dvi_22233

CDS [Dvir\GJ16212-cds]; CDS [Dvir\GJ16212-cds]; exon [dvir_GLEANR_16656:4]; exon [dvir_GLEANR_16656:5]; intron [Dvir\GJ16212-in]

##################################################---------------------------------------------------------################################################## GGGTTCTATGGTGCGATGCTTGCTCTTTGCTAAAACTTATATAACCAACGGTGTGTATAATAATATTTTTGAATGTTTTGAACGAGTCTTATCATTTCCTTTTACAGTTAATATAACCTCCCCCACATTGTGGTCTGCAACGAACGCCAGCACCGTT ************************************************....................(((((....((.....))....)))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	M061 embryo	SRR060663 160_0-2h_embryos_total	SRR060679 140x9_testes_total	SRR060668 160x9_males_carcasses_total
....................................................................................................................................GTCTGCAACGAACGCCAGCAC....	21	0	1	1.00	1	0	1	0	0	0
....................................................................................................................................GTTTGCAACGAACGCCAGCACC...	22	1	1	1.00	1	0	1	0	0	0
............GCGATGCTTGCTCTTTGCTAA............................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
......................................................................................................................................CTGCAACGAACGCCAGCA.....	18	0	1	1.00	1	0	0	1	0	0
.....................................................................................................TTACAGTTTAGATTACCTCCCC..................................	22	3	1	1.00	1	0	0	0	1	0
....................................................................................................................................GTCTGCAACGAACGCCAGCACC...	22	0	1	1.00	1	1	0	0	0	0
..............................TAAAACTTATATAACCAACGT..........................................................................................................	21	1	1	1.00	1	1	0	0	0	0
.........GTTGCGATGCTTTCTCTTT.................................................................................................................................	19	2	9	0.11	1	0	0	0	0	1

