ID:

dvi_2507

 Coordinate:

scaffold_12822:1478163-1478313 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.7 -24.6 -24.3 -24.2

Flybase annnotation

CDS [Dvir\GJ14469-cds]; exon [dvir_GLEANR_14417:4]; intron [Dvir\GJ14469-in]

Repeatable elements

NameClassFamilyStrand
(TCG)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTCATCGTCGTCATCATCATCAATGGAAGCGTCCACGTTGTCGTCAACACCGCCGCCGACAACATCTTTGCCAGCCGCCGCACTGTGCGATTCGGCGACAGTGGCCGCCGTGGCGGCATCTCAATTTTTGACAACGATTGCAACAGCCATGGCTTCGGTGACGGCAGCAGCTGCTACTGGCACGCCCTAATTTAACGACAGTTGCTGTGTCCAGTGAGGACAGCAGCGAGCCGCAGCCGCAGACACAACCA
****************************************************************.....((..((((((.((((((((......)).))))))........))))))......................))************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 GSM1528803
follicle cells		 M061
embryo
 SRR060682
9x140_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V116
male body		 SRR060668
160x9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 M027
male body		 SRR060658
140_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060670
9_testes_total
 SRR060673
9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 V053
head
 M028
head
.......................................................................................................................CTCAATTTTTGACAACGATTGC.............................................................................................................. 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TCTTTGCCAGCCGCCGCACTG...................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................GTGCGATTCGGCGACAGTGGCCGC............................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GCACTGTGCGATTCGGCGACAGT..................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CAGCGAGCCGCAGCCGCAGA........ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TGGCTTCGGTGACGGCAGCC.................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCAGTGAGGACAGCAGCGA...................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................GACAGCAGCGAGCCGCAGCCGCAGA........ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AATTTTTGACAACGATTG............................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GTTGCTGTGTCCAGTGAGG................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ACAGTTGCTGTGTCCAGTGAGGAC.............................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATCTCAATTTTTGACAACGAT................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CATCTTTGCCAGCCGCCGCAC........................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CCAGTGAGGACAGCAGCGAGC.................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CGTCAACACCGCCGCCGAC............................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCCAGTGAGGACAGCAGCGAGCCGCAGC.............. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................AACATCTTTGCCAGCCGCCGCACTGTGC................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CAACGATTGCAACAGCCATGGCTTCG.............................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CGACAACATCTTTGCCAGC................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CTAATTTAACGACAGTTGCTGTGTC........................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AATGGAAGCGTCCACGTTGTCGT............................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............CATCATCAATGGAAGCGTCCACGT..................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGTTGCTGTGTCCAGTGAGGA............................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................CTGTGCGATTCGGCGACA....................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTTTGACAACGATTGCAACAGC........................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTTCGCCAACACCCCCGCCGA................................................................................................................................................................................................ 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................AGCCATGGCTTCGGTGACGGC...................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TGACAACGATTGCAACAGCCAT..................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AATTTAACGACAGTTGCT............................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................GCAGCGAGCCGCAGCCGCAG......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CGCCGCACTGTGCGATTCGGCGACAGT..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GACAGTTGCTGTGTCCAGTGAGGAC.............................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................AATTTAACGACAGTTGCTG............................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTCCAGTGAGGACAGCAGCGAGCCGCAG............... 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................CAACGATTGCAACAGCCATGGC.................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................CATGGCTTCGGTGACGGCA..................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GTTTCCAGTGAGGACAGCA.......................... 19 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTCGTTGTCGTCAAAACCGCC..................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................TGTGAGCTTCGGCGCCAGTG.................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGTGAGGACGGCAGCGAGC.................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................TTAACACCGCCGCCTACAATA........................................................................................................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CTCGTTATCGTCAAAACCGC...................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............ATCATCATCAATGAAGGC............................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CAGTAGCAGCAGTAGTAGTAGTTACCTTCGCAGGTGCAACAGCAGTTGTGGCGGCGGCTGTTGTAGAAACGGTCGGCGGCGTGACACGCTAAGCCGCTGTCACCGGCGGCACCGCCGTAGAGTTAAAAACTGTTGCTAACGTTGTCGGTACCGAAGCCACTGCCGTCGTCGACGATGACCGTGCGGGATTAAATTGCTGTCAACGACACAGGTCACTCCTGTCGTCGCTCGGCGTCGGCGTCTGTGTTGGT
**************************************************************************************************************.....((..((((((.((((((((......)).))))))........))))))......................))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 M027
male body		 SRR060663
160_0-2h_embryos_total
 V053
head
 M047
female body
 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR1106729
mixed whole adult body
 SRR060659
Argentina_testes_total
 SRR060666
160_males_carcasses_total
......................................................................................................................................................CCGAAGCCCCTGCCGTCGTCGACGAA........................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................CGGAGTAACACGCTAAGCCG........................................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................GGCGGCACCGCCGTAGAGTT............................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CTATCGTTGTCGTTACCGAAG............................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................CCGTAGGGTCAAGAACTGTTG.................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
CAGTAGCAGCAGTAGTAG......................................................................................................................................................................................................................................... 18 0 10 0.30 3 0 0 0 0 1 0 1 1 0 0 0 0
....................................................GGCAGCTATAGTAGAAACGG................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGCTAACTACGACACAGGTC..................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0
CAGTAGCAGCAGTAGTAGT........................................................................................................................................................................................................................................ 19 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0
...TAGCAGCAGTAGTAGTAG...................................................................................................................................................................................................................................... 18 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 1 1
.........................................GCAGTAGTGGAGGCGGATGT.............................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................AAGTTGCTGTCGACGACA........................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0
................................................TGGCCGCGGCTGTTG............................................................................................................................................................................................ 15 1 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................GCTGTAATCGACACAGGGC..................................... 19 3 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12822:1478113-1478363 + dvi_2507 GTCATCGTC-----------------GTCATCA------------------------------TCATCAATGGAAGCGTCCACGTTGT-CGTCAACACCGC--CGCCGACA------------A---CATCTTTGCCAG------CCGCCGCACTGTGCGATTCGGCGACAGTGGCCGCCGTGGCGGC-----------------------------------------ATCTCAA------------TTTTTGACAACGATTGCAACAGCCATGG---CTTC------------------------------------------------------------GGTGACGGCAGCAGC--------------------TGCTACTGGCACGC--------------CCTAATTT-------------AACGACAGTTGCTGTG--------TCC----------------------------------------------------AGTGAGGACAG-----------------------------------------------------CAGCGAGC-----------CGCA---------------------------------GCCGCAGACACAACCA-----------------
droMoj3 scaffold_6540:11628177-11628397 - GTCATCCAC-----------------GTCACCA------------------------------A------TGGAAACGTCCACATCGT-CT-----------------------ACATCGCCCA---CATCTTCGCCAG------CCACGGCGCTTTGCGATTCGGCAACAGTGGTTGCTGTGGCAGC-----------------------------------------GTCTCAA------------TTTTTGTCAACGATTGCAACAGCCATGGCTGCCTC------------------------------------------------------------GGTTACGGCAGCAAC-----------------------------------------CAGCACGCCCAGTCT-------------AGCG--------------------------------------------------------------------------------------ACT---TCTGTGGTCA---------------------------GCGAGGACAACAGCGAGC-CGCAGAC------CCA--------------------------------------------------------------GA
droGri2 scaffold_14624:2524177-2524480 + TGCATCGGCAAT--------------GGATGTTGCGTCCACGTCCTCATCATCATCAGCATCATC---AC------------CATCAC-CATCAGCAGCAG--CAACAACA------------T---CATCATCGCCAACATCCGCTGCTGCACTCTGCGATTCGGCGACAGTGGCCGCTGTGGCAGC-----------------------------------------ATCTCAA------------TTTCTAACAACGATTGCAACAGCCATGGCTGCCTC------------------------------------------------------------GGTGACGGCGGCAGC--------------------TAGCAC------GCCCAACACCAACAACAACAACTT-------------GACG-----------------------TC--------------------------------------------------A----------CCGACTGCTGCTGCCGCTGCAGTGTCTTTGCCTGTGCCCATTAACTGTGCCGACAGCGACAGT-CAG-------------------------------------------------------A-----------------CA
