ID:

dvi_22259

 Coordinate:

scaffold_13246:2000114-2000264 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.2 -12.7

Flybase annnotation

exon [dvir_GLEANR_16714:2]; CDS [Dvir\pdm2-cds]; intron [Dvir\pdm2-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGTGGCAACCGGCAGCCAGCCAGCGTTGGCACCCTTTGGCCTCGATCTCGGTCTGGGTCTGGGCCTGGGTTTGGGTCTCGGTCTGGGCCCGGAGCCGCAGACATGTCTGCCATATTTTGGCCTCGAAATGCCGTCCACAGCAGCCGTCACGGCCAAGGCGCACAAATTGCTGCCAGAGTTCTTGATACCGCTGCACGAAATCATGTTTCAACATCATTATCAGCAGCAGCAACAACAGCAGCAGCAGCAAC
****************************************************************************************************************************..............((.....((((..((...((((((.....))).)))...))...))))....))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V053
head
 SRR060667
160_females_carcasses_total
 M028
head
 SRR060665
9_females_carcasses_total
 V116
male body		 M027
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060668
160x9_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR060684
140x9_0-2h_embryos_total
 V047
embryo
.........................................................................................................................................................................................................CATGTTTCAACATCATTATCAGCAGC........................ 26 0 1 4.00 4 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................GCCAGAGTTCTTGATACCGCT........................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CATGTTTCAACATCATTATCAGCA.......................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTATCAGCAGCAGCAACAACA.............. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................GCTGCCAGAGTTCTTGATACCGCT........................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TCAACATCATTATCAGCAGCAGCAA................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTATCAGCAGCAGCAACAACAGCA........... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GAAATGCCGTCCACAGCAGCCGTCACGGC.................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CGAGATCATGTTGCAACCTCATT................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CAACCGGCAGCCAGCCAGCGTTGG.............................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TCTTGATACCGCTGCACGAAAT.................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CATTATCAGCAGCAGCAACAACAGCAG.......... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GGGCCCGGAGCCGCAGACA.................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CAGCAGCCGTCACGGCCAAGGC............................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CAGAGTTCTTGATACCGCT........................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GCAGCCAGCCAGCGTTGG.............................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GTCCACAGCAGCCGTCACGGCCAAG.............................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTTTCAACATCATTATCAGC........................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GATCTCGGTCTGGGTCTG.............................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CTTGATACCGCTGCACGAAATCATG.............................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTTTCAACATCATTATCAGCAGC........................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GCACGAAATCATGTTCCAACATC.................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AGAGTTCTTGATACCGCTGCACGAAAT.................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................GCACAAATTGCTGCCAGAGTTCTT.................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................CCTCGATCTCGGTCTGGGTCTGGGCCT......................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGACATGTCTGCCATATTTTGGCCTCG.............................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CATGTTTCAACATCATTATCAGCAGCA....................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTTTCAACATCATTATCAGCAGCAGC..................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GCCAAGGCGCACAAATTGCTGC.............................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTTGGGTCTCGGTCTGGGCCCGGAGC............................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GTCTCGGTCTGGGCCCGGAGCCGCAGA...................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................CGTCCACAGCTGCCGTCAC..................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTTTCAACATCATTATCAGCAG......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CATTATCAGCAGCAGCAACAACA.............. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGATACCGCTGCACGAAAT.................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TATCAGCAGCAGCAACAACAGC............ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GGCCTCGATCTCGGTCTGG................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................ACATGTCTGCCATATTTTGGCCTCGAAA........................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CAAGGCGCACAAATTGCTGCC............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ACCCTGTGGCCTCGAACTTGG........................................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................CTCGGTTTCGACCCGGAGCC........................................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GCAACCGGCAGCAAGCAAG.................................................................................................................................................................................................................................... 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AGCAACAACAGCAGCAGCAGCA.. 22 0 20 0.15 3 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0