CCCAAGATACCACGCTACGAACGAGAAACGATTTTGAATATATTGGTTGCCACACATATTATTATAAAAACTTACAAAACTTGCTCAGAATAGTAAAGGAAAATGTCAATTATATTGGAGGGGGTGTAACACCAGACGTTGCTTGCGGTCGTGGCAA ************************************************....................(((((....((.....))....)))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060655 9x160_testes_total	V116 male body	SRR060665 9_females_carcasses_total	SRR060678 9x140_testes_total
.......................................................................TTACAAAACTTGCTCAGAATA.................................................................	21	0	1	2.00	2	2	0	0	0
.....................CGAGAAACGTTTTGGAATAGA...................................................................................................................	21	3	4	0.25	1	0	1	0	0
............................................................................AAATTTGCTTTGAATAGTAAA............................................................	21	3	20	0.05	1	0	0	0	1
................ACGAACGAGAAAAGATGT...........................................................................................................................	18	2	20	0.05	1	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_13246:74607-74763 -	dvi_22233	GGGTTCTATGGTGCGATGCTTGCTCTTTGCTAAAACTTATATAACCAACGGTGTGTATAATAAT-------AT---------------------------------------------------------------------------------------------------T-----------------T----------------------------------TT----GAATGTTTTGAACGAGTCTT--------------------------ATC----------------------ATTTCCTTTTACAGTTAATATAACCTCCCCCACATTGTGGTCTGCAACGAACGCCAGCACCGTT
droMoj3	scaffold_6500:131560-131713 -		GGGGTCTATGGTGCGTTGCCTACTCTTCGCTAAAACCTATATAACGAATGGTATGTATGGTAGAAA----------------------------------------------------------------------------------------------------------T-----------------G----------------------------------TC----GGATATCAGGAATAA-----------------------------TTTTT----------------------TTTTTTTTTTTCAGTTAATATAACATCTCCAACTTTGTGGTCTGCCACAAACGCCAGCACTGTT
droGri2	scaffold_15252:17158441-17158598 +		GGGGTCTATGGTGCGTTGCTTAGTCTTTGCTAAAACCTATGTAACCAATGGTGTGTATAATGAC-------A------------------------------------------------------------------------------------------------------CT-----------CTCTTA-----AGT-----------------------------------CTTTGATTTAGTCCT--------------------------ATT----------------------TATTTGCATTGCAGTTAATATTACTTCACCCACTTTATGGTCGGCTACAAACGCGAGCACCGTT
droWil2	scf2_1100000004585:1806239-1806403 +		GGGTTCCATGGTGCGATGTCTGCTCTTTGCCAAGACCTACATAACGAACGGTAATCATTGGATT-------T------------------------------------------------------------------------------------------------------CC-----------CTCTTT-----TTTGTTCCTTTTGGACTACTACATTATTCAAT----------------------------------------------------------------------------TGTCTTTCAGTCAATATAACATCGCCGACTCTGTGGTCAGCTACGAATTCGAGCACTGTT
dp5	4_group2:131685-131852 +		GGGATCCATGGTGCGATGCCTACTGTTCGCTAAAACTTATGTCACCAACGGTAAGTATTCCTAATAAAT--GC---------------------------------------------------------------------------------------------------ATAT----------------------AACA------ATACATTTCGACATTAATTAATTGAA---------------------------------------------------------------------TATTTATTTTCAGTCAACATAACATCGCCGACTTTGTGGTCAGCTACAAACGCTAGTACCGTT
droPer2	scaffold_8:3762856-3763023 -		GGGATCCATGGTGCGATGCCTACTGTTCGCTAAAACTTATGTCACCAACGGTAAGTATTCCTAATAAAT--GC---------------------------------------------------------------------------------------------------ATAT----------------------AACA------ATACATTTCGACATTAATTAATTGAA---------------------------------------------------------------------TATTTATTTTCAGTCAACATAACATCGCCGACTTTGTGGTCAGCTACAAACGCTAGTACCGTT
droAna3	scaffold_12916:1774950-1775105 -		GGGGTCGATGGTGCGCTGCTTGCTGTTTGCGAAGACATATGTGACCAACGGTGAGGCATCAG------------------------------------------------------------------------------------------------------G-------TTCC-----------ATCTCC-----AGT---------------------------------CCATCATGCTAATCC------------------------------C----------------------TTCCCTCTTTTCAGTCAACATAACATCACCCACCTTGTGGTCGGCCACCAACTCGAGCACCGTC
droBip1	scf7180000396728:437240-437394 -		GGGGTCGATGGTGCGCTGCTTGCTGTTCGCGAAAACCTACGTGACGAACGGTGAGGTTGCAG------------------------------------------------------------------------------------------------------A-------TTCC-----------ACATCCTGCTGAGT------------------------------------CCATACTAA---------------------------------C----------------------CTCTGTCCTTCCAGTCAACATAACATCACCCACCCTGTGGTCGGCCACGAACTCGAGCACCGTC
droKik1	scf7180000302807:17819-18078 +		GGGATCGATGGTGCGGTGTTTGTTATTCGCGAAAACATATGTTACAAACGGTGAGTGTTAATTT-------AT---------ACTATCG----ATTTTAATAGG--------------------------------CACCCAACCGTCAATTAATGTAAATCTAGGTGCAA---CT-----------T--G----------------------------------TT----AATTGCATTCATTGAGTCCTAGAGATTTATGATGTAAATAATACTTTGTTTTAATAAAATGTTATATATACTTCATCTATTGCAGTCAACATAACGTCGCCTACTTTGTGGTCAGCAACAAATTCCAGTACAGTC
