ID:

dvi_228

 Coordinate:

scaffold_13045:1014487-1014579 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.5 -40.3 -40.2 -40.2

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. scaffold_9493:796-819 -
  2. scaffold_10308:3099-3122 -
  3. scaffold_12528:196341-196364 -
  4. scaffold_12735:41229-41252 -
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  9. scaffold_12875:6791403-6791426 -
  10. scaffold_12875:8762869-8762892 -
  11. scaffold_12882:4426-4449 -
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  21. scaffold_8707:1321-1344 +
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  32. scaffold_12958:1629782-1629805 +
  33. scaffold_13036:367613-367636 +
  34. scaffold_13045:997347-997370 +
  35. dvi_226  scaffold_13045:1027330-1027353 +
  36. dvi_227  scaffold_13045:1034284-1034307 +
  37. scaffold_13045:1902089-1902112 +
  38. scaffold_13045:2135704-2135727 +
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  41. scaffold_477:763-786 +
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  45. scaffold_10004:1419-1442 +
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  59. scaffold_13324:257314-257337 +
  60. scaffold_13324:1688052-1688075 +
  61. scaffold_10602:582-605 -
  62. scaffold_10276:163-186 +
  63. scaffold_12321:7251-7274 +
  64. scaffold_12413:3746-3769 +
  65. scaffold_12799:19666-19689 +
  66. scaffold_12875:7720496-7720519 +
  67. scaffold_12883:4214-4237 +
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  76. scaffold_13045:2225345-2225368 +
  77. scaffold_13047:2334931-2334954 +
  78. scaffold_13047:7533166-7533189 +
  79. scaffold_13050:459182-459205 +
  80. scaffold_13050:3091556-3091579 +
  81. scaffold_13324:1595362-1595385 +
  82. scaffold_204:1427-1450 -
  83. scaffold_458:1351-1374 -
  84. scaffold_9810:321-344 -
  85. scaffold_9810:4737-4760 -
  86. scaffold_12100:4832-4855 -
  87. scaffold_12368:2248-2271 -
  88. scaffold_12728:509282-509305 -
  89. scaffold_12736:322543-322566 -
  90. scaffold_12941:441540-441563 -
  91. scaffold_12954:396849-396872 -
  92. dvi_344  scaffold_12954:416999-417022 -
  93. scaffold_12958:1200552-1200575 -
  94. scaffold_12958:3110720-3110743 -
  95. scaffold_13036:639856-639879 -
  96. scaffold_13045:176040-176063 -
  97. scaffold_13045:238619-238642 -
  98. dvi_228  scaffold_13045:1014556-1014579 -
  99. scaffold_13045:1081078-1081101 -
  100. scaffold_13050:1355220-1355243 -
  101. scaffold_13324:642938-642961 -
  102. scaffold_8507:974-997 -
  103. scaffold_9094:652-675 -
  104. scaffold_12728:175218-175241 -
  105. scaffold_12728:177327-177350 -
  106. scaffold_12735:228827-228850 -
  107. scaffold_12736:514379-514402 -
  108. scaffold_12777:4018-4041 -
  109. scaffold_12790:88316-88339 -
  110. scaffold_12800:267327-267350 -
  111. scaffold_12891:361485-361508 -
  112. scaffold_12958:138073-138096 -
  113. scaffold_12958:1337077-1337100 -
  114. scaffold_12958:1954978-1955001 -
  115. scaffold_12967:111614-111637 -
  116. scaffold_12970:828450-828473 -
  117. scaffold_13036:580069-580092 -
  118. scaffold_13050:267943-267966 -
  119. scaffold_13050:886265-886288 -
  120. scaffold_13050:3178547-3178570 -
  121. scaffold_13052:1696285-1696308 -
  122. scaffold_9539:3431-3454 +
  123. scaffold_12601:2649-2672 +
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  125. scaffold_12941:666812-666835 +
  126. scaffold_12945:107960-107983 +
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  128. scaffold_9353:5793-5816 +
  129. scaffold_9681:1044-1067 +
  130. scaffold_10419:24338-24361 +
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  142. scaffold_5687:192-215 -
  143. scaffold_7131:748-771 -
  144. scaffold_8606:490-513 -
  145. scaffold_9011:408-431 -
  146. scaffold_10324:362086-362109 -
  147. scaffold_12028:169-192 -
  148. scaffold_12149:4333-4356 -
  149. scaffold_12270:3347-3370 -
  150. scaffold_12847:163554-163577 -
  151. scaffold_12855:10124509-10124532 -
  152. scaffold_12875:10072871-10072894 -
  153. scaffold_12893:621-644 -
  154. scaffold_12929:119918-119941 -
  155. scaffold_12929:534017-534040 -
  156. scaffold_12954:1171519-1171542 -
  157. scaffold_13324:1649689-1649712 -
  158. scaffold_12958:3027428-3027451 -
  159. scaffold_12966:159364-159387 -
  160. scaffold_12728:530668-530691 -
  161. scaffold_169:740-763 -
  162. scaffold_403:355-378 -
  163. scaffold_12717:6576-6599 -
  164. scaffold_12734:227684-227707 -
  165. scaffold_12815:401899-401922 -
  166. scaffold_12963:6719608-6719631 -
  167. scaffold_12963:13106243-13106266 -
  168. scaffold_12963:20083754-20083777 -
  169. scaffold_12970:4033269-4033292 -
  170. scaffold_13049:11934035-11934058 -
  171. scaffold_12728:514963-514986 -
  172. scaffold_12728:525725-525748 -
star
  1. scaffold_338:165-189 -
  2. scaffold_450:76-100 -
  3. scaffold_12270:3191-3215 -
  4. scaffold_12528:196185-196209 -
  5. scaffold_12799:466737-466761 -
  6. scaffold_12800:267171-267195 -
  7. scaffold_12920:35880-35904 -
  8. scaffold_12929:510950-510974 -
  9. scaffold_12941:441384-441408 -
  10. scaffold_12947:64651-64675 -
  11. scaffold_12954:396693-396717 -
  12. scaffold_12954:743050-743074 -
  13. scaffold_12958:137917-137941 -
  14. scaffold_12967:111458-111482 -
  15. scaffold_12967:588696-588720 -
  16. scaffold_13036:579913-579937 -
  17. dvi_228  scaffold_13045:1014489-1014513 -
  18. scaffold_13045:1081011-1081035 -
  19. scaffold_13077:1509-1533 -
  20. scaffold_13302:3263-3287 -
  21. scaffold_12736:514223-514247 -
  22. scaffold_12855:10110339-10110363 -
  23. scaffold_12958:1336921-1336945 -
  24. scaffold_12958:3027271-3027295 -
  25. scaffold_13324:1500609-1500633 -
  26. scaffold_9859:7772-7796 +
  27. scaffold_9891:9134-9158 +
  28. scaffold_12272:77305-77329 +
  29. scaffold_12272:87621-87645 +
  30. scaffold_12736:593714-593738 +
  31. scaffold_12898:43012-43036 +
  32. scaffold_12947:79155-79179 +
  33. scaffold_12954:1339496-1339520 +
  34. scaffold_12958:789058-789082 +
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  36. scaffold_12967:379242-379266 +
  37. scaffold_13036:367768-367792 +
  38. scaffold_13036:984322-984346 +
  39. dvi_226  scaffold_13045:1027396-1027420 +
  40. dvi_227  scaffold_13045:1034350-1034374 +
  41. scaffold_13050:44383-44407 +
  42. scaffold_13050:1027650-1027674 +
  43. scaffold_13050:1101969-1101993 +
  44. scaffold_13324:1872125-1872149 +
  45. scaffold_13324:2285909-2285933 +
  46. scaffold_10118:1217-1241 +
  47. scaffold_12790:156813-156837 +
  48. scaffold_12790:161327-161351 +
  49. scaffold_12954:1718921-1718945 +
  50. scaffold_12954:1738022-1738046 +
  51. scaffold_12954:1747125-1747149 +
  52. scaffold_13052:1175806-1175830 +
  53. scaffold_12958:1629937-1629961 +
  54. scaffold_12736:553659-553683 +
  55. scaffold_13045:1855682-1855706 +
  56. scaffold_13045:1074386-1074410 -

Sense Strand Reads

ATCAGGTACAGGCTCTACTGGGACTAGTACAGGGGTTGAAACCGGGGTATTTGGACAGTCGCTTGGAGAAGGCGAGTTGAGGCTCCAACCGGCGATTGGTTGGGGACTCGAATTTATATTTGCCAAGCAACTCGAAACTCGAGTCAAAATTACTCGACAGCTGCTTAGCCACGTTATTTAATTTTAAGAATTG
***********************************.(((.((..((((.((((...(((.((((((..((......(((((.(((((((((.....))))))))).))))).......))..)))))).)))))))))))..)).........)))************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060662
9x160_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060658
140_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060673
9_ovaries_total
 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060670
9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060689
160x9_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060655
9x160_testes_total
 SRR060657
140_testes_total
 SRR060678
9x140_testes_total
 M061
embryo
 M027
male body		 SRR060663
160_0-2h_embryos_total
 SRR060681
Argx9_testes_total
 SRR060672
9x160_females_carcasses_total
 GSM1528803
follicle cells		 V116
male body		 SRR060679
140x9_testes_total
 SRR060683
160_testes_total
 V047
embryo
 SRR060661
160x9_0-2h_embryos_total
 SRR1106719
embryo_8-10h
 SRR1106720
embryo_8-10h
 SRR1106725
embryo_14-16h
 SRR1106729
mixed whole adult body
 SRR1106730
embryo_16-30h
...............................................TATTTGGACAGTCGCTTGGAGAAGGC........................................................................................................................ 26 0 4 24.25 97 33 9 0 10 12 6 9 3 4 5 0 1 1 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAAGG......................................................................................................................... 25 0 4 22.25 89 22 10 1 10 12 9 11 3 6 1 0 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGAAGGCG....................................................................................................................... 24 0 20 16.65 333 0 0 327 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACTCG.................................................... 25 0 20 12.15 243 0 55 0 101 0 0 0 0 0 34 40 0 0 0 0 0 0 0 0 0 0 0 0 4 0 3 0 0 0 0 1 0 2 3 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAAGGCG....................................................................................................................... 27 0 4 10.75 43 6 6 0 1 5 5 9 0 5 1 0 0 2 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACTCGA................................................... 26 0 20 8.45 169 0 0 0 0 0 62 0 0 0 0 0 35 8 0 39 20 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................TATTTGGACAGTCGCTTGGAGAAG.......................................................................................................................... 24 0 4 7.25 29 4 2 0 4 2 1 6 3 3 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCTTAGCCACGTTATTTAATTTTAAGAA... 28 0 1 7.00 7 0 0 0 2 2 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACTCGAG.................................................. 27 0 20 5.15 103 3 96 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAA........................................................................................................................... 23 0 4 3.75 15 1 2 0 4 1 1 0 0 0 0 0 0 4 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCTTAGCCACGTTATTTAATTTTAAGA.... 27 0 1 3.00 3 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGA............................................................................................................................ 22 0 4 1.75 7 1 0 0 1 1 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAAGGCGAG..................................................................................................................... 29 0 4 1.50 6 0 0 0 1 1 0 0 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACTC..................................................... 24 0 20 1.20 24 0 9 0 0 0 0 0 0 0 0 0 0 7 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCTTAGCCACGTTATTTAATTTTAAGCA... 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATTTGCCAAGCAACTCGAAACTCGA................................................... 25 0 20 0.80 16 0 0 0 0 0 0 0 0 0 0 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGACAAGGCGAGT.................................................................................................................... 27 1 4 0.75 3 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGATTGGAGAAGGC........................................................................................................................ 26 1 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCTACTGGGACTAGTACAGGGGTTGA.......................................................................................................................................................... 