ID:

dvi_2466

 Coordinate:

scaffold_12822:1316157-1316340 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_14250:4]; CDS [Dvir\GJ14297-cds]; CDS [Dvir\GJ14297-cds]; exon [dvir_GLEANR_14250:3]; intron [Dvir\GJ14297-in]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTTCCAGAACACCGAGTTTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTTTATGATTTTATTTAAACAACTTTTAAGTTCTATTTGTTTACTTATTTATTTAGCTGCGATAGCCAAGCTTAACTAAAACCCCAAGCACCGCATGTCACACTATATAAAGAGACAACAATTTACAACTTGGTCGACTATATGTATACCCTTTCGCCCCCCCCTTCTCTGTATTGCAGCACTATCGCACCGTCAGCCCGGGTCTGATACTGCGCGAGTACGGCCGGCC
**************************************************..((((((.............)))))).....(((((.((.(((((..(((.(((((.(((.((.((((((...((((............))))...)).)))).))))).))))))))..)))))..)).)))))(((..((.....))..)))..................((((...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060670
9_testes_total
 SRR060681
Argx9_testes_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 V116
male body		 SRR060668
160x9_males_carcasses_total
 M028
head
 M047
female body
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR1106727
larvae
 SRR060682
9x140_0-2h_embryos_total
 M027
male body		 SRR060658
140_ovaries_total
 GSM1528803
follicle cells		 SRR060662
9x160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
....................................................................................................................................................................................................................................TTGCAGCACTATCGCACCGTCAG................................. 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AAGCGCCAGATGTCACACT............................................................................................................................. 19 3 19 1.37 26 0 0 0 1 1 0 0 0 0 0 0 0 0 13 0 0 0 3 3 2 1 1 1
........ACACCGAGTTTTAATGGTT................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GTTTTAATGGTTCACTTTATTCCTC.................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GTTCACTTTATTCCTCTAGCCGCAAGCA........................................................................................................................................................................................................................................ 28 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................TCACTTTATTCCTCTAGCCGCAAGCACT...................................................................................................................................................................................................................................... 28 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................CACCGTCAGCCCGGGTCT........................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................ATCGCACCGTCAGCCCGGGTCTG....................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................GCCGCAAGGTTTGTTTTAT............................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CTGTATTGCAGCACTATCGCACCGTCA.................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AGCCCGGGTCTGATACTGCGCG............. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TATCGCACCGTCAGCCCGGGTCTGAT..................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TTTATTCCTCTAGCCGCAAGGTTTGTT................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................ACTATCGCACCGTCAGCCCGGGT.......................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TATCGCACCGTCAGCCCGGGTCTGA...................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TCAGCCCGGGTCTGATACTGCGCGAG........... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GCCCGGGTATGATCCTTCG............... 19 3 3 0.67 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TGGTCGACTGGATGTATGCC............................................................................... 20 3 4 0.50 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TGCGCGAGTACGGCT.... 15 1 7 0.29 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
................................................................................................................................................................................................................................................CGGACCGTAAGCGCGGGT.......................... 18 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................ACTCAGTATATAAAGAGAC................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TTAGTGCGCGAGTACGGCT.... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

CAAGGTCTTGTGGCTCAAAATTACCAAGTGAAATAAGGAGATCGGCGTTCCAAACAAAATACTAAAATAAATTTGTTGAAAATTCAAGATAAACAAATGAATAAATAAATCGACGCTATCGGTTCGAATTGATTTTGGGGTTCGTGGCGTACAGTGTGATATATTTCTCTGTTGTTAAATGTTGAACCAGCTGATATACATATGGGAAAGCGGGGGGGGAAGAGACATAACGTCGTGATAGCGTGGCAGTCGGGCCCAGACTATGACGCGCTCATGCCGGCCGG
**************************************************..((((((.............)))))).....(((((.((.(((((..(((.(((((.(((.((.((((((...((((............))))...)).)))).))))).))))))))..)))))..)).)))))(((..((.....))..)))..................((((...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060666
160_males_carcasses_total
 SRR060659
Argentina_testes_total
 SRR060664
9_males_carcasses_total
 SRR060655
9x160_testes_total
 SRR060687
9_0-2h_embryos_total
 V053
head
 SRR060678
9x140_testes_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 V116
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060677
Argx9_ovaries_total
.................................TAAGGGGATGGGTGTTCC......................................................................................................................................................................................................................................... 18 3 20 3.90 78 0 49 1 0 0 0 0 1 11 0 9 0 0 0 0 5 0 0 0 1 0 0 0 0 0 1
........................................................................................................................GGTTTAAATTGATATTGGGG................................................................................................................................................ 20 3 20 2.55 51 0 2 0 0 0 15 0 2 1 1 1 9 6 0 4 0 1 1 0 1 2 2 1 1 1 0