droFic1	scf7180000453904:1532546-1532780 +		AGGATCAATGGTGCGATGTTTACTGTTTGCCAAAACTTATGTTACTAATGGTGAGATCATTTTTAATATTATTACATGGTTTATTGCAACCTTTTGATGTCGGGATATTATATCGAAAACATAAAAAAATGTTTGGC-----------------------------------ACATTTGTAAAATTATTA-TCTGTTAAAAA------ATACA-----------------------------------------------------------------------------------------TTTTGAATTTTCAGTCAACATAACATCCCCAACTTTATGGTCAGCCACAAATGCCAGTACCGTC
droEle1	scf7180000490770:25978-26048 +		--------------------TATTATTTTCTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCAGTCAACATAACATCGCCAACTTTATGGTCTGCAACAAATGCTAGTACCGTG
droRho1	scf7180000779252:4870-4960 -		GGGATCGATGGTGCGGTGCTTACTATTTGCCAAGACTTATGTTACTAACGGTGAGTTTTTTTTT-------AT---------------------------------------------------------------------------------------------------A-----------------T----------------------------------AT----GGTTATTTGTATCAACTC----------------------------------------------------------------------------------------------------------TT--------A
droBia1	scf7180000301455:18630-18706 -		AGGATCTATGGTGCGATGTTTACTGTTTGCCAAAACCTATGTAACTAACGGTGAGCTCATTTTT-------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAA---GTATT
droTak1	scf7180000413017:556037-556230 +		GGGATCAATGGTGCGATGTTTACTATTTGCTAAAACTTATGTTACTAATGGTGAGTTACTTTTT-------T--------------------------ATCAAG--------------------------------ACCCCAA-GACTAATCGCT-TTAATCAAGTTACAGTT-----------------T----------------------------------TT----AATTGTTTTTACTAATTT-T--------------------------CT-----------------------TATTGTATTTTCAGTCAACATAACATCGCCCACTTTATGGTCAGCAACAAATGCCAGTACTGTC
droEug1	scf7180000409154:12442-12510 -		AGGGTCGATGGTGCGATGTTTACTATTTGCTAAAACTTATGTAACTAATGGTGAGTGTATTTTAAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2L:13498-13569 -		AGGATCCATGGTGCGATGTTTACTATTTGCCAAAACTTATGTTACTAATGGTAATCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------TTTTGTACTGTT
droSim2	2l:7067-7171 -		TAT--------------------TTTTTGTTGTTGTGTATACATCTAATTTGTTGTATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------TTTTACATTTTCAGTCAACATAACGTCGCCAACCTTATGGTCAGCAACAAATGCCAGTACCGTC
droSec2	scaffold_14:21519-21602 -		GGGATCCATGGTGCGATGTTTACTATTTGCCAAAACTTATGTTACTAATGGTAATCAACATGTT-------AT---------ATTGCTA----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTT--------------------TTGGA
droYak3	2L:10378-10434 -		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAGTGAACATAACGTCGCCAACTTTGTGGTCAGCAACAAATGCCAGTACCGTT
droEre2	scaffold_4929:42218-42273 -		GGGATCCATGGTTCGATGTTTGCTATTTGCCAAAACCTATGTTACTAACGGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GGGTTCTATGGTGCGATGCTTGCTCTTTGCTAAAACTTATATAACCAACGGTGTGTATAATAAT-------AT---------------------------------------------------------------------------------------------------T-----------------T----------------------------------TT----GAATGTTTTGAACGAGTCTT--------------------------ATC----------------------ATTTCCTTTTACAGTTAATATAACCTCCCCCACATTGTGGTCTGCAACGAACGCCAGCACCGTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................GTCTGCAACGAACGCCAGCAC....	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GCGATGCTTGCTCTTTGCTAA.............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CTGCAACGAACGCCAGCA.....	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GTCTGCAACGAACGCCAGCACC...	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TAAAACTTATATAACCAACGT...........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGGGTCTATGGTGCGTTGCCTACTCTTCGCTAAAACCTATATAACGAATGGTATGTATGGTAGAAA----------------------------------------------------------------------------------------------------------T-----------------G----------------------------------TC----GGATATCAGGAATAA-----------------------------TTTTT----------------------TTTTTTTTTTTCAGTTAATATAACATCTCCAACTTTGTGGTCTGCCACAAACGCCAGCACTGTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................................................TAATATAACATCTCCAACTTTGT..........................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GTTAATATAACATCTCCAACTTTGT..........................	25	1	1.00	1	1	0	0	0	0	0
........................CTTCGCTAAAACCTATATAA..................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GTTAATATAACATCTCCAACTTT............................	23	1	1.00	1	1	0	0	0	0	0
.......................TCTTCGCTAAAACCTATATAACGAAT.............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................GGTCTGCCACAAACGCCAGCACC...	23	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................GAATAA-----------------------------TTTTT----------------------TTTTTTTT........................................................	19	20	0.05	1	0	0	0	0	1	0