26 0 20 0.65 13 0 0 0 0 0 0 2 0 0 0 4 0 0 0 1 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACTCGAA.................................................. 27 1 20 0.55 11 0 3 0 0 0 0 0 2 0 0 5 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ATCAGGTACAGGCTCTACTGGGACTA....................................................................................................................................................................... 26 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TATAGGGGTTGAAATCGTGGTATT.............................................................................................................................................. 24 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAAGGCGT...................................................................................................................... 28 1 4 0.50 2 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCTACTGGGACTAGTACAGGGGTTG........................................................................................................................................................... 25 0 20 0.50 10 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 6 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TTTGGACAGTCGCTTGGAGAAGGC........................................................................................................................ 24 0 4 0.50 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGAAGGCGAGT.................................................................................................................... 27 0 4 0.50 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GGGTTGAAATCGTGGTATTT............................................................................................................................................. 20 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGA.............................................................................................................................. 20 0 4 0.50 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CGAAACTCGAGTCAAAACTACTCGACAGC................................ 29 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GCTTAGCCACGTTATTTAATTTTA....... 24 0 4 0.50 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAATGC........................................................................................................................ 26 1 4 0.50 2 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCTACTGGGACTAGTACAGGGGTTGAA......................................................................................................................................................... 27 0 20 0.45 9 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGAAGG......................................................................................................................... 22 0 20 0.45 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACT...................................................... 23 0 20 0.35 7 0 3 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................GTTATTTAATTTTAAGAA... 18 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................ATTCCTCGACATCTACTTAGC........................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................GGGGTTGAAATCGTGGTATTTT............................................................................................................................................ 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................ACCGGGGTATTTGGACAGTCGCTTGG............................................................................................................................... 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATTTGCCAAGCAACTCGAAACTCGAG.................................................. 26 0 20 0.30 6 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAAGGCC....................................................................................................................... 27 1 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACATTCGCTTGGAGAAGG......................................................................................................................... 25 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAATCAACTCGAAACTCGAG.................................................. 27 1 20 0.25 5 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGCGAAGGC........................................................................................................................ 26 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACGGTCGCTTGGAGAAGGCG....................................................................................................................... 27 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GAAACCGGGGTCTTCGGAGA........................................................................................................................................ 20 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAGCTCG.................................................... 25 1 20 0.25 5 0 0 0 0 3 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGACGGC........................................................................................................................ 26 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTTGACAGTCGCTTGGAGAAGGCGAG..................................................................................................................... 29 1 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGAAGGCGAG..................................................................................................................... 26 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TTTGGACAGTCGCTTGGAGA............................................................................................................................ 20 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGTCGCTTGGAGAAGGCG....................................................................................................................... 18 0 20 0.25 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAG............................................................................................................................. 21 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAAGGCT....................................................................................................................... 27 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGACACTCG.................................................... 25 1 20 0.25 5 0 0 0 0 0 0 0 0 0 2 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATTTGCCAAGCAACTCGAAACTC..................................................... 23 0 20 0.25 5 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TTTGGACAGTCGCTTGGAGAAGG......................................................................................................................... 23 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGACGG......................................................................................................................... 25 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GACAGTCGCTTGGAGACGGCGTG..................................................................................................................... 23 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAAC....................................................... 22 0 20 0.25 5 0 0 0 0 2 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGCCGCTTGGAGAAGG......................................................................................................................... 25 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGATAGTCGTTTGGAAAAGGC........................................................................................................................ 26 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGAAGGCGA...................................................................................................................... 25 0 20 0.20 4 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGCCG.......................................................................................................................... 24 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACTCGAGTC................................................ 29 0 20 0.20 4 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAGCTCGA................................................... 26 1 20 0.20 4 0 0 0 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTT................................................................................................................................ 18 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAAA.......................................................................................................................... 24 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGTATAAGGC........................................................................................................................ 26 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACCGTCGCTTGGAGAAGGC........................................................................................................................ 26 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAAAGC........................................................................................................................ 26 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGGGACTAGTACAGGGGTTGAAA........................................................................................................................................................ 23 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGAAGGC........................................................................................................................ 23 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACTCGAGT................................................. 28 0 20 0.15 3 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTGGTTGGGGACTCGAATTTATATTT........................................................................ 26 0 20 0.15 3 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ACAGTCGCTTGGAGAAGGC........................................................................................................................ 19 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGAA........................................................................................................................... 20 0 20 0.15 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGTTTGCCAAGCAACTCGAAACTCGAG.................................................. 27 1 20 0.15 3 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAA......................................................... 20 0 20 0.15 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAATCAACTCGAAACTCGA................................................... 26 1 20 0.15 3 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGAAG.......................................................................................................................... 21 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTGGTTGGGGACTCGAATTTATATT......................................................................... 25 0 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAGCTCGAG.................................................. 27 1 20 0.15 3 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAAGGTA....................................................................................................................... 27 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGAAGGCGACT.................................................................................................................... 27 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTCGGAGAAG.......................................................................................................................... 24 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TTTGGACAGTCGCTTAGAGAAGGC........................................................................................................................ 24 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCGCTTGGAGAAGTAA....................................................................................................................... 27 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TTCAGACAGTCGCTTGGAGAAAGC........................................................................................................................ 24 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAATCGCTTGGAGAAGG......................................................................................................................... 25 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TATTTGGACAGTCACTTGGAGAAGG......................................................................................................................... 25 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTATTTGCCAAGCAACTCGAAACTC..................................................... 25 1 20 0.10 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TCTTTGCCAAGCAACTCGAAACTCGAG.................................................. 27 1 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCTACTGGGACTAGTACAGGGGTTGACC........................................................................................................................................................ 28 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0