.................................TAAGGGGATGGGCGTTCC......................................................................................................................................................................................................................................... 18 2 2 1.50 3 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GAAATAAGGAGATCGGCGTTCCA........................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTGGGGTTCGTGGCGTACAGT................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................AGTCGGGCCCAGACTATGAC................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TAAGGAGATGGGTGTTCC......................................................................................................................................................................................................................................... 18 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TAAGGGGATCGGTGTTCC......................................................................................................................................................................................................................................... 18 2 4 1.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TAAGGGGATGGGTGTTCCA........................................................................................................................................................................................................................................ 19 3 8 0.75 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................AATAACGCAATCGACGCTA...................................................................................................................................................................... 19 3 20 0.55 11 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0
................................CTAAGGGGATGGGCGTTC.......................................................................................................................................................................................................................................... 18 3 20 0.50 10 8 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TTTCGGGCCCAGACTATGACGCG.............. 23 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................CGTGGCAGTGGGGTCCGGAC....................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TAAGGGGATGGGTGTTCCAAA...................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TAAGGGGATGGGCGTTCCT........................................................................................................................................................................................................................................ 19 3 7 0.43 3 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................GGTTGGAATTGATGTTGGGC................................................................................................................................................ 20 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GAATGCGGTGGGGGAAGAGA........................................................... 20 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ATAAGGGGATGGGTGTTCC......................................................................................................................................................................................................................................... 19 3 15 0.33 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................GAATAACGCAATCGACGCTA...................................................................................................................................................................... 20 3 13 0.31 4 0 0 0 0 0 0 0 0 0 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
................................CTAAGGGGATGGGCGTTCC......................................................................................................................................................................................................................................... 19 3 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTAAGGGGATCGGTGTTCC......................................................................................................................................................................................................................................... 19 3 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................AATAACGCAATCGACGCTAT..................................................................................................................................................................... 20 3 11 0.18 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ATAACGCAATCGACGCTAT..................................................................................................................................................................... 19 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0
...........................................................................................................................TCGGAGTGATTTGGGGGTT.............................................................................................................................................. 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................AATAAGGGGATGGGTGTTC.......................................................................................................................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TAAGGGGATCGGTGTTCCT........................................................................................................................................................................................................................................ 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................TTACCAAGTGGCACAAGGA..................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................TAAGGGGATGGGAGTTCC......................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TACCAAGTGGCACAAGGA..................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12822:1316107-1316390 - dvi_2466 GTTCCAGAACA-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTATTTAAACAACTTT--TAAGTTC-------TA-TTTGT--TTACTTATTT----------------------------ATTT-----------------------A-GCTGCGATAGCCAAGCTT-----AACTAAAACCCCAAGCACCGCATGTCAC--ACTA-TATAA--------AGAG--ACAA--------------CAATTTACAACTTG----GTCGACTAT------------------ATGTATACCCTTTCGCCCCCCCCTTCTCTGTATTGCAGCACTATCGCACCGTCAGCCCGGGTC-TGATACTGCGCGAGTACGGCCGGCC
droMoj3 scaffold_6540:33933785-33934051 - GTTCCAGAACA-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTG----TTGAAT------TTTA--TT--------A--TAATTTC------CTT--T-TTTTTTT----GCATTTATT-TATT------------TGTTTCT----ATAT----C-----TACA-TAA-GCT--------------TAT----CCAAAAACCCCATGCACCGCACGCTAG--T----GTCTGGCATATAGCCAATAGATCCCAT-------------------ATGT---------AAATATATATAC----TAA--------------------TA------TACCTATATTGCAGCACTATCGCACTGTCAGTCCGGGGC-TGATTCTGCGCGAGTATGGTCGACC
droGri2 scaffold_8919:34-244 - ATAACGAAGCATTCGAATAGTTGAGCGATCACTGTATTATTAT----------------T----TTTGAT------TT-A-TTT--------A--TGATTTA---------------------------------------------------------------------------AACG-AAA-GCT--------------TAA----ACTAAACCCAAATGCACCGCATGCCGT--AATC-AATAA--------GCAATTAATTCCAT-------------------TTG-----------GA-----ATACTAACAT-TCT---GGAT---------------------ATATTCCACAGCACTATCGCACGGTCAGTCCGGGGCGTGATATTGCGCGAATATGGCAGACC