droWil2 scf2_1100000004943:10965078-10965299 + GTCATCATC-----------------ATCATCT---T------CGTCATCATCCTC---------------------------GTTAT-CT--------------------TCATCG------C---CTC------CGA------CACCGGTGCTGTGCGATTCCGCGACAGTAGTTGCAGTAGCAGC--------------------------------------CGCCTCACAA------------TTGTTTACAACAATTGCTTCGGCCATGGCAGCATC------------------------------------------------------------TGCAGCCGCCAC--------------------------------------------AACTACGTCCAGCCT-------------GGCA---ACAG-----CAAACGCA---CC--------------------------------------------------GGCAACA----TCAGAACCGACTGTAA---------------------------ACAGTTTAGATAGCGA-----------------------------------------------------------------------------------
dp5 2:10067351-10067591 + ATCGTCGTC-----------------ATCATCA------------------------------TCATCGCTTGAAGCGTCCACGTCAT-CGTCCTC--------GTCCTCATCGTCACCGCCGA---GTACGTCGGCAG------CTGCTTCTCATTGCGATTCGGCGACAGTAGCTCAGGTGGTGGC-----------------------------------------CAGTCAG------------TTTTT---AACGATCGC------GATCGCAGCGTC------------------------------------------------------------CGTGACAGCGGCAGC--------------------TAC---------------ATCGGCTGCCCCCAATCT-------------GGCT--------------------------------------------------------------------------------------CCAGCACCCACTGCGG---------------------------CCGATCCCGACATTGAGCCCGCCGAC------TCA----------------------------------------------------------------
droPer2 scaffold_0:10413902-10414112 - GTCATCTTC-----------------GGCGTCA------------------------------TC---------------------------------------GTCCTCATCGTCACCGCCGA---GTACGTCGGCAG------CTGCTTCTCATTGCGATTCGGCGACAGTAGCTCAGGTGGTGGC-----------------------------------------CAGTCAG------------TTTTT---AACGATCGC------GATCGCAGCGTC------------------------------------------------------------CGTGACAGCGGCAGC--------------------TAC---------------ATCGGCTGCCCCCAATCT-------------GGCT--------------------------------------------------------------------------------------CCAGCCCCAACTGTGG---------------------------CCGATCCCGACATTGAGCCCGCCGAC------TCA----------------------------------------------------------------
droAna3 scaffold_13340:10526126-10526344 - GTCATCATC-----------------ATCCTCT---T------CCTCGTCATCCTCGT------------------------------------------------------CATCACCACCAG---GCCCCTC------------AGCATCTCTCTGCGATTCGGCGACGGTGGCAGCGGTGGCTGC-----------------------------------------CTCACAG------------TTTCTTTCAACAATCGCTACCGCAATGGCGGCATC------------------------------------------------------------CGTTACGGCAGCGGC--------------------GGCTAC------------CACCTCATCCTCTATCCC-------------GTCG--------------------------------------------------------------------------------------GCGGGACCGTCTGTTT---------------------------CCAGTCCAGATACCGATGCAGTTGA--------------------------------------------------------------------------
droBip1 scf7180000396708:5541415-5541619 - GTCATCCTC-----------------GTCG------------------------------------------------------------------------------------TCACCACCCG---GCCCCTCG------------GCATCTCTCTGCGATTCTGCGACGGTGGCAGCGGTGGCTGC-----------------------------------------CTCACAG------------TTTCTTTCAACAATCGCTACCGCAATGGCAGCATC------------------------------------------------------------CGTTACGGCAGCGGC--------------------GGCTAC------------CACCTCATCCTCCATCCC-------------GTCA--------------------------------------------------------------------------------------GCGGGATCGTCTGTTT---------------------------CCAGTCCAGATAGCGATGCAGTCGAC------GCCCAG-------------------------------------------------------------
droKik1 scf7180000302706:526751-526990 + GTCATCGTC-----------------CTC---------------------------------------------------------------------------------------GCCACCAGGCAGCTCATCGGCAG------GCGCATCTCTGTGCGATTCCGCGACAGTGGCCGCCGTGGCAGC-----------------------------------------TTCACAG------------TTTCTCACCACAATCGCCACTGCGATGGCGGCATC------------------------------------------------------------TGTGACGGCGGCGACTTC-----CGGTAC------GAGCAG------------CAGCAGTTCACCCAACCT-------------ATCG--------------------------------------------------------------------------------------CCAGCTCCGGCTGTTG---------------------------CCAGTCCAGATATCGAGAGTGGCGAT------GCTCAGTTGCCTCC------------------------CAGCGATGACCT-----------------
droFic1 scf7180000453912:16129-16357 + ATCATCGTC-----------------CTCATC------------CTCATCGTCTTCGT------------------------------------------------------CCTCGCCGCCGG---GTCCATCAGCGG------CCGCAGCTCTGTGCGATTCGGCGACAGTGGCAGCCGTGGCAGC-----------------------------------------TTCACAG------------TTTCTCACAACGATCGCCACGGCCATGGCGGCGTC------------------------------------------------------------TGTGACGGCGGCGGC--------------------GGCCAC------------AAGCAACTCCACCAGCCT-------------GTCA--------------------------------------------------------------------------------------CCGGCCCCGGCTGTCT---------------------------CCAGTCCGGATATCGAGAACGCCGAT------GCCCAG-------------------------------------------------------------
droEle1 scf7180000491023:1063374-1063605 - CTCCTCGAC-----------------GCACTCC---T------CGTCGACGGCCTC------------------------------------------------GCCCACAACGGCGGCGGCAG---CTGCTCTGGCCG------CCGCATCCTATTACGGCAGTGCAGCGGCAGCAGCGGCGGCGGCTTTTACGGCAC---CAT------------------------A--TCAGCACCATCATCATCATCATGCAGCGGCGGCGGCAGCAGCG------GC------------------------------------------------------------C---------------------------------------------CAT--------------CATCATGC-------------GG-------------------------------------------------------------------------------CGGCAGCAG----CA-------------------------------------------------------------GCGGCAGCG---------------------------------GCGGCAGCAGCGGCGGCCCATCACACACATGGC
droRho1 scf7180000769095:46057-46258 - GTCCTC--------------------------------------------------------------------------------------------------------------GCCGCCAG---GCTCTTCTGCTG------CCGCATCTTTGTGCGATTCAGCGACGGTTGCCGCCGTGGCAGC-----------------------------------------TTCACAG------------TTTCTCTCAACGATCGCCACGGCTATGGCGGCGTC------------------------------------------------------------TGTGACGGCGGCGGC--------------------GGCTAC------------AAGCAGCTCGCCCAGTCT-------------GTCA--------------------------------------------------------------------------------------CCAGCTCCTGCTGTCT---------------------------CCAGTCCTGATATCGAGAGCGCAGAC------GCCCAG-------------------------------------------------------------
droBia1 scf7180000302126:3411592-3411836 - GAGAGCAGCGGCCTCCATATGGCAGCGGCAGCG------------------------------GCGGCAG------------------------------------------CAGC------------------------------------------------AGCGGCGGCGGCGGCAGCGGCTGC---CTCGGCGG---CCA------------------------AGCTCAG------------TGCCCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------TGG-------------AGCAGCAGCAG-----CAGCAGCA---GCAGAGTGCCAGTGCCCTGGACATGGCCACGCCCATTGCCCCGCCCCCGCCCAG-----------------------------------------------------TAGCCTGCTGGGCGGCAACAGCAAC------ACCAGCTTCTCCACCAACAACAACAGCAACCACGCCCTCAGCTCCACG-----------------CA
droTak1 scf7180000415380:343781-343970 + GCCC-----------------------------------------------------------------------------------------------------------------------G---GCTCGTCAGCGG------CCGCATCTCTCTGCGATTCGGCGACAGTGGCCGCCGTGGCAGC-----------------------------------------TTCTCAG------------TTTCTCTCAACGATCGCCACGGCCATGGCGGCGTC------------------------------------------------------------TGTGACGGCGGCGGC--------------------GGCCAC------------CAGCAGCTCGCCCAACCT-------------GTCG--------------------------------------------------------------------------------------CCAGCTCCGGCTGTCT---------------------------CCAGTCCGGACATCGAGAGCGCCGAT------GCC----------------------------------------------------------------
droEug1 scf7180000409122:980383-980612 + ATCATCATC-----------------ATCACCA------------------------------TCAGCAGTCGC------------------------------------------------------------------------------------------AGCAGCAGCAACAGCAGCAACATC-----------------------------------------ATCATCA------------CCATCAGCAACAGTTGCTACTGCAACAGCAACTCCTGCAGCAACATGTGGCC-A-----------ACAGTTCGCCATTGCAACATCTGAGCAATCTGTTTGGCCAGCATT--------------------TGC--------------------CTACGCACAGCCTGCAGCATTTGATTGCCG--------------------CCG----------------------------------------------------AGTACTGGCAG----CA-------------------------------------------------------------ACAGCAACA---------------------------------ACAGCAGCATCAACAA-----------------
dm3 chrX:12608741-12609001 - GC-AGCAGC-----------------GGCAGCA------------------------------GCAGCAGCGGCAGCGGCTGCGGCGGCCGTCAATCCTGGTTACCCGCCATCA---------T------CCG---CAGCA-G--CGGCG------------------------------------------------GCAGTTAACTCCGGTTACCCGCCACGGCCCC------------------------------------------------------CGCAGCATCGTTTTATCCAGAACACGGGCTATAG----------CATT------GCC-CCGGCGCC---------TACCTAC-CGAGATAATCCCTACTCGCGCCACACCC--------------AAATTC-------------AGCAGCAGCAG-----CAGCAGCA---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------GCAGCAGCA---------------------------------ACAGCAGCAGCAACAA-----------------
droSim2 3r:11662089-11662308 - TTCATCCTC-----------------GTCGTCA---------------------TCGT------------------------------------------------------CCTCGCCGCCCG---GCTCATCGGCCG------CAGCATCGCTATGCGATTCGGCGACAGTAGCCGCCGTGGCAGC-----------------------------------------ATCACAG------------TTTCTCTCAACGATCGCCACAGCCATGGCGGCCTC------------------------------------------------------------TGTGACGGCGGCGGC--------------------GGCAAC------------AAACAGCTCGCCGAGCAT-------------TTCG--------------------------------------------------------------------------------------CCCGCTCCGGCTGTGT---------------------------CCAGTCCGGATATCGAGAACGCCGAC------GCCCAG-------------------------------------------------------------
droSec2 scaffold_21:363010-363269 - GC-AGCAGC-----------------GGCAGCA------------------------------GCAGCAGCGGCAGCGGCTGCGGCGGCCGTCAACCCCGGTTACCCGCCATCA---------T------CCG---CAGCA-G--CGGCG------------------------------------------------GCAGTCAACTCCGGTTACCCGCCACGGCCCC------------------------------------------------------CGCAGCATCGTTTTATCCAGAACACGGGCTATAG----------CATT------GCCCCCGGCGCC---------TACCTACCCGAGATAATCCCTACTCGCGCCACACCC--------------AAATTC-------------AGCAACAGCAG-----CAGCAGCA---A-----------------------------------------------------CAGCAGCAA----CA-------------------------------------------------------------GCAGCAACA---------------------------------GCAGCAGCAACAGCAG-----------------
droYak3 3R:13825171-13825372 + GTCCTCG--------------------------------------------------------------------------------------------------------------CCGCCTG---GCTCATCAGCCG------CAACATCGCTTTGCGATTCGGCGACAGTAGCCGCCGTGGCAGC-----------------------------------------ATCACAG------------TTTCTCTCAACGATCGCCACGGCCATGGCTGCCTC------------------------------------------------------------CGTGACAGCGGCGGC--------------------GGCAAC------------AAACAGCTCGCCGAGCCT-------------TTCG--------------------------------------------------------------------------------------CCAGCTCCGGCTGTCT---------------------------CCAGTCCGGATATTGAGAACGCCGAC------GCCCAG-------------------------------------------------------------
droEre2 scaffold_4770:12118426-12118659 - ATCATCGGC-----------------GTCATCG---TCTTCATCCTCGTCGTCCTCG------------------------------------------------------TCCTCGCCGCCCG---GCTCATCGGCCG------CAGCATCACTTTGCGATTCGGCGACAGTGGCCGCCGTGGCAGC-----------------------------------------ATCAAAG------------TTTCTCTCAACGATCGCCACGGCCATGGTAACCTC------------------------------------------------------------TGTGACGACGGTGGC--------------------GGGAAC------------AAACAGTTCGCCGAGCCT-------------ATCG--------------------------------------------------------------------------------------CCAGCTCCGGCTGTCT---------------------------CCAGTCCGGATATCGAGAACGCCGAC------GC-----------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTCATCGTC-----------------GTCATCA------------------------------TCATCAATGGAAGCGTCCACGTTGT-CGTCAACACCGC--CGCCGACA------------A---CATCTTTGCCAG------CCGCCGCACTGTGCGATTCGGCGACAGTGGCCGCCGTGGCGGC-----------------------------------------ATCTCAA------------TTTTTGACAACGATTGCAACAGCCATGG---CTTC------------------------------------------------------------GGTGACGGCAGCAGC--------------------TGCTACTGGCACGC--------------CCTAATTT-------------AACGACAGTTGCTGTG--------TCC----------------------------------------------------AGTGAGGACAG-----------------------------------------------------CAGCGAGC-----------CGCA---------------------------------GCCGCAGACACAACCA-----------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................CTCAA------------TTTTTGACAACGATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000002