...........................................................................................................................CGAAATTCCGTCCCCTGCA............................................................................................................. 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCAGCAGCAGCAACAACAGCAGC......... 23 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGCAGCAGCAACAACAGCAGCA........ 22 0 20 0.10 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................GGTCTGGGTCTGGTCCTGG....................................................................................................................................................................................... 19 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ATCAGCAGCAGCAACAACAGC............ 21 0 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGCAGCAGCAACAACAGCAGCAGC...... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GCAGCAGCAACAACAGCAGCA........ 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGCAGCAACAACAGCAGCA........ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CAGCAGCAGCAACAACAGCAGCAGCA..... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCA.. 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CAACAACAGCAGCAGCAGC... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................AACAACAGCAGCAGCAGCA.. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AGCAGCAACAACAGCAGCAGCAGCA.. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................CAGCAGCAGCAACAACAGCAGCA........ 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GCAGCAGCAACAACAGCAG.......... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AGCAACAACAGCAGCAGCA..... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................AGCAGCAACAACAGCAGCAGCA..... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACACCGTTGGCCGTCGGTCGGTCGCAACCGTGGGAAACCGGAGCTAGAGCCAGACCCAGACCCGGACCCAAACCCAGAGCCAGACCCGGGCCTCGGCGTCTGTACAGACGGTATAAAACCGGAGCTTTACGGCAGGTGTCGTCGGCAGTGCCGGTTCCGCGTGTTTAACGACGGTCTCAAGAACTATGGCGACGTGCTTTAGTACAAAGTTGTAGTAATAGTCGTCGTCGTTGTTGTCGTCGTCGTCGTTG
***********************************************************..............((.....((((..((...((((((.....))).)))...))...))))....))**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060654
160x9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060666
160_males_carcasses_total
 V116
male body		 M027
male body		 SRR060675
140x9_ovaries_total
 V053
head
...................................................................................................................................................................................AGCACTATGGCGAAGTGCT..................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAGTAGAAAGTAGTAGTAATAG.............................. 22 2 2 0.50 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................AAGTCGTAGGAATAGTCGTC......................... 20 2 3 0.33 1 0 0 1 0 0 0 0
......................................................................................................................................GGTGTCGTAGGCATTGCTGG................................................................................................. 20 3 11 0.09 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................GTCGTCGTTGTTGTCGTC.......... 18 0 20 0.05 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................................AATAGTCGTCGTTGTTGTTGT.............. 21 1 20 0.05 1 0 0 0 0 0 1 0
........................................................................................................................................TGTCGGCGACAGTGCGGGTT............................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13246:2000064-2000314 + dvi_22259 TGT-G--GCA---ACCGGCA-G------------------CCAGCCAG--CGT-------TGG--CA----CCCTTTGGCCTCGATCTCGGTCTGGGTCTGGGCCTGGGT-TTGGGTCTCGGTC--------------------------------------------------------------------------------T----GGG---------------------CCCGGAGCCG--------------------------------------------CAGACATGTCTGCC---A-----------------TATTTTGGCCTCGAAATGCCGTC----------------------------------------------------------------------------------------------CACAG----------------CAGCCGTCACGGCCAAGGCGCA--CAAATTGCTGCCAGAGTTCTTGATACCGCTGCACGAAATCAT-GTTTC---A------ACATCATTATCAGC---AGCAGCAACAACA-GCAGCAGCAGCAAC
droMoj3 scaffold_6500:3966902-3967131 - TGT-G--GCA---GCTAGCA-G------------------TCAGGCGG--CGT-------TGC--CA----CCCTTTGGCGTCGGGCTCGGACTGGGTGTGGGCGTGGGC----------------------------------------------------------------------------------------------------------------------GCGGGCCTGGAGCCG--------------------------------------------CAGACATGTCTGCC---A-----------------TATTTTGGCTACGAAA--------------------CAG---------------------------------------------------------------------------------------------------CAGCCGTCACGGCGAAAGCGCA--CAAATTGCTGCCAGAGTTTTTGATACCATTGCATGAAATTAT-GTTTC---A------ACATCATTATCAAC---AACAACAACAACA-ACAACAACAGCAGC
droGri2 scaffold_15252:15279405-15279719 - CGT-G--CCA---CCAACCACAACAACAACGACAACAGCAGCAA---------------------CA----ACATTTGGCGTCGATGTTGGCATGGGTTTGAATTTGGGC-TTGGGCTTAGGAGTGGGCGTGGCTGGCGTTGGGGTT------------------------------------------------GGGGGTGGC------------------------GGTGGA-----GT------GGGAGTTGCGGGGGAGTCGCC------------------GCAGACATGTCTGCC---A-----------------TATTTTGGCATGGAAATGG--AAATG---C-----------------------------------------------------------CGT---------------C---------AACAA----------------CAACCGTCTCCGCCAAAGCACA--CAAATTGCTGCCCGAATTTCTGATACCGTTGCATGAAATCAT-GTTTC---A------ACATCATTATCAAC---AGCAACGACAACAAGTTGTGGCAGCAAC
droWil2 scf2_1100000004521:10531964-10532187 + TAT-A--ACC-----GTGC--A------------------ACAGCT--GATGT----------TG--------------------------------------------------------------------------------------------------------C------------------CGTTTC----------TAAGAGA-------------------TGGC--------------------GGAGCCACAGCAGATGGAGCCGGGGGTATAGGGCAGACATGTCTGCC---A-----------------TATTTCGGTTCGACGA---CAACATC---TGTCAATTC-----------------------------------------------------------------------------------------------------------------AAAGCTGGA--GAAATCCCTGCCAGACTTTCTAATGCCATTGCATGAAATTAT-GTTCC---A------CCATCATCATCATCATCAGCATCATCAGCA-TGCCCAAGAATATC
dp5 4_group3:3421379-3421626 + GGC-AGC--A---ACAGGGACA------------------TCAACAAGGATAT----------GGC-----------------------------------------------------------------------------------------------------------ACAC---ATGACTTCCGC-TC----------TG---GAGGGAGGAGCCATG-GGGGATGGC-----------------------------------------------------CAGACATGTCTGCTACCGGCCCCA--------TCATATTTTGGCATGGAAACACTGGCATC---TGTCAAGCAGCAG--------------------------------------CAGCAGCAGC------------ATC-----------------AG------------CA-------------------TCA--GAAATCCCTGCCAGACTTTCTAATACCATTGCATGAAATTAT-GTTCC---A------ACAACATCATTATC---AGCAG--AGAACA-GCAGCAGCAGCGGC
droPer2 scaffold_1:4897978-4898224 + GC--AGC--A---ACAGGGACA------------------TCAACAAGGATAT----------GGC-----------------------------------------------------------------------------------------------------------ACAC---ATGACTTCCGC-TC----------TG---GAGGGAGGAGCCATG-GGGGATGGC-----------------------------------------------------CAGACATGTCTGCTGCCGGCCCCA--------TCATATTTTGGCATGGAAACACTGTCATC---TGTCAAGCAGCAG--------------------------------------CAGCAGCAGC------------ATC-----------------AG------------CA-------------------TCA--GAAATCCCTGCCAGACTTTCTAATACCATTGCATGAAATTAT-GTTCC---A------ACAACATCATTATC---AGCAG--AGAACA-GCAGCAGCAGCGGC