droWil2 scf2_1100000004902:10775881-10776135 - GTTCGAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCCCTAGCCGCAAGGTTTGTTT----T----------------TTT--------A--TAATTTC------TA----------TT----GTCATCATT-TATT------------T----GTTTAAATTTGATCA--TGCTACT-AAA-TCC---------------------------ACAAATCGCACTGCATGTTAA--A----GAA------------------TCCCCTTTGGGGGGATGATTTGCCTGTTTACCTG-CGAAGACTAA-TTT----------------------------TTC-----AATCTGAATTGCAGCATTATCGTACGGTTAGTCCTGGCC-TGATATTACGTGAATATGGCAGACC
dp5 2:5542643-5542882 + GCTCCAGAACA-CCGAGT-ATAAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TT----TT--------A--TGATTTC------CCA-TTTGT--TTTTTT-TTTATCATT-TTGAA------------------------------------TACT-AAA-ATC--------------TTT---AA-------TCACGGCACTGCATGCAAC--CCCC-CATCG--------CAAAAGAAATCC-------------------C--------------TGACTCA---------TAATCTGATGTGT----------------------ACTTTTTCAGCATTACCGCACCGTAAGCCCTGGTC-TGATACTCCGCGAGTATGGCCGACC
droPer2 scaffold_19:1259328-1259568 + GCTCCAGAACA-CCGAGT-ATAAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TT----TT--------A--TGATTTC------CCA-TTTGT--TTTTTTTTTTATCATT-TTGAA------------------------------------TACT-AAA-ATC--------------TTT---AA-------TCACGGCACTGCATGCAAC--CCCC-CATCG--------CAAAAGAAATCC-------------------C--------------TGACTCA---------TAATCTGATGTGT----------------------ACTTTTCCAGCATTACCGCACCGTAAGCCCCGGTC-TGATACTCCGCGAGTATGGCCGACC
droAna3 scaffold_13250:53527-53796 - GATCCAGAACA-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTTTTATTATGAT------TTAA--TT--------A--TGATTTC------CCCAATTG-TTTCT----GACATCGTT-TCGCTATTCCGCCGTATATTTCT----TGAT----ATACACG-CCAAAA-ACTGC-------------AA---TACTTAACCACAAAGCACTTA--GCACA---------A-----------------------------------------ATATTTG----GTAGAAA------ATCTCATTAAATT---TAAT---------------------AATTATTTCAGCATTATCGTACTGTGAGTCCGGGTC-TGATACTCCGAGAGTACGGACGACC
droBip1 scf7180000396413:609005-609273 - GATCCAGAACA-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTCTAATTATGAT------TTTT-ATT--------A--TGAGTTC------CCCAATTA-TTTCT----GAAATCGTT-TCGCCTTTTCGCCGTATATTTCT----AAAT----ATACACG-CC-AAA----------------------------------------ACTGCA----AT--ACTT-AATCA--------CAAA--CTAT--------------TATTTAACTATTTA----ATAGAAAATTAATATC----AAA--------------------TCT-----TATACTTCTTTCAGCACTATCGTACTGTGAGCCCGGGTC-TGATACTCCGAGAGTACGGACGACC
droKik1 scf7180000302461:169979-170223 + GTTCCAGAACA-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTTTCTTTATGAT------TT----TT--------A--TGATTTC------CCA-TA-AT-TTAT----GCCATCGTTTTTGAAT------------------------T----G-----TACT-AAA-AAA--------------GAAA--CCCCAAAACAAAAAACACTGCATGTAGAGG----AGATGT--------AA------------------------------------------CCTGAACTGCGGAC----TAATGA---GATT----------------------ACCTTTACAGCACTATCGGACGGTCAGTCCCGGTC-TGATACTCCGCGAGTATGGAAGACC
droFic1 scf7180000454104:1325554-1325794 + GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TT-CCTTT--------A--TGATTTC------CCC-TC-AT-TTCT----GCCATCGTT-TTGATT-----------------------------G-----TACT-AAAAACT--------------CCA---AAGAAAAACACACGGCACTGCATGTTAA--T----GAA-------------------------------G---------ATGTT----------TGAGTTGGGCAC----TCA-------------------CTCC-----GCCTTTATTTGCAGCACTATCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGACGACC
droEle1 scf7180000491047:120667-120917 + GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTACTTCT-------ACTTGATTCC------CCT-TC-ATTTTTT----GCCATCGTT-TTGAAT-----------------------AT----G-----TACT-AAA-CCT--------------CCA---AAGAAAAACACACGGCACTGCATGTAGA--AC----ACTT-----------------------------------------ATTT---------TGAGTTAAGAACTAACTAACTA---GATT---------------------GTTTGTTACAGCACTATCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGCCGACC
droRho1 scf7180000777865:298365-298603 - GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATTAT------TT---TTT--------C--TGATTTC------CCT-TC-ATTTTCT----GCCATCGTT-TTGAAT-----------------------------G-----TACT-AAA-CCT--------------CCA---AAGAAAAACACACGGCACTGCATGTTGA--AT----TTTT--------------------------------------------------AATCAGAGTTTGGCAC----TAATGT---GATT---------------------GTTCTTTGCAGCACTATCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGGCGACC
droBia1 scf7180000302402:3001876-3002122 - GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TT---TTT--------A--TGATTTT------CCC-TC-ATTTTCT----GCCATCGTT-TTGAAT-----------------------------A--TACTACT-AAA-GCTGA-------------GA---AAGAAAAACACACGGCACTGCATGTACTTA-GC-AAATTT--------GT------------------------------------------GGTTGCTTGAAAGC----TAATGA---GACT---------------------GGTTTTTGCAGCACTATCGAACGGTGAGTCCGGGCC-TGATACTCCGCGAGTACGGGCGACC
droTak1 scf7180000415653:563728-563975 - GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTCTTTT--------A--TGATTTC------CCT-TC-ATTTTCT----GCCATCGTT-TTGAAT-----------------------------A--AATTACT-AAA-ACT--------------CGAACTAAAAAAAACACACGGCACTGCATGTACT--AC----GTTT--------AT--------------GG---------CTAGC-------------------TG----CTTACTAATGA---GATT---------------------AACTTTTACAGCACTATCGCACGGTGAGTCCTGGCC-TGATACTGCGGGAGTACGGGCGACC
droEug1 scf7180000407136:170371-170616 + GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----AATGAT------TT-ACTTT--------A--TGATTTC------CCT-TC-ATTTTCT----GCCATCGTT-TTGAAA-----------------------------A-----TACT-AAG-ACT--------------CCA---AAGAAAAACACACGGCACTGCATGTAAA--AC----CATT------------------------GA------------------------CAAGCAAATT---AACTAACTAACCA---GGAA-------------------ATATTTCTTACAGCACTATCGGACGGTCAGTCCGGGTC-TGATACTCCGAGAATACGGGCGACC
dm3 chr3R:5515548-5515793 - GCTCCAGAACT-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATAAT------TTTACTTT--------A--TGATTTC------CCC-TC-ATTTTCT----GCCATCGTTTTTGAAA-----------------------------A-----TACT-AAA-ACC--------------GAA---AAGAAAAACACACGGCACTGCATGTATTTA----AACTTT--------GA----------------------------------------AATGAGAGCCCAGGAC----TAA--------------------TCC-----CACTTAATTTGCAGCACTACCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGACGACC
droSim2 3r:15510579-15510824 + dsi_9902 GCTCCAGAACT-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTACTTT--------A--TGATTTC------CCC-TC-ATTTTCT----GCCATCGTTTTTGAAA-----------------------------A-----TACT-AAA-ACC--------------CAA---AAGAAAAACACACGGCACTGCATGTATTTG----AGCCTT--------GA----------------------------------------AATGAGAGCGCAGGAC----TAA--------------------TCC-----CACTTAATTTACAGCACTACCGAACGGTCAGTCCTGGTC-TGATACTCCGGGAGTACGGGCGACC
droSec2 scaffold_0:16381172-16381417 + GCTCCAGAACT-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTACTTT--------A--TGATTTC------CCC-TC-ATTTTCT----GCCATCGTTTTTGAAA-----------------------------A-----TACT-AAA-ACC--------------AAA---AAGAAAAACACACGGCACTGCATGTATTAAA----GCCTT--------GA----------------------------------------AATGAGAGCCCAGGAC----TAA--------------------TCC-----CACTTAATTTGCAGCACTACCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGGCGACC
droYak3 3R:9569800-9570044 - GCTCCAGAACA-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGATTTTTTATTTACTTT--------A--TGATTTCATATGCCCT-CC-AT-----------------TTTTGAAA-----------------------------A-----TACT-AAA-ACC--------------CAA---AAGTAAAACACACGGCACTGCATGTACATC----TCATTT--------CA----------------------------------------AGAGAGGCCCAAGAAC----TAA--------------------TCC-----GACTTGTCTTGCAGCACTATCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGGCGACC
droEre2 scaffold_4770:16081588-16081838 + GCTCCAGAACT-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTACTTT--------A--TGATTTCATATGCCCT-TC-ATTTTCT----GCCATCGTTTTTGAAA-----------------------------A-----TACTTAAA-ACC--------------CAA---AAGTAAAA--CACGGCACTGCATGTACATA----AGATTT--------CA----------------------------------------AATGAGAGCCAAGGAC----TAA--------------------TTC-----GACTTGTCTTACAGCACTACCGAACGGCGAGTCCGGGTT-TGATACTCCGGGAGTACGGGCGACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTTCCAGAACA-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTATTTAAACAACTTT--TAAGTTC-------TA-TTTGT--TTACTTATTT----------------------------ATTT-----------------------A-GCTGCGATAGCCAAGCTT-----AACTAAAACCCCAAGCACCGCATGTCAC--ACTA-TATAA--------AGAG--ACAA--------------CAATTTACAACTTG----GTCGACTAT------------------ATGTATACCCTTTCGCCCCCCCCTTCTCTGTATTGCAGCACTATCGCACCGTCAGCCCGGGTC-TGATACTGCGCGAGTACGGCCGGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................TTGCAGCACTATCGCACCGTCAG..................................2313.003000000000000000000003000000000000000000000000000000000000000000
........ACA-CCGAGT-TTTAATGGTT..................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
................GT-TTTAATGGTTCACTTTATTCCTC.....................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
..........................GTTCACTTTATTCCTCTAGCCGCAAGCA.........................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................CACCGTCAGCCCGGGTC-T........................1811.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................ATCGCACCGTCAGCCCGGGTC-TG.......................2311.001010000000000000000000000000000000000000000000000000000000000000
............................................GCCGCAAGGTTTGTTT----TAT............................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................CTGTATTGCAGCACTATCGCACCGTCA...................................2711.001000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGCCCGGGTC-TGATACTGCGCG.............2211.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................TATCGCACCGTCAGCCCGGGTC-TGAT.....................2611.001000000000000000000000000000010000000000000000000000000000000000
................................TTTATTCCTCTAGCCGCAAGGTTTGTT....................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACTATCGCACCGTCAGCCCGGGT...........................2311.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TATCGCACCGTCAGCCCGGGTC-TGA......................2511.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCAGCCCGGGTC-TGATACTGCGCGAG...........2611.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGCGCGAGTACGGCT....1570.292000000000000000000000000000000000000000000000000000000000000002
droMoj3
GTTCCAGAACA-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTG----TTGAAT------TTTA--TT--------A--TAATTTC------CTT--T-TTTTTTT----GCATTTATT-TATT------------TGTTTCT----ATAT----C-----TACA-TAA-GCT--------------TAT----CCAAAAACCCCATGCACCGCACGCTAG--T----GTCTGGCATATAGCCAATAGATCCCAT-------------------ATGT---------AAATATATATAC----TAA--------------------TA------TACCTATATTGCAGCACTATCGCACTGTCAGTCCGGGGC-TGATTCTGCGCGAGTATGGTCGACCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................CTATATTGCAGCACTATCGCA.........................................2111.001000100
droGri2
ATAACGAAGCATTCGAATAGTTGAGCGATCACTGTATTATTAT----------------T----TTTGAT------TT-A-TTT--------A--TGATTTA---------------------------------------------------------------------------AACG-AAA-GCT--------------TAA----ACTAAACCCAAATGCACCGCATGCCGT--AATC-AATAA--------GCAATTAATTCCAT-------------------TTG-----------GA-----ATACTAACAT-TCT---GGAT---------------------ATATTCCACAGCACTATCGCACGGTCAGTCCGGGGCGTGATATTGCGCGAATATGGCAGACCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTTCGAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCCCTAGCCGCAAGGTTTGTTT----T----------------TTT--------A--TAATTTC------TA----------TT----GTCATCATT-TATT------------T----GTTTAAATTTGATCA--TGCTACT-AAA-TCC---------------------------ACAAATCGCACTGCATGTTAA--A----GAA------------------TCCCCTTTGGGGGGATGATTTGCCTGTTTACCTG-CGAAGACTAA-TTT----------------------------TTC-----AATCTGAATTGCAGCATTATCGTACGGTTAGTCCTGGCC-TGATATTACGTGAATATGGCAGACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................TTATCGTACGGTTAGTCCTGGCC-T........................2412.00211000
.............................................................................................................................................................................................................................................................................................................................................................................ATTATCGTACGGTTAGTCCTGGCC-T........................2512.00220000
...CGAGAACT-CCGAGT-TTTAATGG....................................................................................................................................................................................................................................................................................................................................................................................................2212.00220000
....................TTAATGGTTCACTTTATTCCCCTAGC.................................................................................................................................................................................................................................................................................................................................................................................2612.00202000
.........................GGTTCACTTTATTCCCCTAGC.................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................TAGTCCTGGCC-TGATATTACGT..............2211.00100100
................................................................................................................................................................................................................................................................................................................................................................................ATCGTACGGTTAGTCCTGGC...........................2011.00110000