...................................................TGGACAGTCGCTTGGAGAAG.......................................................................................................................... 20 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAGCTCGAGT................................................. 28 1 20 0.10 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGCCAAGCAACTCGAAACTCGAGTCA............................................... 27 0 20 0.10 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGTCGCTTGGAGAAGGCG....................................................................................................................... 19 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTGGTTGGGGACTCGAATTTATAT.......................................................................... 24 0 20 0.10 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CCAAGCAACTCGAAACTCGAG.................................................. 21 0 20 0.10 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................AGTCGCTTGGAGAAGGCGT...................................................................................................................... 19 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CATTTGCCAAGCAACTCGAAACTCGA................................................... 26 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGACAGTCGCTTGGAGAAGGC........................................................................................................................ 22 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGACACTCGAG.................................................. 27 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................AAGGCGAGTTGAGGCTTG........................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................CAAGCAACTCGAAACTCGAG.................................................. 20 0 20 0.10 2 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AGGGGTTGAAATCGTGGT................................................................................................................................................. 18 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................AGACCGGAGAATTTGGACA........................................................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGGCGATTGGTTGGGGACTCGAATTTA............................................................................. 27 0 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATATTTGCCAAGCAACTCGAAACT...................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCTACTGGGACTAGTACAGGGGTT............................................................................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCGAGCAACTCGAAACTCG.................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTTCCAAGCAACTCGAAACTCGAG.................................................. 27 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGAAGGA........................................................................................................................ 23 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATATTTGCCAAGCAACTCGAAACTC..................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................GTTGGACAGTCGCTTGGAGAAG.......................................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTCGCCAAGCAACTCGAAACTCGAG.................................................. 27 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCTAAGCAACTCGAAACTCGAGT................................................. 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTGGCTTGGAGAAGGCGA...................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGAAAGTCGCTTGGAGAAGGCGA...................................................................................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ACTCGAAACTCGAGTCAAAATTAC........................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGATACTCGA................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCTACTGGGACTAGTACCGGGGTTG........................................................................................................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAATCAACTCGAAACTCGAGT................................................. 28 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGACACTCGA................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTATATTTGCCAAGCAACTCGAAACT...................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAATCTCG.................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TCTTTGCCAAGCAACTCGAAACTCG.................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TAATTGCCAAGCAACTCGAAACTCGA................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................ATCAGGGGGTGAAACCGG.................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACGCGAAACTCGA................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACTCGAT.................................................. 27 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCTACTGGGACTAGCACAGGGGTTG........................................................................................................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCCAAGCAACTCGAAACTCGAG.................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............CTACTGGGACTAGTACAGGGGTTGCA......................................................................................................................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTAGCCAAGCAACTCGAAACTCG.................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGTTTGCCAAGCAACTCGAAACTCGA................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTGCCAAGCAACTCGAAACTCG.................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAGCTCGAGTC................................................ 29 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TTGGGGACTCGAATTTACCC.......................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TGGGACTAGTGCAGGGGTTG........................................................................................................................................................... 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................TTGTTGGGGACTCGAATTTATATTT........................................................................ 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACCCGAAACTCG.................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCTACTGGGACTAGTACAGGGGTTGAT......................................................................................................................................................... 27 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGTAACTCGAAACTCG.................................................... 25 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ACAGTCGCTTGGAGAAGGCG....................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GGCGATTGGTTGGGGACTCGAATT............................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGAAAGTCGCTTGGAGAAG.......................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GATTGGTTGGGGACTCGAATTTATATT......................................................................... 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGACAGTCGCTTGGAGAAGGCG....................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGACAGTCGCTTGGAGAA........................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGTCGCTTGGAGAAGGC........................................................................................................................ 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAGTCTCTTGGAGAAGGC........................................................................................................................ 18 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGA.......................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATTGGTTGCGGACTTGAATTC.............................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGA............................................................................................................................ 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTATTTGCCACGCAACTCGAAACTCG.................................................... 26 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GTTTGGGTGGGGACTCGAAA................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAC............................................................................................................................. 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GATTGGTTGGGGACTCGAATTTATC........................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TCTTTGCCAAGCAACTCGAAACTCGA................................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCTACTGGGACTAGTACAGGGGTTGAACC....................................................................................................................................................... 29 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................TTTGCCAAGCAACTCGAAACTCGAGTCA............................................... 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATATTTGCCAAGCAACTCGAAACTCG.................................................... 27 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................GTAGGTTGGGGACTCG................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGAGAAGGCTA...................................................................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTGGTTGGGGACTCGCATTTATATTT........................................................................ 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGCAACTC..................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACTCGC................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACTCGATA................................................. 28 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CTATTTGCCAAGCAACTCGAAACTCGAG.................................................. 