ID:

dvi_2239

 Coordinate:

scaffold_12799:248287-248491 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.0 -17.7 -17.7

Flybase annnotation

CDS [Dvir\GJ19790-cds]; exon [dvir_GLEANR_5057:3]; exon [dvir_GLEANR_5057:2]; CDS [Dvir\GJ19790-cds]; intron [Dvir\GJ19790-in]

Repeatable elements

NameClassFamilyStrand
Gypsy4-I_Dmoj-intLTRGypsy-
mature
  1. dvi_2238  scaffold_12799:248086-248111 -
  2. dvi_2239  scaffold_12799:248396-248421 -
star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGACCACTGGTGAAGAAGAGGAGAAACCAGGAGCTATGGACGCCCACGAGTAAGCAAGGAGTGAGAATGGCAGCCGTCGCCCAACGTAAGCACTTAATAAATTTAGATTAGACTAACACAAGTAGCATAGCTAGAGGGGGCTTTGTAGTCTCGTTACCGCTTCGTCCATTTCTTTTGCCTGCTTGCCTCTGTTGTACCGAACGAAATGTAGGCAGGCACTCGTGTTATTTGAGTTACATCGTGCACCTTGCTAGCCCGGGAGGACGAAAGAAGAGAGCCAATATATCACAGCTGAAACCATTCC
************************************************************************************************************************.....((..(((..((.((((((....)))))).))...)))..)).((((((.((((..(((...........))).)))).))))))..********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060688
160_ovaries_total
 V053
head
 SRR060654
160x9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 M027
male body		 SRR060663
160_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR1106729
mixed whole adult body
 SRR060656
9x160_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR1106714
embryo_2-4h
 SRR1106715
embryo_4-6h
 SRR060689
160x9_testes_total
 M061
embryo
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 SRR060682
9x140_0-2h_embryos_total
........................................................................................................................AAGTAGCATAGCTAGAGGGGGCTTTG............................................................................................................................................................... 26 0 2 3.00 6 0 1 0 0 3 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTAGCATAGCTAGAGGGG..................................................................................................................................................................... 20 0 2 2.50 5 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGTTGTACCGAACGAAATGTA.............................................................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................TACATCGTGCACCTTGCTAGC................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGGCATTGTAGTCGCGTTTCC.................................................................................................................................................. 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TTGCCTCTGTTGTACCGAACGAAATG................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTAGCATAGCTAGAGGG...................................................................................................................................................................... 19 0 2 1.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AATGTAGGCAGGCACTCGTG................................................................................ 20 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GAGGAGAAACCAGGAGCTATGGACGCCC................................................................................................................................................................................................................................................................... 28 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................GGAGGACGAAAGAAGAGAGCC......................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTAGCATAGCTAGAGGGGGC................................................................................................................................................................... 22 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTACCGCTTCGTCCATTTCTT.................................................................................................................................. 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CTCGTTACCGCTTCGTCCATT...................................................................................................................................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TTAGACTAACACAAGTAGCATAGCT............................................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......CTGGTGAAGAAGAGGAGAAAC..................................................................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AAGTAGCATAGCTAGAGGGAGCT.................................................................................................................................................................. 23 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................CAATATATCACAGCTGAAACC..... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................GAGCCAATATATCACAGCTGA......... 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACCGAACGAAATGTAGGCAGGCAC..................................................................................... 24 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AGAAACCAGGAGCTATGGACG...................................................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GAGTAAGCAAGGAGTGAGAATGG.......................................................................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TACCGCTTCGTCCATTTCTTT................................................................................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GGTGAAGGAGAGGAGATAC..................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................AACCAGGAGCTATGGACGCC.................................................................................................................................................................................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GAAGAGGAGAAACCAGGAGCTATGGACGCC.................................................................................................................................................................................................................................................................... 30 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................CCTTGCTAGCCCGGGAGGACG...................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CGAACGAAATGTAGGCAGGCA...................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................CAGCCGTCGCCCAACGTAAGC..................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GTGTTATTTGAGTTACATCG............................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TAGTCTCGTTACCGCTTCGTC.......................................................................................................................................... 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ACGAAATGTAGGCAGGCACTC................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACCGAACGAAATGTAGGCAGG........................................................................................ 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CTTGCCTCTGTTGTACCGAACGAAA.................................................................................................. 25 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................AAACCAGGAGCTATGGACGCC.................................................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................TAGACTAACACAAGTAGCATAGCTAGAG........................................................................................................................................................................ 28 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................AGGGTCATCGTGCACCTTGC..................................................... 20 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................ATGCAAGGGGTGTGAATGGCA........................................................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................AGGTCGAAAGAAGGAAGCCAA....................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGGCTTTGCAGTCGCGTTGCC.................................................................................................................................................. 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................GTCTCCCAACGTAAGCCC................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......AGTGGTGAAGAGGAGGAG......................................................................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................CGAATCAAATGTAGGCAG......................................................................................... 18 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGGCATTGTAGTCTCATTGC................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GGTGAAGATGAAGAGAAAC..................................................................................................................................................................................................................................................................................... 19 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AGCAAGGAGTGACAGTGGCT........................................................................................................................................................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................................................................................................................................CGAAAGAAGGGAGCCAACAGA................... 21 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................AGGAGTGAGAATGCCGGT...................................................................................................................................................................................................................................... 18 3 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTAAGGAGTGCTAAT............................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTCTGGTGACCACTTCTTCTCCTCTTTGGTCCTCGATACCTGCGGGTGCTCATTCGTTCCTCACTCTTACCGTCGGCAGCGGGTTGCATTCGTGAATTATTTAAATCTAATCTGATTGTGTTCATCGTATCGATCTCCCCCGAAACATCAGAGCAATGGCGAAGCAGGTAAAGAAAACGGACGAACGGAGACAACATGGCTTGCTTTACATCCGTCCGTGAGCACAATAAACTCAATGTAGCACGTGGAACGATCGGGCCCTCCTGCTTTCTTCTCTCGGTTATATAGTGTCGACTTTGGTAAGG
**********************************************************************************************.....((..(((..((.((((((....)))))).))...)))..)).((((((.((((..(((...........))).)))).))))))..************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 SRR060666
160_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060688
160_ovaries_total
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060673
9_ovaries_total
 M061
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR1106712
embryo_0-2h
 SRR060687
9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 V047
embryo
 SRR060665
9_females_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060655
9x160_testes_total
 SRR060680
 9xArg_testes_total
 SRR060689
160x9_testes_total
 V116
male body		 M028
head
 SRR060659
Argentina_testes_total
 SRR060681
Argx9_testes_total
.................TCTCCTCTTCAGTCCTCGA............................................................................................................................................................................................................................................................................. 19 2 3 17.67 53 2 7 11 8 5 0 0 5 5 4 0 0 0 2 0 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 0 0 0 0 0
.................TCTCCTCTTCAGTCCTCGAC............................................................................................................................................................................................................................................................................ 20 3 15 4.60 69 2 6 10 5 7 0 0 9 6 10 2 0 0 0 1 1 0 0 0 0 1 5 0 3 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................................................CTTCTCTCGGTTATATAGTGTCGACT......... 26 0 2 4.50 9 8 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GTCTCCTCTTCAGTCCTCGA............................................................................................................................................................................................................................................................................. 20 3 6 3.33 20 1 6 6 4 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................GGCAGCGGGTTGCATTCGTGA.................................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................CTCGGTTATATAGTGTCGACTTTGGTA... 27 0 2 2.00 4 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................CGTGGAACGATCGGGCCCTCCT........................................ 22 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TCTCCTCTTCAGTCCTCG.............................................................................................................................................................................................................................................................................. 18 2 5 2.00 10 0 6 0 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TCTTCTCTCGGTTATATAGTGTCGACT......... 27 0 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CGGTTATATAGTGTCGACTTTGGTA... 25 0 2 1.50 3 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TCGGTTATATAGTGTCGACTTTGGTA... 26 0 2 1.50 3 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGCAATGGCGAAGCAGGTAAA..................................................................................................................................... 21 0 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GCGGGTTGCATTCGTGAATTA.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................CTTCTCTCGGTTATATAGTGTCGAC.......... 25 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TGGCGAAGCAGGTAAAGAAAA................................................................................................................................ 21 0 2 1.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TCCCCCGAAACATCAGAGCAA..................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TCAATGTAGCACGTGGAACGATCGGGC.............................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGCGGGTTGCATTCGTGAATT............................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGCGGATTGAAGTCGTGAATT............................................................................................................................................................................................................... 21 3 7 0.71 5 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 1 0
..............TCGTCTCCTCTTCAGTCCTCGA............................................................................................................................................................................................................................................................................. 22 3 3 0.67 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GAGCACAATAAACTCAATGTAGCAC............................................................. 25 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GCCCTCCTGCTTTCTTCTCTC........................... 21 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GGTGCTCATTCGTTCCTCACT................................................................................................................................................................................................................................................ 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACATCCGTCCGTGAGCACAAT............................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TACCTGCGGGTGCTCATTCGTTCCT.................................................................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TCAATCTAATCTGATTGTGTTCATCGT................................................................................................................................................................................. 27 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................CGGCAGCGGGTTGCATTCGT.................................................................................................................................................................................................................... 20 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CGGTTATATAGTGTCGACTTT....... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GGTCCTCGATACCTGCGGGTGCTCAT............................................................................................................................................................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CGGTTATATAGTGTCGACT......... 19 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGGTCCTCGATACCTGCGGGT.................................................................................................................................................................................................................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................GGAACGATCGGGCCCTCCTGCTTTCTT................................ 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................GCTCGGGCCCTCCTGCTTTCT................................. 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CTCCTCTTTGGTCCTCGATAC.......................................................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................GGCGAAGCAGGTAAAGAAAAC............................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................GTTATATAGTGTCGACTTTGGTA... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CGGGTGCTCATTCGTTCCTCACTCT.............................................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................CGGGTGCTCATTCGTTCCTCA.................................................................................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CGATACCTGCGGGTGCTCATTCGTTCCT.................................................................................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GAGACAACATGGCTTGCTT................................................................................................... 19 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................CTCTCTCGGTTATATAGTGTCGACT......... 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CTCGATACCTGCGGGTGCTCATT........................................................................................................................................................................................................................................................... 23 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................CCTCCTGCTTTCTTCTCTCGGTTATAT................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................ATACCTGCGGGTGCTCATTCG......................................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................AGAGCAATGGCGAAGCAGGTA....................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................CGTCGGCAGCGGGTTGCATTC...................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................CGGTTATATAGTGTCGAC.......... 18 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................ACTTCTCTCGGTTATATAGTGTCGACT......... 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TCTCCTCTTCCGTCCTCGA............................................................................................................................................................................................................................................................................. 19 2 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GGTCCTCGATACCTGCGGGTGCTCATT........................................................................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TATCGATCTCCCCCGAAACAT............................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGCGGATTGAAGTCGTGAAT................................................................................................................................................................................................................ 20 3 11 0.36 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0 0
......................................TTTGCGGGTGCTCATTCGTTC...................................................................................................................................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............TCGTCTCCTCTTCAGTCCTCG.............................................................................................................................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CCGTCCGTGAGCACAATAAAC......................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GTCTCCTCTTCAGTCCTCG.............................................................................................................................................................................................................................................................................. 19 3 20 0.30 6 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................CCTCCTTCTTTCTCCTCTCCG......................... 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................TCTCCTCTTCAGTCCTCGACA........................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................TGGTACCATCGGGCCCTG.......................................... 18 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................CTCCTCTTCAGTCCTCGA............................................................................................................................................................................................................................................................................. 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........ACCACCTCTACTCCTCTT....................................................................................................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................AGCGGATTGAAGTCGTGAA................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12799:248237-248541 - dvi_2239 AAGACCACTGGTGAAGAAGAGGAGAAACCAGGAGCTATGGACGCCCACGAGTAAGCAAGGAGTGAGAATGGCAGCCGTCGCCCAACGTAAGCACTTAATAAATTTAGATTAGACTAACACAAGTAGCATAGCTAGAGGGGGCTTTGTAGTCTCGTTACCGCTTCGTCCATTTCTTTTGCCTGCTTGCCTCTGTTGTACCGAACGAAATGTAGGCAGGCACTCGTGTTATTTGAGTTACATCGTGCACCTTGCTAGCCCGGGAGGACGAAAGAAGAGA---GCCAATATATCACAGCTGAAACCATTCC
droMoj3 scaffold_4124:7299-7370 - A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAGTGCGCCTGACGAAGGAGGGCGAACGCAAGAGGAGGGTGGCCAACATTGCGCAGCTGAAGCCATTCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAGACCACTGGTGAAGAAGAGGAGAAACCAGGAGCTATGGACGCCCACGAGTAAGCAAGGAGTGAGAATGGCAGCCGTCGCCCAACGTAAGCACTTAATAAATTTAGATTAGACTAACACAAGTAGCATAGCTAGAGGGGGCTTTGTAGTCTCGTTACCGCTTCGTCCATTTCTTTTGCCTGCTTGCCTCTGTTGTACCGAACGAAATGTAGGCAGGCACTCGTGTTATTTGAGTTACATCGTGCACCTTGCTAGCCCGGGAGGACGAAAGAAGAGA---GCCAATATATCACAGCTGAAACCATTCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................AAGTAGCATAGCTAGAGGGGGCTTTG..................................................................................................................................................................2623.006000000003010000000000000001000000000001000000000000000000000000
........................................................................................................................AAGTAGCATAGCTAGAGGGG........................................................................................................................................................................2022.505000000001010000000000000200000000010000000000000000000000000000
..............................................................................................................................................................................................TGTTGTACCGAACGAAATGTA.................................................................................................2112.002000000000000000000000000000200000000000000000000000000000000000
...........................................................................................................................................................................................................................................TACATCGTGCACCTTGCTAGC....................................................2111.001000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................TTGCCTCTGTTGTACCGAACGAAATG...................................................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................AAGTAGCATAGCTAGAGGG.........................................................................................................................................................................1921.002001010000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................AATGTAGGCAGGCACTCGTG...................................................................................2020.501000000000000000000000000100000000000000000000000000000000000000
..................GAGGAGAAACCAGGAGCTATGGACGCCC......................................................................................................................................................................................................................................................................2820.501000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................GGAGGACGAAAGAAGAGA---GCC.........................2120.501001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................AAGTAGCATAGCTAGAGGGGGC......................................................................................................................................................................2220.501000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TTACCGCTTCGTCCATTTCTT.....................................................................................................................................2120.501000010000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CTCGTTACCGCTTCGTCCATT.........................................................................................................................................2120.501000010000000000000000000000000000000000000000000000000000000000
............................................................................................................TTAGACTAACACAAGTAGCATAGCT...............................................................................................................................................................................2520.501001000000000000000000000000000000000000000000000000000000000000
.......CTGGTGAAGAAGAGGAGAAAC........................................................................................................................................................................................................................................................................................2120.501000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CAATATATCACAGCTGAAACC.....2120.501000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GA---GCCAATATATCACAGCTGA.........2120.501000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................ACCGAACGAAATGTAGGCAGGCAC........................................................................................2420.501100000000000000000000000000000000000000000000000000000000000000
......................AGAAACCAGGAGCTATGGACG.........................................................................................................................................................................................................................................................................2120.501000000000000010000000000000000000000000000000000000000000000000
................................................GAGTAAGCAAGGAGTGAGAATGG.............................................................................................................................................................................................................................................2320.501001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TACCGCTTCGTCCATTTCTTT....................................................................................................................................2120.501000000000000000000000000100000000000000000000000000000000000000
.........................AACCAGGAGCTATGGACGCC.......................................................................................................................................................................................................................................................................2020.501100000000000000000000000000000000000000000000000000000000000000
...............GAAGAGGAGAAACCAGGAGCTATGGACGCC.......................................................................................................................................................................................................................................................................3020.501000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................CCTTGCTAGCCCGGGAGGACG.........................................2120.501001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CGAACGAAATGTAGGCAGGCA.........................................................................................2120.501000000000000000000000000000000000000000000100000000000000000000
.......................................................................CAGCCGTCGCCCAACGTAAGC........................................................................................................................................................................................................................2120.501000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................GTGTTATTTGAGTTACATCG..................................................................2020.501000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................TAGTCTCGTTACCGCTTCGTC.............................................................................................................................................2120.501000010000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................ACGAAATGTAGGCAGGCACTC......................................................................................2120.501000000000000000000000000010000000000000000000000000000000000000
....................................................................................................................................................................................................ACCGAACGAAATGTAGGCAGG...........................................................................................2120.501000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................CTTGCCTCTGTTGTACCGAACGAAA.....................................................................................................2520.501000000100000000000000000000000000000000000000000000000000000000
........................AAACCAGGAGCTATGGACGCC.......................................................................................................................................................................................................................................................................2120.501000000000000000000000000000000000000000000010000000000000000000
.............................................................................................................TAGACTAACACAAGTAGCATAGCTAGAG...........................................................................................................................................................................2820.501000000000000000000000000000000000000100000000000000000000000000
droMoj3
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAGTGCGCCTGACGAAGGAGGGCGAACGCAAGAGGAGGGTGGCCAACATTGCGCAGCTGAAGCCATTCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................CAACATTGCGCAGCTGAAGCCATTC.2590.111100000
.........................................................................................................................................................................................................................................................................CGCAAGAGGAGGGTGGCCAACATTG..................25200.051100000

Generated: 05/16/2015 at 09:47 PM