droGri2

GGGGTCTATGGTGCGTTGCTTAGTCTTTGCTAAAACCTATGTAACCAATGGTGTGTATAATGAC-------A------------------------------------------------------------------------------------------------------CT-----------CTCTTA-----AGT-----------------------------------CTTTGATTTAGTCCT--------------------------ATT----------------------TATTTGCATTGCAGTTAATATTACTTCACCCACTTTATGGTCGGCTACAAACGCGAGCACCGTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................................................................................................................................................................................TATGGTCGGCTACAAACGCGAGCACC...	26	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................................................TCGGCTACAAACGCGAGCACC...	21	1	1.00	1	1	0

droWil2

GGGTTCCATGGTGCGATGTCTGCTCTTTGCCAAGACCTACATAACGAACGGTAATCATTGGATT-------T------------------------------------------------------------------------------------------------------CC-----------CTCTTT-----TTTGTTCCTTTTGGACTACTACATTATTCAAT----------------------------------------------------------------------------TGTCTTTCAGTCAATATAACATCGCCGACTCTGTGGTCAGCTACGAATTCGAGCACTGTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................................................................................................................................................................................................AATATAACATCGCCGACTCTGT..........................	22	1	3.00	3	2	1	0	0	0
...................CTGCTCTTTGCCAAGACCT........................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................GTCAATATAACATCGCCGACT..............................	21	1	1.00	1	1	0	0	0	0
.................GTCTGCTCTTTGCCAAGACCTAC......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
............................GCCAAGACCTACATAACGAACGT...........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................AATATAACATCGCCGACT..............................	18	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CGCCGACTCTGTGGTCAGCTACGA..............	24	1	1.00	1	0	1	0	0	0
............................GCCAAGACCTACATAACGAACGTC..........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.......ATGGTGCGATGTCTGCTCTTTGC................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................GTCAATATAACATCGCCGA................................	19	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATAACATCGCCGACTCTGTGGT.......................	22	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................CAATATAACATCGCCGACTCTGT..........................	23	1	1.00	1	0	1	0	0	0

dp5

GGGATCCATGGTGCGATGCCTACTGTTCGCTAAAACTTATGTCACCAACGGTAAGTATTCCTAATAAAT--GC---------------------------------------------------------------------------------------------------ATAT----------------------AACA------ATACATTTCGACATTAATTAATTGAA---------------------------------------------------------------------TATTTATTTTCAGTCAACATAACATCGCCGACTTTGTGGTCAGCTACAAACGCTAGTACCGTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................CTACTGTTCGCTAAAACTT........................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	1	0	0	1	0	0	0	0	0
.......ATGGTGCGATGCCTACTGTT...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TAACATCGCCGACTTTGTGGT.......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TAACATCGCCGACTTTGTGGTCAGC...................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................GCTAAAACTTATGTCACCAACGTC..........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AACATAACATCGCCGACTTTGTGGTC......................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CAGCTACAAACGCTAGTACCGT.	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CATCGCCGACTTTGTGGTC......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................CGCTAAAACTTATGTCACCAAC.............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................ACATAACATCGCCGACTTTGTGGT.......................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CATCGCCGACTTTGTGGTCAGCTACAAAC............	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGGATCCATGGTGCGATGCCTACTGTTCGCTAAAACTTATGTCACCAACGGTAAGTATTCCTAATAAAT--GC---------------------------------------------------------------------------------------------------ATAT----------------------AACA------ATACATTTCGACATTAATTAATTGAA---------------------------------------------------------------------TATTTATTTTCAGTCAACATAACATCGCCGACTTTGTGGTCAGCTACAAACGCTAGTACCGTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................................................................................................................................................AACATAACATCGCCGACTTTGT..........................	22	1	3.00	3	3	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAACATAACATCGCCGACTTTGT..........................	23	1	1.00	1	1	0	0	0	0	0
..GATCCATGGTGCGATGCCTACTGTTCG.................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAACATAACATCGCCGACTTT............................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ATCGCCGACTTTGTGGTCAG....................	20	1	1.00	1	0	1	0	0	0	0

droAna3

GGGGTCGATGGTGCGCTGCTTGCTGTTTGCGAAGACATATGTGACCAACGGTGAGGCATCAG------------------------------------------------------------------------------------------------------G-------TTCC-----------ATCTCC-----AGT---------------------------------CCATCATGCTAATCC------------------------------C----------------------TTCCCTCTTTTCAGTCAACATAACATCACCCACCTTGTGGTCGGCCACCAACTCGAGCACCGTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................GCTGTTTGCGAAGACATATGT....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..............GCTGCTTGCTGTTTGCGAAGA...........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................AACATCACCCACCTTGTGGTCGGCCAC................	27	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................GGTCGGCCACCAACTCGAGCAC....	22	1	1.00	1	0	1	0	0	0	0