28 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TTTTTGCCAAGCAACTCGAAACTCGAG.................................................. 27 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGGAACTCG.................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTCGCCAAGCAACTCGAAACTCG.................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTTGACAGTCGCTTGGAGAAGGCG....................................................................................................................... 24 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGGTTGGGGACTCGAATTTATATT......................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............TCTACTGGGACTAGTACAGGGGTTGAAA........................................................................................................................................................ 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAA........................................................ 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................TACTTGGACAGTCGCTTGGATAAG.......................................................................................................................... 24 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTATATTTGCCAAGCAACTCGAAACTCG.................................................... 28 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGGCCAAGCAACTCGAAACTCGA................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CTTTTGCCAAGCAACTCGAAACTCG.................................................... 25 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGAAACTCGATT................................................. 28 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTATATTTGCCAAGCAACTCGAAACTC..................................................... 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TACTGGGACTAGTACAGGGGTT............................................................................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TGGACAGTCGCTTGGAGAAGG......................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GACATTCGCTTGGAGAAGG......................................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TGCCAAGCAACTCGAAACTCGAGTCA............................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGCAACTCGCAACTCG.................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTTGCCAAGTAACTCGAAACTCGAG.................................................. 27 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TTTTTGCCAAGCAACTCGAAACTCGAGT................................................. 28 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGGCGATTGGTTGGGGACTC.................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATTAGCCAAGCAACTCGAAACT...................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTGGACAGTCGCTTGGATT............................................................................................................................ 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAGTCCATGTCCGAGATGACCCTGATCATGTCCCCAACTTTGGCCCCATAAACCTGTCAGCGAACCTCTTCCGCTCAACTCCGAGGTTGGCCGCTAACCAACCCCTGAGCTTAAATATAAACGGTTCGTTGAGCTTTGAGCTCAGTTTTAATGAGCTGTCGACGAATCGGTGCAATAAATTAAAATTCTTAAC
*************************************.(((.((..((((.((((...(((.((((((..((......(((((.(((((((((.....))))))))).))))).......))..)))))).)))))))))))..)).........)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060673
9_ovaries_total
 M047
female body
 SRR060682
9x140_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060654
160x9_ovaries_total
 GSM1528803
follicle cells		 SRR060656
9x160_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 V053
head
 SRR060680
 9xArg_testes_total
 M061
embryo
 SRR060681
Argx9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 V047
embryo
 SRR060658
140_ovaries_total
 SRR060672
9x160_females_carcasses_total
 V116
male body
......................................................................................................CCCTGAGCTTAAATATAAACGGTT................................................................... 24 0 15 1.60 24 1 4 0 0 3 1 0 0 5 3 4 1 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CCCCTGAGCTTAAATATAAACGGTT................................................................... 25 0 14 1.29 18 0 11 0 1 0 1 0 0 1 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................GAATCGGTGCAATAAATTAAAATTCT.... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTTAATGAGCTGTCGACGAATCGGTG..................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................TGAGCTCAGTTTTAATGAGCTGTCGAC.............................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTTAATGAGCTGTCGACGAATCGGT...................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TAATGAGCTGTCGACGAATCGGTG..................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CCTGAGCTTAAATATAAACGGTT................................................................... 23 0 15 0.73 11 0 2 1 0 0 1 0 0 1 1 1 0 2 0 0 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................GCTGTCGACGAATCGGTGC.................... 19 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................CTAATGAGCTGTCGACGAATCGGT...................... 24 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CCATGTCCGAGATGACCCTGAT....................................................................................................................................................................... 22 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GTTTTGATGAGCTGTCGACGAATCG........................ 25 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ACCCCTGAGCTTAAATATAAACGGTT................................................................... 26 0 14 0.36 5 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTTTGGCCCCATAAACCTGTCAGCGA.................................................................................................................................. 26 1 7 0.29 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................ATTTGAGCTGTCGACGAATCGGTG..................... 24 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................TGTCCCCAACTTTGACGCCACA............................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TATAATGAGCTGTTGACGAACCGGTG..................... 26 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTAAATATAAACGGTTCGTTGAGCTTT........................................................ 27 0 20 0.15 3 0 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CCCTGAGCTTAAATATTAACGGTT................................................................... 24 1 15 0.13 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TAATGATCTGGCGCCGAATCG........................ 21 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CCAACCCCTGAGCTTAAATATAAACGGTT................................................................... 29 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................CAACCCCTGAGCTTAAATATAAACGGTT................................................................... 28 0 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................AACCAACCCCTGAGCTTAAATATAAACG...................................................................... 28 0 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CCCTGAGCTTAAATATAAACGGT.................................................................... 23 0 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CCTGAGCTTAAATATTAACGGTT................................................................... 23 1 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................ACCTGAGCTTAAATATAAACGGTT................................................................... 24 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................CCGCCCCACTCCGAGCTTG........................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................TACCCCTGAGCTTAAATATAAACGGTT................................................................... 27 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................CCCCCGAGCTTAAATATAAACGGTT................................................................... 25 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AGCTTAAATATAAACGGTTCGTTGAGCT.......................................................... 28 0 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AACCTGTCAGCGAACCTCTT........................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................CCTGTCAGCGAACCTCTTCCGC....................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TAACCAACCCCTGAGCTTAAA.............................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................GAGCTTAAATATAAACGGTT................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ACCCCTGAGCTTAAATATAA......................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TGGGCAACTTTGGCCCCA................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........CGAGATGACCCTGATCATGTCC................................................................................................................................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CCGAGGTTGGCCGCTAACCAA............................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TTAAATATAAACGGTTCGTTGAGCT.......................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TGAGCTTAAATATAAACGGTT................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AGCTTAAATATAAACGGTT................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AAACGGTTCGTTGAGCTTTGAGCTCAG................................................ 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TCAACTCCGAGGTTGGCCGCTA................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................CAACCCCTGAGCTTAAATA............................................................................ 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CAACTCCGAGGTTGGCCGCT.................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13045:1014437-1014629 - dvi_228 ATCAGGTA---CAGGCTCT---ACTGGGACTAGTACAGGGGTTGAAACCGGGGTATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCGAGTTGAGGCTCCAACCGGCGATT-GGTTGGGGACTCGAATTTATATTTGCCAAGCAACTCGAAACTCGAGTCAAAATTACTCGACAGCTGCTTAGCCACGTTATTTAATTTTAAGAATTG
droMoj3 scaffold_6498:2053505-2053707 + ATCAGGTAATGTAGGGTCC---AATGAGTTAGGCGCCGATGATAAAACGGAAGCACAAGGTGAGGGTGGAGCGAATTAGGTGACGATGTTAGCGCAGAAGGAGGTACCAACAACAACGGAGCCTCCAA--TTGAGAAGGGCGACTCTCTT---------------------------------------------------------CAGCAGCATCCACATCACTGGATAATTGCATATAAATATTCTTCAATTTTAAAAATTG
droWil2 scf2_1100000004852:355670-355850 + AAGATG--GTGTAGGCGAA---AGTAAAATAGAAGAAGATGT---AATAGA-GAGTGCT-------------------------------------------------GGCGACTAC---------TT--A-------TGAGGCAACTCAAGGGTACACGT--C--TTGGAAAGGTGAAACGAACTTGAATTTTGACAATAAATGTACGCTAGAGTCATATTCATTAGACAGCTGTTTGGCCAGTTTGTTTAA----AGAAAGAA
droPer2 scaffold_89:147538-147588 + AATTGGAG---CAGGAATTGGAACAGGAATTGGAGCAGGAATTGGAGCAGGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777704:9064-9125 + TTAAGA-------------------------------------------------------------------------------------------------------------------------------------ACGACGATTTATAGCTTTAAATGCTAATC-GGTTGGGAATTTTATTTTATATTT---------------------------------------------------------------------TCC
