ID:

dvi_22210

 Coordinate:

scaffold_4721:5064-5214 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_7916:3]; CDS [Dvir\GJ22536-cds]; intron [Dvir\GJ22536-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGAACGGGGAGCAGCTATTCTGCTTGGCTCTTGATGCTGTCGAAGACTATGTATATTTTATAGGATGAGAGTTTTTTACGTTTGCCTGTTACGTACACTTGCACATTATACGGGTTCAGGGTCAAAATAAAAACAGAAGATTGCACTAGTTTGATTATAATCGTATATATATTTAATAATCGTTCATATGTTATTTCTAGGCATATTCTTTCAGGAAGGAATACTCTGGAAAGAACAGCGACGCTTTATC
**************************************************(((((.....(((((.((((.((.....)).)))))))))...))))).........(((((((......(((((((.......((......))......)))))))....))))))).......(((((.(((....)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 V053
head
 M028
head
 V047
embryo
 SRR060660
Argentina_ovaries_total
 SRR060666
160_males_carcasses_total
 M027
male body		 SRR060659
Argentina_testes_total
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060658
140_ovaries_total
...........................................................................................................................................................................................................................GAATGCTCTGGAAAGTGCAGC........... 21 3 5 2.00 10 5 0 2 0 3 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTGGAAAGAACAGCGACGCT..... 20 0 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...AACGGGGAGCAGCTATTCTGC................................................................................................................................................................................................................................... 21 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGGAATACTCTGGAAAGAACAGC........... 23 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................GGAAAGAACAGCGACGCTTTATC 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......GGGGAGCGGCTATTCTGCTTGGC.............................................................................................................................................................................................................................. 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TGATGCTGTCGAGGACTATGT...................................................................................................................................................................................................... 21 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGAATACTCTGGACAGAACA............. 20 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGGAATACTCTGGAAAGAAC.............. 20 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..GAACGGGGAGCGGCTATTCTGC................................................................................................................................................................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ATACTCTGGAAAGAACAG............ 18 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................TTGATGCTGTCGAAGACTATG....................................................................................................................................................................................................... 21 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AGGAAGGAATACTCTGGAAAGA................ 22 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CTCTGGAAAGAACAGCGACGC...... 21 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................AATACTCTGGAAAGAACAGC........... 20 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...AACGGGGAGCAGCTATTCTGCT.................................................................................................................................................................................................................................. 22 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTTTCAGGAAGGAATACTCTGGA.................... 23 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CAGGAAGGAATACTCTGGA.................... 19 0 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................ATGCTCTGGAAAGAGCAGC........... 19 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TACTCCGTAAAGAATAGCGA......... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................GAATGTTCTGGAAAGAAC.............. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................AAGAATGTTCTGGAAAGAAC.............. 20 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACTCCGTAAAGAATAGCGA......... 19 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTGCGAGGCATATTCTTTC...................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................ATGTTGTCGAAGACTTTGAA..................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TACTTGCCCCTCGTCGATAAGACGAACCGAGAACTACGACAGCTTCTGATACATATAAAATATCCTACTCTCAAAAAATGCAAACGGACAATGCATGTGAACGTGTAATATGCCCAAGTCCCAGTTTTATTTTTGTCTTCTAACGTGATCAAACTAATATTAGCATATATATAAATTATTAGCAAGTATACAATAAAGATCCGTATAAGAAAGTCCTTCCTTATGAGACCTTTCTTGTCGCTGCGAAATAG
**************************************************(((((.....(((((.((((.((.....)).)))))))))...))))).........(((((((......(((((((.......((......))......)))))))....))))))).......(((((.(((....)))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060659
Argentina_testes_total
 SRR060681
Argx9_testes_total
 SRR060666
160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 V047
embryo
 SRR060685
9xArg_0-2h_embryos_total
...........CGTCGATAAGACGAACCGAGA........................................................................................................................................................................................................................... 21 0 3 0.67 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAAGATCCGTATAAGAAAGTCCTTCCT.............................. 27 0 3 0.33 1 0 0 1 0 0 0 0 0 0
............GTCGATAAGACGAACCGAGAA.......................................................................................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.........CTCGTCGATAAGGCGAACCGA............................................................................................................................................................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................................................GTACTAGGCACAAGTCCCAG............................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0
...........CGTCGGTGAGACGAACCGAGA........................................................................................................................................................................................................................... 21 2 4 0.25 1 0 1 0 0 0 0 0 0 0
......................................................................................................................TCCCAGTTTTATTGTTGTGT................................................................................................................. 20 2 4 0.25 1 0 0 0 1 0 0 0 0 0
