ID:

dvi_2416

 Coordinate:

scaffold_12822:1123914-1124126 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.0 -9.8 -9.6

Flybase annnotation

CDS [Dvir\GJ14422-cds]; CDS [Dvir\GJ14422-cds]; exon [dvir_GLEANR_14369:4]; exon [dvir_GLEANR_14369:5]; intron [Dvir\GJ14422-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCCGGCTCGCCGCACACCCATGGGCCCGAGGTGAAGGCGGATGAATGCAGTTCGCCGGAGTTTACCGTTGAGATCCTCGACGAGCTGTCGGAGCTACAATAAACTATTTTCTTCCCCGTCATATTTGTTTAATGCATAAGATGTCACTGCAATAAATTGAATAGCACATGAATGTCTTCATGTTATCGTTTCTCTGCTACAGAAATAAGCCTAGCTTGTAGATATTTCGCAACTAATTAACTAATCCTTGCGCCTCTTGCAGTTGACGTCAAGCTGGAGTTTAGTTCGGAGCACTCGGCGAACACTACGCCG
*******************************************************************************************************************************************************************************(((.((.((((..((((.((((...))))...)))).)))).)).))).....(((((...............))))).....******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060682
9x140_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR1106726
embryo_14-16h
 SRR1106730
embryo_16-30h
 V047
embryo
 V053
head
 M027
male body		 M028
head
......................................................................................................................................................................................................................GCTTGAAGATATTACGCAAC............................................................................... 20 2 2 1.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................GATGAATGCAGTTCGCCGGAGTTT......................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................TTAACTAATCCTTGCGCCTCTTGCAGT................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GAATGCAGTTCGCCGGAGT........................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GTTGACGTCAAGCTGGAGTTTAGTT.......................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TCGGAGCACTCGGCGAACACTACGC.. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................TCTTCATGTTATCGTTTCTCT..................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................ACTAATTAACTAATCCTTGCGCCTCT....................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................TGAAGGCGGATGAATGCAGTT.................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................TCCGAGGTGAAGGCGGATGAATGCA....................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................TGAGATCCTCGACGAGCTCTCGG............................................................................................................................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CTAATTAACTAATCCTTGCGCCTCTTGC.................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AGGTGAAGGCGGATGAATGCA....................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................ATGGGAGCGCGGTGAAGGCGGA............................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................TTTCCCGTTGAGAGCCACGA........................................................................................................................................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CTTGCGCGTGTTACAGTTGA.............................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................GCTTGTTATCGTTTCTCT..................................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
.............................................................TGTAACGCTGAGATCCTCG......................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................GCGGAGCTCTCGACGAAC......... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

ACGGCCGAGCGGCGTGTGGGTACCCGGGCTCCACTTCCGCCTACTTACGTCAAGCGGCCTCAAATGGCAACTCTAGGAGCTGCTCGACAGCCTCGATGTTATTTGATAAAAGAAGGGGCAGTATAAACAAATTACGTATTCTACAGTGACGTTATTTAACTTATCGTGTACTTACAGAAGTACAATAGCAAAGAGACGATGTCTTTATTCGGATCGAACATCTATAAAGCGTTGATTAATTGATTAGGAACGCGGAGAACGTCAACTGCAGTTCGACCTCAAATCAAGCCTCGTGAGCCGCTTGTGATGCGGC
*******************************************************(((.((.((((..((((.((((...))))...)))).)))).)).))).....(((((...............))))).....******************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 GSM1528803
follicle cells		 V047
embryo
 SRR060672
9x160_females_carcasses_total
 SRR1106722
embryo_10-12h
 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 M061
embryo
 SRR060667
160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
 SRR060659
Argentina_testes_total
.......................CCAGGCTCCTCTTCCGCCT............................................................................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................CTGGTGAGCCGGTTGGGATG.... 20 3 15 0.67 10 4 1 0 0 0 0 0 0 2 1 1 1 0
.................................................................................................................................................................................................................................................................................................CTGGTGAGCCGGTTGTGAGG.... 20 3 6 0.50 3 0 0 0 0 1 0 1 1 0 0 0 0 0