droSec2 scaffold_2263:216-248 - ACCGAGTA---CGGGACCA---TTCGGGACTAGTACGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATCAGGTA---CAGGCTCT---ACTGGGACTAGTACAGGGGTTGAAACCGGGGTATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCGAGTTGAGGCTCCAACCGGCGATT-GGTTGGGGACTCGAATTTATATTTGCCAAGCAACTCGAAACTCGAGTCAAAATTACTCGACAGCTGCTTAGCCACGTTATTTAATTTTAAGAATTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGC.........................................................................................................................26424.2597000011300000330000000000549960000100031120000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGG..........................................................................................................................25422.258900001002100022000000000016111090001100030120000000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCG........................................................................................................................242016.6533300000000327000000000000000000400000200000000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAACTCG....................................................252012.1524300404000000030300000000034005500100101000000000000000000000000002000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCG........................................................................................................................27410.7543000021100000600000000001596500001000050100000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAACTCGA...................................................26208.451690000800000000000000000000006200400039035020000000000000001000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAG...........................................................................................................................2447.2529000010000000400000000002362100104003020000000000000000000000000
..........................................................................................................................................................................................................................................GCTTAGCCACGTTATTTAATTTTAAGAA...2817.007000000000000000000000000000100002002020000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAACTCGAG..................................................27205.151030000100000303000000000000096000000000000000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAA............................................................................................................................2343.7515000040100000100000000000002100004000010100000000000000000000000
..........................................................................................................................................................................................................................................GCTTAGCCACGTTATTTAATTTTAAGA....2713.003000000000000000000000000010000001000100000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GA.............................................................................................................................2241.757000000000000100000000000020010101000010000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCGAG......................................................................................................................2941.506000010000000000000000000100000001002010000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAACTC.....................................................24201.2024000070000000000000000000009000000000008000000000000000000000000
.............................................................................................................................................................................................ATTTGCCAAGCAACTCGAAACTCGA...................................................25200.80160016000000000000000000000000000000000000000000000000000000000000
................TCT---ACTGGGACTAGTACAGGGGTTGA............................................................................................................................................................................................................................26200.6513004000000000000000006000020000000010000000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAACTCGAA..................................................27200.5511005000000000000000000000003000000012000000000000000000000000000
ATCAGGTA---CAGGCTCT---ACTGGGACTA.........................................................................................................................................................................................................................................2620.501000000000000000000000000000000000001000000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCGT.......................................................................................................................2840.502000000100000000000000000001000000000000000000000000000000000000
................TCT---ACTGGGACTAGTACAGGGGTTG.............................................................................................................................................................................................................................25200.5010000000200000000000006000000000010000000100000000000000000000000
.......................................................TTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGC.........................................................................................................................2440.502000000000000100000000000000100000000000000000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCGAGT.....................................................................................................................2740.502000000000000000000000000010100000000000000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------...............................................................................................................................2040.502000000000000100000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................GCTTAGCCACGTTATTTAATTTTA.......2440.502000000000000000000000000000100000000010000000000000000000000000
................TCT---ACTGGGACTAGTACAGGGGTTGAA...........................................................................................................................................................................................................................27200.459000070000000000000000000000000100000000100000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGG..........................................................................................................................22200.459000000000000000000006000000000000000000000000000000000000000030
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAACT......................................................23200.357000000001000000000000001013000000000000000000001000000000000000
....................................................................................................................................................................................................................................................GTTATTTAATTTTAAGAA...1830.331001000000000000000000000000000000000000000000000000000000000000
..............................................ACCGGGGTATTTG-------------------------------------------------GACAGTCGC---------TTGG.......................................................................................................................................2630.331000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................ATTTGCCAAGCAACTCGAAACTCGAG..................................................26200.306006000000000000000000000000000000000000000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCC........................................................................................................................2740.251000000000000000000000000000000001000000000000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCGAG......................................................................................................................2640.251000000000000000000000000010000000000000000000000000000000000000
.......................................................TTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GA.............................................................................................................................2040.251000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................AGTCGC---------TTGGA-------GAAGGCG........................................................................................................................18200.255000000000000000000000000000000000000005000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------G..............................................................................................................................2140.251000010000000000000000000000000000000000000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCT........................................................................................................................2740.251000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................ATTTGCCAAGCAACTCGAAACTC.....................................................23200.255005000000000000000000000000000000000000000000000000000000000000
.......................................................TTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGG..........................................................................................................................2340.251000000001000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAAC.......................................................22200.255000000000000000000000000000200000000120000000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCGA.......................................................................................................................25200.204200000000000000000000000000200000000000000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAACTCGAGTC................................................29200.204000000000000000000000000012000000000001000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTT........................................................................................................................................1860.171000000000000000000000000001000000000000000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAA...........................................................................................................................2460.171000000000000000000000000100000000000000000000000000000000000000
........................TGGGACTAGTACAGGGGTTGAAA..........................................................................................................................................................................................................................23200.153000000000030000000000000000000000000000000000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGC.........................................................................................................................23200.153000000000000000000003000000000000000000000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAACTCGAGT.................................................28200.153000000000000000000000000012000000000000000000000000000000000000
......................................................................................................................................................................TT-GGTTGGGGACTCGAATTTATATTT........................................................................26200.153000000000000100000000000010000000000010000000000000000000000000
