ID:

dvi_2439

 Coordinate:

scaffold_12822:1241773-1241923 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.2 -22.1 -21.9

Flybase annnotation

CDS [Dvir\GJ14441-cds]; exon [dvir_GLEANR_14391:3]; intron [Dvir\GJ14441-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron+
Homo6DNAhAT-Pegasus+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGCATGTTAAGAGTGGTATTACGGAACGCTCATTGTTGTACTTACACAGGTGGGATTTGGAATTGAAATGCTACCCATTGAAAATGGTGAAAAGGGTAGATTGATTTCGTGCAAATATATGCAGCAGGCGGAACGAGACATCTCCGACCCCGTAAAGTATATTTTTGATCGACGCGATGAGCTGATGAGATGGTTTATCTAGCTAAGGCCTAGTCCTTTGGCATTTAGACTGTCATATTCAGACCCTGTC
********************************************************************************************...(((..((((...(((..((((.((((((.((.((((((..((....)))))).))..))...)))))).))))..)))..))))..)))..........********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060658
140_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060679
140x9_testes_total
 V116
male body		 SRR060667
160_females_carcasses_total
 SRR060655
9x160_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060672
9x160_females_carcasses_total
 V053
head
 M028
head
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060683
160_testes_total
 SRR060674
9x140_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060680
 9xArg_testes_total
 M027
male body		 SRR060669
160x9_females_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 SRR060656
9x160_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060670
9_testes_total
 SRR060689
160x9_testes_total
 GSM1528803
follicle cells		 SRR060686
Argx9_0-2h_embryos_total
............................................................................................AAGGGTAGATTGATTTCGTGC.......................................................................................................................................... 21 0 1 4.00 4 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATTGAAAATGGTGAAAAGGGT......................................................................................................................................................... 21 0 1 4.00 4 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CGCGATGAGCTGATGAGATGG......................................................... 21 0 1 3.00 3 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....ATGTTAAGAGTGGTATTACGG.................................................................................................................................................................................................................................. 21 0 1 3.00 3 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GATGAGCTGATGAGATGGTTT...................................................... 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AGTGGTATTACGGAACGCTC........................................................................................................................................................................................................................... 20 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGATCGACGCGATGAGCTGAT................................................................ 21 0 1 3.00 3 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GTGGTATTACGGAACGCTCAT......................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TGGTATTACGGAACGCTCATT........................................................................................................................................................................................................................ 21 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TTGGGAGTGGTATTACGGAAC............................................................................................................................................................................................................................... 21 2 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CTGATGAGATGGTTTATCTAG................................................ 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AGTATATTTTTGATCGACGCG.......................................................................... 21 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AGAGGGGTAGATTGATTTCGT............................................................................................................................................ 21 2 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTGAAAATGGTGAAAAGGGTA........................................................................................................................................................ 21 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................TTTGATCGACGCGATGAGCT................................................................... 20 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................ATGCAGCAGGCGGAACGAGAC............................................................................................................... 21 0 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AGTGGTATTACGGAACGCTCA.......................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TTAAGAGTGGTATTACGGAAC............................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGACTGTCATGTTCAGACCCT... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TGGTGAAAAGGGTAGATTG................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GTGAAGAGTGGTATTACG................................................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TAAGAGTGGTATTACGGAAC............................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AGTCCTTTGGCATTTAGACTG.................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGGGCGGAACGAGACATCTCCG........................................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GATTTCGTGCAAATATATGCA............................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTTTTGATCGACGCGATGAGC.................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAGACTGTCATGTACAGACCCT... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACGCGATGAGCTGATGAGAT........................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ACTGTCATATTCAGACCCTGT. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GTTAGGAGTGGTATTACGGAG................................................................................................................................................................................................................................ 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TTACGGAACGCTCATTGTTGTC.................................................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTGTACTTACACAGGTGGGAT.................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TAGATTGATTTCGTGCAAATA..................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................GATTTGGAATTGAAATGCTACCCATT........................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................AAGTATATTTTTGATCGACGC........................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................ACGCGATGGGCTGATGAGATG.......................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGTATATGCAGCAGGCGGAACG................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GTAGATTGATTTCGTGCAAAT...................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................ACAGGTGGGATTTGGAATTG......................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CTTACACAGGTGGGATTTGGAT............................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATTGAAATGCTACCCATTGAG........................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AATGGTGAAAAGGGTAGATTG................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTCGTGCAAATATATGCAGC............................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGGATTTGGAATTGAAATGC................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TGTACTTGCACAGGTGGGATT................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TGAGCTGATGAGATGGTTTAT.................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................ATTTGGAATTGAAGTGCTACC............................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................ATTTGGAATTGAAATGCTACC............................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTGGCATTTAGACTGTC................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TTTGATCGACGCGATGAGCTGAGA............................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ATTTTTGATCGACGCGATGAG..................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TGTTAAGAGTGGTATTACGGA................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTGAAATGCTACCCATTGAGA....................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TATGCAGCAGGCGGAACGAGA................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GCAAGTATATGCAGCAGGCGG....................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATGGGCTGATGAGATGGTTTGT.................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TTGAAAATGGTGAAAGGGGTG........................................................................................................................................................ 21 2 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ATTGAAATGCTGCCCATTGAGA....................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GGGCGGAACGAGACATCTCCG........................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................ATTACGGAACGCTCATTGTT..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................CTTACACAGGTGGGATTTGGA............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TTACACGGGTGGGATTTGG.............................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATTTAGACTGTCATATTCAGA....... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTGGAATTGAAGTGCTACCCA............................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGATACTGTCATATTAAGACCCT... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TAAGAGTGGTATTACGGAACG.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTGATCGACGCGATGAGCTGA................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AGTGGTATTGCGGAGCGCTCA.......................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TCATTGTTGTACTTACACAGAT....................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TATATTTTTGATCGACGCGAT........................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTTTGATCGACGCGATGAG..................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTTTATCTAGCTAGGGCCTG...................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AAAATGGTGAAAGGGGTAGATT.................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGGATTTGGAATTGAAGTGC................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TAGACTGTCATATTCAGACCC.... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ACGCTCATTGTTGTACTTACACAG......................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CATTGAAAATGGTGAAAAGGG.......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GCATGTTAAGAGTGGTATTACGGA................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGTTGTACTTACACAGGTGG..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GAGTGGTATTACGGAACGCT............................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGTTGTACTTACACAGGTGGGAT.................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TTTGATCGACGCGATGAGCTGT................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GTTAAGAGTGGTATTACG................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTTTGATCGACGCGATGAGCT................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GCTCATTGTTGTACTTACACAGA........................................................................................................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............AGTGGTATTACGGAACGCT............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TGATCGACGCGATGAGCTGA................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATTGAAAATGGTGAAACGG........................................................................................................................................................... 19 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TGGTATTGCGGAACGCTC........................................................................................................................................................................................................................... 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGTGCAGCAGGCGGAACGAT................................................................................................................. 