droAna3 scaffold_13340:182155-182368 + GTC-C--GCA---GCCTCT----------------------------------------------------------------------------GTCTCAGCCTCAGTC-TCTGTCTCAGTCG------------CAGCCAAAGTCGAAGTCCTAGTTTCTGCCGCCG---------------------T-CG------------------------------------CAGT-------------CAGCAGCGCATCCACAACACCCAAAAC-------------CAACCACCGCCGCC---A-----------------CACACCTCCACCGAAG----------------------------------------------------------------------------------------------------------------------------------------------CA--G--ACGTCAGCGAACCCTGCCAACACCACCCCCC-----------------A------GCAACATCG-CAGC---AGCATCAAGAACA-ACAGCAGCAGCAAC
droBip1 scf7180000396580:796750-797029 + TGG---C--A---GCGGGGAGC------------------TGGCGAAAGATGT----------TG--------------------------------------------------------------------------------------------------------CCCCGCAG---ATGACTTCCGCATGTCTC------TACCCGA-----------TG-GAGGATGCC-----------------------------------------------------CAGACATGTCTGCC---GGCC-----------TCGTATTTTGGCATGGAAACGCTGGCATC---CATCAAACAC--------------------CAACAACTCCAGCAACAACTACAGCAACGCCATCAGAACCAGCACCAGCAACAGCAGC-----AGCACCAGCCAACGAG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCTCTGCACGAAATTAT-GTTCC---AACAGCAACAACACCATTACC---AACAA-----------------------
droKik1 scf7180000302472:1067100-1067324 + CGT-G--G-----ACAGCGGCA------------------TCAACAAGGATGT-------CGT--CG-C---CGT-----------------------------------------------------------------------------------------------TCCGCAGATGATGACTTCCGCCTGTAGCCG------CCTGC------TGCCGCCGGAGGATGGT---CAGCAG--------------------------------------------CAGACATGTCTGCC---GGTC-----------TCATATTTTGGCATGGAAACGCTGGCTTCAACGGTCAAGCAG-------------------------------------------------------------------------------------------------CG-------------------CCA--GAAATCCCTGCCAGACTTTCTAATACCGCTGCACGAAATTAT-GTTCC---A------ACAACATCATTACC---AGCA------------------------
droFic1 scf7180000452061:10355-10542 + GG---------------GGAAA------------------TCAACAAGGATGT----------CG---C---CA-----------------------------------------------------------------------------------------------TCCAGCAG---ATGACTTCCTCATGTGG------C------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---ACTC--------GCCTCGTATTTTGGCATGGATACGCTGGCATC---TGTCAAACAG-------------------------------------------------------------------------------------------------CG-------------------GCA--GAAATCCCTGCCAGACTTTCTAATACCGCTGCACGAAATTAT-GTTCC---A------ACAACATCATTACC---AGCA------------------------
droEle1 scf7180000491282:144293-144483 - GCA---CT---------------------------------CA----C--TGT----------CG---CCGCCCCACAGTGTGGGTGTGGGTGTGGGTGTGGGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGTTGGCGTGGGCGTGGGCGTGGC---TGGCGAGGAT-----------------------------------------------------------------C-----------------AG------------CA-------------------CCGCAGAGCCTCGCTGCAGGGTGTCCAGGAGAAGCTCACCCAGCTGCAGATGCAACA------GCAACATCACCAGC---AGCAGCAGCAGCA-TCAACAGCAGCAAC
droRho1 scf7180000779506:63634-63850 + GCC-G--C-C-G-TCGGCG----------------------------------------------------GACTCGGGCATTGGGATGGACCTGGGCCTGGGCGTGGGC-ATGGG------------------------------------CATGGGCATGGTCATGG---------------------------------------------------------------------------------------------------------------------------GCGTGGGCA---A-----------------CAAGCATGCTTCGAAG--------------------CAGCAGCCGCCTTTACCGGTGGTCAACTGCAACAACAATAACAACGGCAGCGGC--------------------------------------------------------------------------AATAGCGTTAGGAGCTGCAA-------------------------C---A------ACGGCAGCAGCAGC---AGCAGCAGCAACA-GCCACAGCAGCAGC
droBia1 scf7180000301760:2808298-2808516 + CGG---C--G---GCCGCGGCG------------------GCAGCCGTTGCCTCGTCCGTAGC--CA-----CCTCCGTCTCCGTGTCCGTTTCCGGCTCGGGAGCGGGCTCCGCATCGGGATC--------------------------------------------------------------------------------G----GGT---------------------TCCGGAGCCGCAGCCAGTGC----------------------------------CTCAGCCAGCGCAG---CGAC-----------T--------------GGAG--------------------CAG---------------------------------------------------------------------------------------------------CAGCG---------------------------GTCCTGAGCCTGGAGAACAGCTTCACCCAGCCAG-GC-----------------AACCCCCACC---AGCAACAGCAGCC-GCAGCAGCAGCAAC
droTak1 scf7180000413103:22562-22818 + TGT-T--GCC---GCCGG--CG------------------ATAATATAAGCGT-------GAG--CAAT--CCCTTCG---AGGATCCTGGTCCTGGCCCAGGTCCAGGT-GCTGGTCCCGGTG------------GTGCTGGAGCTGGAGCTGTT---------------------------GC--------------------------------TGCTGTG-GGCGGTGGTCCG--------------------------------------------------CAACCACATCCACC---GCCCCCACATTCACCG--CA---CACCGCAGCCCAACAGGCGGC---CGGCCAACAGCAG--------------------------------------CAGCAGCAGC------------ATC---------------------------------------------------------------------------CTCAGCATCAGCATCCT------------------------GGGCTGCCGGGGC---C---ACCGCCGCC-ACAGCAGCAACAGC
droEug1 scf7180000409122:1063843-1064034 + AATCAGC--A---GCGGGGAAA------------------TCAACAAGGATGT----------TG--------------------------------------------------------------------------------------------------------GCCAACAG---ATGACTTCCGCATGTGG------C------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---AGTC-----------TCGTATTTTGGCATGGAGACGCTGGCATC---TGTCAAACAG-------------------------------------------------------------------------------------------------AG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCGTTGCACGAAATTAT-GTTCC---A------ACAACATCATTACC---AGCA------------------------
dm3 chr2L:12672902-12673085 + C-----------------------------------------AACAAGGATGT----------TA--------------------------------------------------------------------------------------------------------GCCAGCAG---ATGACTTCCGCATGTGGCGGTAGC------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---AGTC-----------TCGTATTTTGGCATGGAGACGCTGGCATC---TGTCAAACAG-------------------------------------------------------------------------------------------------AG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCACTGCACGAAATTAT-GTTCC---A---GCAACAACATCATTACC---AGCAA-----------------------
droSim2 2l:12321902-12322100 + CGG---C--A---GCGGGGAAA------------------TCAACAAGGATGT----------TG--------------------------------------------------------------------------------------------------------GCCAGCAG---ATGACTTCCGCATGTGGCGGTGGC------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---AGTC-----------TCGTATTTTGGCATGGAGACGCTGGCATC---TGTCAAACAG-------------------------------------------------------------------------------------------------AG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCGCTGCACGAAATTAT-GTTCC---A---GCAACAACATCATTACC---AGCAA-----------------------