droBip1

GGGGTCGATGGTGCGCTGCTTGCTGTTCGCGAAAACCTACGTGACGAACGGTGAGGTTGCAG------------------------------------------------------------------------------------------------------A-------TTCC-----------ACATCCTGCTGAGT------------------------------------CCATACTAA---------------------------------C----------------------CTCTGTCCTTCCAGTCAACATAACATCACCCACCCTGTGGTCGGCCACGAACTCGAGCACCGTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGGATCGATGGTGCGGTGTTTGTTATTCGCGAAAACATATGTTACAAACGGTGAGTGTTAATTT-------AT---------ACTATCG----ATTTTAATAGG--------------------------------CACCCAACCGTCAATTAATGTAAATCTAGGTGCAA---CT-----------T--G----------------------------------TT----AATTGCATTCATTGAGTCCTAGAGATTTATGATGTAAATAATACTTTGTTTTAATAAAATGTTATATATACTTCATCTATTGCAGTCAACATAACGTCGCCTACTTTGTGGTCAGCAACAAATTCCAGTACAGTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGGATCAATGGTGCGATGTTTACTGTTTGCCAAAACTTATGTTACTAATGGTGAGATCATTTTTAATATTATTACATGGTTTATTGCAACCTTTTGATGTCGGGATATTATATCGAAAACATAAAAAAATGTTTGGC-----------------------------------ACATTTGTAAAATTATTA-TCTGTTAAAAA------ATACA-----------------------------------------------------------------------------------------TTTTGAATTTTCAGTCAACATAACATCCCCAACTTTATGGTCAGCCACAAATGCCAGTACCGTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

--------------------TATTATTTTCTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTCAGTCAACATAACATCGCCAACTTTATGGTCTGCAACAAATGCTAGTACCGTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGGATCGATGGTGCGGTGCTTACTATTTGCCAAGACTTATGTTACTAACGGTGAGTTTTTTTTT-------AT---------------------------------------------------------------------------------------------------A-----------------T----------------------------------AT----GGTTATTTGTATCAACTC----------------------------------------------------------------------------------------------------------TT--------A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGGATCTATGGTGCGATGTTTACTGTTTGCCAAAACCTATGTAACTAACGGTGAGCTCATTTTT-------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAA---GTATT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGGATCAATGGTGCGATGTTTACTATTTGCTAAAACTTATGTTACTAATGGTGAGTTACTTTTT-------T--------------------------ATCAAG--------------------------------ACCCCAA-GACTAATCGCT-TTAATCAAGTTACAGTT-----------------T----------------------------------TT----AATTGTTTTTACTAATTT-T--------------------------CT-----------------------TATTGTATTTTCAGTCAACATAACATCGCCCACTTTATGGTCAGCAACAAATGCCAGTACTGTC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGGGTCGATGGTGCGATGTTTACTATTTGCTAAAACTTATGTAACTAATGGTGAGTGTATTTTAAATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