20 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AGCGAGACATCTCCGACCCCG.................................................................................................. 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ACGAGACATCTCCGACCCCGT................................................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATTGAAAATGGTGAAAGGGGT......................................................................................................................................................... 21 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........CGAGAGTGGTATGACGGAA................................................................................................................................................................................................................................ 19 3 5 0.40 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................TGCGGAGCGCTCATTGTTGTG.................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................ATGAGATGGTTTATATAGCTT............................................. 21 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CTTGAACATGGTGAAAAG............................................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................GCAGGCGGAGGGAGCCATCTC.......................................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TAAGACTGTCAGATTAAGAC...... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ATAGTATATTTTTGATC................................................................................ 17 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................CAGTGAAAATGGTGAAAA............................................................................................................................................................. 18 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................CAGGCGGAAAAAGACATATC.......................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GTCGTACAATTCTCACCATAATGCCTTGCGAGTAACAACATGAATGTGTCCACCCTAAACCTTAACTTTACGATGGGTAACTTTTACCACTTTTCCCATCTAACTAAAGCACGTTTATATACGTCGTCCGCCTTGCTCTGTAGAGGCTGGGGCATTTCATATAAAAACTAGCTGCGCTACTCGACTACTCTACCAAATAGATCGATTCCGGATCAGGAAACCGTAAATCTGACAGTATAAGTCTGGGACAG
*********************************************************...(((..((((...(((..((((.((((((.((.((((((..((....)))))).))..))...)))))).))))..)))..))))..)))..........******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060679
140x9_testes_total
 M027
male body		 SRR060683
160_testes_total
 M028
head
 SRR060676
9xArg_ovaries_total
 SRR060655
9x160_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060658
140_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060689
160x9_testes_total
 SRR060657
140_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
.............................................................................................................................................................................GCGCTACTCGACTACTCTAC.......................................................... 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CGCTACTCGACTACTCTACCA........................................................ 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................TGCCTTGCGAGTAACAACATG................................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CCTGCTCTGTAGAGGCTGGGGC.................................................................................................. 22 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGTCCGCCTTGCTCTGTAGA........................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGCCTTGCGGGTAACAACATG................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................TCCGCCTTGCTCTGTAGAGGC........................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTGACAGTATAAGTCTGGGAC.. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCGGATCAGGAAACCGTAAAT....................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTCCGCCTTGCTCTGTAGA........................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CTAGCTGCGCTGCTCGACTA................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCCACCCTAAACCTTAACTTT...................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GCGGGTAACAACATGAATGTGTCC........................................................................................................................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................TGTGTCCACCCTAAACCTTAAC......................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GCCTTGCGAGTGACAACGTGAAT.............................................................................................................................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...GTACAATTCTCACCATGATGC................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CCGCCTTGCTCTGTAGAGG......................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................GGGCATTTCATATAAAAACTA................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AAACCGTAAATCTGACAGTAT............. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................ACTCGACTACTCTACCAAGTA.................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTCCGGATCAGGAAACCGTAA......................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................ACTCGACTACTCTACCAAATA.................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTGATCAGGAAACCGTAAA........................ 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCGGGTCAGGGAACCGTAAA........................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................GTCCACCCTGAGCCTTAACT........................................................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AGTTCTCACCATAATGCCTTG............................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GACTACTCTACCAAATAGGTC................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................ACGTGAATGTGTCCACCCTAAA................................................................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCAGGAAACCGTGAATCTGAC.................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CTAGCTGCGCTACTCGACTAC............................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTCCGCCTTGCTCTGTAGAGGC........................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CGCCTTGCTCTGTAGAGGCTG...................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................ACTTTACGATGGGTAACTTTT...................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TCCGTCGTCCGCCTTGCTCTG............................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GTACAATTCTCACCGTAATGC................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................TTGCGAGTAACAACATGAATG............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CGGGTCAGGGAACCGTAAATC...................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GTAGAGGCTGGGGCATTTCATATAA....................................................................................... 25 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................GCTCTGTAGGGGCTGGGGCAT................................................................................................ 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................GCTCTGTAGAGGCTGGGGCAT................................................................................................ 21 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCGGTTCCGGGTCAGGAAAC.............................. 20 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CTCTGTAGAGGCTGGGGCGTT............................................................................................... 21 1 12 0.25 3 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GAACTAAAGCACGTTCATA.................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................ACTAAAGCACGTTCATAACC................................................................................................................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTAATCTGTCAGTATAAG.......... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12822:1241723-1241973 + dvi_2439 CAGCATG-TTAAGAG-TGGTATTACGGAACGCT-----------------------------------------------------------CATTGTTGTACTTACACAGGTGGGATTTGGAAT--------------------------------------------------------TGA-----------AATGCTACCCATTGAAA-------ATGGT-GAAAAGGGTAGATTGATTTCGTGCAAATATATGCAGCAGGCGGAACGAGACATCTCCGACCCCGTAAAGTATA----TTTTTGATCGACGCGATGAGCTGATGAGATGGTTTATCTAGCTAAGGCC------------------TAGTCCTTTGGCATTTAGACTGTCATATTCAGACCCTGTC-----
droMoj3 scaffold_6680:22560891-22561076 - AATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCATTGAAA-------ATGGGAAATCAGGGTATAATGGTTTTGTAAAAAAGTATGTAAGGGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGCACGACGAGCTGA---ATCG----ATTTCATACTAGAGATTT----------------ATGCTTTGAAATGTACA----CACATTTTAACCATATGATCAC
droGri2 scaffold_14906:223583-223776 + TTATTATT-------------------------------------------------------------------------------------------GTACATTTACAT----------------------------------------------------------------------ATATAT--------GTTTATACCCTGAACCCATTAAAAATGGGTAAAAAGGGTAAAATGGTTTTGTGCAAATGAATG-AACAGGCAGAAGGATGCATTTCCGACCCCAGAAAGTATATATATTCTTGATCAGGGTCAACAGCCGA---GTCG----ATGTAGCCATGTCCGTCTGTCAGTCCGTCGGT------------AT-------------------------------
droWil2 scf2_1100000004958:2228664-2228884 + TGAAA---------G-TGATAAAACGTAGCGAT-----------------------------------------------------------TTTCGATGCACGTGAGCAAAGA----------------------------------------TGGTCAGTT-------------------AGAAT--------TTTTATACCATACACCC-------ATAGGGTGAAATGGTATACTAAAGTCGCCAAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCTTGATCAGGATCAACAACCGA---GTCG----ATCTAGCCATGTCCGTCTGTCCCTACGACATTTA-------------------------------------------
dp5 XR_group6:9301959-9302052 + GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGGGTATATTGTAATCGGGCAGATGTATGCAACAGGCAGCAGTAAGCATTTCCGACCCCATAGAGTACA----TTCTGCATCAG---------TCGA---AGAG----AT---------------------------------------------------------------------------
droPer2 scaffold_19:1315390-1315450 - CAACATG-TCAAGAC-TGCCATAACCGAACGCT-----------------------------------------------------------CTTTGCTGTACTTACACAGGTAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT----TT---------------------------------------------------------------------------
droAna3 scaffold_13499:999221-999439 + CTTACTTAA-----G-TGGTATTTGGTGAAATT-----------------------------------------------------------C--------------------------------------------------------------------------------------------GT--------TTTTATACCCTT------------------GCAGAGGGTATTATAATTTTGGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCCATAAAGTATATATAATCTTGATCAGGATCATCTCCTGA---GTCG----ATATAAGCATGTCCGTCTGTTTATACGCAAACTAGTCTGTCAGTTTTAGAGCTATCGAATTGATACTTTGCA-----
droBip1 scf7180000393392:14383-14590 - TACATA----------------------------------------------------------------------------------------------------TACAGGTACCATTTAGTAT--------------------------------------------------------AAAGAT--------TTTTATATCCTT------------------GCAGAGGGTATTATAATTTTGTCCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAAATATTCTTGATTAGGATCACCTCCTGA---GTCC----GTCTGTCTTTTTCT----------ACGCAAACTAGTCTCTCAGTTTTAAAGCTATCGTCTTGAAACTTTG-------
droKik1 scf7180000302698:529094-529210 - TAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGATAGCTTAGTAACAAGAAAATATATGTGACATGCAGAAGGAGACTTCTCTGACCCAACAAAGTATGTTTATTATTGATTGACATTACCAGCCGA---GCCG----ATTTAGCCAAG------------------------------------------------------------------
droFic1 scf7180000454096:381709-381764 - CAACACG-TTAAAAC-GGGCATCACCGAACGCT-----------------------------------------------------------CTTTGCTGTACTTACACAGGTGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490584:8453-8697 + TAGGA---------T-TGAAGCTACGGAACAAC-----------------------------------------------------------CATTGATATTTTCAAATAAATGAAGTTTAAATTTAAAGTGCCACAATGATGTTCAACAAACTTAGTTAGTTAGCTTAGTTT-TTTGT---CTTAT--------TTTTATACCCTT------------------GCAGAGGGTATTATAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATGACTAGGCGA---GTCG----ATCTAGCCATGTCC---------------------------------------------------------------
droRho1 scf7180000779523:389997-390225 - CGCCCTA-AGTGGATTTGTTAT-----GGGAATTTTCACTGTTTTATGCTTATTTATGTGATAT--------------------------------------------------------------------------------------------------------------TAATG---CAGAT--------TTTTATACCCGTTACTC-------GTAGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGA---GTCG----ATATAGCCATGTCCTTCTGTCCGTCAGTCTGT--------C------------------------------------
