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CACGCAA--------------TCGAATAACATTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
.........GAGTATAAGATACACTGTGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................AACCATGATG--ATCTGATG---A..........................................................................................................................................................................................................................................................1911.001000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGGCAA---CTTC-ATTTGTAT..........................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...................TACACTGTGATAGCCTTAAATACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TGCATGCCCCAC---AGTCGAT...............................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.............ATAAGATACACTGTGATAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAAAA---GCTGAAATTCAG......................2211.001000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATG---ATGTTCTG---------------------------A------TGATGAA..........................................................................................................................................................................................................2311.001000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----CTAT-TTTGCAGTAATAAA-G.................................................2111.001000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTATAGATAGCTAATCG.............................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TCTGATG---ATGTTCTG---------------------------A------TGA..............................................................................................................................................................................................................1911.001000000000000000000000000000100000000000000000000000000000000000
droMoj3
ACTGCAATGGAGTATAAGATACACTGTGATAGCCTTAAATACGTTTCAATGTAAGTATGAACA----------------------------------------------------------------------G-CCCGAACAACCATTTCG-----------------------ATATTTT--CAGCATCTCACATCCTT----------------------------------CTCAATAATGACTGTAA--------CAGGCCCCAC---ACTCGTTGTCGCATACTGAGTAGT------------------TCGTTGTATAAT----AGAAATTTCAGACATATTAGATATGTCCGATCCTG---------GCACCGTTAAAACGAATAATGATG--AA--GATT---ATGC-ATGGGGAAGA----------------------------------CTGGGCTGGGCAAGCGAC-ACTCAAGCTTTGGCAA----------------CTTT-ATTTAGTTCTTGAGCTAATTAATT----AAA-----------------------CAAAATTTTTC---TTTC--TTTTAT-TTCGCAGTAATAAA-GGCGCATTGAAAA---GCTGAAATTCAATGAATAACTACAAA---C----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACTGCAATGGAGTATAAGATACACTGTGATAGCCTTAAATACGTTTCAATGTAAGTATCCAGA--------------------------TGCA----------------------------------------TTTG-----------------------------------------------CTGCAACCCACCCACTTACAGCACCAGC-----AATGTTCAACATAGTAAAATAAGTACCAACTGCCT--------TAGGCCCCAC---AGTCATTATCGAGTTGCAAATAAT---TCTTAT--------AAAATTGGAAATT----GGAAAT-------------------------------------------------------------------------------------TGAAATCTTGGTGACGCTGATG----------CAACAAATT------GGCAGGGGAA-TCACAGTCATTTGCAA----------------C---AAATTAATTCTTGAACTAATCGAAT------G-----------------------AAATATTCC-----TCTT----GTAT-TTTGCAGTAATAAA-GGCGCATTGAAAA---GCTGAAATTCAGTGAATAACTACAAA---C----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACGGCAATGGAGTATAAAATACACTGTGATAGCCTTAAATATGTTTCAATGTAAGTACAA--------------------CAAACTAGTTTAACTTA-AGCTAGAGCAGCAAAAAAGAAAAAAAACAAACAAAATTG------------T--CA-AGACCTACCTAACTATCTTAATGGT-T--AATCA-------------------------------------------------------CCTTGTACCTTGCACCCAGGCCGCGGTTCTATCGTAACCGAAGATTGGGTCACTATCTAATTCGAAGTAGATATTCATTGAATACCAATAAATAATCAGAATAT---------C--------AAGAATCTCTCTAGGTGGACAAAA------------------------------------ATATCTGTTAA----ACT---------------------------CA---------------CTTTCGCACATCTTTAGA--AATATACTTATACGAAT----ATGTATTTTT--GTTAATTCAATTTTAATATCTCTTATTTATTTATACTGT-----TTTCTTATTTCG-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTTTAAACAACAGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................TTGTACCTTGCACCCAGGCCG............................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAA----ACT---------------------------CA---------------CTTTCGCACA.....................................................................................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGAAAA---GCTGAAATTCAG......................2111.00100001