.............................................................................AGGCAAACGGACATTGCATC.......................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 0 1 0 0 0
.............................................................................AGGCAAACGGACATTGCA............................................................................................................................................................ 18 2 11 0.09 1 0 0 0 0 1 0 0 0 0
.................TCAGTCGAACCTAGAACTAC...................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 1 0 0
........................................................................AAAAAAGGCAAACTGACAA................................................................................................................................................................ 19 2 16 0.06 1 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................AAAATTATTAGCAGGTAT.............................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1
....................................................................................................................................TTGTCTTCTACCGTCATAA.................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_4721:5014-5264 + dvi_22210 ATGAA--------CGGGGAGCAGCTAT-TCTGCTTGGCTCTTGATGCTGTCGAAGACTATGTATATTTTATAGGATGAGAGTTTTTTAC----------GTTTGCCTGTTACGTACACTTGCAC--------------------ATT------ATACGGGTTCAGGGTC--------AA--------AATAAAAAC--AGAAGATTGC----------------------A------------------------------------------------------------------------------CTAGTTTGATTATAATCGTATATATATTTAATAATCGTTCATATGTTATTTCTAG--GCATATTCTTTCAGGAAGGAATACTCTGGAAAGAACAGCGACGC----TTTATC
droMoj3 scaffold_6500:22186993-22187230 + ACAGA--------CGGACAG-GGCTATATCGACTCAGCTCGTCGTCCTGATCAAGAATATATATACTTTATGGGGTCTGCGATGATTCC----------TTCTGCCTGTTACATACTTTTC-ACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCAGGGTA--------TA--------AT-AAATAT--ATAAAATTGT----------------------ACA--------T---------------------------------------------------------------------ACATAAAATTTAATTGTTTATTTATTTATTTATT-TTATTATCTGGTTTGAAC--A-----------------------------------AACATTTT----TTCA--
droGri2 scaffold_8789:3494-3731 - ACGGA--------CGGATAT-GGCTATATCGACTCAGCTGTTGACCCTGATCAAGAATATAGATACTTTATGGGGTCGGAGATGCTTTC----------TTCTGTCTGTTACATACATTTGCACAAAACCATTATACACTTTTTACTCATTTTTAATGGGCTTAGGGTA--------TA--------AT-AAT--------------------------------------------------------ATAGTTGAAGTAATCGTTTTTAATTATATATTTTCTTTATATTTATATTTATTTATATAT-----------------------------------------------GTTTGTAC--T-----------------------------------TATATTTA----TTTA--
droWil2 scf2_1100000004961:1998594-1998792 - ACGGACGGACAGACGGACAT-GGCTATATCCACTCGGCTGTTGATGCTGATTAAGAATATATACACTCTATGGGGTCAGAAATGCTGAC----------TTCTGCCTGTTACATACATTTTGGCG----------------------------------GTGTATGGTATAAT--------CAGGCAAA-----------------GC----------------------ATA--------ATGTCAAGGTCGTTGATA-------------------------------------TATAATTATATAT-----------------ATATATATAT-------------------------------------------------------------------ATAATTATCTAAATATT
dp5 2:11385949-11386000 - A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--GAATCTTCTTCCAGGAGGGTGCGCTCTGGAAGGAGCAGCGACGC----TTCATT
droPer2 scaffold_0:9127899-9127950 + A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--GAATCTTCTTCCAGGAGGGTGCGCTCTGGAAGGAGCAGCGACGC----TTCATT
droAna3 scaffold_13340:9385207-9385258 - A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--GTATTTTCTTTCAAGACGGGCCCCTTTGGAAGGAGCAGCGACGT----TTTATC
droBip1 scf7180000396574:5167-5275 - ACGAACGGA----CGGACAT-GGCTATATCCACTCGGCTGTTGATGCTGATCAAGATTATACATCCTTTATGGGGTCGGAGTTTATTCC----------TTATCTATGTTACATACATTCACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302778:559335-559415 - ATAAATATT-----TAATAT-TTATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACTTAG--GCATATTCTTCCAGGAAGGACCTTTGTGGAAGGAGCAGCGCCGC----TTTATC
droFic1 scf7180000453800:1249249-1249360 + TTTGATAAT---------------------------------AAATCTGTTGAT--------ATATTTTAATAGTTTT-------------------------------------------------TCCAAAATTTCCTT-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCTGAAG--GCATCTTCTTTCAGGACGGACCTTTGTGGAAGGAGCAGCGCCGC----TTTATC
droEle1 scf7180000490124:3207-3374 + TCG----------------------------ACTCGGCTATTGATCCTGATCAAGAATATATATATTTTATGGGGTCGGGAACTCTTCC----------TTCTACCTGTTACATACTCTTCCAC----------------------C------CTTCGAGTAACGGGTG--------AA--------AA-AAT-AGAAAAAAAAAGGG----------------------ATA--------TTTAA---------------------------------------------------------------AAAGCT--------------------TTTAACAATTG----------------------------------------TTCCTATG-----------GAAGC----TTTAAG
droRho1 scf7180000777214:225854-226088 + ACAGA--------CGGACAT-GGCTATATCGACTCGGCTAGTGACCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCC----------TTCTAGCTGTTACATACTTTTGCACGAATACAATATACCCTT-TTACT------CTACGAGTAACGGGTA--------TA--------AT-AAA--C--AAAAAATTGT----------------------TTAAGCTTAAATCAGATAAATAATTGATTAACTC-------------------------------------------------------------------------------------ATTTGTTAGTTAGAATCACATAT-----------TGACTTTTAAGAAAAAA--------------------
droBia1 scf7180000299102:1168138-1168224 - ATAAATACTTAGTTAAAT--------------------------------------------------------------------TTC----------TTTTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCCAG--GAATCTTCTTTCAGGACGGACCCCTGTGGAAGGAGCAGCGTCGC----TTTATC
droTak1 scf7180000415815:30287-30458 + TCG----------------------------ACTCGGCTAGTGATCCTGATCAAGAATATATATAGTTTATAGGGTCGGAAACGCTTCC----------TTTTACCTGTTACATACTTTTGCACGAATCTAATATACCCTT-TTACT------CTACGAGTAACGGGTA--------TA--------AT-AAA---------ATTTAC----------------------A------------------------------------------------------------------------------TAAATTTCATTACAGCCAAATACAT-----------------------------------------------------------------------------TTTAGTAAT
droEug1 scf7180000409802:1240609-1240834 - TGTGT--------TTAAT-------------------------------------------------TTTTAAAATAAAACTTTTC-ACAACGACGTGCACTAATTGCTTAAACACAGCTGAAC--------------------G--------------TTACAAAGCCTAATCATTAA--------AAAAAATATTAAATAGCTTCCGCCACCTTAAGTGATAAGCCCAAGTAGCCTAGACGGTTAATATTATTAATAAATTC-------------------------------------------------------------------------------------AAA---TTTCCGTAG--GTATTTTCTTTCAGGATGGACCCTTATGGAAGGAGCAGCGTCGC----TTCATC
dm3 chr3R:8790195-8790291 + TTGAT--------TGATATT-TAATATAACTATTTAATTTTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTCGCAG--GGATCTTTTTCCAGGATGGCCCCCTGTGGAAGGAGCAACGTCGC----TTCATC
droSim2 x:17349404-17349562 - ACGGA--------CAGAC---GGC-AGTTCGACTCGGCTATTGATCCTGATTAAGAATATATATACTTTATATGGTCGGAAACGCTTCC----------TTCTGCCTGTTACATACTTATCAAGGAATGTAGTATACCCTT-TCACT------CCACGAGTAACGGGTA--------TA--------ATTAAAAAA--AAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT
droSec2 scaffold_0:13205870-13205931 - TGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCGCAG--GCATCTTTTTCCAGGATGGCCCCCTGTGGAAGGAGCAGCGTCGG----TTCATC
droYak3 3R:13082692-13082788 + TTGAT--------TGC----------------------TATTTAATAT-------------------------TACT--AAATAATTTT----------TCTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTGCAG--GCATCTTTTTCCAGGATGGCCCCTTGTGGAAGGAGCAGCGTCGC----TTCATC
droEre2 scaffold_4820:5486872-5487075 + ACAGA--------CGGACAT-GACCATATCGACCCGGCTTTTGATCCTGATCAAGAATATATATACTTTATATGATCGGAAAAGCTTCC----------TTCTGCCTGTTACATACTTTTCAACGAA----------CCTT-TTACT------CTACGAGTACCGGGTA--------TAAATAGACTGT--AT-ACTAAAACAATTGT----------------------ATA--------TTGGTGAAATTATTGCTAAATTT-------------------------------------------------------------------------------------ATAAATTATTTATA------------------------------------------------------GAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATGAA--------CGGGGAGCAGCTAT-TCTGCTTGGCTCTTGATGCTGTCGAAGACTATGTATATTTTATAGGATGAGAGTTTTTTAC----------GTTTGCCTGTTACGTACACTTGCAC--------------------ATT------ATACGGGTTCAGGGTC--------AA--------AATAAAAAC--AGAAGATTGC----------------------A------------------------------------------------------------------------------CTAGTTTGATTATAATCGTATATATATTTAATAATCGTTCATATGTTATTTCTAG--GCATATTCTTTCAGGAAGGAATACTCTGGAAAGAACAGCGACGC----TTTATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................CTGGAAAGAACAGCGACGC----T.....2030.672020000000000000000000000000000000000000000000000000000000000000
...AA--------CGGGGAGCAGCTAT-TCTGC...................................................................................................................................................................................................................................................................................................................................................................................................2130.331000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................AGGAATACTCTGGAAAGAACAGC...............2330.331000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAACAGCGACGC----TTTATC2330.331001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AGGAATACTCTGGAAAGAAC..................2030.331000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTGGAAAGAACAG................1830.331010000000000000000000000000000000000000000000000000000000000000
........................................TTGATGCTGTCGAAGACTATG.......................................................................................................................................................................................................................................................................................................................................................................2130.331000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................AGGAAGGAATACTCTGGAAAGA....................2230.331000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGAAAGAACAGCGACGC----......2130.331100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AATACTCTGGAAAGAACAGC...............2030.331000000000000000000000000000000000010000000000000000000000000000
...AA--------CGGGGAGCAGCTAT-TCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................2230.331000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................................................................................................................CTTTCAGGAAGGAATACTCTGGA........................2330.331000000000010000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CAGGAAGGAATACTCTGGA........................1930.331000000000100000000000000000000000000000000000000000000000000000
droMoj3
ACAGA--------CGGACAG-GGCTATATCGACTCAGCTCGTCGTCCTGATCAAGAATATATATACTTTATGGGGTCTGCGATGATTCC----------TTCTGCCTGTTACATACTTTTC-ACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCAGGGTA--------TA--------AT-AAATAT--ATAAAATTGT----------------------ACA--------T---------------------------------------------------------------------ACATAAAATTTAATTGTTTATTTATTTATTTATT-TTATTATCTGGTTTGAAC--A-----------------------------------AACATTTT----TTCA--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....A--------CGGACAG-GGCTATATCGACTCAGC..............................................................................................................................................................................................................................................................................................................................................................................................25200.306000060
.......................CTATATCGACTCAGCTCGTCG........................................................................................................................................................................................................................................................................................................................................................................................21200.255500000
......................................................................................................................TTC-ACAAAACCATTATACCC.........................................................................................................................................................................................................................................................................................20200.153000030
...........................................................................TCTGCGATGATTCC----------TTCTGCCTGTT......................................................................................................................................................................................................................................................................................................................25200.153300000
...GA--------CGGACAG-GGCTATATCGACTCAG...............................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
..................................................................TTTATGGGGTCTGCGATGATT.............................................................................................................................................................................................................................................................................................................................................21200.102020000
.................................................................CTTTATGGGGTCTGCGATGATTCC----------.................................................................................................................................................................................................................................................................................................................................24200.051000010
....................................................................................................................................................ATTTTCAATGGGTTCAGGGTA--------T..................................................................................................................................................................................................................................................22200.051000001
...............................ACTCAGCTCGTCGTCCTGATC................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
..........................TATCGACTCAGCTCGTCGTCCC....................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
....A--------CGGACAG-GGCTATATCGACTCAGCT.............................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
.............................................................................................................TACATACTTTTC-ACAAAACCATTATAC...........................................................................................................................................................................................................................................................................................27200.051000010
......................GCTATATCGACTCAGCTCGTCGTCCT....................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
..................................................................TTTATGGGGTCTGCGATGAT..............................................................................................................................................................................................................................................................................................................................................20200.051010000
droGri2
ACGGA--------CGGATAT-GGCTATATCGACTCAGCTGTTGACCCTGATCAAGAATATAGATACTTTATGGGGTCGGAGATGCTTTC----------TTCTGTCTGTTACATACATTTGCACAAAACCATTATACACTTTTTACTCATTTTTAATGGGCTTAGGGTA--------TA--------AT-AAT--------------------------------------------------------ATAGTTGAAGTAATCGTTTTTAATTATATATTTTCTTTATATTTATATTTATTTATATAT-----------------------------------------------GTTTGTAC--T-----------------------------------TATATTTA----TTTA--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACGGACGGACAGACGGACAT-GGCTATATCCACTCGGCTGTTGATGCTGATTAAGAATATATACACTCTATGGGGTCAGAAATGCTGAC----------TTCTGCCTGTTACATACATTTTGGCG----------------------------------GTGTATGGTATAAT--------CAGGCAAA-----------------GC----------------------ATA--------ATGTCAAGGTCGTTGATA-------------------------------------TATAATTATATAT-----------------ATATATATAT-------------------------------------------------------------------ATAATTATCTAAATATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........ACAGACGGACAT-GGCTATATCC.....................................................................................................................................................................................................................................................................................................................................................................................................2230.33100001
...GACGGACAGACGGACAT-GGCTA..........................................................................................................................................................................................................................................................................................................................................................................................................22200.10200020
dp5
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--GAATCTTCTTCCAGGAGGGTGCGCTCTGGAAGGAGCAGCGACGC----TTCATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTTCCAGGAGGGTGCGCTCTGGA........................2811.0010000100000
................................................................................................................................................................................................................................................................................................................................................................................ATCTTCTTCCAGGAGGGTGCGCTCTGG.........................2711.0010010000000
droPer2
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--GAATCTTCTTCCAGGAGGGTGCGCTCTGGAAGGAGCAGCGACGC----TTCATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................AGGAGGGTGCGCTCTGGAAG......................2011.001100000
droAna3
A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--GTATTTTCTTTCAAGACGGGCCCCTTTGGAAGGAGCAGCGACGT----TTTATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACGAACGGA----CGGACAT-GGCTATATCCACTCGGCTGTTGATGCTGATCAAGATTATACATCCTTTATGGGGTCGGAGTTTATTCC----------TTATCTATGTTACATACATTCACAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATAAATATT-----TAATAT-TTATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCACTTAG--GCATATTCTTCCAGGAAGGACCTTTGTGGAAGGAGCAGCGCCGC----TTTATCSizeHit CountTotal NormTotal
No Reads
droFic1
TTTGATAAT---------------------------------AAATCTGTTGAT--------ATATTTTAATAGTTTT-------------------------------------------------TCCAAAATTTCCTT-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCCTGAAG--GCATCTTCTTTCAGGACGGACCTTTGTGGAAGGAGCAGCGCCGC----TTTATCSizeHit CountTotal NormTotal
No Reads
droEle1
TCG----------------------------ACTCGGCTATTGATCCTGATCAAGAATATATATATTTTATGGGGTCGGGAACTCTTCC----------TTCTACCTGTTACATACTCTTCCAC----------------------C------CTTCGAGTAACGGGTG--------AA--------AA-AAT-AGAAAAAAAAAGGG----------------------ATA--------TTTAA---------------------------------------------------------------AAAGCT--------------------TTTAACAATTG----------------------------------------TTCCTATG-----------GAAGC----TTTAAGSizeHit CountTotal NormTotal
No Reads
droRho1
ACAGA--------CGGACAT-GGCTATATCGACTCGGCTAGTGACCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCC----------TTCTAGCTGTTACATACTTTTGCACGAATACAATATACCCTT-TTACT------CTACGAGTAACGGGTA--------TA--------AT-AAA--C--AAAAAATTGT----------------------TTAAGCTTAAATCAGATAAATAATTGATTAACTC-------------------------------------------------------------------------------------ATTTGTTAGTTAGAATCACATAT-----------TGACTTTTAAGAAAAAA--------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATAAATACTTAGTTAAAT--------------------------------------------------------------------TTC----------TTTTGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCCAG--GAATCTTCTTTCAGGACGGACCCCTGTGGAAGGAGCAGCGTCGC----TTTATCSizeHit CountTotal NormTotal
No Reads
droTak1
TCG----------------------------ACTCGGCTAGTGATCCTGATCAAGAATATATATAGTTTATAGGGTCGGAAACGCTTCC----------TTTTACCTGTTACATACTTTTGCACGAATCTAATATACCCTT-TTACT------CTACGAGTAACGGGTA--------TA--------AT-AAA---------ATTTAC----------------------A------------------------------------------------------------------------------TAAATTTCATTACAGCCAAATACAT-----------------------------------------------------------------------------TTTAGTAATSizeHit CountTotal NormTotal
No Reads
droEug1
TGTGT--------TTAAT-------------------------------------------------TTTTAAAATAAAACTTTTC-ACAACGACGTGCACTAATTGCTTAAACACAGCTGAAC--------------------G--------------TTACAAAGCCTAATCATTAA--------AAAAAATATTAAATAGCTTCCGCCACCTTAAGTGATAAGCCCAAGTAGCCTAGACGGTTAATATTATTAATAAATTC-------------------------------------------------------------------------------------AAA---TTTCCGTAG--GTATTTTCTTTCAGGATGGACCCTTATGGAAGGAGCAGCGTCGC----TTCATCSizeHit CountTotal NormTotal
No Reads
dm3
TTGAT--------TGATATT-TAATATAACTATTTAATTTTTGCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTCGCAG--GGATCTTTTTCCAGGATGGCCCCCTGTGGAAGGAGCAACGTCGC----TTCATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGGAGCAACGTCGC----TTCATC2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGATGGCCCCCTGTGGAAGGAGC..................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TCCAGGATGGCCCCCTGTGGAAGGAGC..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTGTGGAAGGAGCAACGTCG...........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GGCCCCCTGTGGAAGGAGCAACGTCGC----......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGAGCAACGTCGC----TTC...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTGTGGAAGGAGCAACGTC............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................ATGGCCCCCTGTGGAAGGAGC..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droSim2
ACGGA--------CAGAC---GGC-AGTTCGACTCGGCTATTGATCCTGATTAAGAATATATATACTTTATATGGTCGGAAACGCTTCC----------TTCTGCCTGTTACATACTTATCAAGGAATGTAGTATACCCTT-TCACT------CCACGAGTAACGGGTA--------TA--------ATTAAAAAA--AAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................GAATATATATACTTTATATGGTCGGA....................................................................................................................................................................................................................................................................................................................................................26209.751950000000195000000000
.......................................ATTGATCCTGATTAAGAATATATA.....................................................................................................................................................................................................................................................................................................................................................................2476.00420000008415150000000
............................................................ATATACTTTATATGGTCGGAAACGC...............................................................................................................................................................................................................................................................................................................................................25204.7595000000950000000000
.........................................................................................................CTGTTACATACTTATCAAGGAATGTA.................................................................................................................................................................................................................................................................................................2612.00200000000002000000
.......................................ATTGATCCTGATTAAGAATATATATACT.................................................................................................................................................................................................................................................................................................................................................................2832.00600000011310000000
....................................................................TATATGGTCGGAAACGCTTCC----------TTC..............................................................................................................................................................................................................................................................................................................................24201.3026000000001025000000
............................................................................................................................................................CGAGTAACGGGTA--------TA--------ATTAAAAAA--A.............................................................................................................................................................................................................................2511.00100000000100000000
............................TCGACTCGGCTATTGATCCTGATTAAGA............................................................................................................................................................................................................................................................................................................................................................................2851.00500000005000000000
...........................................................TATATACTTTATATGGTCGGAAACGCT..............................................................................................................................................................................................................................................................................................................................................27200.9519000000000000190000
.......................................ATTGATCCTGATTAAGAATAT........................................................................................................................................................................................................................................................................................................................................................................21100.90900000051210000000
................................CTCGGCTATTGATCCTGATTAAGAA...........................................................................................................................................................................................................................................................................................................................................................................2560.67400000010030000000
............................TCGACTCGGCTATTGATCCTGATT................................................................................................................................................................................................................................................................................................................................................................................2480.63500200003000000000
.......................................ATTGATCCTGATTAAGAATATAT......................................................................................................................................................................................................................................................................................................................................................................2380.50400000010300000000
.....................................................................................TTCC----------TTCTGCCTGTTACATACTTATC...........................................................................................................................................................................................................................................................................................................2620.50100000001000000000
.................................TCGGCTATTGATCCTGATTAAGAA...........................................................................................................................................................................................................................................................................................................................................................................2470.43300000012000000000
............................TCGACTCGGCTATTGATCCTGATTAAGAA...........................................................................................................................................................................................................................................................................................................................................................................2950.40200000000200000000
.........................................TGATCCTGATTAAGAATATATATACT.................................................................................................................................................................................................................................................................................................................................................................2630.33100000000100000000
.....................................................................................TTCC----------TTCTGCCTGTTACATACTTA.............................................................................................................................................................................................................................................................................................................2430.33100000000100000000
.......................................ATTGATCCTGATTAAGA............................................................................................................................................................................................................................................................................................................................................................................17130.31400000000130000000
.........................................................TATATATACTTTATATGGTCGGAAACG................................................................................................................................................................................................................................................................................................................................................27200.30600000000000060000
......................................................................TATGGTCGGAAACGCTTCC----------TTCTGCC..........................................................................................................................................................................................................................................................................................................................26200.30600000000006000000
..................................CGGCTATTGATCCTGATTAAGAATA.........................................................................................................................................................................................................................................................................................................................................................................2580.25200000001100000000
.........................................................TATATATACTTTATATGGTCGGAAAC.................................................................................................................................................................................................................................................................................................................................................26200.25500000000000050000
..........................................................ATATATACTTTATATGGTCGGAAAC.................................................................................................................................................................................................................................................................................................................................................25200.25500000000000050000
.......................................ATTGATCCTGATTAAGAATATA.......................................................................................................................................................................................................................................................................................................................................................................2290.22200000010010000000
............................TCGACTCGGCTATTGATCCTGATTAAGAAT..........................................................................................................................................................................................................................................................................................................................................................................3050.20100000001000000000
....................................GCTATTGATCCTGATTAAGAATATATA.....................................................................................................................................................................................................................................................................................................................................................................2750.20100000000100000000