droBia1 scf7180000302074:27665-27857 + TTGAAGTT-------------------------------------------------------------------------------------------------ATACAG--------------------------------------------------------------------------AT----TTATAACTATACCTGTTACTC-------GTAGATTAAAAGGGTAGAATAGATTCGTCAGAAAGTATGTAACAGGTAAAAGGAAGCGTTTCCGACCCCATGAAGTATATATATTCTTGATCAAGATAAATAGCTGA---GTCG----ATCTAGCCATGTCCGTCCGTCCGTATGAACGC--------------------TGACATGTGTAAA------------
droTak1 scf7180000415346:46168-46383 - CATTTTA-ATAATA--AGATGCCGGCTAACGTT-----------------------------------------------------------TATTTGTGTAGGCGTACAGAGAAAG----------------------------------------AAAATA----------TTGATGGA-AAAAT--------AGTTATACCCGTTACTT-------GTAGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGGATCACTAGCCGA---GTCG----ATCTAGCCATGTCC---------------------------------------------------------------
droEug1 scf7180000409738:30512-30682 + TTAAATGG-------------------------------------------------------------------------------------------------------ATAGAATTTAAA----------------------------------------------------------TGAACTGAACTTCTTGTTATACCCGTTACTC-------GTAGAGTAAAAGGGTATATTAGATTCGTTGAAAAGTATGTAACAGGTGGAAGGAAGACTTTCCGACCCTATAAACTATATATATTCTTGATCAGGATGAATAGGGAA---GACG----ATAAATCCA--------------------------------------------------------------------
dm3 chr3R:27890321-27890438 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGGGTATATTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACTATATAAAGTATATATATTCTTGATCAGGATTAATAGCCGA---GTCG----ATCTAGCCATGTCC---------------------------------------------------------------
droSim2 node_8654:13329-13516 + GGGATTG-A----------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------CG----TTATTATAATACCCGTTACTC-------GTAGAGTAAAAGGGTATACTATATTCGTTAGAAAGTATGTAACAGGCAGAATAAAGCGTTTCCGACCATGTAAAGTATACATATTCTTAATCAGGATCAATAGCCGA---GTTG----ATCTAGCCATGTCCGTCTGTCCGTATGTACGT--------------------CGAGATATTAGGA------------
droSec2 scaffold_28:536140-536290 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGGGTATACTAGATTCGTTGAAAAGTATTTAACAGGCAGAAGGAAGCGTTTCCGACTTCATAAAGTATATATATTCTTGATCAGGATCAATAGCCGA---ATGG----ATCTAGCTATGCTCGTCTGCCCGTATGAAAGTCAAAATCTCAGATTC------------------------------
droYak3 v2_chr3h_random_002:587261-587439 - CATTGTG-AAAAA-----------------------------------------------------------------C--------------------------ATACAGGCATGCTCCGGTA----------------------------------------------------------ATCGT--------AATTATACCCGTTACTC-------GTAGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGA---GTCG----ATCTGGCCATGTCC---------------------------------------------------------------
droEre2 scaffold_4770:482651-482851 + CAATTTC---------------------------------------------------TGATATTAAATTTTGTAATACATAACGTCAATTCCTTTGCTGCACTTG-----------------------------------------------------------------------------GAGT--------TTTTATACCCCTTACTA-------GTAGAGTAAAAGGATATACTAGATTCGTTTAAAAGTATGTTACAGACAGAAGGAAACGTTTCTGACCATATAAAGTATATATATTCTTGATCAGGGTCAATAGGCCA---GTCG----ATCTGGCCATGTCC---------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAGCATG-TTAAGAG-TGGTATTACGGAACGCT-----------------------------------------------------------CATTGTTGTACTTACACAGGTGGGATTTGGAAT--------------------------------------------------------TGA-----------AATGCTACCCATTGAAA-------ATGGT-GAAAAGGGTAGATTGATTTCGTGCAAATATATGCAGCAGGCGGAACGAGACATCTCCGACCCCGTAAAGTATA----TTTTTGATCGACGCGATGAGCTGATGAGATGGTTTATCTAGCTAAGGCC------------------TAGTCCTTTGGCATTTAGACTGTCATATTCAGACCCTGTC-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................AAGGGTAGATTGATTTCGTGC.....................................................................................................................................................................2114.004000000010000000001000000100000000100000000000000000000000000000
.............................................................................................................................................................................................................ATTGAAA-------ATGGT-GAAAAGGGT....................................................................................................................................................................................2114.004000000002020000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGCGATGAGCTGATGAGATGG................................................................................2113.003000000000010000000000000000000100000000000000000000000000000010
....ATG-TTAAGAG-TGGTATTACGG...................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000001000000000000000000000010100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GATGAGCTGATGAGATGGTTT.............................................................................2113.003000000003000000000000000000000000000000000000000000000000000000
.............AG-TGGTATTACGGAACGCT-----------------------------------------------------------C.................................................................................................................................................................................................................................................................................................................................2013.003000000002000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TGATCGACGCGATGAGCTGAT.......................................................................................2113.003000000000000000100000000000100010000000000000000000000000000000
..............G-TGGTATTACGGAACGCT-----------------------------------------------------------CAT...............................................................................................................................................................................................................................................................................................................................2112.002000000010000000000000000000000000000000000000000000000000000010
................TGGTATTACGGAACGCT-----------------------------------------------------------CATT..............................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000001000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CTGATGAGATGGTTTATCTAG.......................................................................2112.002000000000000000000000000000002000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AGTATA----TTTTTGATCGACGCG.................................................................................................2112.002000000000000000000000000000001000000000000000000000000000000010
..............................................................................................................................................................................................................TTGAAA-------ATGGT-GAAAAGGGTA...................................................................................................................................................................................2112.002000000100000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTTGATCGACGCGATGAGCT..........................................................................................2012.002000000000000001000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................ATGCAGCAGGCGGAACGAGAC..........................................................................................................................................2112.002000000000000000000000000000101000000000000000000000000000000000
.............AG-TGGTATTACGGAACGCT-----------------------------------------------------------CA................................................................................................................................................................................................................................................................................................................................2112.002001000000000000001000000000000000000000000000000000000000000000
........TTAAGAG-TGGTATTACGGAAC................................................................................................................................................................................................................................................................................................................................................................................................2112.002010000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................TGGT-GAAAAGGGTAGATTG..............................................................................................................................................................................1911.001000000001000000000000000000000000000000000000000000000000000000
.........TAAGAG-TGGTATTACGGAAC................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000001000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AGTCCTTTGGCATTTAGACTG.......................2111.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................GATTTCGTGCAAATATATGCA..........................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TTTTTGATCGACGCGATGAGC...........................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................ACGCGATGAGCTGATGAGAT..................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ACTGTCATATTCAGACCCTGT......2111.001000000000000000000000000000001000000000000000000000000000000000
.....................TTACGGAACGCT-----------------------------------------------------------CATTGTTGTC........................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................TTGTACTTACACAGGTGGGAT........................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TAGATTGATTTCGTGCAAATA................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................GATTTGGAAT--------------------------------------------------------TGA-----------AATGCTACCCATT..............................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AAGTATA----TTTTTGATCGACGC..................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................GTAGATTGATTTCGTGCAAAT.................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................ACAGGTGGGATTTGGAAT--------------------------------------------------------TG.......................................................................................................................................................................................................................................2011.001000000000000000000000000100000000000000000000000000000000000000
......................................................................................................CTTACACAGGTGGGATTTGGAT..................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................AT--------------------------------------------------------TGA-----------AATGCTACCCATTGAG...........................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................A-------ATGGT-GAAAAGGGTAGATTG..............................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................TTCGTGCAAATATATGCAGC........................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................TGGGATTTGGAAT--------------------------------------------------------TGA-----------AATGC......................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TGAGCTGATGAGATGGTTTAT...........................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................ATTTGGAAT--------------------------------------------------------TGA-----------AATGCTACC..................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTGGCATTTAGACTGTC.....................1811.001010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTTGATCGACGCGATGAGCTGAGA......................................................................................2411.001000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................A----TTTTTGATCGACGCGATGAG............................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
.....TG-TTAAGAG-TGGTATTACGGA..................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................TATGCAGCAGGCGGAACGAGA...........................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
....................ATTACGGAACGCT-----------------------------------------------------------CATTGTT...........................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
......................................................................................................CTTACACAGGTGGGATTTGGA...................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................ATTTAGACTGTCATATTCAGA............2111.001000000000000000001000000000000000000000000000000000000000000000