............................TCACTTTATTCCCCTAGCCGCA.............................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..............................................................................................................................................................................................................................................................................................................................................................................TTATCGTACGGTTAGTCCTGGCC-.........................2311.00110000
..........................................................................................................................................................................................................................................................................................................................................................................AGCATTATCGTACGGTTAG..................................1911.00101000
....GAGAACT-CCGAGT-TTTAATGGTT..................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.......................................................................................................................................................................................................................................................................................ATGATTTGCCTGTTTACCTG-CGAA...............................................................................................................2411.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTACGTGAATATGGCAGAC.2011.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................AGTCCTGGCC-TGATATTACGT..............2111.00100010
............................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGCC-TGATATTACGT..............2011.00100100
........................................................................................................................................................................................................................................................................................................................................................................GCAGCATTATCGTACGGT.....................................1811.00101000
..........................................................................................................................................................................................................................................................................................................................................................................AGCATTATCGTACGGTTAGTCCT..............................2311.00110000
...................................................................................................................................................................................................................................................................................................................................................................................GTACGGTTAGTCCTGGCC-T........................1911.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................C-TGATATTACGTGAATATGGCAGAC.2511.00100010
............................................................................................................................................................................................................................................................................................................................................................................CATTATCGTACGGTTAGTCCTGGCC-.........................2511.00100010
dp5
GCTCCAGAACA-CCGAGT-ATAAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TT----TT--------A--TGATTTC------CCA-TTTGT--TTTTTT-TTTATCATT-TTGAA------------------------------------TACT-AAA-ATC--------------TTT---AA-------TCACGGCACTGCATGCAAC--CCCC-CATCG--------CAAAAGAAATCC-------------------C--------------TGACTCA---------TAATCTGATGTGT----------------------ACTTTTTCAGCATTACCGCACCGTAAGCCCTGGTC-TGATACTCCGCGAGTATGGCCGACCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................ATAAATGGTTCACTTTATTCC.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................GCACCGTAAGCCCTGGTC-TG.......................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................CGCACCGTAAGCCCTGGTC-TGAT.....................2311.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GATACTCCGCGAGTATGGCC....2011.0010010000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGCCCTGGTC-TGATACTCCGCGAGT..........2511.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................TTACCGCACCGTAAGCCCTGG............................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................CGTAAGCCCTGGTC-TGATAC...................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................ACCGCACCGTAAGCCCTG.............................1811.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................ATTACCGCACCGTAAGCCCTGGT...........................2311.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................TAAGCCCTGGTC-TGATACTCCGC..............2311.0010100000000
.............................CACTTTATTCCTCTAGCCGCAAGC..........................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
droPer2
GCTCCAGAACA-CCGAGT-ATAAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TT----TT--------A--TGATTTC------CCA-TTTGT--TTTTTTTTTTATCATT-TTGAA------------------------------------TACT-AAA-ATC--------------TTT---AA-------TCACGGCACTGCATGCAAC--CCCC-CATCG--------CAAAAGAAATCC-------------------C--------------TGACTCA---------TAATCTGATGTGT----------------------ACTTTTCCAGCATTACCGCACCGTAAGCCCCGGTC-TGATACTCCGCGAGTATGGCCGACCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................AATGGTTCACTTTATTCCTCT....................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
...............................................................................................................................................................................................................................................................................................................................................................................TACCGCACCGTAAGCCCCGGTC-TG.......................2411.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................CCCGGTC-TGATACTCCGC..............1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................GTAAGCCCCGGTC-TGATACTCCGCGAGT..........2811.001100000
droAna3
GATCCAGAACA-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTTTTATTATGAT------TTAA--TT--------A--TGATTTC------CCCAATTG-TTTCT----GACATCGTT-TCGCTATTCCGCCGTATATTTCT----TGAT----ATACACG-CCAAAA-ACTGC-------------AA---TACTTAACCACAAAGCACTTA--GCACA---------A-----------------------------------------ATATTTG----GTAGAAA------ATCTCATTAAATT---TAAT---------------------AATTATTTCAGCATTATCGTACTGTGAGTCCGGGTC-TGATACTCCGAGAGTACGGACGACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................GTACTGTGAGTCCGGGTC-TGATACT..................2512.002020000