AGGATCCATGGTGCGATGTTTACTATTTGCCAAAACTTATGTTACTAATGGTAATCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA--------------------------------TTTTGTACTGTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...ATCCATGGTGCGATGTTTACT......................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTTGCCAAAACTTATGTTACTAATGT...........................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....CCATGGTGCGATGTTTACT......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATCCATGGTGCGATGTTTACTATTTGC................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GTTTACTATTTGCCAAAACTTAT......................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTTGCCAAAACTTATGTTACTAATGTC..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................ACTATTTGCCAAAACTTAT......................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AAAACTTATGTTACTAATG............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GATGTTTACTATTTGCCAAAA...........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TAT--------------------TTTTTGTTGTTGTGTATACATCTAATTTGTTGTATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------TTTTACATTTTCAGTCAACATAACGTCGCCAACCTTATGGTCAGCAACAAATGCCAGTACCGTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGCCAACCT.............................	25	1	91.00	91	0	0	22	22	2	1	0	0	0	0	38	2	4	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGCCAACCTTA...........................	27	1	81.00	81	0	0	13	24	0	0	0	0	0	1	42	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTC.....................................	17	1	54.00	54	0	0	0	0	0	0	0	0	0	0	54	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGCCAACCTT............................	26	1	49.00	49	0	0	0	10	2	0	0	0	0	0	35	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGCCAACC..............................	24	1	33.00	33	0	0	4	11	1	1	0	0	0	0	15	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGCCAAC...............................	23	1	27.00	27	0	0	16	2	0	0	0	0	0	0	8	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TGGTCAGCAACAAATGCCAGTACCGTC	27	1	25.00	25	0	0	0	2	0	0	0	0	0	0	23	0	0	0	0	0	0
...........................TGTTGTTGTGTATACATCTAATT............................................................................................................................................................................................................................................................................................................................	23	1	17.00	17	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0
...........................TGTTGTTGTGTATACATCTAATTTGT.........................................................................................................................................................................................................................................................................................................................	26	1	17.00	17	0	0	0	1	0	0	0	0	0	0	16	0	0	0	0	0	0
..........................TTGTTGTTGTGTATACATCTAATTTGT.........................................................................................................................................................................................................................................................................................................................	27	1	15.00	15	0	0	0	1	0	0	0	0	0	0	13	1	0	0	0	0	0
........................TTTTGTTGTTGTGTATACATCTAA..............................................................................................................................................................................................................................................................................................................................	24	1	13.00	13	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGC...................................	19	1	13.00	13	0	0	0	0	1	0	0	0	0	0	12	0	0	0	0	0	0
.......................TTTTTGTTGTTGTGTATACATCTAA..............................................................................................................................................................................................................................................................................................................................	25	1	12.00	12	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TAACGTCGCCAACCTTATGGTCAGC...................	25	1	12.00	12	0	0	6	2	0	0	1	0	0	0	3	0	0	0	0	0	0
...........................TGTTGTTGTGTATACATCTAATTTG..........................................................................................................................................................................................................................................................................................................................	25	1	12.00	12	0	0	0	1	1	0	0	0	0	0	10	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGCC..................................	20	1	11.00	11	0	0	0	0	0	1	0	0	0	0	10	0	0	0	0	0	0
TAT--------------------TTTTTGTTGTTGTGTATACATC.................................................................................................................................................................................................................................................................................................................................	25	1	11.00	11	0	0	2	1	0	0	0	0	0	0	7	0	1	0	0	0	0
..........................TTGTTGTTGTGTATACATCTAATT............................................................................................................................................................................................................................................................................................................................	24	1	10.00	10	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TATGGTCAGCAACAAAT............	17	1	9.00	9	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0
.........................TTTGTTGTTGTGTATACATCTAATT............................................................................................................................................................................................................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TGGTCAGCAACAAATGCCAGTACCGT.	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
..........................TTGTTGTTGTGTATACATCTAATTTG..........................................................................................................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
.........................TTTGTTGTTGTGTATACATCTAA..............................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
..........................TTGTTGTTGTGTATACATCTA...............................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TATGGTCAGCAACAAATGCCAGTACCGT.	28	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ATGGTCAGCAACAAATGCCAGTACCGTC	28	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
..........................TTGTTGTTGTGTATACATC.................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
........................TTTTGTTGTTGTGTATACATCTAATT............................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
..........................TTGTTGTTGTGTATACA...................................................................................................................................................................................................................................................................................................................................	17	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TAACGTCGCCAACCTTATGGTCAGCAA.................	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	5	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCG....................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...........................TGTTGTTGTGTATACATC.................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAACAAATGCCAGTACCGTC	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGT......................................	16	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AGTCAACATAACGTCGCCAACCTTA...........................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...........................TGTTGTTGTGTATACATCTA...............................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AACATAACGTCGCCAACCTTA...........................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CAGTCAACATAACGTCGCCAACCTTA...........................	26	1	4.00	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
..T--------------------TTTTTGTTGTTGTGTATACATCTAA..............................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TAACGTCGCCAACCTTATGGTCAGCA..................	26	1	4.00	4	0	0	0	1	0	0	0	0	0	0	2	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATAACGTCGCCAACCTTA...........................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AGTCAACATAACGTCGCCAACCTT............................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AGTCAACATAACGTCGCCAACCT.............................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...........................TGTTGTTGTGTATACATCTAA..............................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TGGTCAGCAACAAATGCCAGT......	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TCAGCAACAAATGCCAGTACCGTC	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGCCAA................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0