droSec2 scaffold_16:857125-857324 + CAG---C--GGGTGCGGGGAAA------------------TCAACAAGGATGT----------TG--------------------------------------------------------------------------------------------------------GCCAGCAG---ATGACTTCCGCATGTGGCGGTGGC------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---AGTC-----------TCGTATTTTGGCATGGAGACGCTGGCATC---TGTCAAACAG-------------------------------------------------------------------------------------------------AG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCGCTGCACGAAATTAT-GTTCC---A---GCAACAACATCATTACC---AGC-------------------------
droYak3 2L:4626668-4626884 - CAA---C--C--------------------------------AGACAG--AGC-------ACG--AG----CCTTTTGGCATGAGCCTC-CTCCAAGTCTGAATCTGAAT-CTGAATCTCAG--------------------------------------------------------------------TCTGGGGCTGATGC------------------------TGAGGC-----------------------------------------------------TGAGGCTGAGTCAG---GGGC-----------TCGAGCTCTGACATGGGTT----GTTCTT-------------------------------------------------------------------------------------------------------------------------------------T--GGACTCCCTGCCA--CCTTGGAAT--AGGCAAAATTAACTAA-ATTAC---A------ACATCAACATCAAC---GGCAGCAACTGCA-GCAACAGCAGCGAA
droEre2 scaffold_4929:12749888-12750071 - GG-----------------AAA------------------TCAACAAGGATGT----------TG--------------------------------------------------------------------------------------------------------GCCAGCAG---ATGACTTCCGCATGTGG------C------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---AGTC-----------TCGTATTTTGGCATGGAGACGCTGGCATC---TATCAAACAG-------------------------------------------------------------------------------------------------AG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCGCTGCACGAAATTAT-GTTCC---A---GCAACAACATCATTACC---AGCAA-----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TGT-G--GCA---ACCGGCA-G------------------CCAGCCAG--CGT-------TGG--CA----CCCTTTGGCCTCGATCTCGGTCTGGGTCTGGGCCTGGGT-TTGGGTCTCGGTC--------------------------------------------------------------------------------T----GGG---------------------CCCGGAGCCG--------------------------------------------CAGACATGTCTGCC---A-----------------TATTTTGGCCTCGAAATGCCGTC----------------------------------------------------------------------------------------------CACAG----------------CAGCCGTCACGGCCAAGGCGCA--CAAATTGCTGCCAGAGTTCTTGATACCGCTGCACGAAATCAT-GTTTC---A------ACATCATTATCAGC---AGCAGCAACAACA-GCAGCAGCAGCAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-GTTTC---A------ACATCATTATCAGC---AGC.........................2614.004003000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGAGTTCTTGATACCGCT.........................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-GTTTC---A------ACATCATTATCAGC---A...........................2412.002002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAGC---AGCAGCAACAACA-..............2212.002002000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCAGAGTTCTTGATACCGCT.........................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---A------ACATCATTATCAGC---AGCAGCAA....................2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAGC---AGCAGCAACAACA-GCA...........2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GAAATGCCGTC----------------------------------------------------------------------------------------------CACAG----------------CAGCCGTCACGGC..................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
........CA---ACCGGCA-G------------------CCAGCCAG--CGT-------TGG--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATACCGCTGCACGAAAT................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTATCAGC---AGCAGCAACAACA-GCAG..........2711.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GGG---------------------CCCGGAGCCG--------------------------------------------CAGACA......................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG----------------CAGCCGTCACGGCCAAGGC............................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGTTCTTGATACCGCT.........................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................GCA-G------------------CCAGCCAG--CGT-------TGG--..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................GTC----------------------------------------------------------------------------------------------CACAG----------------CAGCCGTCACGGCCAAG..............................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTC---A------ACATCATTATCAGC---............................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................GATCTCGGTCTGGGTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATACCGCTGCACGAAATCAT-G...........................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTC---A------ACATCATTATCAGC---AGC.........................2311.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTTCTTGATACCGCTGCACGAAAT................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA--CAAATTGCTGCCAGAGTTCTT..................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................CCTCGATCTCGGTCTGGGTCTGGGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................AGACATGTCTGCC---A-----------------TATTTTGGCCTCG............................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-GTTTC---A------ACATCATTATCAGC---AGCA........................2711.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTC---A------ACATCATTATCAGC---AGCAGC......................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGGCGCA--CAAATTGCTGC............................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................T-TTGGGTCTCGGTC--------------------------------------------------------------------------------T----GGG---------------------CCCGGAGC..........................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................GTCTCGGTC--------------------------------------------------------------------------------T----GGG---------------------CCCGGAGCCG--------------------------------------------CAGA........................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTC---A------ACATCATTATCAGC---AG..........................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTATCAGC---AGCAGCAACAACA-..............2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATACCGCTGCACGAAAT................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGC---AGCAGCAACAACA-GC............2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................GGCCTCGATCTCGGTCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................ACATGTCTGCC---A-----------------TATTTTGGCCTCGAAA.........................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCGCA--CAAATTGCTGCC...........................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACA-GCAGCAGCAGCA..22200.153000000000000000001000000000000010100000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGC---AGCAGCAACAACA-GCAGC.........23100.101001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCAGCAACAACA-GCAGCA........22200.102001000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGC---AGCAGCAACAACA-GC............21140.071000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCAGCAACAACA-GCAGCAGC......24200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAGCAACAACA-GCAGCA........21200.051000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACA-GCAGCA........19200.051000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAGCAACAACA-GCAGCAGCA.....26200.051000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA-GCAGCAGCAGCA..20200.051000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA-GCAGCAGCAGC...19200.051000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA-GCAGCAGCAGCA..19200.051000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACA-GCAGCAGCAGCA..25200.051000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGCAGCAACAACA-GCAGCA........23200.051000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAGCAACAACA-GCAG..........19200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACA-GCAGCAGCA.....19200.051000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACA-GCAGCAGCA.....22200.051000000000000000000100000000000000000000000000000000000000000000
droMoj3
TGT-G--GCA---GCTAGCA-G------------------TCAGGCGG--CGT-------TGC--CA----CCCTTTGGCGTCGGGCTCGGACTGGGTGTGGGCGTGGGC----------------------------------------------------------------------------------------------------------------------GCGGGCCTGGAGCCG--------------------------------------------CAGACATGTCTGCC---A-----------------TATTTTGGCTACGAAA--------------------CAG---------------------------------------------------------------------------------------------------CAGCCGTCACGGCGAAAGCGCA--CAAATTGCTGCCAGAGTTTTTGATACCATTGCATGAAATTAT-GTTTC---A------ACATCATTATCAAC---AACAACAACAACA-ACAACAACAGCAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATGAAATTAT-GTTT........................................................1911.001100000
droGri2
CGT-G--CCA---CCAACCACAACAACAACGACAACAGCAGCAA---------------------CA----ACATTTGGCGTCGATGTTGGCATGGGTTTGAATTTGGGC-TTGGGCTTAGGAGTGGGCGTGGCTGGCGTTGGGGTT------------------------------------------------GGGGGTGGC------------------------GGTGGA-----GT------GGGAGTTGCGGGGGAGTCGCC------------------GCAGACATGTCTGCC---A-----------------TATTTTGGCATGGAAATGG--AAATG---C-----------------------------------------------------------CGT---------------C---------AACAA----------------CAACCGTCTCCGCCAAAGCACA--CAAATTGCTGCCCGAATTTCTGATACCGTTGCATGAAATCAT-GTTTC---A------ACATCATTATCAAC---AGCAACGACAACAAGTTGTGGCAGCAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAT-A--ACC-----GTGC--A------------------ACAGCT--GATGT----------TG--------------------------------------------------------------------------------------------------------C------------------CGTTTC----------TAAGAGA-------------------TGGC--------------------GGAGCCACAGCAGATGGAGCCGGGGGTATAGGGCAGACATGTCTGCC---A-----------------TATTTCGGTTCGACGA---CAACATC---TGTCAATTC-----------------------------------------------------------------------------------------------------------------AAAGCTGGA--GAAATCCCTGCCAGACTTTCTAATGCCATTGCATGAAATTAT-GTTCC---A------CCATCATCATCATCATCAGCATCATCAGCA-TGCCCAAGAATATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................GATGGAGCCGGGGGTATAGGGC...........................................................................................................................................................................................................................................................................................................2213.00300300
................................................................................................................................................................................................................................................................................................AGACATGTCTGCC---A-----------------TATTTCGGTT...............................................................................................................................................................................................................................................................2411.00101000
...................................................................................................................................................................................................................................................................CACAGCAGATGGAGCCGGGG....................................................................................................................................................................................................................................................................................................................2011.00100100
......................................................................................................................................................................................................................................................................................................................................................AACATC---TGTCAATTC-----------------------------------------------------------------------------------------------------------------AAAGCTGGA--GA.....................................................................................................2611.00100010
..........................................................................................................................................................................................................................................................................GATGGAGCCGGGGGTATAGGGCA..........................................................................................................................................................................................................................................................................................................2311.00100100