.................C-TTTAATGGTTCACTTTATTCCTCC....................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
................................................................................................................................................................................................................................................................................................................................................................................ATCGTACTGTGAGTCCGGGT...........................2011.001100000
....CAGAACA-CCGAGC-TTTAATGGTT..................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...............................................................................A--TT--------A--TGATTTC------CCCAATTG-T.........................................................................................................................................................................................................................................................................................................2011.001000010
..............................................................................................................................................................................................................................................................................................................................................................................TTATCGTACTGTGAGTCCG..............................1911.001000001
...................................................................................................................................................................................................................................................................................................................................................................................GTACTGTGAGTCCGGGTC-TGATA....................2311.001000010
droBip1
GATCCAGAACA-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTCTAATTATGAT------TTTT-ATT--------A--TGAGTTC------CCCAATTA-TTTCT----GAAATCGTT-TCGCCTTTTCGCCGTATATTTCT----AAAT----ATACACG-CC-AAA----------------------------------------ACTGCA----AT--ACTT-AATCA--------CAAA--CTAT--------------TATTTAACTATTTA----ATAGAAAATTAATATC----AAA--------------------TCT-----TATACTTCTTTCAGCACTATCGTACTGTGAGCCCGGGTC-TGATACTCCGAGAGTACGGACGACCSizeHit CountTotal NormTotal
No Reads
droKik1
GTTCCAGAACA-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTTTCTTTATGAT------TT----TT--------A--TGATTTC------CCA-TA-AT-TTAT----GCCATCGTTTTTGAAT------------------------T----G-----TACT-AAA-AAA--------------GAAA--CCCCAAAACAAAAAACACTGCATGTAGAGG----AGATGT--------AA------------------------------------------CCTGAACTGCGGAC----TAATGA---GATT----------------------ACCTTTACAGCACTATCGGACGGTCAGTCCCGGTC-TGATACTCCGCGAGTATGGAAGACCSizeHit CountTotal NormTotal
No Reads
droFic1
GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TT-CCTTT--------A--TGATTTC------CCC-TC-AT-TTCT----GCCATCGTT-TTGATT-----------------------------G-----TACT-AAAAACT--------------CCA---AAGAAAAACACACGGCACTGCATGTTAA--T----GAA-------------------------------G---------ATGTT----------TGAGTTGGGCAC----TCA-------------------CTCC-----GCCTTTATTTGCAGCACTATCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGACGACCSizeHit CountTotal NormTotal
No Reads
droEle1
GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTACTTCT-------ACTTGATTCC------CCT-TC-ATTTTTT----GCCATCGTT-TTGAAT-----------------------AT----G-----TACT-AAA-CCT--------------CCA---AAGAAAAACACACGGCACTGCATGTAGA--AC----ACTT-----------------------------------------ATTT---------TGAGTTAAGAACTAACTAACTA---GATT---------------------GTTTGTTACAGCACTATCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGCCGACCSizeHit CountTotal NormTotal
No Reads
droRho1
GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATTAT------TT---TTT--------C--TGATTTC------CCT-TC-ATTTTCT----GCCATCGTT-TTGAAT-----------------------------G-----TACT-AAA-CCT--------------CCA---AAGAAAAACACACGGCACTGCATGTTGA--AT----TTTT--------------------------------------------------AATCAGAGTTTGGCAC----TAATGT---GATT---------------------GTTCTTTGCAGCACTATCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGGCGACCSizeHit CountTotal NormTotal
No Reads
droBia1
GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TT---TTT--------A--TGATTTT------CCC-TC-ATTTTCT----GCCATCGTT-TTGAAT-----------------------------A--TACTACT-AAA-GCTGA-------------GA---AAGAAAAACACACGGCACTGCATGTACTTA-GC-AAATTT--------GT------------------------------------------GGTTGCTTGAAAGC----TAATGA---GACT---------------------GGTTTTTGCAGCACTATCGAACGGTGAGTCCGGGCC-TGATACTCCGCGAGTACGGGCGACCSizeHit CountTotal NormTotal
No Reads
droTak1
GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTCTTTT--------A--TGATTTC------CCT-TC-ATTTTCT----GCCATCGTT-TTGAAT-----------------------------A--AATTACT-AAA-ACT--------------CGAACTAAAAAAAACACACGGCACTGCATGTACT--AC----GTTT--------AT--------------GG---------CTAGC-------------------TG----CTTACTAATGA---GATT---------------------AACTTTTACAGCACTATCGCACGGTGAGTCCTGGCC-TGATACTGCGGGAGTACGGGCGACCSizeHit CountTotal NormTotal
No Reads
droEug1
GCTCCAGAACT-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----AATGAT------TT-ACTTT--------A--TGATTTC------CCT-TC-ATTTTCT----GCCATCGTT-TTGAAA-----------------------------A-----TACT-AAG-ACT--------------CCA---AAGAAAAACACACGGCACTGCATGTAAA--AC----CATT------------------------GA------------------------CAAGCAAATT---AACTAACTAACCA---GGAA-------------------ATATTTCTTACAGCACTATCGGACGGTCAGTCCGGGTC-TGATACTCCGAGAATACGGGCGACCSizeHit CountTotal NormTotal
No Reads
dm3
GCTCCAGAACT-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATAAT------TTTACTTT--------A--TGATTTC------CCC-TC-ATTTTCT----GCCATCGTTTTTGAAA-----------------------------A-----TACT-AAA-ACC--------------GAA---AAGAAAAACACACGGCACTGCATGTATTTA----AACTTT--------GA----------------------------------------AATGAGAGCCCAGGAC----TAA--------------------TCC-----CACTTAATTTGCAGCACTACCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGACGACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..TCCAGAACT-CCGAGC-TTTAATGGT...................................................................................................................................................................................................................................................................................................................................................................................................2423.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACTACCGAACGGTGAGTCCGGGT...........................2322.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000