.........................TTTGTTGTTGTGTATACA...................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................TTTTTGTTGTTGTGTATACATCTAAT.............................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TGGTCAGCAACAAATGCCAGTACCG..	25	1	3.00	3	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGCCA.................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TATGGTCAGCAACAAATGCCAGT......	23	1	3.00	3	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0
..........................TTGTTGTTGTGTATACATCTAAT.............................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
............................GTTGTTGTGTATACATCTAATT............................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................GTTGTGTATACATCTAATT............................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................TTTTTGTTGTTGTGTATACATCTAATT............................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ATGGTCAGCAACAAATGCCAGTACCGT.	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................GTTGTGTATACATCTAA..............................................................................................................................................................................................................................................................................................................................	17	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...........................TGTTGTTGTGTATACA...................................................................................................................................................................................................................................................................................................................................	16	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.....................................................TGTATAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------TTTTACATTTTCAGTCAAC.............................................	27	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTGTTGTTGTGTATACATCTAA..............................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACG.......................................	15	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............................TGTTGTGTATACATCTAATTTGTTGTA.....................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACAAATGCCAGTACCGTC	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TTCAGTCAACATAACGTCGCCAACC..............................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TACATTTTCAGTCAACATAACGTCGC...................................	26	1	3.00	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TTCAGTCAACATAACGTC.....................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TGGTCAGCAACAAAT............	15	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............................TGTTGTGTATACATCTAATTTGT.........................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TGGTCAGCAACAAATGCCAGTACC...	24	1	3.00	3	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AGTCAACATAACGTCGCCAAC...............................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................TTTGTTGTTGTGTATACATCTA...............................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AACATAACGTCGCCAACCTTATGGTC......................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TTCAGTCAACATAACGTCGCCAACCT.............................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CAGTCAACATAACGTCGCCAACCT.............................	24	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AAATGCCAGTACCGTC	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TACATTTTCAGTCAACATAACGTCGCC..................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTTGTTGTTGTGTATACATCTAATTTG..........................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................TTTCAGTCAACATAACGTCGCCAACCT.............................	27	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TAACGTCGCCAACCTT............................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAACATAACGTCGCCAACCTT............................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TTTACATTTTCAGTCAACATAACGTCGC...................................	28	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTTGTTGTTGTGTATACATCT................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TATGGTCAGCAACAAA.............	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGCCAACCTTAT..........................	28	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................TTGTTGTGTATACATC.................................................................................................................................................................................................................................................................................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ACGTCGCCAACCTTA...........................	15	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................TTTTGTTGTTGTGTATACATCTAAT.............................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................TTGTTGTTGTGTATACAT..................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATAACGTCGCCAACCT.............................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..........................TTGTTGTTGTGTATAC....................................................................................................................................................................................................................................................................................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATAACGTCGCCAACCTT............................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................ACATAACGTCGCCAACCTT............................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AGCAACAAATGCCAGTACCGTC	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TATGGTCAGCAACAAATGCCAGTACC...	26	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................TTTGTTGTTGTGTATACATCTAATTTGT.........................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................ATACATCTAATTTGTT........................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................TAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------TTTTACATTTTCAGTCAACATA..........................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CAACCTTATGGTCAGCAAC................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TAACGTCGCCAACCTTATGGTC......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TTATGGTCAGCAACAAATGCCAG.......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AACATAACGTCGCCAACCTTATGGT.......................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AACGTCGCCAACCTTATGGTC......................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................TTGTTGTGTATACATCTAATTTGTTGTA.....................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TGGTCAGCAACAAATGCC.........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATAACGTCGCCAACCTTATGGTCAGC...................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TGGTCAGCAACAAATGC..........	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................TGTGTATACATCTAATTTGTTGTATA...................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AGCAACAAATGCCAGTACCGT.	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................GTATACATCTAATTTGT.........................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................TCAGCAACAAATGCCAGTACCG..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