.................................................................................................................................TCTTTGCCAG------CCGCCGCACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................GTGCGATTCGGCGACAGTGGCCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................GCACTGTGCGATTCGGCGACAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGAGC-----------CGCA---------------------------------GCCGCAGA.........................2011.001000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................TGG---CTTC------------------------------------------------------------GGTGACGGCAGCC...............................................................................................................................................................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC----------------------------------------------------AGTGAGGACAG-----------------------------------------------------CAGCGA...................................................................................1911.001000000000000000000000000000000000100000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAG-----------------------------------------------------CAGCGAGC-----------CGCA---------------------------------GCCGCAGA.........................2511.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................AA------------TTTTTGACAACGATTG...........................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGTG--------TCC----------------------------------------------------AGTGAGG..................................................................................................................................................1911.001000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTTGCTGTG--------TCC----------------------------------------------------AGTGAGGAC................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................ATCTCAA------------TTTTTGACAACGAT.............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................CATCTTTGCCAG------CCGCCGCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC----------------------------------------------------AGTGAGGACAG-----------------------------------------------------CAGCGAGC-----------......................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
.........................................................................................CGTCAACACCGC--CGCCGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC----------------------------------------------------AGTGAGGACAG-----------------------------------------------------CAGCGAGC-----------CGCA---------------------------------GC...............................2811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................A------------A---CATCTTTGCCAG------CCGCCGCACTGTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CAACGATTGCAACAGCCATGG---CTTC------------------------------------------------------------G...........................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................CGACA------------A---CATCTTTGCCAG------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTAATTT-------------AACGACAGTTGCTGTG--------TC..............................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
....................................................................AATGGAAGCGTCCACGTTGT-CGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...............................CA------------------------------TCATCAATGGAAGCGTCCACGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGCTGTG--------TCC----------------------------------------------------AGTGAGGA.................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................CTGTGCGATTCGGCGACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TTTTGACAACGATTGCAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................AGCCATGG---CTTC------------------------------------------------------------GGTGACGGC...................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................TGACAACGATTGCAACAGCCAT.................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AATTT-------------AACGACAGTTGCT...........................................................................................................................................................................................................................1811.001000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------------------------------CAGCGAGC-----------CGCA---------------------------------GCCGCAG..........................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................CGCCGCACTGTGCGATTCGGCGACAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGTTGCTGTG--------TCC----------------------------------------------------AGTGAGGAC................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AATTT-------------AACGACAGTTGCTG..........................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
...............................................................................................................................................................................................................................................................CAACGATTGCAACAGCCATGG---C...........................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CATGG---CTTC------------------------------------------------------------GGTGACGGCA..................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000001000000000000000000000000000000
droMoj3
GTCATCCAC-----------------GTCACCA------------------------------A------TGGAAACGTCCACATCGT-CT-----------------------ACATCGCCCA---CATCTTCGCCAG------CCACGGCGCTTTGCGATTCGGCAACAGTGGTTGCTGTGGCAGC-----------------------------------------GTCTCAA------------TTTTTGTCAACGATTGCAACAGCCATGGCTGCCTC------------------------------------------------------------GGTTACGGCAGCAAC-----------------------------------------CAGCACGCCCAGTCT-------------AGCG--------------------------------------------------------------------------------------ACT---TCTGTGGTCA---------------------------GCGAGGACAACAGCGAGC-CGCAGAC------CCA--------------------------------------------------------------GASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------------GCGAGGACAACAGCGAGC-C...............................................................................2112.002100100
.......................................................................................................................................................................................................................................................................GCAACAGCCATGGCTGCCTC------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................2011.001000010
......................................................................................................................................................................CAACAGTGGTTGCTGTGGCAGC-----------------------------------------GTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..................................................................................................................................CTTCGCCAG------CCACGGCGCTTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................TCCACATCGT-CT-----------------------ACATCGCCCA---CATCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
...............................................................A------TGGAAACGTCCACATCGT-CT-----------------------ACATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.........................................................................................................................................................................CAGTGGTTGCTGTGGCAGC-----------------------------------------GT............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................................................GCCCA---CATCTTCGCCAG------CC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.......................................................................................................................................................................AACAGTGGTTGCTGTGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................AACAGTGGTTGCTGTGGCAGC-----------------------------------------GT............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGTCT-------------AGCG--------------------------------------------------------------------------------------ACT---TCTGTG..................................................................................................................................2111.001100000
...........................TCACCA------------------------------A------TGGAAACGTCCACATCGT-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT---TCTGTGGTCA---------------------------GCGAGGACA..........................................................................................2211.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------GCGAGGACAACAGCGAGC-C...............................................................................2011.001100000
..........................................................................................................................................................................................................................................AA------------TTTTTGTCAACGATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................GCAAC-----------------------------------------CAGCACGCCCAGT.......................................................................................................................................................................................................................................................1811.001100000
droGri2
TGCATCGGCAAT--------------GGATGTTGCGTCCACGTCCTCATCATCATCAGCATCATC---AC------------CATCAC-CATCAGCAGCAG--CAACAACA------------T---CATCATCGCCAACATCCGCTGCTGCACTCTGCGATTCGGCGACAGTGGCCGCTGTGGCAGC-----------------------------------------ATCTCAA------------TTTCTAACAACGATTGCAACAGCCATGGCTGCCTC------------------------------------------------------------GGTGACGGCGGCAGC--------------------TAGCAC------GCCCAACACCAACAACAACAACTT-------------GACG-----------------------TC--------------------------------------------------A----------CCGACTGCTGCTGCCGCTGCAGTGTCTTTGCCTGTGCCCATTAACTGTGCCGACAGCGACAGT-CAG-------------------------------------------------------A-----------------CASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................TGCACTCTGCGATTCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGCCGCTGCAGTGTCTTT.................................................................................................................2311.00110