.....................TAATGGTTCACTTTATTCCTCTAGCCGC..............................................................................................................................................................................................................................................................................................................................................................................2821.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GTC-TGATACTCCGGGAGTAC........2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGGGAGTACGGACG...1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACTACCGAACGGTGAGTCC...............................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................GGTC-TGATACTCCGGGAGT..........1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TCCGGGAGTACGGACGAC.1821.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACTACCGAACGGTGAGTCCGGG............................2221.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CAGAACT-CCGAGC-TTTAATGT....................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GAGTCCGGGTC-TGATACTCCGGGAGT..........2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CCCAGGAC----TAA--------------------TCC-----CACTTAATTTGCAG...................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........T-CCGAGC-TTTAATGGTTCAC...............................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GTTTGTTT----TATAAT------TTTACTTT--------A--TGAT............................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CGGTGAGTCCGGGTC-TGAT.....................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GGTTCACTTTATTCCTCTAGCCGCAAGC..........................................................................................................................................................................................................................................................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................C-TGATACTCCGGGAGTA.........1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGATACTCCGGGAGTACG.......1820.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GCTCCAGAACT-CCGAGC-TTTAATGGTT..................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................GCCCAGGAC----TAA--------------------TCC-----CACTTAATTTGCAG...................................................2920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CTACCGAACGGTGAGTCCGGGTC-TG.......................2520.5010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................GCACTACCGAACGGTGAGTC................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CGGTGAGTCCGGGTC-TGATACTCCGG..............2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACTACCGAACGGTGAGTCCGGGTC-TGAT.....................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ACTCCGGGAGTACGGACGACC2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................ACCGAACGGTGAGTCCGGGT...........................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TTT--------GA----------------------------------------AATGAGAGCCCAGG......................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GCTCCAGAACT-CCGAGC-TTTAATG.....................................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................ACTACCGAACGGTGAGTCCGG.............................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CTACCGAACGGTGAGTCCGGGTC-TGA......................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................AACTTT--------GA----------------------------------------AATGAGAGT...........................................................................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TTCACTTTATTCCTCTAGCCGCAAGCA.........................................................................................................................................................................................................................................................................................................................................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TTATTCCTCTAGCCGCAAGGTTT.......................................................................................................................................................................................................................................................................................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TTATTCCTCTAGCCGCAAGGT.........................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................GAACGGTGAGTCCGGGTC-.........................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GATACTCCGGGAGTACGGAC....2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................C-TGATACTCCGGGAGTACGGAC....2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CGAACGGTGAGTCCGGGTC-TG.......................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................CACTACCGAACGGTGAGTCCGGGT...........................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GTC-TGATACTCCGGGAGTACG.......2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................A--TGATTTC------CCC-TC-ATTTTCT----GCCATCGTT........................................................................................................................................................................................................................................................................................2920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CCAGGAC----TAA--------------------TCC-----CACTTAATTTGCAG...................................................2720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...................TTTAATGGTTCACTTTATTCCTCT....................................................................................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CCAGGAC----TAA--------------------TCC-----CACTTAATTTGC.....................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................ATTTA----AACTTT--------GA----------------------------------------AATGAGAGCCCAGGA.....................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CTACCGAACGGTGAGTCCGG.............................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CT-CCGAGC-TTTAATGGTT..................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................C-TGATACTCCGGGAGTACGGACG...2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTTA----AACTTT--------GA----------------------------------------AATGT...............................................................................................................1790.3330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCTCCAGAACT-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTACTTT--------A--TGATTTC------CCC-TC-ATTTTCT----GCCATCGTTTTTGAAA-----------------------------A-----TACT-AAA-ACC--------------CAA---AAGAAAAACACACGGCACTGCATGTATTTG----AGCCTT--------GA----------------------------------------AATGAGAGCGCAGGAC----TAA--------------------TCC-----CACTTAATTTACAGCACTACCGAACGGTCAGTCCTGGTC-TGATACTCCGGGAGTACGGGCGACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...CCAGAACT-CCGAGC-TTTA........................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
.CTCCAGAACT-CCGAGC-TT..........................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.................C-TTTAATGGTTCACTTTATTCCTCTAGCC................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000000000
....CAGAACT-CCGAGC-TTTAATGGT...................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TACCGAACGGTCAGTCCT..............................1811.00100001000000000000
....................................................................................................................................................................................................................................................GCCTT--------GA----------------------------------------AATGAGAGCGCAGGAC----TAA--------------------T........................................................................2711.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CAGTCCTGGTC-TGATACTCCGG..............2211.00100100000000000000
.CTCCAGAACT-CCGAGC-TTTAAT......................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GTCAGTCCTGGTC-TGATACTCCGGGA............2611.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................ATACTCCGGGAGTACGGG.....1811.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................ATACTCCGGGAGTACGGGC....1911.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................GTCCTGGTC-TGATACTCC................1811.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CTACCGAACGGTCAGTCCTGGTC-T........................2411.00100010000000000000
droSec2
GCTCCAGAACT-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTACTTT--------A--TGATTTC------CCC-TC-ATTTTCT----GCCATCGTTTTTGAAA-----------------------------A-----TACT-AAA-ACC--------------AAA---AAGAAAAACACACGGCACTGCATGTATTAAA----GCCTT--------GA----------------------------------------AATGAGAGCCCAGGAC----TAA--------------------TCC-----CACTTAATTTGCAGCACTACCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGGCGACCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................C-TGATACTCCGGGAGTACGGGC....2212.0020020
.......AACT-CCGAGC-TTTAATGG....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
............................................................................................................................................................................................................................................................................................................................................................................CACTACCGAACGGTGAGTCCGG.............................2211.0010010
.......AACT-CCGAGC-TTTAATGGT...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droYak3
GCTCCAGAACA-CCGAGT-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGATTTTTTATTTACTTT--------A--TGATTTCATATGCCCT-CC-AT-----------------TTTTGAAA-----------------------------A-----TACT-AAA-ACC--------------CAA---AAGTAAAACACACGGCACTGCATGTACATC----TCATTT--------CA----------------------------------------AGAGAGGCCCAAGAAC----TAA--------------------TCC-----GACTTGTCTTGCAGCACTATCGAACGGTGAGTCCGGGTC-TGATACTCCGGGAGTACGGGCGACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................GATACTCCGGGAGTACGGGC....2012.00200000020000
....................................................................................................................................................................................................................................................................................................................................................................................................C-TGATACTCCGGGAGTACGGG.....2111.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................ATACTCCGGGAGTACGGGC....1911.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GGTGAGTCCGGGTC-TGATACTCCGGGA............2711.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................GCACTATCGAACGGTGAGTCCGG.............................2311.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GAGTCCGGGTC-TGATACTCCG...............2111.00100100000000
..........................GTTCACTTTATTCCTCTAGCCGCAAG...........................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................GCAGCACTATCGAACGGTGAGTCCGGGT...........................2811.00100000010000
.........................GGTTCACTTTATTCCTCTAG..................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEre2
GCTCCAGAACT-CCGAGC-TTTAATGGTTCACTTTATTCCTCTAGCCGCAAGGTTTGTTT----TATGAT------TTTACTTT--------A--TGATTTCATATGCCCT-TC-ATTTTCT----GCCATCGTTTTTGAAA-----------------------------A-----TACTTAAA-ACC--------------CAA---AAGTAAAA--CACGGCACTGCATGTACATA----AGATTT--------CA----------------------------------------AATGAGAGCCAAGGAC----TAA--------------------TTC-----GACTTGTCTTACAGCACTACCGAACGGCGAGTCCGGGTT-TGATACTCCGGGAGTACGGGCGACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................GCACTACCGAACGGCGAGTC................................2011.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................GATACTCCGGGAGTACGGGC....2011.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................GAGTCCGGGTT-TGATACTCCGGGA............2411.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................T-TGATACTCCGGGAGTACGGGC....2211.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................ACTACCGAACGGCGAGTCCG..............................2011.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................ATACTCCGGGAGTACGGGC....1911.0010000010
..................................................................................................................................................................................................................................................................................................................GCCAAGGAC----TAA--------------------TTC-----GACTTGTCTTACAG...................................................2911.0011000000
.................................................................................................................................................................................................................................................................CA----------------------------------------AATGAGAGCCAAGGAC----TAA--------------------TTC-----.................................................................2411.0010000100
.................................TTATTCCTCTAGCCGCAAGCA.........................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................GTT-TGATACTCCGGGAGTACGGGC....2411.0010000100

Generated: 05/17/2015 at 05:00 AM