.........TAAGAG-TGGTATTACGGAACG...............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTGATCGACGCGATGAGCTGA........................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TATA----TTTTTGATCGACGCGAT...............................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTTTGATCGACGCGATGAG............................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................TAGACTGTCATATTCAGACCC.........2111.001010000000000000000000000000000000000000000000000000000000000000
............................ACGCT-----------------------------------------------------------CATTGTTGTACTTACACAG...............................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................CATTGAAA-------ATGGT-GAAAAGGG.....................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
..GCATG-TTAAGAG-TGGTATTACGGA..................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................TTGTTGTACTTACACAGGTGG...........................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
............GAG-TGGTATTACGGAACGCT-----------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................TGTTGTACTTACACAGGTGGGAT........................................................................................................................................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTTGATCGACGCGATGAGCTGT........................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
......G-TTAAGAG-TGGTATTACG....................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTTTGATCGACGCGATGAGCT..........................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
..............................GCT-----------------------------------------------------------CATTGTTGTACTTACACAGA..............................................................................................................................................................................................................................................................................................................2311.001000000000000000000100000000000000000000000000000000000000000000
.............AG-TGGTATTACGGAACGCT-----------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................TGATCGACGCGATGAGCTGA........................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................ACGAGACATCTCCGACCCCGT............................................................................................................................2120.501000000000000000000000000100000000000000000000000000000000000000
droMoj3
AATTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACCCATTGAAA-------ATGGGAAATCAGGGTATAATGGTTTTGTAAAAAAGTATGTAAGGGGCAGAAGGAATCATCGCAGACCCCATAAAGTATATATATTCTTGATCAGCACGACGAGCTGA---ATCG----ATTTCATACTAGAGATTT----------------ATGCTTTGAAATGTACA----CACATTTTAACCATATGATCACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................TGTACA----CACATTTTAACCATATGA....24200.153300000
..............................................................................................................................................................................................................................................................................................................................................................................................TGTACA----CACATTTTAACCATATGATC..26170.061000010
............................................................................................................................................................................................................................................................................................CCCCATAAAGTATATATATTCTTGA.........................................................................................................25200.051100000
droGri2
TTATTATT-------------------------------------------------------------------------------------------GTACATTTACAT----------------------------------------------------------------------ATATAT--------GTTTATACCCTGAACCCATTAAAAATGGGTAAAAAGGGTAAAATGGTTTTGTGCAAATGAATG-AACAGGCAGAAGGATGCATTTCCGACCCCAGAAAGTATATATATTCTTGATCAGGGTCAACAGCCGA---GTCG----ATGTAGCCATGTCCGTCTGTCAGTCCGTCGGT------------AT-------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TGAAA---------G-TGATAAAACGTAGCGAT-----------------------------------------------------------TTTCGATGCACGTGAGCAAAGA----------------------------------------TGGTCAGTT-------------------AGAAT--------TTTTATACCATACACCC-------ATAGGGTGAAATGGTATACTAAAGTCGCCAAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATATATTCTTGATCAGGATCAACAACCGA---GTCG----ATCTAGCCATGTCCGTCTGTCCCTACGACATTTA-------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................GAAGGAAGCATCTCCGACCCC..............................................................................................................................21200.9018016020
..............................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGC..........................................................................................................................................22200.35707000
..................................................................................................................................................................T-------------------AGAAT--------TTTTATACCATACACCC-------A..................................................................................................................................................................................................2450.20101000
...........................................................................................................................................................................................................................................................................................................................................CG----ATCTAGCCATGTCCGTCTGTCCC......................................................2570.14101000
..........................................................................................................................................................................................................................................................................................................................................TCG----ATCTAGCCATGTCCGTCTGTCCC......................................................2670.14101000
............................................................................................................................................................................................................................TAGGGTGAAATGGTATACTAAAG...........................................................................................................................................................................2380.13100100
.................................................................................................................................................................................................................................................................................................................................................ATCTAGCCATGTCCGTCTGTCC.......................................................22200.10220000
.......................................................................................................................................................................................................................................................CAAAATGTATGTAACAGGCAGAAGGAA............................................................................................................................................27200.10202000
................................................................................................................................................................................................................................................................................................................................AACCGA---GTCG----ATCTAGCCATGTCCG..............................................................25200.10202000
...................................................................................................................................................................................................................................................................................................................................CGA---GTCG----ATCTAGCCATGTCC...............................................................21200.10200002
....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCCT.....................................................21130.08101000
..................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCAT........................................................................................................................................20200.05100100
...................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCATC.......................................................................................................................................20200.05101000
dp5
GA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGGGTATATTGTAATCGGGCAGATGTATGCAACAGGCAGCAGTAAGCATTTCCGACCCCATAGAGTACA----TTCTGCATCAG---------TCGA---AGAG----AT---------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................TTTCCGACCCCATAGAGTA......................................................................................................................19110.0910100000000
droPer2
CAACATG-TCAAGAC-TGCCATAACCGAACGCT-----------------------------------------------------------CTTTGCTGTACTTACACAGGTAATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT----TT---------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................ATAACCGAACGCT-----------------------------------------------------------CTTTGCTG..........................................................................................................................................................................................................................................................................................................................2112.002200000
...................CATAACCGAACGCT-----------------------------------------------------------CTTTGC............................................................................................................................................................................................................................................................................................................................2011.001010000
....................ATAACCGAACGCT-----------------------------------------------------------CTTTGCTGTAC.......................................................................................................................................................................................................................................................................................................................2411.001010000
droAna3
CTTACTTAA-----G-TGGTATTTGGTGAAATT-----------------------------------------------------------C--------------------------------------------------------------------------------------------GT--------TTTTATACCCTT------------------GCAGAGGGTATTATAATTTTGGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCCATAAAGTATATATAATCTTGATCAGGATCATCTCCTGA---GTCG----ATATAAGCATGTCCGTCTGTTTATACGCAAACTAGTCTGTCAGTTTTAGAGCTATCGAATTGATACTTTGCA-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................ACGCAGTGAAGGAGACATCTC.....................................................................................................................................21200.459090000
....................................................................................................................................................................................................................................................................................................................................GA---GTCG----ATATAAGCATGTCCGTCTG..........................................................25200.357700000
..........................................................................................................................................................................................................................................................................TGAAGGAGACATCTCCGACCCC..............................................................................................................................22200.306060000
.......................................................................................................................................................................................................................................................................CAGTGAAGGAGACATCTCC....................................................................................................................................19200.204040000