.............................................................................................................................................................................................................................................................................GCCATGGCTGCCTC------------------------------------------------------------GGTGACGGC...................................................................................................................................................................................................................................................................................................................2311.00110
...........................................................ATCATC---AC------------CATCAC-CATCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110
......................................................................................................................................................GCACTCTGCGATTCGGCGACAGTGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
...........................................................................................TCAGCAGCAG--CAACAACA------------T---C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.17110
.............................................TCATCATCATCAGCATCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05110
droWil2
GTCATCATC-----------------ATCATCT---T------CGTCATCATCCTC---------------------------GTTAT-CT--------------------TCATCG------C---CTC------CGA------CACCGGTGCTGTGCGATTCCGCGACAGTAGTTGCAGTAGCAGC--------------------------------------CGCCTCACAA------------TTGTTTACAACAATTGCTTCGGCCATGGCAGCATC------------------------------------------------------------TGCAGCCGCCAC--------------------------------------------AACTACGTCCAGCCT-------------GGCA---ACAG-----CAAACGCA---CC--------------------------------------------------GGCAACA----TCAGAACCGACTGTAA---------------------------ACAGTTTAGATAGCGA-----------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................GTAGCAGC--------------------------------------CGCCTCACAA------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCA---CC--------------------------------------------------GGCAACA----TCAGAACC......................................................................................................................................2312.00211000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCA---CC--------------------------------------------------GGCAACA----TCAGAAC.......................................................................................................................................2311.00100010
.............................ATCT---T------CGTCATCATCCTC---------------------------GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
................................................................................................................................................................................................................................................................................................................................................................CAC--------------------------------------------AACTACGTCCAGCCT-------------GGCA---ACAG-----C.......................................................................................................................................................................................................................2711.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGCA---CC--------------------------------------------------GGCAACA----TCA...........................................................................................................................................2011.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA----TCAGAACCGACTGTAA---------------------------AC.................................................................................................2211.00101000
..........................................................................................................................................A------CACCGGTGCTGTGCGATTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
......................................................................................................................................................................................................................................................................TGCTTCGGCCATGGCAGCATC------------------------------------------------------------TGCA........................................................................................................................................................................................................................................................................................................................2511.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCAGCCT-------------GGCA---ACAG-----C.......................................................................................................................................................................................................................1911.00100010
................................................................................................................CATCG------C---CTC------CGA------CACCGGTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------GGCAACA----TCAGAACCGACTGT................................................................................................................................2211.00101000
....................................................................................................................................................................................................................................................................ATTGCTTCGGCCATGGCAGCATC------------------------------------------------------------TGCAGC......................................................................................................................................................................................................................................................................................................................2911.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACA----TCAGAACCGACTGT................................................................................................................................2111.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................T-------------GGCA---ACAG-----CAAACGCA---CC--------------------------------------------------GGCAACA----TC............................................................................................................................................2811.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAA---------------------------ACAGTTTAGATAGCGA-----------------------------------------------------------------------------------2011.00100100
...............................................................................................................................CTC------CGA------CACCGGTGCTGTGCGATTCCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
dp5
ATCGTCGTC-----------------ATCATCA------------------------------TCATCGCTTGAAGCGTCCACGTCAT-CGTCCTC--------GTCCTCATCGTCACCGCCGA---GTACGTCGGCAG------CTGCTTCTCATTGCGATTCGGCGACAGTAGCTCAGGTGGTGGC-----------------------------------------CAGTCAG------------TTTTT---AACGATCGC------GATCGCAGCGTC------------------------------------------------------------CGTGACAGCGGCAGC--------------------TAC---------------ATCGGCTGCCCCCAATCT-------------GGCT--------------------------------------------------------------------------------------CCAGCACCCACTGCGG---------------------------CCGATCCCGACATTGAGCCCGCCGAC------TCA----------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................GATCGCAGCGTC------------------------------------------------------------CGTGACAGCGGC................................................................................................................................................................................................................................................................................................................2412.0020000002000
.........................................................................................CGTCCTC--------GTCCTCATCGTCACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
..................................................................................................................................................................................................................................................................................CGCAGCGTC------------------------------------------------------------CGTGACAGCGGC................................................................................................................................................................................................................................................................................................................2111.0010000100000
...............................................................................................................................................................................................................................................................................GATCGCAGCGTC------------------------------------------------------------CGTGACAGCGG.................................................................................................................................................................................................................................................................................................................2311.0010000000001
...................................................................................................................................................................CGGCGACAGTAGCTCAGGTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
...............................................................................................................................................................GATTCGGCGACAGTAGCTCAGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.........................................................................................................TCCTCATCGTCACCGCCGA---GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................GATTCGGCGACAGTAGCTCAGGTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................GACAGCGGCAGC--------------------TAC---------------ATCGGCT................................................................................................................................................................................................................................................................2211.0010100000000
........................................................................GAAGCGTCCACGTCAT-CGTCCTC--------GT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..........................................................................................................................................................................AGTAGCTCAGGTGGTGGC-----------------------------------------CAGTCAG------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.....................................................................................................................................................TTCTCATTGCGATTCGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................................................................ATCGCAGCGTC------------------------------------------------------------CGTGACAGCGG.................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................TTCGGCGACAGTAGCTCAGGTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTGAGCCCGCCGAC------...................................................................1811.0010000010000