.............................................................................................................ACAGTCGC---------TTGGA-------GAAGGC.........................................................................................................................19200.153000000000000030000000000000000000000000000000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAA............................................................................................................................20200.153200000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAA.........................................................20200.153000000000000000000000000300000000000000000000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAG...........................................................................................................................21200.153000000000000000000000000000000000000300000000000000000000000000
......................................................................................................................................................................TT-GGTTGGGGACTCGAATTTATATT.........................................................................25200.153000000000000000000000000000300000000000000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGTA........................................................................................................................2770.141000000000000100000000000000000000000000000000000000000000000000
.....................................................TATTTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGTAA........................................................................................................................2780.131000000000000100000000000000000000000000000000000000000000000000
................TCT---ACTGGGACTAGTACAGGGGTTGACC..........................................................................................................................................................................................................................28200.102000000000000000000000000000000000000000000000000100000000100000
.........................................................TG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAG...........................................................................................................................20200.102000000000000000000000000000020000000000000000000000000000000000
...............................................................................................................................................................................................TTGCCAAGCAACTCGAAACTCGAGTCA...............................................27200.102000000000000000000000000010000000000010000000000000000000000000
..............................................................................................................CAGTCGC---------TTGGA-------GAAGGCG........................................................................................................................19200.102000000000020000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TT-GGTTGGGGACTCGAATTTATAT..........................................................................24200.102000000000000000000000000001000000000010000000000000000000000000
..................................................................................................................................................................................................CCAAGCAACTCGAAACTCGAG..................................................21200.102000000000000000000000000000000000001010000000000000000000000000
...............................................................................................................AGTCGC---------TTGGA-------GAAGGCGT.......................................................................................................................19200.102000000000020000000000000000000000000000000000000000000000000000
.........................................................TG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGC.........................................................................................................................22200.102000000002000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AAGGCGAGTTGAGGCTTG............................................................................................................18100.101000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................CAAGCAACTCGAAACTCGAG..................................................20200.102000000000000000000000001100000000000000000000000000000000000000
................................................................................................................................................................CGGCGATT-GGTTGGGGACTCGAATTTA.............................................................................27190.051000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................ATATTTGCCAAGCAACTCGAAACT......................................................24200.051000000000000000000000000000000001000000000000000000000000000000
................TCT---ACTGGGACTAGTACAGGGGTT..............................................................................................................................................................................................................................24200.051000000000000000000000000000000000000000100000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGA.........................................................................................................................23200.051000000001000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................ATATTTGCCAAGCAACTCGAAACTC.....................................................25200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................................ACTCGAAACTCGAGTCAAAATTAC........................................24200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TTATATTTGCCAAGCAACTCGAAACT......................................................26200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAACTCGAT..................................................27200.051000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................GCCAAGCAACTCGAAACTCGAG..................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TTGCCAAGCAACTCGAAACTCG....................................................22200.051000000000000000000000000000000001000000000000000000000000000000
...........................................................................................................................................................................TTGGGGACTCGAATTTACCC..........................................................................20200.051100000000000000000000000000000000000000000000000000000000000000
................TCT---ACTGGGACTAGTACAGGGGTTGAT...........................................................................................................................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................ACAGTCGC---------TTGGA-------GAAGGCG........................................................................................................................20200.051000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................GGCGATT-GGTTGGGGACTCGAATT...............................................................................24200.051000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................GATT-GGTTGGGGACTCGAATTTATATT.........................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................TG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGGCG........................................................................................................................23200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................TG-------------------------------------------------GACAGTCGC---------TTGGA-------GAA............................................................................................................................19200.051000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................CAGTCGC---------TTGGA-------GAAGGC.........................................................................................................................18200.051000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGA..........................................................19200.051000000000000000000000000000000000000001000000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------GA.............................................................................................................................19200.051000000000000000000000000001000000000000000000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------C..............................................................................................................................18200.051100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GATT-GGTTGGGGACTCGAATTTATC...........................................................................25200.051000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................TTTGCCAAGCAACTCGAAACTCGAGTCA...............................................28200.051000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................TATATTTGCCAAGCAACTCGAAACTCG....................................................27200.051000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAACTCGC...................................................26200.051000000000000000000000001000000000000000000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAACTCGATA.................................................28200.051000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................T-GGTTGGGGACTCGAATTTATATT.........................................................................24200.051000000000000000000000000000000000010000000000000000000000000000
................TCT---ACTGGGACTAGTACAGGGGTTGAAA..........................................................................................................................................................................................................................28200.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................TATTTGCCAAGCAACTCGAAA........................................................21200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................TTATATTTGCCAAGCAACTCGAAACTCG....................................................28200.051000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................TTATATTTGCCAAGCAACTCGAAACTC.....................................................27200.051000000000000000000000000010000000000000000000000000000000000000
..................T---ACTGGGACTAGTACAGGGGTT..............................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................TG-------------------------------------------------GACAGTCGC---------TTGGA-------GAAGG..........................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................TGCCAAGCAACTCGAAACTCGAGTCA...............................................26200.051000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................CGGCGATT-GGTTGGGGACTC....................................................................................20200.051000000100000000000000000000000000000000000000000000000000000000
........................................................TTG-------------------------------------------------GACAGTCGC---------TTGGA-------TT.............................................................................................................................19200.051100000000000000000000000000000000000000000000000000000000000000
droMoj3