.................................................................................................................................................................................................................................................TTTTGGTCAAAAGTGTGCAAC........................................................................................................................................................21200.204000040
.................................................................................................................................................................................................................................................................................................................................CCTGA---GTCG----ATATAAGCATGTCC...............................................................23200.204040000
.................................................................................................................................................................................................................................................................................................................................CCTGA---GTCG----ATATAAGCATGTCCGTCTG..........................................................28200.153300000
....................................................................................................................................................................................................................................................TGGTCAAAAGTGTGCAACGCAGTG..................................................................................................................................................24200.153300000
.........................................................................................................................................................................................................................................................................GTGAAGGAGACATCTCCGACCC...............................................................................................................................22200.102020000
...........................................................................................................................................................................................................................................................................................................................................CG----ATATAAGCATGTCCGTCTG..........................................................21200.102000002
.........................................................................................................................................................................................................................................................................................................................................GTCG----ATATAAGCATGTCCGTCTGTTT.......................................................26160.061100000
...........................................................................................................................................................................................................................................................................................................................TCATCTCCTGA---GTCG----ATATAAGCATGTC................................................................28160.061010000
.................................................................................................................................................................................................................................................................................................................................CCTGA---GTCG----ATATAAGCATGTCCG..............................................................24200.051100000
..................................................................................................................................................................................................................................................................CAACGCAGTGAAGGAGAC..........................................................................................................................................18200.051100000
...........................................................................................................................................................................................................................................................................................................................................CG----ATATAAGCATGTCCGTCTGT.........................................................22200.051100000
................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCATCTCC...........................................................................................19200.051000001
...................................................................................................................................................................................................................................................................AACGCAGTGAAGGAGACATC.......................................................................................................................................20200.051000001
.......................................................................................................................................................................................................................................................................CAGTGAAGGAGACATCTCCGAC.................................................................................................................................22200.051001000
...................................................................................................................................................................................................................................................................................CATCTCCGACCCCATAAAGT.......................................................................................................................20200.051010000
..............................................................................................................................................................................................................................................................................................................................TCTCCTGA---GTCG----ATATAAGCA....................................................................21200.051100000
......................................................................................................................................................................................................................................................GTCAAAAGTGTGCAACGCAGTGAA................................................................................................................................................24200.051010000
....................................................................................................................................................................................................................................................................ACGCAGTGAAGGAGACATCTCCGACCCC..............................................................................................................................28200.051010000
...........................................................................................................................................................................................................................................................................GAAGGAGACATCTCCGACCCC..............................................................................................................................21200.051010000
droBip1
TACATA----------------------------------------------------------------------------------------------------TACAGGTACCATTTAGTAT--------------------------------------------------------AAAGAT--------TTTTATATCCTT------------------GCAGAGGGTATTATAATTTTGTCCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATAAATATTCTTGATTAGGATCACCTCCTGA---GTCC----GTCTGTCTTTTTCT----------ACGCAAACTAGTCTCTCAGTTTTAAAGCTATCGTCTTGAAACTTTG-------SizeHit CountTotal NormTotal
No Reads
droKik1
TAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATGATAGCTTAGTAACAAGAAAATATATGTGACATGCAGAAGGAGACTTCTCTGACCCAACAAAGTATGTTTATTATTGATTGACATTACCAGCCGA---GCCG----ATTTAGCCAAG------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAACACG-TTAAAAC-GGGCATCACCGAACGCT-----------------------------------------------------------CTTTGCTGTACTTACACAGGTGAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TAGGA---------T-TGAAGCTACGGAACAAC-----------------------------------------------------------CATTGATATTTTCAAATAAATGAAGTTTAAATTTAAAGTGCCACAATGATGTTCAACAAACTTAGTTAGTTAGCTTAGTTT-TTTGT---CTTAT--------TTTTATACCCTT------------------GCAGAGGGTATTATAATTTCAGTCAGAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATATTCTTGATCAGCATGACTAGGCGA---GTCG----ATCTAGCCATGTCC---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGCCCTA-AGTGGATTTGTTAT-----GGGAATTTTCACTGTTTTATGCTTATTTATGTGATAT--------------------------------------------------------------------------------------------------------------TAATG---CAGAT--------TTTTATACCCGTTACTC-------GTAGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGGGTCACTAGCCGA---GTCG----ATATAGCCATGTCCTTCTGTCCGTCAGTCTGT--------C------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTGAAGTT-------------------------------------------------------------------------------------------------ATACAG--------------------------------------------------------------------------AT----TTATAACTATACCTGTTACTC-------GTAGATTAAAAGGGTAGAATAGATTCGTCAGAAAGTATGTAACAGGTAAAAGGAAGCGTTTCCGACCCCATGAAGTATATATATTCTTGATCAAGATAAATAGCTGA---GTCG----ATCTAGCCATGTCCGTCCGTCCGTATGAACGC--------------------TGACATGTGTAAA------------SizeHit CountTotal NormTotal
No Reads
droTak1
CATTTTA-ATAATA--AGATGCCGGCTAACGTT-----------------------------------------------------------TATTTGTGTAGGCGTACAGAGAAAG----------------------------------------AAAATA----------TTGATGGA-AAAAT--------AGTTATACCCGTTACTT-------GTAGAGTAAAAGGGTATATTGTATTCGTGCAAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTCTTGATCAGGATCACTAGCCGA---GTCG----ATCTAGCCATGTCC---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TTAAATGG-------------------------------------------------------------------------------------------------------ATAGAATTTAAA----------------------------------------------------------TGAACTGAACTTCTTGTTATACCCGTTACTC-------GTAGAGTAAAAGGGTATATTAGATTCGTTGAAAAGTATGTAACAGGTGGAAGGAAGACTTTCCGACCCTATAAACTATATATATTCTTGATCAGGATGAATAGGGAA---GACG----ATAAATCCA--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGGGTATATTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACTATATAAAGTATATATATTCTTGATCAGGATTAATAGCCGA---GTCG----ATCTAGCCATGTCC---------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................TTGATCAGGATTAATAGCCGA---GT...................................................................................2348.503400000000000000000000000000000000000000001100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000001000000000000000000000000000000000000000001000015000000001000000000000200100000000000000000000000000000000000000000000000000000000000000000000001000000000500000000000000002000000000
.................................................................................................................................................................................................................................................................................................................TTGATCAGGATTAATAGCCGA---GTC..................................................................................2436.67200000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000000000000000000000000000000000000010100008000000003000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTGATCAGGATTAATAGCCGA---GTCG----.............................................................................2536.67200001000000000000000000100000000000000000000000000000000001000000000000000000000000300010000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000100004000000002000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTGATCAGGATTAATAGCCGA---GTCG----A............................................................................2635.67170000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100001000000000200000000000000000000000000000000000103004100000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATTAATAGCCGA---GTC..................................................................................2733.33100000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000300000000000000000000000000000000000100000000000000000100000001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTGATCAGGATTAATAGCCGA---.....................................................................................2163.332000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000000013000000000000000000000000000000000000000001000000000000010100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATTAATAGC...........................................................................................2153.20160000000000000000000000000000000000000000001000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000001400010000000000000000000000000020000000000000000000100000