...................................................................CGCTTGAAGCGTCCACGTCAT-CGTCCTC--------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCT--------------------------------------------------------------------------------------CCAGCACCCACTGCGG---------------------------CC.................................................................................................2111.0010100000000
.............................................................................................................................................................................AGCTCAGGTGGTGGC-----------------------------------------CAGTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................CTCATTGCGATTCGGCGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
....................................................................................................................................................................................................................................................................................................................................................................GC--------------------TAC---------------ATCGGCTGCCCCCAATCT-------------GGCT--------------------------------------------------------------------------------------CC............................................................................................................................................2911.0010100000000
....................................................................................................................................................................GGCGACAGTAGCTCAGGTGGTGGC-----------------------------------------CAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010001000000
.....................................................................................................................................CGGCAG------CTGCTTCTCATTGCGATTCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000001
droPer2
GTCATCTTC-----------------GGCGTCA------------------------------TC---------------------------------------GTCCTCATCGTCACCGCCGA---GTACGTCGGCAG------CTGCTTCTCATTGCGATTCGGCGACAGTAGCTCAGGTGGTGGC-----------------------------------------CAGTCAG------------TTTTT---AACGATCGC------GATCGCAGCGTC------------------------------------------------------------CGTGACAGCGGCAGC--------------------TAC---------------ATCGGCTGCCCCCAATCT-------------GGCT--------------------------------------------------------------------------------------CCAGCCCCAACTGTGG---------------------------CCGATCCCGACATTGAGCCCGCCGAC------TCA----------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................C---------------------------------------GTCCTCATCGTCACCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.......................................................................................................................................................CTCATTGCGATTCGGCGACAGTAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
...................................................................................................................................................................................................................................................................GATCGC------GATCGCAGCGTC------------------------------------------------------------CGTGACA.....................................................................................................................................................................................................................................................................................................................2511.001010000
...............................................................................................................................GTACGTCGGCAG------CTGCTTCTCATTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........................................................................................................CTCATCGTCACCGCCGA---GTACGTCGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................................................................................................................................................GCTTCTCATTGCGATTCGGCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCCGACATTGAGCCCGCCGAC------T..................................................................2511.001100000
.......................................................................................................................................................CTCATTGCGATTCGGCGACAGTAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droAna3
GTCATCATC-----------------ATCCTCT---T------CCTCGTCATCCTCGT------------------------------------------------------CATCACCACCAG---GCCCCTC------------AGCATCTCTCTGCGATTCGGCGACGGTGGCAGCGGTGGCTGC-----------------------------------------CTCACAG------------TTTCTTTCAACAATCGCTACCGCAATGGCGGCATC------------------------------------------------------------CGTTACGGCAGCGGC--------------------GGCTAC------------CACCTCATCCTCTATCCC-------------GTCG--------------------------------------------------------------------------------------GCGGGACCGTCTGTTT---------------------------CCAGTCCAGATACCGATGCAGTTGA--------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCTCTATCCC-------------GTCG--------------------------------------------------------------------------------------GCG...........................................................................................................................................2111.001100000
...........................................CCTCGTCATCCTCGT------------------------------------------------------CATCACCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.................................................................................................................................................................................................................................................................................TGGCGGCATC------------------------------------------------------------CGTTACGGCAGCGGC--------------------.........................................................................................................................................................................................................................................................................................2511.001000001
...........................................................................................................................................................................................................................................................................................................................................................ACGGCAGCGGC--------------------GGCTAC------------CACCTCATCCTC...........................................................................................................................................................................................................................................................2911.001010000
...............................................................................................................................................................................................................................................................................AATGGCGGCATC------------------------------------------------------------CGTTACGGC...................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................GATTCGGCGACGGTGGCAGCGGTGGCTGC-----------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
.......TC-----------------ATCCTCT---T------CCTCGTCATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
........................................................................................................................................................................ACGGTGGCAGCGGTGGCTGC-----------------------------------------CTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................GCTAC------------CACCTCATCCTCTATCCC-------------GTC.....................................................................................................................................................................................................................................2611.001100000
droBip1
GTCATCCTC-----------------GTCG------------------------------------------------------------------------------------TCACCACCCG---GCCCCTCG------------GCATCTCTCTGCGATTCTGCGACGGTGGCAGCGGTGGCTGC-----------------------------------------CTCACAG------------TTTCTTTCAACAATCGCTACCGCAATGGCAGCATC------------------------------------------------------------CGTTACGGCAGCGGC--------------------GGCTAC------------CACCTCATCCTCCATCCC-------------GTCA--------------------------------------------------------------------------------------GCGGGATCGTCTGTTT---------------------------CCAGTCCAGATAGCGATGCAGTCGAC------GCCCAG-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GTCATCGTC-----------------CTC---------------------------------------------------------------------------------------GCCACCAGGCAGCTCATCGGCAG------GCGCATCTCTGTGCGATTCCGCGACAGTGGCCGCCGTGGCAGC-----------------------------------------TTCACAG------------TTTCTCACCACAATCGCCACTGCGATGGCGGCATC------------------------------------------------------------TGTGACGGCGGCGACTTC-----CGGTAC------GAGCAG------------CAGCAGTTCACCCAACCT-------------ATCG--------------------------------------------------------------------------------------CCAGCTCCGGCTGTTG---------------------------CCAGTCCAGATATCGAGAGTGGCGAT------GCTCAGTTGCCTCC------------------------CAGCGATGACCT-----------------SizeHit CountTotal NormTotal
No Reads
droFic1
ATCATCGTC-----------------CTCATC------------CTCATCGTCTTCGT------------------------------------------------------CCTCGCCGCCGG---GTCCATCAGCGG------CCGCAGCTCTGTGCGATTCGGCGACAGTGGCAGCCGTGGCAGC-----------------------------------------TTCACAG------------TTTCTCACAACGATCGCCACGGCCATGGCGGCGTC------------------------------------------------------------TGTGACGGCGGCGGC--------------------GGCCAC------------AAGCAACTCCACCAGCCT-------------GTCA--------------------------------------------------------------------------------------CCGGCCCCGGCTGTCT---------------------------CCAGTCCGGATATCGAGAACGCCGAT------GCCCAG-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTCCTCGAC-----------------GCACTCC---T------CGTCGACGGCCTC------------------------------------------------GCCCACAACGGCGGCGGCAG---CTGCTCTGGCCG------CCGCATCCTATTACGGCAGTGCAGCGGCAGCAGCGGCGGCGGCTTTTACGGCAC---CAT------------------------A--TCAGCACCATCATCATCATCATGCAGCGGCGGCGGCAGCAGCG------GC------------------------------------------------------------C---------------------------------------------CAT--------------CATCATGC-------------GG-------------------------------------------------------------------------------CGGCAGCAG----CA-------------------------------------------------------------GCGGCAGCG---------------------------------GCGGCAGCAGCGGCGGCCCATCACACACATGGCSizeHit CountTotal NormTotal
No Reads
droRho1