......................................................................................................................................................................................................ATGTCATTTGTCGGATCGAAC.............................................................................................. 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........GGCGTGTGGTTACCC................................................................................................................................................................................................................................................................................................ 15 1 9 0.33 3 0 0 3 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................CTGGTGAGCCGCTTGGGAGG.... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................TCAAATCAAGACTCGTGCGAC.............. 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................CCAGGCTCCTCTTTCGCCTA.............................................................................................................................................................................................................................................................................. 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................AAGTCTCGTGACCCGCTTTT........ 20 3 17 0.12 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.............................................................CAATGGCAGCTCTAGAAGC......................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCTAGAAAGCGATGAGTA........................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12822:1123864-1124176 + dvi_2416 TGCCGGCTCGCCGCACACCCATGGGCCCGAGGTGAAGGCGGATGAATGCAGTTCGCCGGAGTTTACCGTTGAGATCCTCGACGAGCTGTCGGAGCTACAATAAACTA------TTT---T-----------------------------CTTCCCCGTCATATTTGTTTAATGCATAA-----------------------------------------------------GATGTC------------ACTGCAATAAA-TTGAA---TAG-----------CACATGA--ATGTCTTCAT-----------GTTATCGTTTCT---CTGCTACAGAAAT---A----AGCC--TA--G------CT-TG----TAGATATTT---CG--CAACTAATTAACTAATCCT--TG--CGCC-------TCTTGCAGTTGACGTCAAGCTGGAGTTTAGTTCGGAGCA---CTCGGCGAACACTACGCCG----
droMoj3 scaffold_6540:33764832-33765146 + TGCCGGCTCTCCCCACACCCATGGCCCAGAGGTGAAGGCCGACGAGTGTAGTTCGCCAGAGTTCACTGTAGAGATTCTTGATGAGCTGTCCGAGCTGCAATAGAATAATATTTAAT---A-----------------------------TTTGACACTCATCTTTGTTTA--GCCTAA-----------------------------------------------------G-----------------ACATCTATAAC-TGGAA---ATAAATGTATTTAGAC-ACATGAAAGTCTTCAT-----------GTTCTCGTTTCT---CTATCGCACGCATCCG-------TT--AA--A------CG-AG-----C-G----C---AT--TTACTAATCTTCTGCAC----TT--TCTA--------TTTTCAGTTGATGTCAAAGTGGAGCTCAGTTCGGAGGC---ATCAGCGACTCCTACGCCT----
droGri2 scaffold_15074:2703050-2703386 - TGCTGGCGCCCCACACACTCACGGGCCCGAGGTCAGGGCGGATGAGTGCAGCTCACCGGAATTCACTGTCGAGATCATGGACGACCTGTCCGAACTCCAATAATATT------CTC---T------------------------------------GTAGTCATTATGTAATGCGTAATAGTAATTATGCTGATCTCGCAGCAAAAGTTAAT---AAATTT-TAT----------------TTACTTCTATGCAAATCAA-TTCA--------ATGTTTACAAT--ACAT--AC---------------------------------------------AT---A----AGTT--TAGCAATTAAGTTTGCCCCCATCTATGTT---CT--TTGCTAATGCCAATTTC-TAACT--TTGA--------CTTTCAGTGCTGATTAAGCAGGAGATCAACACGGAGCC---CGCTTTCAACACAGGGGTC----
droWil2 scf2_1100000004943:16186028-16186347 - CGCTGGTGCTCCACATACCCATGGACCAGAAATGAAGACA---------GATACGTTGGATTTTTCCACGGATTTGTTGGAACATCTGGCCGAATTGCAGTAGTTCT------TTCGT-GTTACAGTCTGTGTTTTTTATGTCTCTCCCCTTGAATCTCA---TAGT--------------------------------------------------------------------TTAGCTT-----AATTCCAAATAAAATTTAC---CTAAATGTAATG----------------TGTCTATTGACTTAAAGTT--TGATTTGTTTTGTGTCT----AGTCTAAGTT--AA--AT--A------T--GC-----ATTTGATTTGCTC--TTACTAATTAACAATTTCATACT--TTA-TTCA---AATTACAGATGATGTAAAGCAGGAGC------------C---GA---------ATATGACG----
dp5 2:5688084-5688389 - AGCTGGATCGCCACACACTCATGGCCCGGAAGTG---------------AATTCGCTGGACCTTTCGGCCGACCTGCTGGATGATTTTCCCGAGTTGCAGTAGTCGT------CCATCGTT-----------------------------------------------------------------------------GAGCAGTAGCCAAACTTATAATT-TA-------------CGTCCTAGCTCTACTTAAATAAA-TCAAA---ACAAATTTAAATAACTATCGT--A-TCGTGTGTGCC-------AGTT--CGTTTTGCATATAGACT----AGTGCCTG----CC--AA--A------T--GT-----CTCTGTCT---CT--TCACTAACGTGGTATTC----TT--ATGATTCTACTTTCAGATATTGAGATTAAGCTGGAGC------------C---GCCAA---CCATAACGACA----
droPer2 scaffold_19:1416866-1417174 - AGCTGGATCGCCACACACTCATGGCCCGGAAGTG---------------AATTCGCTGGACCTTTCGGCCGACCTGCTGGATGATTTTCCCGAGTTGCAGTAGTCGT------CCATCGCT-----------------------------------------------------------------------------GAGCAGTAGCCAAACTTATAATT-TA-------------CGTCCTAGCTCTACTTAAATAAA-TCAAA---ACAAATTTAAATAACTATCGT--A-TCGTGCGTGCC-------AGTT--CGTTTTGCATATAGACT----AGTGCCTG----CC--AA--A------T--GT-----CTCTGTCT---CT--TCACTAACGTGGTATTC----TT--ATGATTCTACTTTCAGATATTGAGATTAAGCTGGAGC------------C---GCCAACCATAACGACACCG----
droAna3 scaffold_13340:23491783-23492030 + AGCTGGGGCACCGCACACCCACGGCCCAGAAGTC---------------AATTCAATGGATCTCGCAACAGACGTCCTAGACGAGTTTCCCGACTTGCAATAATCTC------ACT---C-----------------------------CTT-------------------------------------------------------------------------------------CCCTCTAGCTTAATTAAAATAAA-TTAAAAAATTAA----------ATCATAT--AACCATGTGT-----------GTT--AGTCTTGTAGATAGTGT----AATCT-------TAACTA------------ATCTTAATGTAATTT---CC--CAACTAATGTATCGATT--------TTTA-------ATTTACAGCGGAGATCAAGATGGAGT------------C---G----------------------