ATCAGGTAATGTAGGGTCC---AATGAGTTAGGCGCCGATGATAAAACGGAAGCACAAGGTGAGGGTGGAGCGAATTAGGTGACGATGTTAGCGCAGAAGGAGGTACCAACAACAACGGAGCCTCCAA--TTGAGAAGGGCGACTCTCTT---------------------------------------------------------CAGCAGCATCCACATCACTGGATAATTGCATATAAATATTCTTCAATTTTAAAAATTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................CATCACTGGATAATTGCATATAAATA....................2613.003300000
...........................................................................................................................................................................................................................CATCACTGGATAATTGCATATAAAT.....................2511.001000010
..........................................................................................................................CTCCAA--TTGAGAAGGGCGACTCTCT....................................................................................................................2511.001000010
............................................................................................CGCAGAAGGAGGTACCAACAACAAC....................................................................................................................................................2521.002100010
................TCC---AATGAGTTAGGCGCCGATGATA.............................................................................................................................................................................................................................2511.001100000
.....................................................CACAAGGTGAGGGTGGAGCGAATTAGG.........................................................................................................................................................................................2711.001000010
.......................................................................................................................................AAGGGCGACTCTCTT---------------------------------------------------------CAGCA.....................................................2011.001100000
ATCAGGTAATGTAGGGTCC---AA.................................................................................................................................................................................................................................................2120.501100000
............................................................................................CGCAGAAGGAGGTACCAACAACAACGG..................................................................................................................................................2720.501100000
................TCC---AATGAGTTAGGCGCCGAT.................................................................................................................................................................................................................................2120.501100000
............................................................................................CGCAGAAGGAGGTACCAACAACAACG...................................................................................................................................................2620.501100000
.......................................TGATAAAACGGAAGCACAAGGTGAGGG.......................................................................................................................................................................................................2720.501100000
.TCAGGTAATGTAGGGTCC---AATGAG.............................................................................................................................................................................................................................................2430.331000001
.TCAGGTAATGTAGGGTCC---AATGAGTA...........................................................................................................................................................................................................................................2630.331100000
.TCAGGTAATGTAGGGTCC---AATGAGTT...........................................................................................................................................................................................................................................2630.331100000
.............................................................................................................ACAACAACGGAGCCTCCAA--TTGAGAAG...............................................................................................................................2730.331100000
..........................................................................ATTAGGTGACGATGTTAGCGC..........................................................................................................................................................................2130.331100000
................................................................................TGACGATGTTAGCGCAGAAGG....................................................................................................................................................................2140.251100000
....................................................................................................................................................TT---------------------------------------------------------CAGCAGCATCCACATCACTGGAT...................................2550.201100000
.....................................................................................................................................................................................................................................................TTCTTCAATTTTAAAAATT.1990.111100000
droWil2
AAGATG--GTGTAGGCGAA---AGTAAAATAGAAGAAGATGT---AATAGA-GAGTGCT-------------------------------------------------GGCGACTAC---------TT--A-------TGAGGCAACTCAAGGGTACACGT--C--TTGGAAAGGTGAAACGAACTTGAATTTTGACAATAAATGTACGCTAGAGTCATATTCATTAGACAGCTGTTTGGCCAGTTTGTTTAA----AGAAAGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.AGATG--GTGTAGGCGAA---AGT................................................................................................................................................................................................................................................19200.6513000013
..........................................................................................................................................................................................................................TATTCATTAGACAGCTGTTTGGCCAGT....................2720.50100010
......................................................................................................................................................................................................................GTCATATTCATTAGACAGCTGTTT...........................2420.50100010
..........................................................................................................................................................................................................................TATTCATTAGACAGCTGTTTGGCCAG.....................2620.50100010
.................................................................................................................................................................................................................................TAGACAGCTGTTTGGCCAGTTTGT................24200.25505000
.......................................TGT---AATAGA-GAGTGCT-------------------------------------------------GGCGACTAC---------T..........................................................................................................................................2640.25100010
.............................................................................................................................................................................................................................TCATTAGACAGCTGTTTGGCCAGT....................2470.14100010
.AGATG--GTGTAGGCGAA---AGTAA..............................................................................................................................................................................................................................................21200.10200002
..................................GAAGATGT---AATAGA-GAGTGCT-------------------------------------------------GG...........................................................................................................................................................23110.09101000
.........................................T---AATAGA-GAGTGCT-------------------------------------------------GGCGACT......................................................................................................................................................21200.05100001
.....................................................................................................................................................................................................AATAAATGTACGCTAGAGTCA...............................................21200.05100001
......................................................................................................................................................................................................................................AGCTGTTTGGCCAGTTTGTTTAA----AGA.....26200.05101000
........................................GT---AATAGA-GAGTGCT-------------------------------------------------GGCGACT......................................................................................................................................................22200.05101000
..GATG--GTGTAGGCGAA---AGTAAA.............................................................................................................................................................................................................................................21200.05100010
..........................................................................................................................................................................................................................................GTTTGGCCAGTTTGTTTAA----AGAA....23200.05100010
.................................................................................................................................................................................................................................TAGACAGCTGTTTGGCCAGTTTGTT...............25200.05101000
.......................................TGT---AATAGA-GAGTGCT-------------------------------------------------GGCGA........................................................................................................................................................21200.05101000
.........................................................................................................................................................................................................................................TGTTTGGCCAGTTTGTTTAA----AGAAAGAA28200.05101000
droPer2
AATTGGAG---CAGGAATTGGAACAGGAATTGGAGCAGGAATTGGAGCAGGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................TTGGAGCAGGAATTGGAG..........................................................................................................................................................................................................................18200.357070000
...TGGAG---CAGGAATTGGAACAGGAAT...........................................................................................................................................................................................................................................24200.153030000