GTCCTC--------------------------------------------------------------------------------------------------------------GCCGCCAG---GCTCTTCTGCTG------CCGCATCTTTGTGCGATTCAGCGACGGTTGCCGCCGTGGCAGC-----------------------------------------TTCACAG------------TTTCTCTCAACGATCGCCACGGCTATGGCGGCGTC------------------------------------------------------------TGTGACGGCGGCGGC--------------------GGCTAC------------AAGCAGCTCGCCCAGTCT-------------GTCA--------------------------------------------------------------------------------------CCAGCTCCTGCTGTCT---------------------------CCAGTCCTGATATCGAGAGCGCAGAC------GCCCAG-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GAGAGCAGCGGCCTCCATATGGCAGCGGCAGCG------------------------------GCGGCAG------------------------------------------CAGC------------------------------------------------AGCGGCGGCGGCGGCAGCGGCTGC---CTCGGCGG---CCA------------------------AGCTCAG------------TGCCCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------TGG-------------AGCAGCAGCAG-----CAGCAGCA---GCAGAGTGCCAGTGCCCTGGACATGGCCACGCCCATTGCCCCGCCCCCGCCCAG-----------------------------------------------------TAGCCTGCTGGGCGGCAACAGCAAC------ACCAGCTTCTCCACCAACAACAACAGCAACCACGCCCTCAGCTCCACG-----------------CASizeHit CountTotal NormTotal
No Reads
droTak1
GCCC-----------------------------------------------------------------------------------------------------------------------G---GCTCGTCAGCGG------CCGCATCTCTCTGCGATTCGGCGACAGTGGCCGCCGTGGCAGC-----------------------------------------TTCTCAG------------TTTCTCTCAACGATCGCCACGGCCATGGCGGCGTC------------------------------------------------------------TGTGACGGCGGCGGC--------------------GGCCAC------------CAGCAGCTCGCCCAACCT-------------GTCG--------------------------------------------------------------------------------------CCAGCTCCGGCTGTCT---------------------------CCAGTCCGGACATCGAGAGCGCCGAT------GCC----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ATCATCATC-----------------ATCACCA------------------------------TCAGCAGTCGC------------------------------------------------------------------------------------------AGCAGCAGCAACAGCAGCAACATC-----------------------------------------ATCATCA------------CCATCAGCAACAGTTGCTACTGCAACAGCAACTCCTGCAGCAACATGTGGCC-A-----------ACAGTTCGCCATTGCAACATCTGAGCAATCTGTTTGGCCAGCATT--------------------TGC--------------------CTACGCACAGCCTGCAGCATTTGATTGCCG--------------------CCG----------------------------------------------------AGTACTGGCAG----CA-------------------------------------------------------------ACAGCAACA---------------------------------ACAGCAGCATCAACAA-----------------SizeHit CountTotal NormTotal
No Reads
dm3
GC-AGCAGC-----------------GGCAGCA------------------------------GCAGCAGCGGCAGCGGCTGCGGCGGCCGTCAATCCTGGTTACCCGCCATCA---------T------CCG---CAGCA-G--CGGCG------------------------------------------------GCAGTTAACTCCGGTTACCCGCCACGGCCCC------------------------------------------------------CGCAGCATCGTTTTATCCAGAACACGGGCTATAG----------CATT------GCC-CCGGCGCC---------TACCTAC-CGAGATAATCCCTACTCGCGCCACACCC--------------AAATTC-------------AGCAGCAGCAG-----CAGCAGCA---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------GCAGCAGCA---------------------------------ACAGCAGCAGCAACAA-----------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------GCAGCA.....................................................................25200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------...........................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.C-AGCAGC-----------------GGCAGCA------------------------------GCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG----CA-------------------------------------------------------------GCAGCAGCA---------------------------------ACAGCAGC.........................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------GCAGCA.....................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAG----CA-------------------------------------------------------------GCAGCAG....................................................................18200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------GCAGC......................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---GC--------------------------------------------------AGCAACAA.................................................................................................................................................18200.0510000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAG----CA-------------------------------------------------------------GCAGCAGCA---------------------------------A................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................C-------------AGCAGCAGCAG-----CAGCAGCA---GC--------------------------------------------------AGCAACA..................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAG-----CAGCAGCA---GC--------------------------------------------------.........................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------------------------------ACAGCAGCAGCAAC...................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG----CA-------------------------------------------------------------GCAGCAGCA---------------------------------ACAGC............................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---GC--------------------------------------------------AGCAACAACAG----C.........................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------GCA........................................................................22200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------GCAGC......................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG----CA-------------------------------------------------------------GCAGCAGCA---------------------------------ACAGC............................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------------------------------------GCAGCAGCA---------------------------------ACAGCAGCAGCA.....................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAG----CA-------------------------------------------------------------GCAGC......................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG----CA-------------------------------------------------------------GCAGCAGCA---------------------------------AC...............................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------GCAG.......................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------GCAGCAGC...................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAGCA------------------------------GCAGCAGCGGCAGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAG----CA-------------------------------------------------------------GCAGCAGCA---------------------------------ACA..............................23200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------------------------------ACAGCAGCAGCAACA..................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------GCAGC......................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG-----CAGCAGCA---GC--------------------------------------------------A........................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---------------------------------ACAGCAGCAGCAACAA-----------------21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG----CA-------------------------------------------------------------GCAGCAGCA---------------------------------ACAGCA...........................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------...........................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG----CA-------------------------------------------------------------GCAGCAGCA---------------------------------AC...............................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA---GC--------------------------------------------------AGCAACAACAG----CA-------------------------------------------------------------G..........................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAG-----CAGCAGCA---GC--------------------------------------------------AGC......................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------AGCAGCAGCAG-----CAGCAGC.................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG-----CAGCAGCA---GC--------------------------------------------------AGCA.....................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TTCATCCTC-----------------GTCGTCA---------------------TCGT------------------------------------------------------CCTCGCCGCCCG---GCTCATCGGCCG------CAGCATCGCTATGCGATTCGGCGACAGTAGCCGCCGTGGCAGC-----------------------------------------ATCACAG------------TTTCTCTCAACGATCGCCACAGCCATGGCGGCCTC------------------------------------------------------------TGTGACGGCGGCGGC--------------------GGCAAC------------AAACAGCTCGCCGAGCAT-------------TTCG--------------------------------------------------------------------------------------CCCGCTCCGGCTGTGT---------------------------CCAGTCCGGATATCGAGAACGCCGAC------GCCCAG-------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCCGGATATCGAGAACGC.............................................................................2115.00550000000000000000
..............................................................................................................................................................................................................................................................TCAACGATCGCCACAGCCATG................................................................................................................................................................................................................................................................................................................................................................................................2114.00430000000000001000
...........................................................................................................................................................ATGCGATTCGGCGACAGTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.00440000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCGAGAACGCCGAC------GCCC...............................................................2113.00312000000000000000
.........................................................................................................................................CG------CAGCATCGCTATGCGATTCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00210100000000000000
...........................................................................................................................................................................................................................................G------------TTTCTCTCAACGATCGCC.........................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000000000000000
..........................................................................................................................................G------CAGCATCGCTATGCGATTCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200200000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCGGATATCGAGAACGCC............................................................................2112.00220000000000000000
.........................................................................................................................................................CTATGCGATTCGGCGACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGATATCGAGAACGCCGA..........................................................................2112.00220000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCGGATATCGAGAACGCCGA..........................................................................2312.00200000020000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGAACGCCGAC------GCCCAG-------------------------------------------------------------2011.00100000000000001000