droBip1 scf7180000396395:496855-497101 + AGCTGGGTCGCCTCACACCCACGACCCAGAAGTG---------------AATTCGATGGATTTCTCCACAGACGTCTTCGACGACTTTCCCGATTTGCAATAATCCC------CCA---C-----------------------------CTT-------------------------------------------------------------------------------------CCCTCTAGCTTAAT-TAAATAAA-TCTAA-AATTAAA----------TCATTT--AACCATGTGT-----------GTT--AGTTCTGTAGCTAGTGT----AGTCA-------TAGCTA------------GTCTTAATTTAATTT---CC--CAACTAATCTATCGATA----TT--TTAA--------TTTACAGTGGAGATCAAAATGGAGC------------C---G----------------------
droKik1 scf7180000302461:316635-316937 - CTCTGGGGCTCCGCACACCCACGGCCCGGAGGTC---------------ACCTCGATAGATCTCACGGCGGACTTGCTTGACGAGTTCTCGGAGCTGCAGTAGGCTC------GCC---GC-----------------------------------------------------------------------------CACAAGCAACAAATTATATTATTTTATCC-CTAGACT-------TAACTTAAACTAAATAAA-TTAAA---CTAAATGTGTATGAAATATGT--AGTTATGCGT-----------GTT--CGTTTTGTACCTACTTT----AGTTCTTG----AA--AC--A------C--TC-----GTTAAATT---CC--TTACTAATGTCTTGTTT----CTATGTAA-------TCTTGCAGTTGAGATCAAAATGGAGG------------AGCAGTCGC------CCACGCCCGG--
droFic1 scf7180000454096:475492-475790 - TGCTGGGGCTCCGCACACCCACGGTCCGGAGGTC---------------AACTCCATGGACATTACGGCTGACTTGCTGGACGAGTTTCCAGAGCTGCAGTAGGCTC------TAC---TC-----------------------------------------------------------------------------GACTAGCAGATATT---CTATTT-TACGTTCTAGACTAGAGGCCTAGCTTAATCTAAATAAA-TTATA---CTAAATGTTTATAAAATATGT--AGTTATGCGT-----------GTT--CGTTTTGTACCTAGTCT----AGCTT-------TA---A--G------TC-AT-----C-TGAAAA---CCTAATACTAAAGTTTGATTT----CT--GTAT-T-----CTTTTTAGTTGAGATCAAAATGGAGC------------C---GTCTC------CGACACCT----
droEle1 scf7180000491104:1733139-1733434 - CGCTGGCGCTCCGCACACCCACGGTCCGGAGGTC---------------AACTCTATGGATCTGGCCGCTGACCTGTTGGACGAGTTTCCAGAGCTTCAGTAGGCTT-------GC---AC-----------------------------------------------------------------------------AGCAAGCAGCTAAT---CTATTT-TACTCTTTAGTCTTCAGTCCTAGCTTAATTATAATAAA-TTAAA---CGAAATGTGTGTAAAATATGT--ATTTGTCGGT-----------GTT--CGTTTTGTACCTAGTTT----AGCTT-------TA--CG--A------CC-A------TTTAAACG---CC--CTACTAATGTGTGACCT----TT--GTAA-------CTTTGCAGTTGAGATCAAAATGGAGC------------C---CTCAC------CCACGCCT----
droRho1 scf7180000767410:14933-15229 + CGCTGGAGCTCCGCACACACACAGTCCGGAGGTC---------------AACTCTATGGATCTCACGGCTGACCTGCTGGACGAGTTTCCGGAACTTCAGTAGGCCC------TGC---AC-----------------------------------------------------------------------------GACCAGCAACTAAT---CTATTT-TATTCAATAGACTACATCCCTAGCTTAATCTAAATAAA-TTAAA---CTTAATGTGTATAAAACATGT--AGTTATTAGT-----------GTT--CGTTTTGTACCTAGTCT----AGATT-------TA--AA--C------CC-A------TTTAAAAG---AC--GTACTAATTTGAGATTT----TT--GTAA-------TCTTGCAGTTGAGATTAAAATGGAGC------------C---TTCGC------CCACACCT----
droBia1 scf7180000302155:572940-573221 - CGCTGGCGCTCCGCACACCCATGGCCCGGAGGTC---------------AGCTCAGTGGATCTCTCGGCTGAACTGCTGGACGAGTTTCCGGAGCTGCAGTAGG----------------------------------------------------------------------------------------------------CAGCCAAT---CTAATT-AATCC-CTAGACTACAGACATAGACTAATTTAAATAAA-TTATA---CTAAATGTAAAAAAAATTTGT--AGTTATGCGT-----------GTT--CGTTTTACACCTAGTCT----AGCTT-------TA--AA--T------T--AC-----CTTAAACT---TT--CTACTAACATCTGGTAT----TT--GTAA-------TATTGCAGTTAAGATCAAAATGGAGC------------C---CTCGC------CCACGCCT----
droTak1 scf7180000415417:173492-173775 + CGCCGGCGCTCCGCACACCCACGGCCCGGAGGTC---------------AACTCAATGGATCTCACGGCTGACTTGCTGGACGAGTTTCCGGAGCTGCAGTAGG----------------------------------------------------------------------------------------------------CAGCCCAT---CTAATT-TACTACCTAGACTACAGACCTAGCTTAATCTAAATAAA-TTAAA---CTATATGTGTACACATTTTGT--AGTTATGCGT-----------GTT--CGTTTTGCAACTAGTTT----AGCTT-------TA--GA--A------T--TT----CTTTAGACT---CC--CTACTAATTAGTGATTT----TT--GTAA-------TCTTGCAGTTGAGATCAAAATGGAGC------------C---TTCGC------CCACGCCA----
droEug1 scf7180000409760:1221316-1221610 + CGCTGGCGCCCCGCACACTCACGGTCCGGAAGTC---------------AACTCGATGGATCTCACCACTGACCTGCTGGACGACTTTCCGGAGCTGCAGTAGGCTC------TTG---AA-----------------------------------------------------------------------------GATCAGCAGCTAAT---CTAATT-TATTCTTTAGACTACAAACCTAGCTTAATCTTAATAAA-CTAAA---CTA-ATAAGTATAAAATATAT--AGTTATGCGT-----------ATT--TGTTTTGTTCCTAGTCT----AGCTT-------TA--AA--A------TC-G------TTTAAGCT---TC--TTACTAATGTTTGATTT----C---TTAA-------TCTTGCAGTTAAGATAAAAATGGAGC------------C---TTCGC------CTACGCCT----
dm3 chr3R:17189571-17189871 - CGCTGGCACTCCGCACACCCACGCTCCGGAGGTC---------------AGCTCGATGGATCTCACGACTGACCTGCTGGACGAATTTCCGGAGCTGCAGTAAGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGCAGTTAAT---ATAATA-TACTC-ATCGATTTCAGCTCTACCTTAACATAAATAAA-TTAAA---TTAAATGTGCACATAATACGT--AATCA-GTGT-----------TCT--CGTTCTGTACCTACTATA--TAGTTG-------TT--AA--G------CA-TT-----C-TTAAAT---CC--CAACTAATCTGTTAATC----TT--TTCA-------TTTTGCAGTCAAGATCAAAATGGAGC------------C---TTCGC------CGACGCCTGGGC