TAT--------------------TTTTTGTTGTTGTGTATA.....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................TGTTGTGTATACATCTAATTTGTT........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................TGTTGTGTATACATCTAATTTG..........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................TTGTTGTGTATACATCTAATTTG..........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CATAACGTCGCCAACCT.............................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TATGGTCAGCAACAAATGCCT........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TATGGTCAGCAACAAATGCC.........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TTCAGTCAACATAACGTCGCCAACCTTA...........................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................TTGTTGTTGTGTATACATCTAATTTGTTG.......................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................TGTTGTTGTGTATACATCTAATTTGTTG.......................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................TGTTGTGTATACATCTAA..............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................TGTTGTGTATACATCTA...............................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................TGTTGTGTATACATCTAATTTGTTGT......................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................TTTTTGTTGTTGTGTATACAT..................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AACCTTATGGTCAGCAACAAATGCCAG.......	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AACATAACGTCGCCAACCTTATG.........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................TGTTGTTGTGTATACAT..................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................TGTTGTTGTGTATACATCTAATTT...........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................GCAACAAATGCCAGTACCGT.	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AACGTCGCCAACCTTA...........................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CATTTTCAGTCAACATAACGTCGCCA.................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CAGTCAACATAACGTCGC...................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................TATGGTCAGCAACAAATG...........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................AATGCCAGTACCGTC	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................TGTATACATCTAATTTGT.........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................TTGTTGTGTATACATCTAATTTGT.........................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AACCTTATGGTCAGCA..................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................TTGTTGTTGTGTATACATCTAATTTT..........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................TTTTGTTGTTGTGTATACATC.................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGCCAACCTTT...........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................T----------------------TTTTACATTTTCAGTCAACATAACGT......................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ATGGTCAGCAACAAAT............	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AACATAACGTCGCCAACCTTATGG........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACAAATGCCAGTACCGT.	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................GTTGTGTATACATCTAATTTGT.........................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................TAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------TTTTACATTTTCAGTCAACA............................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................ACAAATGCCAGTACCGTC	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CATAACGTCGCCAACCTTATGGTCAGC...................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGCCAAAA..............................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................ATGGTCAGCAACAAATGCCAGTACC...	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TTTTCAGTCAACATAACGTCGCCAC................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................ACATAACGTCGCCAACCT.............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................TTGTTGTGTATACATCT................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CAGCAACAAATGCCAGTACCGTC	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TCAACATAACGTCGCCAACCT.............................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TTGTTGTTGTGTATACATCT................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CATAACGTCGCCAACC..............................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................TGTTGTTGTGTATACATCTAAT.............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATAACGTCGCCAACCTTATGG........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CGCCAACCTTATGGTCAGC...................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TAACGTCGCCAACCTTA...........................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................AACATAACGTCGCCAACCTTATGGTCAGC...................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..T--------------------TTTTTGTTGTTGTGTATACAT..................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCGCCAACCTTATGGTCAGCAAC................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ACGTCGCCAACCTTATGGTCAGCAAC................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................GTTGTGTATACATCTAATTTG..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................TTTTTGTTGTTGTGTATACA...................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TAACGTCGCCAACCTTATGG........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................ACAAATGCCAGTACCG..	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................CAACATAACGTCGCCAACCTTATGGTC......................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGA...................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTT.....................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................TTTGTTGTTGTGTATA.....................................................................................................................................................................................................................................................................................................................................	16	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................TGTTGTGTATACATCT................................................................................................................................................................................................................................................................................................................................	16	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................TTTTTGTTGTTGTGTATA.....................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGA......................................	16	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TCAGTCAACATAACGTCGGGT.................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................TTTTGTTGTTGTGTATA.....................................................................................................................................................................................................................................................................................................................................	17	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................TTGTTGTTGTGTATA.....................................................................................................................................................................................................................................................................................................................................	15	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................TTTTGTTGTTGTGTATC.....................................................................................................................................................................................................................................................................................................................................	17	13	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GGGATCCATGGTGCGATGTTTACTATTTGCCAAAACTTATGTTACTAATGGTAATCAACATGTT-------AT---------ATTGCTA----T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTT--------------------TTGGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAGTGAACATAACGTCGCCAACTTTGTGGTCAGCAACAAATGCCAGTACCGTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................................................................CATAACGTCGCCAACTTTGTGGT.......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATAACGTCGCCAACTTTGT..........................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATAACGTCGCCAACTTTGG..........................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GAACATAACGTCGCCAACTTTGTGGT.......................	26	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CGCCAACTTTGTGGTCAGC...................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATAACGTCGCCAACTTTGTGGT.......................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TAACGTCGCCAACTTTGG..........................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CGTCGCCAACTTTGTGGTCA.....................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ATAACGTCGCCAACTTTGTGGTCAGCA..................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................AACTTTGTGGTCAGCAACA...............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GGGATCCATGGTTCGATGTTTGCTATTTGCCAAAACCTATGTTACTAACGGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........GTTCGATGTTTGCTATTTGC................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0

dvi_22233

scaffold_13246:74657-74713 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads