ID:

dvi_254

 Coordinate:

scaffold_12942:72848-72998 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.4 -4.3 -4.2

Flybase annnotation

exon [dvir_GLEANR_3024:8]; CDS [Dvir\GJ18414-cds]; intron [Dvir\GJ18414-in]

Repeatable elements

NameClassFamilyStrand
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGAAAACAAATTACATGTATATACTTATATATATATATATATATATATATATATATATATATATATATATATATATATGTAATTTGTTTATATATATATTCTTAATTAAGAGCAGAATCAAAATATTCCTACAAAAACACAAAACCTAACTTTGATTTATATACATTTGATTATTCTTGTTTACTTTTTCCTGATATATAGCAACAGCATATCAGTCGATTTTCGTGAGGAATACAGACGGGCAATACCCT
**********************************************************************************************************((((((...(((((((((((.....((((...............))))....))))...))))))).))))))...********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060658
140_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060657
140_testes_total
 SRR060660
Argentina_ovaries_total
 GSM1528803
follicle cells		 SRR060688
160_ovaries_total
 M028
head
 SRR060654
160x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 M047
female body
 SRR060672
9x160_females_carcasses_total
..........................................................................................................TAAGAGCAGAATCAAAATATTCCT......................................................................................................................... 24 0 1 363.00 363 309 26 19 1 6 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGACGGGC........ 25 0 1 63.00 63 11 29 22 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTAC....................................................................................................................... 26 0 1 53.00 53 1 29 22 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTACA...................................................................................................................... 27 0 1 51.00 51 0 37 12 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGACGGG......... 24 0 1 43.00 43 3 14 25 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGACGG.......... 23 0 1 31.00 31 3 11 15 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTGAGGAATACAGACGGGCAAT..... 25 0 1 25.00 25 22 2 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTA........................................................................................................................ 25 0 1 22.00 22 1 15 5 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGACGGGCAA...... 27 0 1 20.00 20 0 17 3 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTGAGGAATACAGACGGGCAATACCC. 29 0 1 18.00 18 10 4 3 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTGAGGAATACAGACGGGCAATAC... 27 0 1 17.00 17 1 13 3 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTACAA..................................................................................................................... 28 0 1 17.00 17 1 14 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGACGGGCA....... 26 0 1 15.00 15 0 14 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATT............................................................................................................................ 21 0 1 15.00 15 14 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTCGTGAGGAATACAGACGGGCAAT..... 26 0 1 12.00 12 3 7 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTATATACATTTGATTATTCTTGTTT..................................................................... 26 0 1 11.00 11 0 6 5 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTATATACATTTGATTATTCTTGTT...................................................................... 25 0 1 9.00 9 0 5 4 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTGAGGAATACAGACGGGCAATA.... 26 0 1 8.00 8 0 6 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCC.......................................................................................................................... 23 0 1 8.00 8 0 4 4 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGACG........... 22 0 1 6.00 6 2 3 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTTTTCCTGATATATAGCAACAGCATAT....................................... 28 0 1 5.00 5 0 4 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTG........................................................................................................................ 25 1 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAAT............................................................................................................................... 18 0 1 4.00 4 1 2 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTGAGGAATACAGACGGGC........ 22 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTATATACATTTGATTATTCTTGTTTAC................................................................... 28 0 1 4.00 4 0 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTCGTGAGGAATACAGACGGGCAA...... 25 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTTTTCCTGATATATAGCAACAGCAT......................................... 26 0 1 3.00 3 0 1 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTGAGGAATACAGACGGGCAA...... 24 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTAAGAGCAGAATCAAAATATTCCT......................................................................................................................... 25 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGAC............ 21 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TCAGTCGATTTTCGTGAGGAATACAGA............. 27 0 1 3.00 3 0 0 1 0 0 1 0 0 0 1 0 0 0
...........................................................................................................AAGAGCAGAATCAAAATATTCCT......................................................................................................................... 23 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTATATACATTTGATTATTCTTGTTTA.................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGACGGGCAT...... 27 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ATACATTTGATTATTCTTGTTTACTT................................................................. 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGATATATAGCAACAGCATAT....................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGATATATAGCAACAGCATATCAGTCG................................. 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTCGTGAGGAATACAGACGGGCAATA.... 27 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TATATAGCAACAGCATATCAGTCGATT.............................. 27 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGACGGGTAT...... 27 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAG.............. 19 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTAA....................................................................................................................... 26 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGACGGGCAAT..... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CAAGAGCAGAATCAAAATATTCCT......................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TATCAGTCGATTTTCGTGAGGAATAC................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................TACGAGCAGAATCAAAATATTCCTA........................................................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTGAGGAATACAGCCGGGCAATACCC. 29 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................CGTGAGGAATACAGACGGGTTTT..... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAAGATTCCT......................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATATATAGCAACAGCATATCAG.................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTCGTGAGGTATACAGACGGGCAATT.... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AATTAAGAGCAGAATCAAAATATT............................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AAGAGCAGAATCAAAATATTCCTAC....................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AGCATATCAGTCGATTTTCGTGAGG..................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTATATACATTTGATTATTCATGTTTAC................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTCGTGAGGAATACAGACGGGCCA...... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTT........................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGTCGTGAGGAATACAGACGGGCAA...... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CCTACAAAAACACAAAACCTAACTTT.................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTGAGGAATACAGACGGGCAATACC.. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATGTT............................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTGAGGAATACAGACGGGCAATATCC. 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTGT....................................................................................................................... 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ATACATTTGATTATTCTTGTTTACT.................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTGAGGAATACAGACGGGCAATCC... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AATTAAGAGCAGAATCAAAATAT............................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGTGAGGAATACAGACGGGC........ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTTCCTGATATATAGCAACAGCATAT....................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GATATATAGCAACAGCATATCAGTCG................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TATTCTTGTTTACTTTTTCCTGA......................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTTTCGTGAGGAATACAGACGGGCAAT..... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTTCCTGATATATAGCAACAGCATTAA...................................... 27 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTGAGGGATACAGACGGGC........ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCGGAATCAAAATATTCCT......................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATCCCT......................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTAATTAAGAGCAGAATCAAAATAT............................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTGGTGAGGAATACAGACGGG......... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATGTTCGTGAGGAATACAGACGGG......... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ATTTCGTGAGGAATACAGACGGGC........ 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAGATATTCCT......................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGTGAGGAATACAGACGGGCAATAC... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AAGAGCAGAATCAAAATATTCC.......................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGGATCAAAATATTCCT......................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TATCAGTCGATTTTCGTGAGGAATACA............... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTACTACA...................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATTAAGAGCAGAATCAAAATATTCCTA........................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGTAAGGAATACAGACGGGCAAT..... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TCGTGAGGAATACAGACGGGCAATACCC. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTTCCTGATATATAGCAACAG............................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTAAGAGCAGAATCAAAATATT............................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TCCTGATATATAGCAACAGCATAT....................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GTGAGGAATACAGACGGGCAAT..... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGCGAGGAATACAGACGGGC........ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTATATACATTTGATTATTCTTGTTTACT.................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTTTCGTGAGGAATACAGACGGGC........ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTTCCTGATATATAGCAACAGCATAT....................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTAT....................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TATATAGCAACAGCATATCAGTCGAT............................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTTG....................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AAGAGCAGAATCAAAATATTCCTACAAA.................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AATTTCGTGAGGAATACAGACGGGC........ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGA............. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ATACATTTGATTATTCTTGTTTAT................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGATCAGAATCAAAATATTCCT......................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TACTTTTTCCTGATATATAGCAACAGCA.......................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTACCC..................................................................................................................... 28 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTGATATATAGCAACAGCATAAA...................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTATATACATTTGATTATTCTTGTTTAA................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................ATTTGATTATTCTTGTTTACTTTT............................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATA.............................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GTGAGGAATACAGACGGGCAA...... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAATATTCCTATT...................................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGAGCAGAATCAAAATATTCCT......................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATATATAGCAACAGCATATCAGTCGATT.............................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGATATATAGCAACAGCATAA....................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTATATACATTTGATTATTCTT......................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTCGTGAGGAATACAGACGG.......... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTAAGAGCAGAATCAAAATATTCC.......................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTTTAGTGAGGAATACAGACGGGCA....... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATCAGTCGATTTTCGTGAGGAATACA............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CATTTGATTATTCTTGTTTACTTTTTC............................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GGACTACAGACGGGGAATAGC.. 21 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................TTCCTGATATATAGCAACAGCATAT....................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TATCAGTCGATTTTCGTGAGGAA................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................ATTTCGTGAGGAATACAGACG........... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGCAACAGCATATCAGTCGATTTTCGT......................... 27 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................TCCTGATATATAGCAACAGCATATT...................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAATACAGACGTG......... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATCAGTCGATTTTCGTGAGGAATA................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGCAGAATCAAAAAATTCCT......................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGGCAACAGCATATCAGTCGATT.............................. 25 3 2 1.00 2 0 0 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................TTCGTGAGGAATACAGACGGGCAATT.... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATTTTCGTGAGGAACACAGACGG.......... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTTTCGTGAGGAACACAGACGGGC........ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................ATACATTTGATTATTCTTGTTTA.................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTCGAGAGGAATACAGACGGGCAATAC... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TAAGAGAAGAATCAAAATATTCCT......................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GGACTACAGACGGGGAATAAC.. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................ACATCAGATCAGTCGATT.............................. 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................AGGACTACAGGCGGGGAA...... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................ATACATTTGATTATACTTTT....................................................................... 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCTTTTGTTTAATGTACATATATGAATATATATATATATATATATATATATATATATATATATATATATATATATATACATTAAACAAATATATATATAAGAATTAATTCTCGTCTTAGTTTTATAAGGATGTTTTTGTGTTTTGGATTGAAACTAAATATATGTAAACTAATAAGAACAAATGAAAAAGGACTATATATCGTTGTCGTATAGTCAGCTAAAAGCACTCCTTATGTCTGCCCGTTATGGGA
*********************************************************************((((((...(((((((((((.....((((...............))))....))))...))))))).))))))...********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060658
140_ovaries_total
 SRR060657
140_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060665
9_females_carcasses_total
 V116
male body
........................................................................................................................................................................................................CGTTGTCGTATAGTCAGCTAAAAGCACT....................... 28 0 1 290.00 290 206 78 5 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................TGTCGTATAGTCAGCTAAAAGCACT....................... 25 0 1 193.00 193 118 50 10 14 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGTCGTATAGTCAGCTAAAAGCACT....................... 26 0 1 113.00 113 73 32 4 3 0 0 0 1 0 0 0
...............................................................................................................................................TGGATTGAAACTAAATATATGTAAACT................................................................................. 27 0 1 44.00 44 25 16 3 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GTTGTCGTATAGTCAGCTAAAAGCACT....................... 27 0 1 42.00 42 34 7 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................CGTATAGTCAGCTAAAAGCACTCCT.................... 25 0 1 26.00 26 13 13 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTCGTATAGTCAGCTAAAAGCACTCCT.................... 28 0 1 17.00 17 9 5 0 3 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTCGTATAGTCAGCTAAAAGCACT....................... 24 0 1 12.00 12 8 4 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTGGATTGAAACTAAATATATGTA..................................................................................... 24 0 1 10.00 10 6 3 1 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGATTGAAACTAAATATATGTA..................................................................................... 23 0 1 8.00 8 5 2 0 1 0 0 0 0 0 0 0
..............................................................................................................................................TTGGATTGAAACTAAATATATGTAAACT................................................................................. 28 0 1 7.00 7 6 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CTAATAAGAACAAATGAAAAAGGACT......................................................... 26 0 1 7.00 7 2 0 1 4 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CGTATAGTCAGCTAAAAGCACT....................... 22 0 1 6.00 6 3 1 2 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTGGATTGAAACTAAATATATGTA..................................................................................... 25 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0
..........................................................................................ATATATATAAGAATTAATTCTCGTCT....................................................................................................................................... 26 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCGTATAGTCAGCTAAAAGCACTCCT.................... 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCGTATAGTCAGCTAAAAGCACT....................... 23 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAGAACAAATGAAAAAGGACTATAT..................................................... 25 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CGTATAGTCAGCTAAAAGCACTCCTT................... 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGTCGTATAGTCATCTAAAAGCACT....................... 26 1 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TATAGTCAGCTAAAAGCACTCCT.................... 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTCGTATAGTCAGCTAAAAGCACTCCT.................... 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CGTATAGTCAGCTAAAAGCACTCC..................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTCGTATAGTCAGCTAAAAGCACTCC..................... 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTGGTCGTATAGTCAGCTAAAAGCACT....................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGTCGTATAGTCAGCTAAAAGCA......................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CGTATAGTCAGCTAAAAGCAC........................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTATAGTCAGCTAAAAGCACTCC..................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TGTTTTGGATTGAAACTAAATATATGTA..................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..............................................................................................ATATAAGAATTAATTCTCGTCT....................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................ATATATAAGAATTAATTCTCGTCT....................................................................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TAAGAACAAATGAAAAAGGACTAT....................................................... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTGGATTGAAACTAAATATATGTAAACT................................................................................. 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AATAAGAACAAATGAAAAAGGACTATAT..................................................... 28 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................ACTAAATATATGTAAACT................................................................................. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GGATTGAAACTAAATATATGTAAACT................................................................................. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TATAGTCAGCTAAAAGCACT....................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TATATATCGTTGTCGTATAGTCAGCT................................ 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTTGCCGTATAGTCAGCTAAAAGCACT....................... 28 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AGTTGTCGTATAGTCAGCTAAAAGCACT....................... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTCCTTATGTCTGCCCGTTAT.... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTCGTATAGTCAGCTAAAAGCACC....................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................ATATATGTAAACTAATAAGAACAAAT.................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GTTGTCGTATAGTCAGCTAAAGGCACT....................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CAAAAAAGAACAAATGAAAAAGGACT......................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGTCGTATAGTCAGATAAAAGCACT....................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTTGTCGTATAGTCATCTAAAAGCACT....................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTAGTCAGCTAAAAGCACT....................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTTGTCGTATAGTCAGCTAGAAGCACT....................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTCGTATAGTCAGCTAA.............................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATAGTCAGCTAAAAGCACTCCTTATGT............... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AAAAATAACAAATGAAAAAGGACTATAT..................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................ATATGTAAACTAATAAGAACA....................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................AATATATATAAGAATTAATTCTCGTCT....................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................CTATATATCGTTGTCGTATAGTCAGCTA............................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TATAAGGATGTTTTTGTGTTT............................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATAAGAACAAATGAAAAAGGACTA........................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................TATATATAAGAATTAATTCTCGTCT....................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTATAGTCAGCTAAAAGCACTCCT.................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CTAATACGAACAAATGAAAAAGGACT......................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................ATATATGTAAGAATTAATTCTCGTCT....................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................ATAGTCAGCTAAAAGCACTCCT.................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTAGTCGTATAGTCAGCTAAAAGCACT....................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TAAGAACAAATGAAAAAGGACTATAT..................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTTGTCGTATAGTCAGCTAAAAGCACC....................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTCTTATAGTCAGCTAAAAGCACT....................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGTCTTATAGTCAGCTAAAAGCACT....................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GTTGTCGTATAGTCAACTAAAAGCACT....................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATCGTATAGTCAGCTAAAAGCACT....................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................TATATAAGAATTAATTCTCGTCTTAGT................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TATCGTTGTCGTATAGTCAGC................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................TGGATTGAAACTAAATATATGTAAA................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TAAGAACAAATGAAAAAGGACTATATAT................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GTATAGTCAGCTAAAAGCACT....................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAGAACAAATGAAAGAGGACT......................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTTGTCGTATAGTCAGCTAAAAGCACTC...................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTCGTATAGTCAGCTAAACGCACT....................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTTGTCGTATAGTCAGCTAAAAGCATT....................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAGAACAAATGAAAAAGGACT......................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGATTGAAACTAAATATATGTAAAC.................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................TAATAATTAATTCTCGTCTTAGTTTTAT.............................................................................................................................. 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................CCCTGTCGTATAGTCAGCTAAAAGCACT....................... 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................CTAATTCTCGTCTTAGTTTTATAAGGAT........................................................................................................................ 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATAAGAACAAATGAAAAAGGACT......................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTTGTCGTGTAGTCAGCTAAAAGCACT....................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CTAATAAGAACAAATGAAAAAGGACTAT....................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ACTAATAAGAACAAATGAAAAAGGACT......................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................AACTAATAAGAACAAATGAAAAAGGACT......................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTTGTCGTATAGTCAGCTAAAAGC.......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GATGTTTTTGTGTTTTGGATTGAAACT................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................AAGAACAAATGAAAAAGGACTAT....................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGTTGTCGTATAGTCAGCTAAAAGCACT....................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AATAAGAACAAATGAAAAAGGACTAT....................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTCGTTTAGTCAGCTAAAAGCACT....................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ATGAAAAAGGACTATATATCGTT............................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CGTTTCGTATAGTCAGCTAAAAGCACT....................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CCTATAGTCAGCTAAAAGCACTCCT.................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................GGATTGAAACTAAATATATGTA..................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AGTCAGCTAAAAGCACTCCTCATGTCT............. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................AAGAATTAATTCTCGTCTTAGTTTT................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CTAAGAACAAATGAAAAAGGACTATAT..................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTCGTATAGTCAGCTAAAAGCACTCC..................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTACGTATAGTCAGCTAAAAGCACTCCT.................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCCAGTTTTATAAGGATGTTT.................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................ATGTTTTTGTGTTTTGGATTGAAACT................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATCGTATAGTCAGCTAAAAGCACTCC..................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAACAAATGAAAAAGGACT......................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CGTATAGCCAGCTAAAAGCACTCCT.................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ATTGAAACTAAATATATGTAAACT................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTCGTATAGTCAGCTAAAAGCACTC...................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTCGTATAGTCAGCTAAAAG........................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................ATTTTGGATTGAAACTAAATATATGTA..................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTCGTATAGTCAGCTCAAAGCACTCCT.................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................CGTTGTTGTATAGTCAGCTAAAAGCACT....................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATAAGAACAAATGAAAAAGGACTATAT..................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ATTGAAACTAAATATATGTAAACTAATA............................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTGTCGTATAGTGAGCTAAAAGCACT....................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTAGTTTTATAAGGATGTTTTTGTGTTT............................................................................................................ 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGTCGTATAGTCAGCTAAAGGCACT....................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAATATATGTAAACTAATAAGAACAA...................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TTAGTGCTCGTCTTAGTTTTT............................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................TATATATATATATATATATACATTA........................................................................................................................................................................ 25 0 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................AGAAGTAATTCTAGTCCTAG.................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12942:72816-72992 - dvi_254 ATATATATATATATATATA-T----ATGTAATTTGTTTATATATATAT------------------------------------------------------------------------------------TC-------------------TTAATTAAG---AGCA---------GAA------------TCAAAATATTC--CTACA--------------------------------------------AAAACACAAAACCTAACT---------TTGA-----------------------------------------------------------TTTATA----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTTTA-CTTTTTCCTGATATATA-----------GCAACAGCATATCAGTCGATTTTCGTGAGGAAT
droMoj3 scaffold_6328:4416559-4416731 - ATATATATATATATATATA-T----ACA------------------------------------TATATCT-----------------------------------------------ATAT--ATATG--------TAGTATA-TTTGTGTATTCTTAA----------------GTAAG----------------------CAT--ACA--------------------------------------------CAATCACAAAACCTAACT---------TTGA-----------------------------------------------------------TTTATA----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----AATTTCGTTTTTTTCTAATATATA-----------GCAACAGCATATCAGTCGATTTTCGTGAGGAAT
droGri2 scaffold_14853:816178-816364 - ATATATATGTATATATGTA-T----ATG------------------------------------GTAATAA-----------------------------------------------AAACCTTAAAAT--CA-------------------ATATA-----------TTC----CTAAAGCGCGACCAGCATCAAACTGAAG--CTGCA--------------------------------------------AACTGCAAAAACCTAACT---------TTTA---------------------------------------------------------------T----------T------------------------------------------------------------------------------------TATATATA-TATT------TTAT--------------TA-----TTCT----AATTTA-CTCTTTTCTGAATTATA-----------GCAACAGCATATCAGTCGATTTTCGTGAGGAAT
droWil2 scf2_1100000004521:4369838-4370018 - ATATATGTAGGTATATATG-T----ATATAATATGTTGTAGTACGAAGCGCGCAATAATCTTTATATAAGAG-----------------------------------------------------------------------------------------------------AAAATGGG----------------------TAA--AAA--------------------------------------------AAAG-----AAAAATAAC---------CCAA-----------------------------------------------------------TTTGTATAGTTC---------------------------------------------------------------------------------------------ACA-CTTT------TCAT--------------T--------CTTTATTATTCT-TTAGGCCCTAAAGGTTA-----------GCAAT---GAATGTGTCCATTTCAGAGAGAAAG
dp5 XL_group1a:4243927-4244128 + GTGTATATCTATTAAAATAGTACGTACTCA--ACAAT------------ATGCTCTCCTTTT-------------------------------------------------------------------------------------TGTATG-TGCTGAAAATA----GGGGA-----------------------------C----AT--GAATGAAATTCCCATAGGAACTTTACG------AATCTA------------AAAC------CGTTTTA---------------------------------------------------------------------C----------TTTT------------------------------------------------------------------------------------ATTTC-TATT------TAAT--------------TATTCAACTCT----TATTCA-ATTTTCTCTTAATTTTA-----------GCCACAGCATATCAGTCGATTTTCGTGAGGAAT
droPer2 scaffold_5:2947285-2947427 + AAATA-ATATATATGTATA-T--ATTTAT--TTTGTTTATT----T-----------------------------------------------------------------------------------------------------TCTCTCTTAGTAAAA---ATAA---------AAA------------TCGTTATTTCT--CTTT--------------------------AACAAAATAAATTTTCACAAATTATAAATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATG------TAAT--------------TA-----TTTG----TGTT---TTTTTTTTAAATATCTA-----------ACA-----------------------------A
droAna3 scaffold_12929:1595815-1595998 - dan_802 CCAAAGAAAAAAAAAAAAC-A----AAAGATTCTTTTCATATATATAC-------CCC---------------------------------------------------------------------------------------CTTGTGTATTAATGAAA---AGAA----------------------------------A----------ATGAAGAA-----------TTTAAGAAACTAAATCTAAA------------A-------CGTTTTCA-------------------------------------------------------------------------------TTTA------------------------------------------------------------------------------------ATTTA-TATT------TGAT--------------TA-----CTCT----TATTCA-ATTTTCTCTTAAATTTA-----------GCCACAGCATATCAGTCGATTTTCGTGAGGAAT
droBip1 scf7180000396543:59308-59488 - ATATACCCCTCCATAAAAA-A----ACAGATTCTTTTCATATATATAC------------------------------------------------------------------------------------CC-----------CTTGTGTATTAATGAAA---AGAA---------AAA------------TGAA----------TTT--------------------------AAGAAACTAAATCTAAA------------A-------CGTTTTCA-------------------------------------------------------------------------------TTTA------------------------------------------------------------------------------------ATTTA-TATT------TGAT--------------TA-----CTCT----TATTCA-ATTTTCTCTTAAATTTA-----------GCCACAGCATATCAGTCGATTTTCGTGAGGAAT
droKik1 scf7180000302398:401021-401186 - ATATATACTTGTGTAT------------------------------------------------------------------------------------------------------------------------------------------TAGTGAAAAGA----AAGAAT---------------------------------GC--AAAAAAAAAACCAAAC-------------------------------------------------------------------------------------------------AAAAAAAAAAAAAACACAAATCTATATAATTTTACTTTA------------------------------------------------------------------------------------ATTTAAAATT------TGAT--------------TA-----CTCT----TATTCA-ATTTTCTCTTAAATTTA-----------GCCACAGCATATCAGTCGATTTTCGTGAGGAAT
droFic1 scf7180000453277:51029-51202 + T-ATATATATATATATATA-T--------GGTTTTTTTTTC------------------------------------------------------------------------------------GATAAATTA-------------------ATAAT---TATA----TTA---------------------TTGTAATGTAT--CTACG----------------------------GCACTGAATGAACA------------A-------CTTTGCTGC---------------------------------------------------------------TTTAA----------------------------------------------------------------------------------------------------TTG-TATT------TGTA--------------TT-----GTGT----ATTCCA-TTTACGGCATTTTGATAGTATATATACAACAACAACAAATCAACGTATTTCCGT-------
droEle1 scf7180000491199:1437689-1437864 - ATATATATATATATATATA-T----ATA------------------------------------TATATCTAAAAATGGATTAAAAAAATAGTAATAATTGTTTACTCATTGTCAAAAAATTTATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGCTTAGTTCATAACCT--------------------TTTACA----------------------------------------------------------------------------------------------TAAACAAA-AATT------T------------------------CCTT----CGCTTA-TTTTATTCTTAT---AA-----------GGATCATTCTTTCAGTTTATTTATATG------
droRho1 scf7180000763800:2930-3093 + AAATATATGGATTAAAAAA-T----ATGTGGTATTTTTATA--TTA---------------------------------------------------------------------------T--ACGTA--------TTA----T-----------------------------------A-ATAACATTATATAAAATTA-----TTATA---------------------------------------------------ATAATATAAAT---------TAAATTTATATAAATATTTGTAAATTAGCTTTTTTAATTATTTAGAAAAAAGAGAAACCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTGTGTCGTTTTTCG--------
droBia1 scf7180000300750:1441-1588 + AAATATATATATATAAATA-T----ATATAATATATATATA------------------------------------------------------------------------------------AATATAAAT-------------------ATATA---TATA----TAAATATATA------------T--------A--TAAATATA----------------------------ATAATATATA---------------------------------AATA-----------------------------------------------------------TTTATA----------------------------------------------------------------------------------------------------TA-AATATAAATATGTATAAATA-------------------------------TAT------ATATAAA-----------AAAATA-----------GTATATAAATATAAAT
droTak1 scf7180000415396:337854-338007 + GTATGTATATATTCATGCT-A----ACGCAATTTATATATATATATAC------------------------------------------------------------------------------------CA-----------A-------TTTGCCAAA--------------------AGTATACTCTATAAAATTGATG--ATAAATAAACAAAACT-----------TTCAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCACACACGTATTTACC------------------------------------T---------------------TTTACAAGGAGTTATTTTTTCTTTGTTTACAGC
droEug1 scf7180000408789:15009-15142 - TTATATATTTATATATTTA-T----ATA------------------------------------TTTATAT-----------------------------------------------ATTT--ATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATATTTACATATTTATATATTTATTTTATATATTTATATATTTATATA---TCTATATATTG---------------------------T----TGTTGA-GTTATTCC-------------------------------------CGTTTGAGAGAAAAAG
dm3 chrU:8430070-8430230 + ATATATACATATATACATA-T----ATA------------------------------------CATATAT-----------------------------------------------ACAT--ATATA--------CTG----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACAGTATATACATATATACTGTATATACATATATACATATATACATATATA-----------------------------------------CA-TATATACATAT----ATACATATATACA--TAGA-------------G--ACAT------ATAT--------------------ACATATATACCTATA---TACAGAGAT
droSim2 node_65696:509-692 - ATATATATATCTATATATA-T----ATA------------------------------------TCTATAT-----------------------------------------------ATAC--ATGTATATAT-------------------ATATA---TATA----TACATATCTG------------T--------A--TATATATA----------------------------TACATGTCTA----------------------------------------------------------------------------------------------------T---------------------------------------------------ATATATATA-----------------------------------------TA-TATATACATAT----CTGTATATATATA--TACATGACT----ATATAT-ATATATATATATACATA-----------GTAAAAGTAAAACAAATAAAATCCTTAACAAAT
droSec2 scaffold_108:26644-26782 + ATATACATATTTATATATA-T----ATACCATATACATATT------------------------------------------------------------------------------------TATAT--ATATAGACC---------------------ATA----TACGTATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------TATATATACATATACATATTT-------------------------------ATATA-TATA------TACA--------------TA-----TACA----TATTT--ATATATATATATATATA-----------TCTACAATATA---------------------T
droYak3 v2_chrUn_174:3151-3333 + ATGGATATATATGTATGGA-T----ATG------------------------------------TATTTAT-----------------------------------------------GGGT--ATGTA--------TAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATGTGTATGTAAAATTTTGCTAAA-------------------------------------------------TGTATATATAAATTTATATA---AATGTATATTTGATTTAATTTATTTGAATT-----TGTG---------G-TTTGTATTTTATATTGA---GGCAAAAAACAGCAGTTTAGCAGCGGACGATAATAGTGAAT
droEre2 scaffold_4512:192436-192599 + ATATTTATATAAGTATACA-T--ATCTATA--ACAGT------------GTAT-----------------------------------------------------------------------------------------------------TATTCTCCTGA----TACAATTCTGGG----------------------TCA--ACA--------------------------------------------CAGATTCAAAAATATACA---------CCAG-----------------------------------------------------------TTTATA----------------------------------------------------------------------------------------------------TA-TATT------TGAT--------------CT-----ATAT----AT-GGT-CTGTTACTGTGTATATA-----------CCAACAAATATTAAATACTTTTTTGCGCGTAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATATATATATATATATATA-T----ATGTAATTTGTTTATATATATAT------------------------------------------------------------------------------------TC-------------------TTAATTAAG---AGCA---------GAA------------TCAAAATATTC--CTACA--------------------------------------------AAAACACAAAACCTAACT---------TTGA-----------------------------------------------------------TTTATA----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTTTA-CTTTTTCCTGATATATA-----------GCAACAGCATATCAGTCGATTTTCGTGAGGAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CT.....................................................................................................................................................................................................................................................................................................................................................................241363.003630000000630902000000000000001900010000260000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTAC...................................................................................................................................................................................................................................................................................................................................................................26153.005300000000100000000000000002200010000290000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTACA--------------------------------------------......................................................................................................................................................................................................................................................................................................................27151.005100000000000000000000000001200020000370000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTA....................................................................................................................................................................................................................................................................................................................................................................25122.00220000000010000000000000000500010000150000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTACA--------------------------------------------A.....................................................................................................................................................................................................................................................................................................................28117.00170000000010000000000000000200000000140000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATT..........................................................................................................................................................................................................................................................................................................................................................................21115.00150000000014000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TTATA----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTTT...............................................................26111.0011000000000000000000000000050000000060000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TTATA----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTT................................................................2519.009000000000000000000000000040000000050000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--C......................................................................................................................................................................................................................................................................................................................................................................2318.008000000000000000000000000040000000040000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTG....................................................................................................................................................................................................................................................................................................................................................................2515.005000000004000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCCTGATATATA-----------GCAACAGCATAT.....................2815.005000000000000000000000000010000000040000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAAT.............................................................................................................................................................................................................................................................................................................................................................................1814.004000000001000000000000000010000000020000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TTATA----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTTTA-C............................................................2814.004000000000000000000000000020000000020000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCCTGATATATA-----------GCAACAGCAT.......................2613.003000000000000000000000000010001000010000000000000000000000000000
.............................................................................................................................................................TTAAG---AGCA---------GAA------------TCAAAATATTC--CT.....................................................................................................................................................................................................................................................................................................................................................................2513.003000000002000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................AAG---AGCA---------GAA------------TCAAAATATTC--CT.....................................................................................................................................................................................................................................................................................................................................................................2313.003000000002000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATA-----------GCAACAGCATATCAGTCGATT............2712.002000000000000000000000000000001000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TTATA----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTTTA-.............................................................2712.002000000000000000000000000020000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTTTA-CTT..........................................................2612.002000000000000000000000000010000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATATA-----------GCAACAGCATAT.....................2112.002000000000000000000000000010000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATATA-----------GCAACAGCATATCAGTCG...............2712.002000000000000000000000000010000000010000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTAA...................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000000000020000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TTATA----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTTTA-CT...........................................................2911.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCCTGATATATA-----------GCAACAGCATAT.....................2711.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTAT...................................................................................................................................................................................................................................................................................................................................................................2611.001000000001000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATA-----------GCAACAGCATATCAG..................2211.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................AATTAAG---AGCA---------GAA------------TCAAAATATT..........................................................................................................................................................................................................................................................................................................................................................................2411.001000000001000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATA-----------GCAACAGCATATCAGTCGAT.............2611.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................AAG---AGCA---------GAA------------TCAAAATATTC--CTAC...................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATATCAGTCGATTTTCGTGAGG...2511.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTTG...................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................AAG---AGCA---------GAA------------TCAAAATATTC--CTACA--------------------------------------------AA....................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTT....................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................C--CTACA--------------------------------------------AAAACACAAAACCTAACT---------TT.........................................................................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTTTA-T............................................................2411.001000000000000000000000000010000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-CTTTTTCCTGATATATA-----------GCAACAGCA........................2811.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTACC--------------------------------------------C.....................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTGT...................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATATATA-----------GCAACAGCATAAA....................2311.001000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTTTA-CT...........................................................2511.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TTATA----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTTTA-A............................................................2811.001000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT------TGAT--------------TA-----TTCT----TGTTTA-CTTTT........................................................2411.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................AATTAAG---AGCA---------GAA------------TCAAAATAT...........................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTGATATATA-----------GCAACAGCATAT.....................2611.001000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATA............................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................TAAG---AGCA---------GAA------------TCAAAATATTC--CTATT--------------------------------------------......................................................................................................................................................................................................................................................................................................................2711.001000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AG---AGCA---------GAA------------TCAAAATATTC--CT.....................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATA-----------GCAACAGCATATCAGTCGATT............2811.001000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATATA-----------GCAACAGCATAA.....................2111.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TTATA----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----T...................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................TTAAG---AGCA---------GAA------------TCAAAATATTC--C......................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATATA-----------GCAACAGCATATCAGTCG...............2611.001000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----TTCT----TGTTTA-CTTTTTCCTGA..................................................2311.001000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTGATATATA-----------GCAACAGCATTAA....................2711.001000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATT------TGAT--------------TA-----TTCT----TGTTTA-CTTTTTC......................................................2711.001000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGATATATA-----------GCAACAGCATAT.....................2511.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................TTAATTAAG---AGCA---------GAA------------TCAAAATAT...........................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGTCGATTTTCGTGAGGAA.2311.001000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGATATATA-----------GCAACAGCATATT....................2511.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................AAG---AGCA---------GAA------------TCAAAATATTC--C......................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................ATTAAG---AGCA---------GAA------------TCAAAATATTC--CTA....................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTGATATATA-----------GCAACAG..........................2111.001000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................TTAAG---AGCA---------GAA------------TCAAAATATT..........................................................................................................................................................................................................................................................................................................................................................................2211.001000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----TGTTTA-.............................................................2311.001000000000000000000000000010000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGATATATA-----------GCAACAGCATAT.....................2411.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
ATATATATATATATATATA-T----ACA------------------------------------TATATCT-----------------------------------------------ATAT--ATATG--------TAGTATA-TTTGTGTATTCTTAA----------------GTAAG----------------------CAT--ACA--------------------------------------------CAATCACAAAACCTAACT---------TTGA-----------------------------------------------------------TTTATA----------------------------------------------------------------------------------------------------TA-CATT------TGAT--------------TA-----TTCT----AATTTCGTTTTTTTCTAATATATA-----------GCAACAGCATATCAGTCGATTTTCGTGAGGAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATATATATGTATATATGTA-T----ATG------------------------------------GTAATAA-----------------------------------------------AAACCTTAAAAT--CA-------------------ATATA-----------TTC----CTAAAGCGCGACCAGCATCAAACTGAAG--CTGCA--------------------------------------------AACTGCAAAAACCTAACT---------TTTA---------------------------------------------------------------T----------T------------------------------------------------------------------------------------TATATATA-TATT------TTAT--------------TA-----TTCT----AATTTA-CTCTTTTCTGAATTATA-----------GCAACAGCATATCAGTCGATTTTCGTGAGGAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATATATGTAGGTATATATG-T----ATATAATATGTTGTAGTACGAAGCGCGCAATAATCTTTATATAAGAG-----------------------------------------------------------------------------------------------------AAAATGGG----------------------TAA--AAA--------------------------------------------AAAG-----AAAAATAAC---------CCAA-----------------------------------------------------------TTTGTATAGTTC---------------------------------------------------------------------------------------------ACA-CTTT------TCAT--------------T--------CTTTATTATTCT-TTAGGCCCTAAAGGTTA-----------GCAAT---GAATGTGTCCATTTCAGAGAGAAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................CTTTATATAAGAG-----------------------------------------------------------------------------------------------------AAAATGGG----------------------T.........................................................................................................................................................................................................................................................................................................................................................................2213.00300210
...............................................................ATATAAGAG-----------------------------------------------------------------------------------------------------AAAATGGG----------------------T.........................................................................................................................................................................................................................................................................................................................................................................1812.00200020
...........................................................................................................................................................................................................................................................................................................................................................TGTATAGTTC---------------------------------------------------------------------------------------------ACA-CTTT------TCAT--------------T--------CTT.......................................................................2512.00202000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCATTTCAGAGAGAAA.2012.00200020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGTTA-----------GCAAT---GAATGTGTCCATT............2712.00201010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTCCATTTCAGAGAGAAA.2212.00200020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTCCATTTCAGAGAGA...2012.00200011
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTCCATTTCAGAGAG....1911.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---GAATGTGTCCATTTCAGAGAG....2311.00101000
.............................................................................................................................................................................................................................................................................TAAC---------CCAA-----------------------------------------------------------TTTGTATAGTTC---------------------------------------------------------------------------------------------ACA-A..............................................................................................................2411.00101000
............................TAATATGTTGTAGTACGAAGCGCGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAT--------------T--------CTTTATTATTCT-TTAGGCCC.....................................................2511.00101000
............................TAATATGTTGTAGTACGAAGCGCGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
............................................................................................................................................................................................................................................................................................................................................................GTATAGTTC---------------------------------------------------------------------------------------------ACA-CTTT------TCAT--------------T--------CTTTAT....................................................................2711.00101000
.................................................................................................................................................................................TGGG----------------------TAA--AAA--------------------------------------------AAAG-----AAAAATAAC---------CCAA-----------------------------------------------------------T...........................................................................................................................................................................................................................2811.00101000
..................................GTTGTAGTACGAAGCGCGCAATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCATTTCAGAGAGAA..1911.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA-----------GCAAT---GAATGTGTCCATT............2111.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------TCAT--------------T--------CTTTATTATTCT-TTAGGCCC.....................................................2611.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGTTA-----------GCAAT---GAATGTG..................2111.00100100
...........................................................................................................................................................................................................TAA--AAA--------------------------------------------AAAG-----AAAAATAAC---------CCAA-----------------------------------------------------------TTTG........................................................................................................................................................................................................................2711.00101000
.....................................GTAGTACGAAGCGCGCAATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
...........................ATAATATGTTGTAGTACGAAGCGCGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.........................................................ATCTTTATATAAGAG-----------------------------------------------------------------------------------------------------AAAATGGG----------------------T.........................................................................................................................................................................................................................................................................................................................................................................2411.00100010
......................................TAGTACGAAGCGCGCAATAATCTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAAAGGTTA-----------GCAAT---GAATG....................2111.00101000
........................................GTACGAAGCGCGCAATAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTCT-TTAGGCCCTAAAGGT..............................................2211.00100001
.............................................................TTATATAAGAG-----------------------------------------------------------------------------------------------------AAAATGGG----------------------T.........................................................................................................................................................................................................................................................................................................................................................................2011.00100100
....................................TGTAGTACGAAGCGCGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..............................................................TATATAAGAG-----------------------------------------------------------------------------------------------------AAAATGGG----------------------T.........................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGTCCATTTCAGAGAGAAA.2311.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGTCCATTTCAGAGA.....1911.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGTTA-----------GCAAT---GAATGTGTCCAT.............2611.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTA-----------GCAAT---GAATGTGTC................1811.00100010
...........................................................................................................................................................................................................................................................................................................................................................TGTATAGTTC---------------------------------------------------------------------------------------------ACA-CTTT------TCAT--------------T--------CTTTAT....................................................................2811.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGCCCTAAAGGTTA-----------GCAAT---GAATGT...................2811.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTATTATTCT-TTAGGCCCTAAA.................................................2411.00101000
.......................................................TAATCTTTATATAAGAG-----------------------------------------------------------------------------------------------------AAAATGGG----------------------T.........................................................................................................................................................................................................................................................................................................................................................................2611.00100010
..................................GTTGTAGTACGAAGCGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
............................................................TTTATATAAGAG-----------------------------------------------------------------------------------------------------AAAATGGG----------------------T.........................................................................................................................................................................................................................................................................................................................................................................2111.00100010
....................................TGTAGTACGAAGCGCGCAATAATCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAAAGGTTA-----------GCAAT---GAATGT...................2211.00100100
dp5
GTGTATATCTATTAAAATAGTACGTACTCA--ACAAT------------ATGCTCTCCTTTT-------------------------------------------------------------------------------------TGTATG-TGCTGAAAATA----GGGGA-----------------------------C----AT--GAATGAAATTCCCATAGGAACTTTACG------AATCTA------------AAAC------CGTTTTA---------------------------------------------------------------------C----------TTTT------------------------------------------------------------------------------------ATTTC-TATT------TAAT--------------TATTCAACTCT----TATTCA-ATTTTCTCTTAATTTTA-----------GCCACAGCATATCAGTCGATTTTCGTGAGGAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................GA-----------------------------C----AT--GAATGAAATTCCCATAG................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
droPer2
AAATA-ATATATATGTATA-T--ATTTAT--TTTGTTTATT----T-----------------------------------------------------------------------------------------------------TCTCTCTTAGTAAAA---ATAA---------AAA------------TCGTTATTTCT--CTTT--------------------------AACAAAATAAATTTTCACAAATTATAAATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATG------TAAT--------------TA-----TTTG----TGTT---TTTTTTTTAAATATCTA-----------ACA-----------------------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CCAAAGAAAAAAAAAAAAC-A----AAAGATTCTTTTCATATATATAC-------CCC---------------------------------------------------------------------------------------CTTGTGTATTAATGAAA---AGAA----------------------------------A----------ATGAAGAA-----------TTTAAGAAACTAAATCTAAA------------A-------CGTTTTCA-------------------------------------------------------------------------------TTTA------------------------------------------------------------------------------------ATTTA-TATT------TGAT--------------TA-----CTCT----TATTCA-ATTTTCTCTTAAATTTA-----------GCCACAGCATATCAGTCGATTTTCGTGAGGAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...AAGAAAAAAAAAAAAC-A----AAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.081010000
droBip1
ATATACCCCTCCATAAAAA-A----ACAGATTCTTTTCATATATATAC------------------------------------------------------------------------------------CC-----------CTTGTGTATTAATGAAA---AGAA---------AAA------------TGAA----------TTT--------------------------AAGAAACTAAATCTAAA------------A-------CGTTTTCA-------------------------------------------------------------------------------TTTA------------------------------------------------------------------------------------ATTTA-TATT------TGAT--------------TA-----CTCT----TATTCA-ATTTTCTCTTAAATTTA-----------GCCACAGCATATCAGTCGATTTTCGTGAGGAATSizeHit CountTotal NormTotal
No Reads
droKik1
ATATATACTTGTGTAT------------------------------------------------------------------------------------------------------------------------------------------TAGTGAAAAGA----AAGAAT---------------------------------GC--AAAAAAAAAACCAAAC-------------------------------------------------------------------------------------------------AAAAAAAAAAAAAACACAAATCTATATAATTTTACTTTA------------------------------------------------------------------------------------ATTTAAAATT------TGAT--------------TA-----CTCT----TATTCA-ATTTTCTCTTAAATTTA-----------GCCACAGCATATCAGTCGATTTTCGTGAGGAATSizeHit CountTotal NormTotal
No Reads
droFic1
T-ATATATATATATATATA-T--------GGTTTTTTTTTC------------------------------------------------------------------------------------GATAAATTA-------------------ATAAT---TATA----TTA---------------------TTGTAATGTAT--CTACG----------------------------GCACTGAATGAACA------------A-------CTTTGCTGC---------------------------------------------------------------TTTAA----------------------------------------------------------------------------------------------------TTG-TATT------TGTA--------------TT-----GTGT----ATTCCA-TTTACGGCATTTTGATAGTATATATACAACAACAACAAATCAACGTATTTCCGT-------SizeHit CountTotal NormTotal
No Reads
droEle1
ATATATATATATATATATA-T----ATA------------------------------------TATATCTAAAAATGGATTAAAAAAATAGTAATAATTGTTTACTCATTGTCAAAAAATTTATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCGCTTAGTTCATAACCT--------------------TTTACA----------------------------------------------------------------------------------------------TAAACAAA-AATT------T------------------------CCTT----CGCTTA-TTTTATTCTTAT---AA-----------GGATCATTCTTTCAGTTTATTTATATG------SizeHit CountTotal NormTotal
No Reads
droRho1
AAATATATGGATTAAAAAA-T----ATGTGGTATTTTTATA--TTA---------------------------------------------------------------------------T--ACGTA--------TTA----T-----------------------------------A-ATAACATTATATAAAATTA-----TTATA---------------------------------------------------ATAATATAAAT---------TAAATTTATATAAATATTTGTAAATTAGCTTTTTTAATTATTTAGAAAAAAGAGAAACCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTGTGTCGTTTTTCG--------SizeHit CountTotal NormTotal
No Reads
droBia1
AAATATATATATATAAATA-T----ATATAATATATATATA------------------------------------------------------------------------------------AATATAAAT-------------------ATATA---TATA----TAAATATATA------------T--------A--TAAATATA----------------------------ATAATATATA---------------------------------AATA-----------------------------------------------------------TTTATA----------------------------------------------------------------------------------------------------TA-AATATAAATATGTATAAATA-------------------------------TAT------ATATAAA-----------AAAATA-----------GTATATAAATATAAATSizeHit CountTotal NormTotal
No Reads
droTak1
GTATGTATATATTCATGCT-A----ACGCAATTTATATATATATATAC------------------------------------------------------------------------------------CA-----------A-------TTTGCCAAA--------------------AGTATACTCTATAAAATTGATG--ATAAATAAACAAAACT-----------TTCAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCACACACGTATTTACC------------------------------------T---------------------TTTACAAGGAGTTATTTTTTCTTTGTTTACAGCSizeHit CountTotal NormTotal
No Reads
droEug1
TTATATATTTATATATTTA-T----ATA------------------------------------TTTATAT-----------------------------------------------ATTT--ATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATATATTTACATATTTATATATTTATTTTATATATTTATATATTTATATA---TCTATATATTG---------------------------T----TGTTGA-GTTATTCC-------------------------------------CGTTTGAGAGAAAAAGSizeHit CountTotal NormTotal
No Reads
dm3
ATATATACATATATACATA-T----ATA------------------------------------CATATAT-----------------------------------------------ACAT--ATATA--------CTG----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATACAGTATATACATATATACTGTATATACATATATACATATATACATATATA-----------------------------------------CA-TATATACATAT----ATACATATATACA--TAGA-------------G--ACAT------ATAT--------------------ACATATATACCTATA---TACAGAGATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................CATATATACTGTATATACATA...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATATATATATCTATATATA-T----ATA------------------------------------TCTATAT-----------------------------------------------ATAC--ATGTATATAT-------------------ATATA---TATA----TACATATCTG------------T--------A--TATATATA----------------------------TACATGTCTA----------------------------------------------------------------------------------------------------T---------------------------------------------------ATATATATA-----------------------------------------TA-TATATACATAT----CTGTATATATATA--TACATGACT----ATATAT-ATATATATATATACATA-----------GTAAAAGTAAAACAAATAAAATCCTTAACAAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................TACATGTCTA----------------------------------------------------------------------------------------------------T---------------------------------------------------ATATATATA-----------------------------------------TA-TA.............................................................................................................2412.00200000010100000000
.............................................................................................................................................................................TATCTG------------T--------A--TATATATA----------------------------TACATGTCTA----------------------------------------------------------------------------------------------------T---------------------------------------------------A...................................................................................................................................................................2811.00100000000010000000
...............................................................................................................................................................................................................................................TACATGTCTA----------------------------------------------------------------------------------------------------T---------------------------------------------------ATATATATA-----------------------------------------TA-TATA...........................................................................................................2611.00100000000010000000
...................................................................................................................................................................................................................................................TGTCTA----------------------------------------------------------------------------------------------------T---------------------------------------------------ATATATATA-----------------------------------------TA-TATATA.........................................................................................................2430.33100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAACAAATAAAA............1660.17100000001000000000
droSec2
ATATACATATTTATATATA-T----ATACCATATACATATT------------------------------------------------------------------------------------TATAT--ATATAGACC---------------------ATA----TACGTATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---------------------------------------------TATATATACATATACATATTT-------------------------------ATATA-TATA------TACA--------------TA-----TACA----TATTT--ATATATATATATATATA-----------TCTACAATATA---------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATGGATATATATGTATGGA-T----ATG------------------------------------TATTTAT-----------------------------------------------GGGT--ATGTA--------TAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATGTGTATGTAAAATTTTGCTAAA-------------------------------------------------TGTATATATAAATTTATATA---AATGTATATTTGATTTAATTTATTTGAATT-----TGTG---------G-TTTGTATTTTATATTGA---GGCAAAAAACAGCAGTTTAGCAGCGGACGATAATAGTGAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................TGTA--------TAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATGTGTATGTAAAATT...............................................................................................................................................................................................27200.7014014000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGA---GGCAAAAAACAGCAGTTTAGC....................27140.57801700000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---GGCAAAAAACAGCAGTTTAGCAGC.................27140.43601500000000
.............................................................................................................................TGTA--------TAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATGTGTATGTAAAAT................................................................................................................................................................................................26200.35707000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---GGCAAAAAACAGCAGTTTAGC....................24150.13200200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG---------G-TTTGTATTTTATATTGA---GGCA.....................................26200.10202000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAAAAACAGCAGTTTAGCAGCGGAC.............28120.08101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA---GGCAAAAAACAGCAGTTTAGCAGC.................28140.07100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGA---GGCAAAAAACAGCAGTTT.......................24140.07100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGA---GGCAAAAAACAGCAGTTTAGCA...................28140.07101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA---GGCAAAAAACAGCAGTTTAGC....................25150.07100010000000
.......TATATGTATGGA-T----ATG------------------------------------TATTTAT-----------------------------------------------GGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
..............................................................................................................................GTA--------TAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATGTGTATGTAAAATT...............................................................................................................................................................................................26200.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TGTG---------G-TTTGTATTTTATATTGA---GG.......................................25200.05101000000000
..............................................................................................................................GTA--------TAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATGTGTATGTAAAATTT..............................................................................................................................................................................................27200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATT-----TGTG---------G-TTTGTATTTTATATT..............................................27200.05101000000000
......................................................................T-----------------------------------------------GGGT--ATGTA--------TAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATGTGTATG......................................................................................................................................................................................................26200.05101000000000
......................................................................T-----------------------------------------------GGGT--ATGTA--------TAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATGTGTATGTA....................................................................................................................................................................................................28200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAGCAGTTTAGCAGCGGACGAT..........27200.05101000000000
....................................................................TAT-----------------------------------------------GGGT--ATGTA--------TAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATGTGTATG......................................................................................................................................................................................................28200.05101000000000
.........................................................................................................................T--ATGTA--------TAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATGTGTATGTAAAAT................................................................................................................................................................................................28200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAGCAGTTTAGCAGCGGACGA...........27200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATT-----TGTG---------G-TTTGTATTTTATATT..............................................26200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTATTTGAATT-----TGTG---------G-TTTG.........................................................24200.05101000000000
..............................................................................................................................GTA--------TAA----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATGTGTATGTAAAAT................................................................................................................................................................................................25200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAACAGCAGTTTAGC....................18200.05100100000000
droEre2
ATATTTATATAAGTATACA-T--ATCTATA--ACAGT------------GTAT-----------------------------------------------------------------------------------------------------TATTCTCCTGA----TACAATTCTGGG----------------------TCA--ACA--------------------------------------------CAGATTCAAAAATATACA---------CCAG-----------------------------------------------------------TTTATA----------------------------------------------------------------------------------------------------TA-TATT------TGAT--------------CT-----ATAT----AT-GGT-CTGTTACTGTGTATATA-----------CCAACAAATATTAAATACTTTTTTGCGCGTAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 08:28 PM