.............................................................................................................................................................................................GTTTC----------TAAGAGA-------------------TGGC--------------------GGA..........................................................................................................................................................................................................................................................................................................................................1911.00100010
.............................................................................................................................................................................................GTTTC----------TAAGAGA-------------------TGGC--------------------GGAGCCACAGCA.................................................................................................................................................................................................................................................................................................................................2811.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCATCATCATCATCAGCA........................21190.05100010
dp5
GGC-AGC--A---ACAGGGACA------------------TCAACAAGGATAT----------GGC-----------------------------------------------------------------------------------------------------------ACAC---ATGACTTCCGC-TC----------TG---GAGGGAGGAGCCATG-GGGGATGGC-----------------------------------------------------CAGACATGTCTGCTACCGGCCCCA--------TCATATTTTGGCATGGAAACACTGGCATC---TGTCAAGCAGCAG--------------------------------------CAGCAGCAGC------------ATC-----------------AG------------CA-------------------TCA--GAAATCCCTGCCAGACTTTCTAATACCATTGCATGAAATTAT-GTTCC---A------ACAACATCATTATC---AGCAG--AGAACA-GCAGCAGCAGCGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................ACAAGGATAT----------GGC-----------------------------------------------------------------------------------------------------------ACAC---ATGACTTCC..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
...................ACA------------------TCAACAAGGATAT----------GGC-----------------------------------------------------------------------------------------------------------ACAC---.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.............................................................................................................................................................................ACAC---ATGACTTCCGC-TC----------TG---GAGG......................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................................ATGGAAACACTGGCATC---TGTCAAGCA...................................................................................................................................................................................................................................2611.0010000100000
................................................................................................................................................................................................................................................................................................................................................AACACTGGCATC---TGTCAAGC....................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCCCTGCCAGACTTT....................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................ACTGGCATC---TGTCAAGCAGCAG--------------------------------------C........................................................................................................................................................................................2311.0010100000000
.........................................CAACAAGGATAT----------GGC-----------------------------------------------------------------------------------------------------------ACAC---.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................................................................C-----------------------------------------------------------------------------------------------------------ACAC---ATGACTTCCGC-TC----------TG---GA........................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATC---AGCAG--AGAACA-GCAGCAGCA.....2611.0010100000000
....AGC--A---ACAGGGACA------------------TCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...................................................................................................................................................................................................................GGGAGGAGCCATG-GGGGATGGC-----------------------------------------------------............................................................................................................................................................................................................................................................................................................2211.0010000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---AGCAG--AGAACA-GCAGCAGCAGCGGC2811.0010000000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTATC---AGCAG--AGAAC................1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATC---AGCAG--AGAACA-GCAGC.........2211.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................C---TGTCAAGCAGCAG--------------------------------------CAGCAGCAGC------------...................................................................................................................................................................2420.5010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC------------ATC-----------------AG------------CA-------------------TCA--.......................................................................................................19200.0510000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-GCAGCAGCAGCGGC18200.0510100000000
droPer2