.........................................................................................................................................................................................ATCA-------------------------------------------------------CCTTGTACCTTGCACCC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTATTTCG-TTTGCAG..........................................................1811.00100010
dp5
ACTACAATGGAGTATAAGATACACTGTGATAGCCTTAAATATGTTTCAAAGTAAGTAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT-GT---ATGTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-----TTTC----TTAT-ATTGCAGTAATAAA-GGCACATTGAAAA---GCTGAAATTCAATGAATAACTATAAACCACAAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTTATTTTC----GTATTTTTTCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGCCAATAACTATAAA---CAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAATT----ATA-----------------------AAATGTTAC-----TATC----TTAT-TTTTCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGCCAATAACTATAAA---CAAAASizeHit CountTotal NormTotal
No Reads
droKik1
ATCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------TAATATTCTTCTTTTTTC----TTAT-TTTCCAGTAATAAA-GGCCCCTTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAASizeHit CountTotal NormTotal
No Reads
droFic1
GGTGA--TG----------------------GTCC-------------------------------------------------------------------------------------------------------------------------------------------------------GAAACCGACCCCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATTGGCAG---CTTA-ATA------------------------------------------------------TGTCA------TAGC----GTAT-TTT-TG---ATGGA-AA-ATATGAAAAAGTAAACAAGATTCAGTAAAGAAAAGT-AA---CAGAASizeHit CountTotal NormTotal
No Reads
droEle1
GTCCAATTTCTGTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTTTCGGCCAGCTAAAAGT--TAT-----------------------TTATCCTCT-----TTCG----CTTT-CTTGCCCAAATAAA-A---CCTGCAGGC---GCAGCAGTTTGTTGTTTAACTACA-G---CAACASizeHit CountTotal NormTotal
No Reads
droRho1
AAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT-----TTTT----TTAC-TATGTACATATAAACGAAACGAAAAAAA---GACGACATTAGAAGGAAGGAAGATCG---CAGAASizeHit CountTotal NormTotal
No Reads
droBia1
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATCGAAA----AAC-----------------------CGATATTCT-----TTTC----TTAT-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAACTCAGCGAATAACTATAAA---CAAAASizeHit CountTotal NormTotal
No Reads
droTak1
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATTCT-----TCTC----TTAT-TTTACAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAASizeHit CountTotal NormTotal
No Reads
droEug1
GACCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAATTAGAA----AAT-----------------------CATATTT---------------TTTC-TTTTCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAASizeHit CountTotal NormTotal
No Reads
dm3
ACGGCATTGGAGTATAAGATACACTGTGATAGCCTTAAATATGTTTCAATGTAAGTAAGCGGAAAGTAATATTTTAACTGCCAACTAGACAAGCTTGTAGCTATTAGA--------------------------------------------GA-ATATTTGCATAACTATC---------------------------------------------GTTAACTAATCTGGTAATTCGAATACCACCTGTACCAT--ACGCAGGCCGAGA---CGTCAAAATCATAAGCTGGGAAACCTTTTTTATCGAAATCGATACGGCTTTAATTC-------------------AAGATACGGAAAATCATGAT------------------------------ACAAA--AACCCAACTCG-ATTATCAAGATATTAGTGAAGTGAATTAACTTTTAATTAATGATTT------GGGATGGGAA-A--CCAGCAGTGGCCA----------------TGCTCATAAGATCTT----CGAACTAAAT----ATC-----------------------CAATATTCTTCTTCTTCC-TTTTTTT-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTAATGATTT------GGGATGGG..........................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................ATTC-------------------AAGATACGGAAAATCAT..........................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000
..............................AGCCTTAAATATGTTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGATTT------GGGATGGGAA-A--C...................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGGAA-A--CCAGCAGTGGCC........................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................TACACTGTGATAGCCTTAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGATTT------GGGATGGGAA-A--CCAGC...............................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................................................................................................................CATAAGCTGGGAAACCTTTTT........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TGAT------------------------------ACAAA--AACCCAACTCG-A.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAATGATTT------GGGATGG...........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAA-GGCCCATTGAAAA---GC................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGAA-A--CCAGCAGTGGCCA----------------T......................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTT------GGGATGGGAA-A--C...................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................ATCGAAATCGATACGGCTTTAATTC-------------------A..........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GTCAAAATCATAAGCTGGGAAACCT............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CTGTACCAT--ACGCAGGCCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
..........................................GTTTCAATGTAAGTAAGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................TACACTGTGATAGCCTTAAATATGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTGGAGTATAAGATACAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGAAGTGAATTAACTTT.....................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAATGATTT------GGGATGGGA.........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATACACTGTGATAGCCTTAAATATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................AACCTTTTTTATCGAAATCGA............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................................................................................................................................................................................TCGATACGGCTTTAATTC-------------------AAGATACGGA.................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACGGCATTGGAGTATAAGATACACTGTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AGTATAAGATACACTGTGATAGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CCAACTAGACAAGCTTGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTAATGATTT------GGGATGGGAA-A--CCA.................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................................................................................................................................................................................ACCAT--ACGCAGGCCGAGC---A.....................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TTTGCAGTAATAAA-GAG...............................................1970.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droSim2
TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC------TTCC----TTTA-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCTTCTTCC----TTTA-TTTACAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACGGCAATGGAGTATAAGATACACTGTGATAGCCTTAAATATGTTTCAATGTAAGTATGCTTAAGGTTTTACTCACTCTGCCGCCTAGATATACTTGTAGCTGTCAGA--------------------------------------------AATATCTTGTCAT-----------------TT--------------------------GTAATTCGCAAACTAATCTGGTAATTCGAATACCACCTGTACCAT--ACGCAGACCGAGA---CGTCGAAATCGTAAGCTGGGAAACCTCTTTAATAGAAATAAATACGGCTTCAATGC-------------------AAGATATGGCAGATCGTGAT------------------------------G--AA--AACT---CTCG-ATGATCAAGATATTCGTGAATTTAATAAACT------TAATGGTTT------GGGAAGGGAAATTACCAGCACTGGTTA----------------T---CATACAATTAT----CTAATTAAAG----AAC-----------------------CAATTTTCT-----TCTT----TTAT-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGTAATAAA-GGCCCAT...........................................2111.00101000000000
...............................GCCTTAAATATGTTTCAAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAATTACCAGCACTGGTTA----------------.......................................................................................................................................................2211.00100100000000
..................................................................................................................................................................................................................................TCTGGTAATTCGAATACCACC................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
....................ACACTGTGATAGCCTTAAATATGTTTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
droEre2
ACGGCAATGGAGTATAAGATACACTGTGATAGCCTTAAATATGTTTCAATGTGAGTATGCGCAAGGTTTTACTATATCCGCCAACTCGATAAGCTTGTAGCTAGCAGA--------------------------------------------GA-ATCATGTCATAATTAAC---------------------------------------------GTAAACTAATCTGGTAATTCGAATACCACCTGTACCAT--ACGCAGACCGAGA---CGTCGAAATCGTAAGCTGGGAAACCTCTTTAATCGAAATCGATACGGCTTTAATTC-------------------AAGATATGGCAGATCATG------------------------------------------------------ATCAAGATATTCGTGAATTTAATAAGCA------TAATGATTT------GGGAAGGGAA-ACCCCAGCATTGGTCA----------------T---TATTTAATCAT----CTAATTAAAT----TAC-----------------------AAATATTCTTCAA--TTT----TTAT-TTTGCAGTAATAAA-GGCCCATTGAAAA---GCTGAAATTCAGTGAATAACTATAAA---CAAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................GTGATAGCCTTAAATATGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
...........GTATAAGATACACTGTGATAGCCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000

Generated: 05/16/2015 at 08:28 PM