......................................................................................................................................................................CGACAGTAGCCGCCGTGGCAGC-----------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCCGGATATCGAGAACGCCGA..........................................................................2411.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGAGAACGCCGAC------GCCC...............................................................2011.00101000000000000000
...................................................................................................................................................................................................................................................................................GCGGCCTC------------------------------------------------------------TGTGACG.....................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
............................................................................................................................................................................................................................................................TCTCAACGATCGCCACAGCCA..................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCCGGATATCGAGAACGCC............................................................................2211.00100100000000000000
................................................................................................................................................................................................................................................................................ATGGCGGCCTC------------------------------------------------------------TGTGACGGC...................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
......................................................................................................................................................................................................................................TCACAG------------TTTCTCTCAACGATC............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGAACGCCGAC------GCCCAG-------------------------------------------------------------2111.00110000000000000000
...................................................................................................................CGCCGCCCG---GCTCATCGGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.........................................................................................................................................................................................................................................................TTCTCTCAACGATCGCCACAGCCAT.................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
..CATCCTC-----------------GTCGTCA---------------------TCGT------------------------------------------------------CCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.....CCTC-----------------GTCGTCA---------------------TCGT------------------------------------------------------CCTCGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
....................................................................................................................................................................................GTGGCAGC-----------------------------------------ATCACAG------------TTTCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.TCATCCTC-----------------GTCGTCA---------------------TCGT------------------------------------------------------C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAT-------------TTCG--------------------------------------------------------------------------------------CCCGCTCCGGC...................................................................................................................................1811.00101000000000000000
.......TC-----------------GTCGTCA---------------------TCGT------------------------------------------------------CCTCGCCGCCCG---....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCAT-------------TTCG--------------------------------------------------------------------------------------CCCGCTCCGGCT..................................................................................................................................2111.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------TTCG--------------------------------------------------------------------------------------CCCGCTCCGGCT..................................................................................................................................1811.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAACGCCGAC------GCCCAG-------------------------------------------------------------1911.00100001000000000000
.......................................................................................................................................................CGCTATGCGATTCGGCGACAGTAGCCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
.............................................................................................................................................................GCGATTCGGCGACAGTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------------------------CCAGTCCGGATATCGAGAACGCC............................................................................2511.00100000100000000000
.................................................................................................................................................................................................................................................................................TGGCGGCCTC------------------------------------------------------------TGTGACGG....................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
..........................................................................................................................................................TATGCGATTCGGCGACAGTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.............................................................................................................................................................................................................................................................CTCAACGATCGCCACAGCCATG................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.......................................................................................................................................................................................................................................................................................CCTC------------------------------------------------------------TGTGACGGCGGCGGC--------------------GG.......................................................................................................................................................................................................................................................................................2111.00100010000000000000
...............................................................................................................................................................................................................................................................CAACGATCGCCACAGCCATG................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
.....................................................................................................................................................ATCGCTATGCGATTCGGCGACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTCG--------------------------------------------------------------------------------------CCCGCTCCGGCTGT................................................................................................................................1811.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------TTCG--------------------------------------------------------------------------------------CCCGCTCCA.....................................................................................................................................15150.07100000000010000000
droSec2
GC-AGCAGC-----------------GGCAGCA------------------------------GCAGCAGCGGCAGCGGCTGCGGCGGCCGTCAACCCCGGTTACCCGCCATCA---------T------CCG---CAGCA-G--CGGCG------------------------------------------------GCAGTCAACTCCGGTTACCCGCCACGGCCCC------------------------------------------------------CGCAGCATCGTTTTATCCAGAACACGGGCTATAG----------CATT------GCCCCCGGCGCC---------TACCTACCCGAGATAATCCCTACTCGCGCCACACCC--------------AAATTC-------------AGCAACAGCAG-----CAGCAGCA---A-----------------------------------------------------CAGCAGCAA----CA-------------------------------------------------------------GCAGCAACA---------------------------------GCAGCAGCAACAGCAG-----------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......GC-----------------GGCAGCA------------------------------GCAGCAGCGGCAGCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.3311000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA----CA-------------------------------------------------------------GCAGCAACA---------------------------------GCAGCAGCAA.......................24200.1530030
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---------------------------------GCAGCAGCAACA.....................18200.1020020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAA----CA-------------------------------------------------------------GCAGCAACA---------------------------------GCA..............................22200.1020020
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACA---------------------------------GCAGCAGCAA.......................18200.1020020
.............................................................................................................................................................................................................................................................................................................................................................................................................................C-------------AGCAACAGCAG-----CAGCAGCA---A-----------------------------------------------------CAGCA..................................................................................................................................................26180.0610010
.............................AGCA------------------------------GCAGCAGCGGCAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAA----CA-------------------------------------------------------------GCAGCAACA---------------------------------GCAGC............................24200.0510010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---A-----------------------------------------------------CAGCAGCAA----CA-------------------------------------------------------------GCAGC......................................................................24200.0510010
.....CAGC-----------------GGCAGCA------------------------------GCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---A-----------------------------------------------------CAGCAGCAA----C.........................................................................................................................................19200.0510010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-----CAGCAGCA---A-----------------------------------------------------CAGCAGCA...............................................................................................................................................19200.0510010
droYak3