..............................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATTAATAGCCGA---.....................................................................................2452.60130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000005000000000000000000000000000000000000000000000000100000000000000000103200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TAATAGCCGA---GTCG----ATCTAGCCATG..................................................................2522.5050000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000200000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TTAATAGCCGA---GTCG----ATCTAGCCATG..................................................................2622.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................TCGTTGAAAAGTATGTAACAGGCAGA.................................................................................................................................................26202.40480000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007001300000000000000000000000000000000000000000000020000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AGGATTAATAGCCGA---GTCG----ATCTAGC......................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TCAGGATTAATAGCCGA---GTCG----ATCTA........................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000
......................................................................................................................................................................................................................................................................................................................CAGGATTAATAGCCGA---GTCG----ATCTAGC......................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTGATCAGGATTAATAGCCGA---GTCG----AT...........................................................................2731.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000
......................................................................................................................................................................................................................................................TTGAAAAGTATGTAACAGGCAGAAGGA.............................................................................................................................................27201.202400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000160000000000000000000000000000000000000000000000000000000000000000000400000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TAATAGCCGA---GTCG----ATCTAGCCA....................................................................2321.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATTAATAGCCGA---G....................................................................................2721.0020000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATTAATAGCC..........................................................................................2251.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000001000000
...............................................................................................................................................................................................................................................................................................................TCTTGATCAGGATTAATAGCCGA---GTC..................................................................................2631.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TCAGGATTAATAGCCGA---GTCG----ATCTAG.......................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATTAATAGC...........................................................................................2531.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTGATCAGGATTAATAGCCGA---G....................................................................................2241.0040000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATTAATAGCC..........................................................................................2341.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TCTTGATCAGGATTAATAGC...........................................................................................2051.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATTAATAGCC..........................................................................................2631.0030000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TTAATAGCCGA---GTCG----ATCTAGCCAT...................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATTAATAGCCGA---G....................................................................................2541.0040000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................TCAGGATTAATAGCCGA---GTCG----ATCTAGC......................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TTGAAAAGTATGTAACAGGCAGAAGG..............................................................................................................................................26200.951900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................ATCAGGATTAATAGCCGA---GTC..................................................................................2150.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CTTGATCAGGATTAATAGCCG.........................................................................................2150.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................TTGAAAAGTATGTAACAGGCAGAAG...............................................................................................................................................25200.80160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATTAATAGC...........................................................................................2240.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGATTAATA.............................................................................................2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATTAATAGCCGA---.....................................................................................2630.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTGATCAGGATTAATAGCCGA---GTCG----ATC..........................................................................2830.6720010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATTAATAG............................................................................................2330.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATTAATAGCCGA---G....................................................................................2630.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.......................................................................................................................................................................................................................................................TGAAAAGTATGTAACAGGCAGAAGGA.............................................................................................................................................26200.60120000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
GGGATTG-A----------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------CG----TTATTATAATACCCGTTACTC-------GTAGAGTAAAAGGGTATACTATATTCGTTAGAAAGTATGTAACAGGCAGAATAAAGCGTTTCCGACCATGTAAAGTATACATATTCTTAATCAGGATCAATAGCCGA---GTTG----ATCTAGCCATGTCCGTCTGTCCGTATGTACGT--------------------CGAGATATTAGGA------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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..............................................................................................................................................................................................................................................................TATGTAACAGGCAGAATAAAGCGT........................................................................................................................................2420.50100000000001000000
...........................................................................................................................................................................................................................................................................................................................................TG----ATCTAGCCATGTC................................................................1540.50200000000002000000
...............................................................................................................................................................................................................................................................................................................TCTTAATCAGGATCAATAGCCGA---GT...................................................................................2560.50300000001110000000
.......................................................................................................................................................................................................................................................................................................ATACATATTCTTAATCAGGA...................................................................................................2020.50100000000100000000
...........................................................................................................................................................................................................................................................................................................................................TG----ATCTAGCCATGTCCGTCTGTCCG......................................................2520.50100000010000000000
............................................................................................................................................................................................................................TAGAGTAAAAGGGTATACTATATTC.........................................................................................................................................................................2540.50200000000002000000
............................................................................................................................................................................................................................................................................................................................................G----ATCTAGCCATGTCCGTCTGTCCGTA....................................................26200.35700000022120000000
...............................................................................................................................................................................................................................................................................................................................TAGCCGA---GTTG----ATCTAGCCAT...................................................................2130.33100000000001000000
...............................................................................................................................................................................................................................................................................................................................TAGCCGA---GTTG----ATCTAGCCATGTCCGTC............................................................2830.33100000000001000000
............................................................................................................................................................................................................................................................................................................................CAATAGCCGA---GTTG----ATCTAGCCATGTC................................................................2730.33100000000001000000