droSim2 3r:4122048-4122347 + dsi_2519 CGCTGGCACTCCGCACACCCACGCTCCGGAGGTC---------------AGCTCGATGGATCTCACGACTGACCTGCTGGACGAATTTCCGGAGCTGCAGTAGGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGCAGTTAAT---ATAATA-TACTC-ATAGATTTCAGCTCTACCTTAACATAAATAAA-TTAAA---TTAAATGTGCACATAATACGT--AGTTATGAGT-----------GTTCTCGTTCTGTACCTACTATA--TAGTTG-------TT--AA--G------CC-TT-----C-TTAAAT---CC--CAACTAATCTGTTAATG----TT--TTCA-------TTTTGCAGTCAAGATCAAAATGGAGC------------C---TTCGC------CGACGCCT----
droSec2 scaffold_6:4300971-4301270 + CGCTGGCACTCCGCACACCCACGCTCCGGAGGTC---------------AGCTCGATGGATCTCACGACTGACCTGCTGGACGAATTTCCGGAGCTGCAGTAGGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGCAGTTAAT---ATAATA-TACTC-ATAGATTTCAGCTCTACCTTAACATAAATAAA-TTAAA---TTAAATGTGCACATAATACGT--AGTTATGAGT-----------GTTCTCGTTCTGTACCTACTATA--TAGTTG-------TT--AA--G------CC-TT-----C-TTAAAT---CC--CAACTAATCTGTTAATG----TT--TTCA-------TTTTGCAGTCAAGATCAAAATGGAGC------------C---TTCGC------CGACGCCT----
droYak3 v2_chrUn_4564:693-990 + CGCTGGCGCTCCGCACACTCATGGTCCGGAAGTC---------------AACTCGATGGATCTCACGACTGACTTGCTGGACGAATTCCCGGAGCTGCAGTAGGCTC------TGA---TC-----------------------------------------------------------------------------AACCAGCAGTTAAT---ATAATT-TACTC-ATAGATTTCAGCTCTACCTTAACCTAAATAAA-TTTAA---TGAAATGTGCACACAATATGT--AGTTATGCGT-----------GTTCTCGTTCTGTGCCTACTAT----AGTTT-------GC--TA--G------CC-TA-----C-TGAAAT---CC--CAACTAATCTGTTAATA----TT--TTCA-------TTTTGCAGTTAAGATCAAAATGGAGC------------C---TTCAC------CGACGCCT----
droEre2 scaffold_4770:4481772-4482070 + CGCTGGCGCTCCGCACACCCACGGTCCGGAGGTC---------------AACTCAATGGATCTCGCGACTGAACTGCTGGACGAATTTCCGGAGCTGCAATAGGCTC------TAT---AC-----------------------------------------------------------------------------GACCAGCAGTTAAT---ATAATT-TACTC-ATAGATTTCAGCTCTACCTTTACCCAAATAAA-TTAAA---TTAAATGTATACACAATATGT--AGTTATGCGT-----------GTTCTCGTTCTGTACCTACTAT----AGTTT-------GC--TA--G------CC-TA-----CTTAAAAT---CC--CAACTAATCTGTTAAAC----TT--TATA-------TTTTGCAGTTAAGATCAAAATGGAGC------------C---TTCGC------CGACGCCT----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGCCGGCTCGCCGCACACCCATGGGCCCGAGGTGAAGGCGGATGAATGCAGTTCGCCGGAGTTTACCGTTGAGATCCTCGACGAGCTGTCGGAGCTACAATAAACTA------TTT---T-----------------------------CTTCCCCGTCATATTTGTTTAATGCATAA-----------------------------------------------------GATGTC------------ACTGCAATAAA-TTGAA---TAG-----------CACATGA--ATGTCTTCAT-----------GTTATCGTTTCT---CTGCTACAGAAAT---A----AGCC--TA--G------CT-TG----TAGATATTT---CG--CAACTAATTAACTAATCCT--TG--CGCC-------TCTTGCAGTTGACGTCAAGCTGGAGTTTAGTTCGGAGCA---CTCGGCGAACACTACGCCG----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................GATGAATGCAGTTCGCCGGAGTTT............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TTAACTAATCCT--TG--CGCC-------TCTTGCAGT........................................................2711.001000000100000000000000000000000000000000000000000000000000000000
...........................................GAATGCAGTTCGCCGGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGACGTCAAGCTGGAGTTTAGTT.................................2511.001000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGAGCA---CTCGGCGAACACTACGC......2511.001000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................................................................................................TCTTCAT-----------GTTATCGTTTCT---CT..................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................ACTAATTAACTAATCCT--TG--CGCC-------TCT..............................................................2611.001000000000000000000000000001000000000000000000000000000000000000
................................TGAAGGCGGATGAATGCAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CTAATTAACTAATCCT--TG--CGCC-------TCTTGC...........................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.............................AGGTGAAGGCGGATGAATGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
droMoj3
TGCCGGCTCTCCCCACACCCATGGCCCAGAGGTGAAGGCCGACGAGTGTAGTTCGCCAGAGTTCACTGTAGAGATTCTTGATGAGCTGTCCGAGCTGCAATAGAATAATATTTAAT---A-----------------------------TTTGACACTCATCTTTGTTTA--GCCTAA-----------------------------------------------------G-----------------ACATCTATAAC-TGGAA---ATAAATGTATTTAGAC-ACATGAAAGTCTTCAT-----------GTTCTCGTTTCT---CTATCGCACGCATCCG-------TT--AA--A------CG-AG-----C-G----C---AT--TTACTAATCTTCTGCAC----TT--TCTA--------TTTTCAGTTGATGTCAAAGTGGAGCTCAGTTCGGAGGC---ATCAGCGACTCCTACGCCT----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAGGC---ATCAGCGACTCCTACGCC.....2711.001100000
droGri2
TGCTGGCGCCCCACACACTCACGGGCCCGAGGTCAGGGCGGATGAGTGCAGCTCACCGGAATTCACTGTCGAGATCATGGACGACCTGTCCGAACTCCAATAATATT------CTC---T------------------------------------GTAGTCATTATGTAATGCGTAATAGTAATTATGCTGATCTCGCAGCAAAAGTTAAT---AAATTT-TAT----------------TTACTTCTATGCAAATCAA-TTCA--------ATGTTTACAAT--ACAT--AC---------------------------------------------AT---A----AGTT--TAGCAATTAAGTTTGCCCCCATCTATGTT---CT--TTGCTAATGCCAATTTC-TAACT--TTGA--------CTTTCAGTGCTGATTAAGCAGGAGATCAACACGGAGCC---CGCTTTCAACACAGGGGTC----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CGCTGGTGCTCCACATACCCATGGACCAGAAATGAAGACA---------GATACGTTGGATTTTTCCACGGATTTGTTGGAACATCTGGCCGAATTGCAGTAGTTCT------TTCGT-GTTACAGTCTGTGTTTTTTATGTCTCTCCCCTTGAATCTCA---TAGT--------------------------------------------------------------------TTAGCTT-----AATTCCAAATAAAATTTAC---CTAAATGTAATG----------------TGTCTATTGACTTAAAGTT--TGATTTGTTTTGTGTCT----AGTCTAAGTT--AA--AT--A------T--GC-----ATTTGATTTGCTC--TTACTAATTAACAATTTCATACT--TTA-TTCA---AATTACAGATGATGTAAAGCAGGAGC------------C---GA---------ATATGACG----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................ATGGACCAGAAATGAAGAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000
..........................................................GATTTTTCCACGGATTTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.........................................................................................................CT------TTCGT-GTTACAGTCTGTG........................................................................................................................................................................................................................................................................................................................................................................2011.00100010
............................GAAATGAAGACA---------GATACGTTGGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
dp5
AGCTGGATCGCCACACACTCATGGCCCGGAAGTG---------------AATTCGCTGGACCTTTCGGCCGACCTGCTGGATGATTTTCCCGAGTTGCAGTAGTCGT------CCATCGTT-----------------------------------------------------------------------------GAGCAGTAGCCAAACTTATAATT-TA-------------CGTCCTAGCTCTACTTAAATAAA-TCAAA---ACAAATTTAAATAACTATCGT--A-TCGTGTGTGCC-------AGTT--CGTTTTGCATATAGACT----AGTGCCTG----CC--AA--A------T--GT-----CTCTGTCT---CT--TCACTAACGTGGTATTC----TT--ATGATTCTACTTTCAGATATTGAGATTAAGCTGGAGC------------C---GCCAA---CCATAACGACA----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................AATTCGCTGGACCTTTCGGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................TCCCGAGTTGCAGTAGTCGT------CCA........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010000
droPer2
AGCTGGATCGCCACACACTCATGGCCCGGAAGTG---------------AATTCGCTGGACCTTTCGGCCGACCTGCTGGATGATTTTCCCGAGTTGCAGTAGTCGT------CCATCGCT-----------------------------------------------------------------------------GAGCAGTAGCCAAACTTATAATT-TA-------------CGTCCTAGCTCTACTTAAATAAA-TCAAA---ACAAATTTAAATAACTATCGT--A-TCGTGCGTGCC-------AGTT--CGTTTTGCATATAGACT----AGTGCCTG----CC--AA--A------T--GT-----CTCTGTCT---CT--TCACTAACGTGGTATTC----TT--ATGATTCTACTTTCAGATATTGAGATTAAGCTGGAGC------------C---GCCAACCATAACGACACCG----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................AACGTGGTATTC----TT--ATGATTCTACTT................................................................2611.001010000
droAna3
AGCTGGGGCACCGCACACCCACGGCCCAGAAGTC---------------AATTCAATGGATCTCGCAACAGACGTCCTAGACGAGTTTCCCGACTTGCAATAATCTC------ACT---C-----------------------------CTT-------------------------------------------------------------------------------------CCCTCTAGCTTAATTAAAATAAA-TTAAAAAATTAA----------ATCATAT--AACCATGTGT-----------GTT--AGTCTTGTAGATAGTGT----AATCT-------TAACTA------------ATCTTAATGTAATTT---CC--CAACTAATGTATCGATT--------TTTA-------ATTTACAGCGGAGATCAAGATGGAGT------------C---G----------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGAGATCAAGATGGAGT------------...........................2111.001000010
.................................................................CAACAGACGTCCTAGACGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCGGAGATCAAGATGGA.........................................2111.001000010
..........................................................................TCCTAGACGAGTTTCCCGAC..............................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
AGCTGGGTCGCCTCACACCCACGACCCAGAAGTG---------------AATTCGATGGATTTCTCCACAGACGTCTTCGACGACTTTCCCGATTTGCAATAATCCC------CCA---C-----------------------------CTT-------------------------------------------------------------------------------------CCCTCTAGCTTAAT-TAAATAAA-TCTAA-AATTAAA----------TCATTT--AACCATGTGT-----------GTT--AGTTCTGTAGCTAGTGT----AGTCA-------TAGCTA------------GTCTTAATTTAATTT---CC--CAACTAATCTATCGATA----TT--TTAA--------TTTACAGTGGAGATCAAAATGGAGC------------C---G----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CTCTGGGGCTCCGCACACCCACGGCCCGGAGGTC---------------ACCTCGATAGATCTCACGGCGGACTTGCTTGACGAGTTCTCGGAGCTGCAGTAGGCTC------GCC---GC-----------------------------------------------------------------------------CACAAGCAACAAATTATATTATTTTATCC-CTAGACT-------TAACTTAAACTAAATAAA-TTAAA---CTAAATGTGTATGAAATATGT--AGTTATGCGT-----------GTT--CGTTTTGTACCTACTTT----AGTTCTTG----AA--AC--A------C--TC-----GTTAAATT---CC--TTACTAATGTCTTGTTT----CTATGTAA-------TCTTGCAGTTGAGATCAAAATGGAGG------------AGCAGTCGC------CCACGCCCGG--SizeHit CountTotal NormTotal
No Reads
droFic1
TGCTGGGGCTCCGCACACCCACGGTCCGGAGGTC---------------AACTCCATGGACATTACGGCTGACTTGCTGGACGAGTTTCCAGAGCTGCAGTAGGCTC------TAC---TC-----------------------------------------------------------------------------GACTAGCAGATATT---CTATTT-TACGTTCTAGACTAGAGGCCTAGCTTAATCTAAATAAA-TTATA---CTAAATGTTTATAAAATATGT--AGTTATGCGT-----------GTT--CGTTTTGTACCTAGTCT----AGCTT-------TA---A--G------TC-AT-----C-TGAAAA---CCTAATACTAAAGTTTGATTT----CT--GTAT-T-----CTTTTTAGTTGAGATCAAAATGGAGC------------C---GTCTC------CGACACCT----SizeHit CountTotal NormTotal
No Reads
droEle1