GTCCTCG--------------------------------------------------------------------------------------------------------------CCGCCTG---GCTCATCAGCCG------CAACATCGCTTTGCGATTCGGCGACAGTAGCCGCCGTGGCAGC-----------------------------------------ATCACAG------------TTTCTCTCAACGATCGCCACGGCCATGGCTGCCTC------------------------------------------------------------CGTGACAGCGGCGGC--------------------GGCAAC------------AAACAGCTCGCCGAGCCT-------------TTCG--------------------------------------------------------------------------------------CCAGCTCCGGCTGTCT---------------------------CCAGTCCGGATATTGAGAACGCCGAC------GCCCAG-------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................GACAGTAGCCGCCGTGGCAGC-----------------------------------------AT............................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201000010000
.......................................................................................................................................................................GACAGTAGCCGCCGTGGCAGC-----------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
........................................................................................................................................................GCTTTGCGATTCGGCGACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.........................................................................................................................................................................................................................................................................CACGGCCATGGCTGCCTC------------------------------------------------------------CGT.........................................................................................................................................................................................................................................................................................................................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTCT---------------------------CCAGTCCGGA.........................................................................................1811.00101000000000
................................................................................................................................................................................CGCCGTGGCAGC-----------------------------------------ATCACAG------------TTT........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.......................................................................................................................................................................GACAGTAGCCGCCGTGGCAGC-----------------------------------------ATCACA........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
........................................................................................................................................................................ACAGTAGCCGCCGTGGCAGC-----------------------------------------ATCACA........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.......................................................................................................................................................................GACAGTAGCCGCCGTGGCAGC-----------------------------------------ATCACAG------------T..........................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.......................................................................................................................................................CGCTTTGCGATTCGGCGACAGTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGGCTGTCT---------------------------CCAGTCC............................................................................................2011.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCT---------------------------CCAGTCCGGATATTGA...................................................................................2011.00100000010000
..........................................................................................................................................................................................................................................................TCTCTCAACGATCGCCACGGCC...................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................GGCAAC------------AAACAGCTCGCCGA.........................................................................................................................................................................................................................................................2011.00101000000000
.......................................................................................................................................................................................................................................CACAG------------TTTCTCTCAACGATCGCCAC.......................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AAC------------AAACAGCTCGCCGAGC.......................................................................................................................................................................................................................................................1911.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AC------------AAACAGCTCGCCGAGCCT-------------TT......................................................................................................................................................................................................................................2211.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGGATATTGAGAACGCCGAC------...................................................................2311.00100100000000
......................................................................................................................................................................CGACAGTAGCCGCCGTGGCAGC-----------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................GCTTTGCGATTCGGCGACAGTAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEre2
ATCATCGGC-----------------GTCATCG---TCTTCATCCTCGTCGTCCTCG------------------------------------------------------TCCTCGCCGCCCG---GCTCATCGGCCG------CAGCATCACTTTGCGATTCGGCGACAGTGGCCGCCGTGGCAGC-----------------------------------------ATCAAAG------------TTTCTCTCAACGATCGCCACGGCCATGGTAACCTC------------------------------------------------------------TGTGACGACGGTGGC--------------------GGGAAC------------AAACAGTTCGCCGAGCCT-------------ATCG--------------------------------------------------------------------------------------CCAGCTCCGGCTGTCT---------------------------CCAGTCCGGATATCGAGAACGCCGAC------GC-----------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................TCTCTCAACGATCGCCACGG.....................................................................................................................................................................................................................................................................................................................................................................................................2012.0022000000
...........................................................................................................................................................TTGCGATTCGGCGACAGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0021000100
............................................................................................................................................................................................................................................................................................................................................................................................................AAACAGTTCGCCGAGCCT-------------AT......................................................................................................................................................................................................................................2012.0020000110
....................................................................................................................................................CATCACTTTGCGATTCGGCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................AC------------AAACAGTTCGCCGAGCCT-------------A.......................................................................................................................................................................................................................................2111.0010000100
.......................................................................................................................................................................GACAGTGGCCGCCGTGGCAGC-----------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
......................................TTCATCCTCGTCGTCCTCG------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................AAACAGTTCGCCGAGCCT-------------ATCG--------------------------------------------------------------------------------------CC............................................................................................................................................2411.0010000100
........................................................................................................................................................................................................................................................................................................................................................GTGACGACGGTGGC--------------------GGGAAC------------A......................................................................................................................................................................................................................................................................2111.0011000000
.............................................................................................................................................................GCGATTCGGCGACAGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................C------------AAACAGTTCGCCGAGCCT-------------AT......................................................................................................................................................................................................................................2111.0010000010
...............................................................................................................................................................................................................................................................CAACGATCGCCACGGCCATGG...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...........................................................................................................................................................................................................................................G------------TTTCTCTCAACGATCGCCAC.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................AC------------AAACAGTTCGCCGAGCCT-------------ATCG--------------------------------------------------------------------------------------CCA...........................................................................................................................................2711.0010000010
..........................................................................................................................................................TTTGCGATTCGGCGACAGTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000100

Generated: 05/17/2015 at 05:14 AM