GC--AGC--A---ACAGGGACA------------------TCAACAAGGATAT----------GGC-----------------------------------------------------------------------------------------------------------ACAC---ATGACTTCCGC-TC----------TG---GAGGGAGGAGCCATG-GGGGATGGC-----------------------------------------------------CAGACATGTCTGCTGCCGGCCCCA--------TCATATTTTGGCATGGAAACACTGTCATC---TGTCAAGCAGCAG--------------------------------------CAGCAGCAGC------------ATC-----------------AG------------CA-------------------TCA--GAAATCCCTGCCAGACTTTCTAATACCATTGCATGAAATTAT-GTTCC---A------ACAACATCATTATC---AGCAG--AGAACA-GCAGCAGCAGCGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................GAGGAGCCATG-GGGGATGGC-----------------------------------------------------CA..........................................................................................................................................................................................................................................................................................................2211.001000001
...................................................................................................................................................................................................................................................................................................................................ATTTTGGCATGGAAACACTGTC..................................................................................................................................................................................................................................................2211.001001000
.................................................................................................................................................................................................................................................................................................................................................ACACTGTCATC---TGTCAAGC....................................................................................................................................................................................................................................1911.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC------------ATC-----------------AG------------CA-------------------TCA--GA.....................................................................................................2060.171010000
droAna3
GTC-C--GCA---GCCTCT----------------------------------------------------------------------------GTCTCAGCCTCAGTC-TCTGTCTCAGTCG------------CAGCCAAAGTCGAAGTCCTAGTTTCTGCCGCCG---------------------T-CG------------------------------------CAGT-------------CAGCAGCGCATCCACAACACCCAAAAC-------------CAACCACCGCCGCC---A-----------------CACACCTCCACCGAAG----------------------------------------------------------------------------------------------------------------------------------------------CA--G--ACGTCAGCGAACCCTGCCAACACCACCCCCC-----------------A------GCAACATCG-CAGC---AGCATCAAGAACA-ACAGCAGCAGCAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................GCC---A-----------------CACACCTCCACCGAAG----------------------------------------------------------------------------------------------------------------------------------------------CA--.......................................................................................................2211.001010000
.....................................................................................................................................................................................................................................................................................................................................ACCTCCACCGAAG----------------------------------------------------------------------------------------------------------------------------------------------CA--G--ACGTCAGCG...........................................................................................2511.001100000
..................................................................................................................................................CGAAGTCCTAGTTTCTGCCGCCG---------------------T-...........................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......................................................................................................................................................................................................................................................................................................................................CTCCACCGAAG----------------------------------------------------------------------------------------------------------------------------------------------CA--G--ACGTCAGCGAACCC......................................................................................2811.001010000
droBip1
TGG---C--A---GCGGGGAGC------------------TGGCGAAAGATGT----------TG--------------------------------------------------------------------------------------------------------CCCCGCAG---ATGACTTCCGCATGTCTC------TACCCGA-----------TG-GAGGATGCC-----------------------------------------------------CAGACATGTCTGCC---GGCC-----------TCGTATTTTGGCATGGAAACGCTGGCATC---CATCAAACAC--------------------CAACAACTCCAGCAACAACTACAGCAACGCCATCAGAACCAGCACCAGCAACAGCAGC-----AGCACCAGCCAACGAG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCTCTGCACGAAATTAT-GTTCC---AACAGCAACAACACCATTACC---AACAA-----------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGT-G--G-----ACAGCGGCA------------------TCAACAAGGATGT-------CGT--CG-C---CGT-----------------------------------------------------------------------------------------------TCCGCAGATGATGACTTCCGCCTGTAGCCG------CCTGC------TGCCGCCGGAGGATGGT---CAGCAG--------------------------------------------CAGACATGTCTGCC---GGTC-----------TCATATTTTGGCATGGAAACGCTGGCTTCAACGGTCAAGCAG-------------------------------------------------------------------------------------------------CG-------------------CCA--GAAATCCCTGCCAGACTTTCTAATACCGCTGCACGAAATTAT-GTTCC---A------ACAACATCATTACC---AGCA------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GG---------------GGAAA------------------TCAACAAGGATGT----------CG---C---CA-----------------------------------------------------------------------------------------------TCCAGCAG---ATGACTTCCTCATGTGG------C------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---ACTC--------GCCTCGTATTTTGGCATGGATACGCTGGCATC---TGTCAAACAG-------------------------------------------------------------------------------------------------CG-------------------GCA--GAAATCCCTGCCAGACTTTCTAATACCGCTGCACGAAATTAT-GTTCC---A------ACAACATCATTACC---AGCA------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCA---CT---------------------------------CA----C--TGT----------CG---CCGCCCCACAGTGTGGGTGTGGGTGTGGGTGTGGGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCGTTGGCGTGGGCGTGGGCGTGGC---TGGCGAGGAT-----------------------------------------------------------------C-----------------AG------------CA-------------------CCGCAGAGCCTCGCTGCAGGGTGTCCAGGAGAAGCTCACCCAGCTGCAGATGCAACA------GCAACATCACCAGC---AGCAGCAGCAGCA-TCAACAGCAGCAACSizeHit CountTotal NormTotal
No Reads
droRho1
GCC-G--C-C-G-TCGGCG----------------------------------------------------GACTCGGGCATTGGGATGGACCTGGGCCTGGGCGTGGGC-ATGGG------------------------------------CATGGGCATGGTCATGG---------------------------------------------------------------------------------------------------------------------------GCGTGGGCA---A-----------------CAAGCATGCTTCGAAG--------------------CAGCAGCCGCCTTTACCGGTGGTCAACTGCAACAACAATAACAACGGCAGCGGC--------------------------------------------------------------------------AATAGCGTTAGGAGCTGCAA-------------------------C---A------ACGGCAGCAGCAGC---AGCAGCAGCAACA-GCCACAGCAGCAGCSizeHit CountTotal NormTotal
No Reads
droBia1
CGG---C--G---GCCGCGGCG------------------GCAGCCGTTGCCTCGTCCGTAGC--CA-----CCTCCGTCTCCGTGTCCGTTTCCGGCTCGGGAGCGGGCTCCGCATCGGGATC--------------------------------------------------------------------------------G----GGT---------------------TCCGGAGCCGCAGCCAGTGC----------------------------------CTCAGCCAGCGCAG---CGAC-----------T--------------GGAG--------------------CAG---------------------------------------------------------------------------------------------------CAGCG---------------------------GTCCTGAGCCTGGAGAACAGCTTCACCCAGCCAG-GC-----------------AACCCCCACC---AGCAACAGCAGCC-GCAGCAGCAGCAACSizeHit CountTotal NormTotal
No Reads
droTak1
TGT-T--GCC---GCCGG--CG------------------ATAATATAAGCGT-------GAG--CAAT--CCCTTCG---AGGATCCTGGTCCTGGCCCAGGTCCAGGT-GCTGGTCCCGGTG------------GTGCTGGAGCTGGAGCTGTT---------------------------GC--------------------------------TGCTGTG-GGCGGTGGTCCG--------------------------------------------------CAACCACATCCACC---GCCCCCACATTCACCG--CA---CACCGCAGCCCAACAGGCGGC---CGGCCAACAGCAG--------------------------------------CAGCAGCAGC------------ATC---------------------------------------------------------------------------CTCAGCATCAGCATCCT------------------------GGGCTGCCGGGGC---C---ACCGCCGCC-ACAGCAGCAACAGCSizeHit CountTotal NormTotal
No Reads
droEug1
AATCAGC--A---GCGGGGAAA------------------TCAACAAGGATGT----------TG--------------------------------------------------------------------------------------------------------GCCAACAG---ATGACTTCCGCATGTGG------C------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---AGTC-----------TCGTATTTTGGCATGGAGACGCTGGCATC---TGTCAAACAG-------------------------------------------------------------------------------------------------AG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCGTTGCACGAAATTAT-GTTCC---A------ACAACATCATTACC---AGCA------------------------SizeHit CountTotal NormTotal
No Reads
dm3
C-----------------------------------------AACAAGGATGT----------TA--------------------------------------------------------------------------------------------------------GCCAGCAG---ATGACTTCCGCATGTGGCGGTAGC------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---AGTC-----------TCGTATTTTGGCATGGAGACGCTGGCATC---TGTCAAACAG-------------------------------------------------------------------------------------------------AG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCACTGCACGAAATTAT-GTTCC---A---GCAACAACATCATTACC---AGCAA-----------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAATACCACTGCACGAAATTA..............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................CATGGAGACGCTGGCATC---TGT.........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
CGG---C--A---GCGGGGAAA------------------TCAACAAGGATGT----------TG--------------------------------------------------------------------------------------------------------GCCAGCAG---ATGACTTCCGCATGTGGCGGTGGC------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---AGTC-----------TCGTATTTTGGCATGGAGACGCTGGCATC---TGTCAAACAG-------------------------------------------------------------------------------------------------AG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCGCTGCACGAAATTAT-GTTCC---A---GCAACAACATCATTACC---AGCAA-----------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CAG---C--GGGTGCGGGGAAA------------------TCAACAAGGATGT----------TG--------------------------------------------------------------------------------------------------------GCCAGCAG---ATGACTTCCGCATGTGGCGGTGGC------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---AGTC-----------TCGTATTTTGGCATGGAGACGCTGGCATC---TGTCAAACAG-------------------------------------------------------------------------------------------------AG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCGCTGCACGAAATTAT-GTTCC---A---GCAACAACATCATTACC---AGC-------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................G---ATGACTTCCGCATGTGGCG....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
droYak3
CAA---C--C--------------------------------AGACAG--AGC-------ACG--AG----CCTTTTGGCATGAGCCTC-CTCCAAGTCTGAATCTGAAT-CTGAATCTCAG--------------------------------------------------------------------TCTGGGGCTGATGC------------------------TGAGGC-----------------------------------------------------TGAGGCTGAGTCAG---GGGC-----------TCGAGCTCTGACATGGGTT----GTTCTT-------------------------------------------------------------------------------------------------------------------------------------T--GGACTCCCTGCCA--CCTTGGAAT--AGGCAAAATTAACTAA-ATTAC---A------ACATCAACATCAAC---GGCAGCAACTGCA-GCAACAGCAGCGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GG-----------------AAA------------------TCAACAAGGATGT----------TG--------------------------------------------------------------------------------------------------------GCCAGCAG---ATGACTTCCGCATGTGG------C------------------------GATGGC-----------------------------------------------------CAGACATGTCTGCC---AGTC-----------TCGTATTTTGGCATGGAGACGCTGGCATC---TATCAAACAG-------------------------------------------------------------------------------------------------AG-------------------ACA--GAAATCCCTGCCAGACTTTCTAATACCGCTGCACGAAATTAT-GTTCC---A---GCAACAACATCATTACC---AGCAA-----------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................CAG-------------------------------------------------------------------------------------------------AG-------------------ACA--GAAATCCCTGCCAGACT......................................................................................2511.0010100000

Generated: 05/17/2015 at 04:55 AM