CGCTGGCGCTCCGCACACCCACGGTCCGGAGGTC---------------AACTCTATGGATCTGGCCGCTGACCTGTTGGACGAGTTTCCAGAGCTTCAGTAGGCTT-------GC---AC-----------------------------------------------------------------------------AGCAAGCAGCTAAT---CTATTT-TACTCTTTAGTCTTCAGTCCTAGCTTAATTATAATAAA-TTAAA---CGAAATGTGTGTAAAATATGT--ATTTGTCGGT-----------GTT--CGTTTTGTACCTAGTTT----AGCTT-------TA--CG--A------CC-A------TTTAAACG---CC--CTACTAATGTGTGACCT----TT--GTAA-------CTTTGCAGTTGAGATCAAAATGGAGC------------C---CTCAC------CCACGCCT----SizeHit CountTotal NormTotal
No Reads
droRho1
CGCTGGAGCTCCGCACACACACAGTCCGGAGGTC---------------AACTCTATGGATCTCACGGCTGACCTGCTGGACGAGTTTCCGGAACTTCAGTAGGCCC------TGC---AC-----------------------------------------------------------------------------GACCAGCAACTAAT---CTATTT-TATTCAATAGACTACATCCCTAGCTTAATCTAAATAAA-TTAAA---CTTAATGTGTATAAAACATGT--AGTTATTAGT-----------GTT--CGTTTTGTACCTAGTCT----AGATT-------TA--AA--C------CC-A------TTTAAAAG---AC--GTACTAATTTGAGATTT----TT--GTAA-------TCTTGCAGTTGAGATTAAAATGGAGC------------C---TTCGC------CCACACCT----SizeHit CountTotal NormTotal
No Reads
droBia1
CGCTGGCGCTCCGCACACCCATGGCCCGGAGGTC---------------AGCTCAGTGGATCTCTCGGCTGAACTGCTGGACGAGTTTCCGGAGCTGCAGTAGG----------------------------------------------------------------------------------------------------CAGCCAAT---CTAATT-AATCC-CTAGACTACAGACATAGACTAATTTAAATAAA-TTATA---CTAAATGTAAAAAAAATTTGT--AGTTATGCGT-----------GTT--CGTTTTACACCTAGTCT----AGCTT-------TA--AA--T------T--AC-----CTTAAACT---TT--CTACTAACATCTGGTAT----TT--GTAA-------TATTGCAGTTAAGATCAAAATGGAGC------------C---CTCGC------CCACGCCT----SizeHit CountTotal NormTotal
No Reads
droTak1
CGCCGGCGCTCCGCACACCCACGGCCCGGAGGTC---------------AACTCAATGGATCTCACGGCTGACTTGCTGGACGAGTTTCCGGAGCTGCAGTAGG----------------------------------------------------------------------------------------------------CAGCCCAT---CTAATT-TACTACCTAGACTACAGACCTAGCTTAATCTAAATAAA-TTAAA---CTATATGTGTACACATTTTGT--AGTTATGCGT-----------GTT--CGTTTTGCAACTAGTTT----AGCTT-------TA--GA--A------T--TT----CTTTAGACT---CC--CTACTAATTAGTGATTT----TT--GTAA-------TCTTGCAGTTGAGATCAAAATGGAGC------------C---TTCGC------CCACGCCA----SizeHit CountTotal NormTotal
No Reads
droEug1
CGCTGGCGCCCCGCACACTCACGGTCCGGAAGTC---------------AACTCGATGGATCTCACCACTGACCTGCTGGACGACTTTCCGGAGCTGCAGTAGGCTC------TTG---AA-----------------------------------------------------------------------------GATCAGCAGCTAAT---CTAATT-TATTCTTTAGACTACAAACCTAGCTTAATCTTAATAAA-CTAAA---CTA-ATAAGTATAAAATATAT--AGTTATGCGT-----------ATT--TGTTTTGTTCCTAGTCT----AGCTT-------TA--AA--A------TC-G------TTTAAGCT---TC--TTACTAATGTTTGATTT----C---TTAA-------TCTTGCAGTTAAGATAAAAATGGAGC------------C---TTCGC------CTACGCCT----SizeHit CountTotal NormTotal
No Reads
dm3
CGCTGGCACTCCGCACACCCACGCTCCGGAGGTC---------------AGCTCGATGGATCTCACGACTGACCTGCTGGACGAATTTCCGGAGCTGCAGTAAGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGCAGTTAAT---ATAATA-TACTC-ATCGATTTCAGCTCTACCTTAACATAAATAAA-TTAAA---TTAAATGTGCACATAATACGT--AATCA-GTGT-----------TCT--CGTTCTGTACCTACTATA--TAGTTG-------TT--AA--G------CA-TT-----C-TTAAAT---CC--CAACTAATCTGTTAATC----TT--TTCA-------TTTTGCAGTCAAGATCAAAATGGAGC------------C---TTCGC------CGACGCCTGGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................CAGTAAGCTC------CGG---AG-----------------------------------------------------------------------------GACCAG................................................................................................................................................................................................................................................................................................21111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCAAGATCAAAATGGAGC------------C---TT.....................2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CTC------CGG---AG-----------------------------------------------------------------------------GACCAGCAG.............................................................................................................................................................................................................................................................................................1717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCAAGATCAAAATGGAGC------------...........................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...................CACGCTCCGGAGGTC---------------AGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGTCAAGATCAAAATGGAGC------------C---.......................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGATCAAAATGGAGC------------C---.......................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGC------------C---TTCGC------CGACGCCTGG..2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.............................................................................TGGACGAATTTCCGGAGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TTTCCGGAGCTGCAGTAAGCT..................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGC------------C---TTCGC------CGACGCCTGG..2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TACTC-ATCGATTTCAGCTCTA........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ACGCTCCGGAGGTC---------------AGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
..................................................................................GAATTTCCGGAGCTGCAGTAA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TGCAGTAAGCTC------CGG---AG-----------------------------------------------------------------------------GACCAG................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAATGGAGC------------C---TTCGC------CGACGCT.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GATGGATCTCACGACTGACCTGCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TGCAGTAAGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGCAGT............................................................................................................................................................................................................................................................................................2711.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGTCAAGATCAAAATGGAGC------------C---T......................2711.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................ATAAA-TTAAA---TTAAATGTGCAA...................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCACACCCACGCTCCGGAGGTC---------------AGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATC----TT--TTCA-------TTTTGCAG.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TCT--CGTTCTGTACCTACTATA--..........................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................GACTGACCTGCTGGACGAATTT....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGTCAAGATCAAAATGGAGC------------C---.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TCACGACTGACCTGCTGGACGA........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TCACGACTGACCTGCTGGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................CGATGGATCTCACGACTGACCTGCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGTCAAGATCAAAATGGAGC------------...........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............CACACCCACGCTCCGGAGGTC---------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................T--TTCA-------TTTTGCAGTCAAGATC.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TAAT---ATAATA-TACTC-ATCGATTTCAGC............................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CGACTGACCTGCTGGACGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CTC-ATCGATTTCAGCTCTACCTTAACA................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TTCAGCTCTACCTTAACATAAATAAA-T......................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................CTGACCTGCTGGACGAATTTCCGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AAGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGCA..............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GTC---------------AGCTCGATGGATCTCACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........................................................ATCTCACGACTGACCTGCTGG............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ATACGT--AATCA-GTGT-----------TCT--CGTTCTG.......................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA-------TTTTGCAGTCAAGATCAAA..............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............CACCCACGCTCCGGAGGTC---------------AG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CTGTACCTACTATA--TAGTTG-------T............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................CTCGATGGATCTCACGACTGACCTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGAGC------------C---TTCGC------CGACG.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................CGCTCCGGAGGTC---------------AGCTCGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA-------TTTTGCAGTCAAGATCA................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TGCAGTAAGCTC------CGG---AG-----------------------------------------------------------------------------GACC..................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GATCTCACGACTGACCTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................ACCTGCTGGACGAATTTCCGG................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ACGACTGACCTGCTGGACGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...................................................................................................GTAAGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGCA..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................AAT---ATAATA-TACTC-ATCGATT.................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAAATGGAGC------------C---TTCGC------............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................GGACGAATTTCCGGAGCTGCAGT.......................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................AGCTGCAGTAAGCTC------CGG---AG-----------------------------------------------------------------------------G.....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................CTGCAGTAAGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGC...............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................CT--CGTTCTGTACCTACTATA--T.........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
CGCTGGCACTCCGCACACCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AGCTCGATGGATCTCACGACTGACCTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ATTTCCGGAGCTGCAGTAAGC...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGAGC------------C---TTCGC------CGACGC......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................................................................................................................................................................................................................TGTACCTACTATA--TAGTTG-------T............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................AGTAAGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGC...............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CTACTATA--TAGTTG-------TT--AA--G------CA-...........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................ACTATA--TAGTTG-------TT--AA--G------CA-TT-----....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AATA-TACTC-ATCGATTTCAGCTCTACC......................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................T---CC--CAACTAATCTGTTAATC----TT--TTCA-------.................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACTCCGCACACCCACGCTCCGGAGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GCTGGACGAATTTCCGGAGCT............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGATCAAAATGGAGC------------C---TTCGC------C...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................TCTCACGACTGACCTGCTGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CCGGAGGTC---------------AGCTCGATGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AAA---TTAAATGTGCACATAATACGT--........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
droSim2
CGCTGGCACTCCGCACACCCACGCTCCGGAGGTC---------------AGCTCGATGGATCTCACGACTGACCTGCTGGACGAATTTCCGGAGCTGCAGTAGGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGCAGTTAAT---ATAATA-TACTC-ATAGATTTCAGCTCTACCTTAACATAAATAAA-TTAAA---TTAAATGTGCACATAATACGT--AGTTATGAGT-----------GTTCTCGTTCTGTACCTACTATA--TAGTTG-------TT--AA--G------CC-TT-----C-TTAAAT---CC--CAACTAATCTGTTAATG----TT--TTCA-------TTTTGCAGTCAAGATCAAAATGGAGC------------C---TTCGC------CGACGCCT----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................AGGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGC...............................................................................................................................................................................................................................................................................................1811.00100000000001000000
droSec2
CGCTGGCACTCCGCACACCCACGCTCCGGAGGTC---------------AGCTCGATGGATCTCACGACTGACCTGCTGGACGAATTTCCGGAGCTGCAGTAGGCTC------CGG---AG-----------------------------------------------------------------------------GACCAGCAGTTAAT---ATAATA-TACTC-ATAGATTTCAGCTCTACCTTAACATAAATAAA-TTAAA---TTAAATGTGCACATAATACGT--AGTTATGAGT-----------GTTCTCGTTCTGTACCTACTATA--TAGTTG-------TT--AA--G------CC-TT-----C-TTAAAT---CC--CAACTAATCTGTTAATG----TT--TTCA-------TTTTGCAGTCAAGATCAAAATGGAGC------------C---TTCGC------CGACGCCT----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................TTTCCGGAGCTGCAGTAGGCT..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
................................................................ACGACTGACCTGCTGGACGA........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
droYak3
CGCTGGCGCTCCGCACACTCATGGTCCGGAAGTC---------------AACTCGATGGATCTCACGACTGACTTGCTGGACGAATTCCCGGAGCTGCAGTAGGCTC------TGA---TC-----------------------------------------------------------------------------AACCAGCAGTTAAT---ATAATT-TACTC-ATAGATTTCAGCTCTACCTTAACCTAAATAAA-TTTAA---TGAAATGTGCACACAATATGT--AGTTATGCGT-----------GTTCTCGTTCTGTGCCTACTAT----AGTTT-------GC--TA--G------CC-TA-----C-TGAAAT---CC--CAACTAATCTGTTAATA----TT--TTCA-------TTTTGCAGTTAAGATCAAAATGGAGC------------C---TTCAC------CGACGCCT----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................GATGGATCTCACGACTGACTTGCTGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................2723.50700000000007
....................................................................................ATTCCCGGAGCTGCAGTAGGC...................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010000000
.................................................................................CGAATTCCCGGAGCTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................1820.50110000000000
droEre2
CGCTGGCGCTCCGCACACCCACGGTCCGGAGGTC---------------AACTCAATGGATCTCGCGACTGAACTGCTGGACGAATTTCCGGAGCTGCAATAGGCTC------TAT---AC-----------------------------------------------------------------------------GACCAGCAGTTAAT---ATAATT-TACTC-ATAGATTTCAGCTCTACCTTTACCCAAATAAA-TTAAA---TTAAATGTATACACAATATGT--AGTTATGCGT-----------GTTCTCGTTCTGTACCTACTAT----AGTTT-------GC--TA--G------CC-TA-----CTTAAAAT---CC--CAACTAATCTGTTAAAC----TT--TATA-------TTTTGCAGTTAAGATCAAAATGGAGC------------C---TTCGC------CGACGCCT----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 04:32 AM