............................................................................................................................................................................................................................................................................................................................CAATAGCCGA---GTTG----ATCTAGCCATG..................................................................2530.33100000000001000000
...........................................................................................................................................................................................................................................................................................................................................TG----ATCTAGCCATGTCCGTC............................................................1930.33100000000001000000
..................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCGTATG..................................................26200.30600100003200000000
....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCGTA....................................................22200.30600000012102000000
..................................................................................................................................................................................................................TC-------GTAGAGTAAAAGGGTATACTAT.............................................................................................................................................................................2440.25100000000000010000
...........................................................................................................................................................................................................................................................................................................................................TG----ATCTAGCCATGTCC...............................................................1640.25100000000001000000
............................................................................................................................................................................................................................TAGAGTAAAAGGGTATACTATAT...........................................................................................................................................................................2340.25100000000001000000
..........................................................................................................................................................................................................................................................AAAGTATGTAACAGGCAGAATAAAG...........................................................................................................................................2540.25100000000001000000
.........................................................................................................................................................................................................................................................GAAAGTATGTAACAGGCAGAATAA.............................................................................................................................................2440.25100000000000010000
............................................................................................................................................................................................................................TAGAGTAAAAGGGTATACTATATT..........................................................................................................................................................................2440.25100000000001000000
............................................................................................................................................................................................................................TAGAGTAAAAGGGTATA.................................................................................................................................................................................17200.20400000000004000000
..........................................................................................................................................................................................................................................................................................................................ATCAATAGCCGA---GTTG----ATCTA........................................................................2150.20100000000001000000
.............................................................................................................................................................................................................................................................................................................................AATAGCCGA---GTTG----ATCTAGCCATGC.................................................................2560.17100000000001000000
..................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTC............................................................16200.15300000000003000000
...................................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCTGTCCG......................................................21200.15310000000000002000
......................................................................................................................................................................................................................................................................AGGCAGAATAAAGCGTT.......................................................................................................................................1780.13100000000001000000
...................................................................................................................................................................................................................................................................AACAGGCAGAATAAAGCGT........................................................................................................................................1980.13100000000001000000
..................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCG......................................................22200.10200100000000010000
......................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGTCCGTA....................................................20200.10200000020000000000
.............................................................................................................................................................................................................................................................................................................ATTCTTAATCAGGATCAAT..............................................................................................19130.08100000000001000000
...................................................................................................................................................................................................................................................................................................................AATCAGGATCAATAGC...........................................................................................16150.07100000000001000000
...........................................................................................................................................................................................................................................................................................................................................TG----ATCTAGCCATGTCCGTCAAA.........................................................22150.07100000000100000000
............................................................................................................................................................................................................................................................................................................................................G----ATCTAGCCATGTCCGTCTGTCCGT.....................................................25200.05100000001000000000
....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCGT.....................................................21200.05100100000000000000
....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCG......................................................20200.05101000000000000000
...............................................................................................................................................................................................................TACTC-------GTAGAGTAAAAGGGT....................................................................................................................................................................................20200.05100000000001000000
................................................................................................................................................................................................................ACTC-------GTAGAGTAAAAGGGT....................................................................................................................................................................................19200.05100000000000100000
............................................................................................................................................................................................................................................................................................................................................G----ATCTAGCCATGTCCGT.............................................................17200.05100000000001000000
............................................................................................................................................................................................................................TAGAGTAAAAGGGTATACTA..............................................................................................................................................................................20200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................ATCTAGCCATGTCCGTCTGTC........................................................21200.05100100000000000000
..................................................................................................................................................................................................................TC-------GTAGAGTAAAAGGGTATA.................................................................................................................................................................................20200.05100000000001000000
....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCGTAT...................................................23200.05100000000010000000
............................................................................................................................................................................................................................................................................................................................................G----ATCTAGCCATGTCCGTC............................................................18200.05100000000001000000
...................................................................................................................................................................................................................C-------GTAGAGTAAAAGGG.....................................................................................................................................................................................15200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCGT.....................................................23200.05100000001000000000
...................................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCTGTCCGTATG..................................................25200.05100000000010000000
....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTC........................................................18200.05110000000000000000
....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCGG.....................................................21200.05100000010000000000
....................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTG..........................................................16200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCC.......................................................21200.05110000000000000000
............................................................................................................................................................................................................CGTTACTC-------GTAGAGTA...........................................................................................................................................................................................16200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................G----ATCTAGCCATGTCC...............................................................15200.05100000000001000000
droSec2
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGGGTATACTAGATTCGTTGAAAAGTATTTAACAGGCAGAAGGAAGCGTTTCCGACTTCATAAAGTATATATATTCTTGATCAGGATCAATAGCCGA---ATGG----ATCTAGCTATGCTCGTCTGCCCGTATGAAAGTCAAAATCTCAGATTC------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................GCAGAAGGAAGCGTTTCCGACTTCAGG...........................................................................................................................2720.5011000
.....................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGATCA................................................................................................25200.501010000
..................................................................................................................................................................................................................................................TTCGTTGAAAAGTATTTAACAGGCA...................................................................................................................................................2570.4333000
.....................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGATCAA...............................................................................................26200.3066000
.........................................................................................................................................................................................................................................................AAAAGTATTTAACAGGCAGAAGGA.............................................................................................................................................2460.1710100
..................................................................................................................................................................................................................................................TTCGTTGAAAAGTATTTAACAGGC....................................................................................................................................................2470.1411000
...........................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATAGCCGA---.....................................................................................27200.1022000
.....................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGATCAAT..............................................................................................27200.1022000
............................................................................................................................................................................................................................................ACTAGATTCGTTGAAAAGTAT.............................................................................................................................................................21200.1020200
..................................................................................................................................................................................................................................................TTCGTTGAAAAGTATTTAACAGGCT...................................................................................................................................................25100.1011000
...........................................................................................................................................................................................................................................TACTAGATTCGTTGAAAAGT...............................................................................................................................................................20200.0510001
......................................................................................................................................................................................................................................................................................................TATATATATTCTTGATCAGGATCAA...............................................................................................25200.0511000
.....................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTGAAAAGTA..............................................................................................................................................................27200.0511000
...................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCG.........................................................................................................................................18200.0510010
.....................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGAT..................................................................................................23200.0510010
.........................................................................................................................................................................................................................................TATACTAGATTCGTTGAAAAG................................................................................................................................................................21200.0510001
...................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGT.......................................................................................................................................................................20200.0510100
.....................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGATC.................................................................................................24200.0510010
....................................................................................................................................................................................................................................................................................................AGTATATATATTCTTGATCAGGATC.................................................................................................25200.0511000
..........................................................................................................................................................................................................................................ATACTAGATTCGTTGAAAAG................................................................................................................................................................20200.0510100
..................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGT.......................................................................................................................................................................21200.0510100
..................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGAA...................................................................................................................................................................25200.0511000
..................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTGA....................................................................................................................................................................24200.0511000
.....................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGATCAATA.............................................................................................28200.0511000
...................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTT......................................................................................................................................................................21200.0511000
........................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGATC.................................................................................................21200.0511000
droYak3
CATTGTG-AAAAA-----------------------------------------------------------------C--------------------------ATACAGGCATGCTCCGGTA----------------------------------------------------------ATCGT--------AATTATACCCGTTACTC-------GTAGAGTAAAAGGGTATACTAGATTCGTTGAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGCCGA---GTCG----ATCTGGCCATGTCC---------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................TC-------GTAGAGTAAAAGGGTATACTAGATT..........................................................................................................................................................................27200.8016000000000016
.............................................................................................................................................................................................................................................CTAGATTCGTTGAAAAGTATG............................................................................................................................................................21200.45909000000000
................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTTCCGA..................................................................................................................................28200.30606000000000
..........................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAATAGCC..........................................................................................26200.20404000000000
........................................................................................................................................................................................................................................................................................................................GGATCAATAGCCGA---GTCG----ATCTGGC......................................................................25200.15303000000000
..........................................................................................................................................................................................T--------AATTATACCCGTTACTC-------GTAGAG.............................................................................................................................................................................................24200.15303000000000
............................................................................................................................................................................................................................................................................................................................CAATAGCCGA---GTCG----ATCTGGCCAT...................................................................24200.15300300000000
.....................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGA---GTCG----ATCTGGCC.....................................................................29200.05100100000000
droEre2
CAATTTC---------------------------------------------------TGATATTAAATTTTGTAATACATAACGTCAATTCCTTTGCTGCACTTG-----------------------------------------------------------------------------GAGT--------TTTTATACCCCTTACTA-------GTAGAGTAAAAGGATATACTAGATTCGTTTAAAAGTATGTTACAGACAGAAGGAAACGTTTCTGACCATATAAAGTATATATATTCTTGATCAGGGTCAATAGGCCA---GTCG----ATCTGGCCATGTCC---------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................GTTTCTGACCATATAAAGT.......................................................................................................................19120.0810000010
...........................................................................................................................................................................................................................GTAGAGTAAAAGGATATAC................................................................................................................................................................................19160.0611000000

Generated: 05/17/2015 at 04:46 AM