..............GAATTGGAACAGGAATTGGAGCAGG..................................................................................................................................................................................................................................25200.153030000
.................TTGGAACAGGAATTGGAGCAGGAAT...............................................................................................................................................................................................................................25200.153030000
.......................CAGGAATTGGAGCAGGAATTGG............................................................................................................................................................................................................................22200.153030000
...TGGAG---CAGGAATTGGAACAGGAATTG.........................................................................................................................................................................................................................................26200.153030000
..TTGGAG---CAGGAATTGGAACAGGAATTG.........................................................................................................................................................................................................................................27200.102020000
...TGGAG---CAGGAATTGGAACAGGAATT..........................................................................................................................................................................................................................................25200.102020000
...........CAGGAATTGGAACAGGAATTGGAGCA....................................................................................................................................................................................................................................26200.051010000
..................TGGAACAGGAATTGGAGCAGGAAT...............................................................................................................................................................................................................................24200.051010000
..TTGGAG---CAGGAATTGGAACAGGAATA..........................................................................................................................................................................................................................................26200.051100000
..................TGGAACAGGAATTGGAGCAGGAATT..............................................................................................................................................................................................................................25200.051010000
..................TGGAACAGGAATTGGAGCAGGAATTG.............................................................................................................................................................................................................................26200.051010000
...........CAGGAATTGGAACAGGAATTGGAG......................................................................................................................................................................................................................................24200.051010000
.............GGAATTGGAACAGGAATTGGAGCAGT..................................................................................................................................................................................................................................26200.051010000
.................TTGGAACAGGAATTGGAGCAA...................................................................................................................................................................................................................................21200.051010000
.................TTGGAACAGGAATTGGAGCAGGA.................................................................................................................................................................................................................................23200.051010000
...............................GGAGCAGGAATTGGAGCAGGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------23200.051010000
...TGGAG---CAGGAATTGGAACAGGAAAAA.........................................................................................................................................................................................................................................26200.051010000
....GGAG---CAGGAATTGGAACAGGAATTGG........................................................................................................................................................................................................................................26200.051010000
........................AGGAATTGGAGCAGGAATTG.............................................................................................................................................................................................................................20200.051010000
.......G---CAGGAATTGGAACAGGAATTG.........................................................................................................................................................................................................................................22200.051010000
......................ACAGGAATTGGAGCAGGAATTGG............................................................................................................................................................................................................................23200.051010000
.................TTGGAACAGGAATTGGAGCAGG..................................................................................................................................................................................................................................22200.051010000
...TGGAG---CAGGAATTGGAACAGGAATTGG........................................................................................................................................................................................................................................27200.051010000
.....................AACAGGAATTGGAGCAGGAATTGG............................................................................................................................................................................................................................24200.051010000
..................TGGAACAGGAATTGGAGCAGGA.................................................................................................................................................................................................................................22200.051010000
...........CAGGAATTGGAACAGGAATTGG........................................................................................................................................................................................................................................22200.051010000
.............GGAATTGGAACAGGAATTGGAGCAGG..................................................................................................................................................................................................................................26200.051010000
.................TTGGAACAGGAATTGGAGCAGGT.................................................................................................................................................................................................................................23200.051010000
...TGGAG---CAGGAATTGGAACAGG..............................................................................................................................................................................................................................................21200.051010000
................ATTGGAACAGGAATTGGAGCAG...................................................................................................................................................................................................................................22200.051010000
.................TTGGAACAGGAATTGGAG......................................................................................................................................................................................................................................18200.051010000
.......................CAGGAATTGGAGCAGGAATTGGAGC.........................................................................................................................................................................................................................25200.051100000
...........CAGGAATTGGAACAGGAATTGGAGC.....................................................................................................................................................................................................................................25200.051010000
....GGAG---CAGGAATTGGAACAGGAATT..........................................................................................................................................................................................................................................24200.051010000
..............................TGGAGCAGGAATTGGAGCAGGAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------24200.051010000
.............GGAATTGGAACAGGAATTGGAG......................................................................................................................................................................................................................................22200.051010000
....................GAACAGGAATTGGAGCAGGAATTG.............................................................................................................................................................................................................................24200.051100000
..............................TGGAGCAGGAATTGGAGCA........................................................................................................................................................................................................................19200.051010000
.....GAG---CAGGAATTGGAACAGGAATTGG........................................................................................................................................................................................................................................25200.051010000
..TTGGAG---CAGGAATTGGAACAGGAA............................................................................................................................................................................................................................................24200.051010000
......AG---CAGGAATTGGAACAGGAAAAA.........................................................................................................................................................................................................................................23200.051010000
..............................TGGAGCAGGAATTGGAGCAGGAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------24200.051010000
droRho1
TTAAGA-------------------------------------------------------------------------------------------------------------------------------------ACGACGATTTATAGCTTTAAATGCTAATC-GGTTGGGAATTTTATTTTATATTT---------------------------------------------------------------------TCCSizeHit CountTotal NormTotal
No Reads
droSec2
ACCGAGTA---CGGGACCA---TTCGGGACTAGTACGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads

Generated: 05/15/2015 at 04:24 PM