.......................................ATTGATCCTGATTAAGAATATATATACTA................................................................................................................................................................................................................................................................................................................................................................2950.20100000001000000000
............................TCGACTCGGCTATTGATCCTGATTAAG.............................................................................................................................................................................................................................................................................................................................................................................2760.17100000001000000000
......................................TATTGATCCTGATTAAGAATATATA.....................................................................................................................................................................................................................................................................................................................................................................2560.17100000000010000000
....................................................................TATATGGTCGGAAACGCTTCC----------TTCTGC...........................................................................................................................................................................................................................................................................................................................27200.15300000000003000000
..........................................................ATATATACTTTATATGGTCGGAAACGCT..............................................................................................................................................................................................................................................................................................................................................28200.15300000000000030000
....................................................................TATATGGTCGGAAACGCTTCC----------T................................................................................................................................................................................................................................................................................................................................22200.15300000000003000000
...............................................................TACTTTATATGGTCGGAAACGCTTC............................................................................................................................................................................................................................................................................................................................................25200.15300000020010000000
......................................................................TATGGTCGGAAACGCTTCC----------.................................................................................................................................................................................................................................................................................................................................19200.15300000000003000000
.......................................ATTGATCCTGATTAAGAATATATAT....................................................................................................................................................................................................................................................................................................................................................................2570.14100000001000000000
..................................CGGCTATTGATCCTGATTAAGAATAT........................................................................................................................................................................................................................................................................................................................................................................2670.14100000000010000000
.................................TCGGCTATTGATCCTGATTAAGAATA.........................................................................................................................................................................................................................................................................................................................................................................2670.14100000010000000000
.................................TCGGCTATTGATCCTGATTAAGAAT..........................................................................................................................................................................................................................................................................................................................................................................2570.14100000000100000000
.................................TCGGCTATTGATCCTGATTAAG.............................................................................................................................................................................................................................................................................................................................................................................2280.13100000000100000000
............................TCGACTCGGCTATTGATCCTGATTAA..............................................................................................................................................................................................................................................................................................................................................................................2680.13100000001000000000
......................................................................TATGGTCGGAAACGCTTCC----------TTCTGC...........................................................................................................................................................................................................................................................................................................................25200.10200020000000000000
...................................................................TTATATGGTCGGAAACGCTTCC----------TTC..............................................................................................................................................................................................................................................................................................................................25200.10200000020000000000
........................................................ATATATATACTTTATATGGTCGGAAACGC...............................................................................................................................................................................................................................................................................................................................................29200.10200000002000000000
..................................................................TTTATATGGTCGGAAACGC...............................................................................................................................................................................................................................................................................................................................................19200.10200000000002000000
.......................................ATTGATCCTGATTAAGAATATATT.....................................................................................................................................................................................................................................................................................................................................................................24100.10100000010000000000
.......................................ATTGATCCTGATTAAGAATA.........................................................................................................................................................................................................................................................................................................................................................................20110.09100000000100000000
.................................TCGGCTATTGATCCTGATTA...............................................................................................................................................................................................................................................................................................................................................................................20110.09100000000010000000
......................................TATTGATCCTGATTAAGAAT..........................................................................................................................................................................................................................................................................................................................................................................20120.08100000000100000000
......................................TATTGATCCTGATTAAGA............................................................................................................................................................................................................................................................................................................................................................................18120.08100000000010000000
......................................TATTGATCCTGATTAAGAA...........................................................................................................................................................................................................................................................................................................................................................................19120.08100000000001000000
.......................................ATTGATCCTGATTAAGAATATATAG....................................................................................................................................................................................................................................................................................................................................................................25140.07100000000010000000
.........................AGTTCGACTCGGCTATTGATC......................................................................................................................................................................................................................................................................................................................................................................................21150.07100000010000000000
....................................GCTATTGATCCTGATT................................................................................................................................................................................................................................................................................................................................................................................16150.07100000000001000000
........................................................ATATATATACTTTATATGGTCGGAA...................................................................................................................................................................................................................................................................................................................................................25200.05100100000000000000
...........................................................................................................................................................ACGAGTAACGGGTA--------TA--------ATTA.....................................................................................................................................................................................................................................20200.05100000000001000000
...............................................................TACTTTATATGGTCGGAAACGCTTCC----------.................................................................................................................................................................................................................................................................................................................................26200.05100000000100000000
...............................................................TACTTTATATGGTCGGAAACGCTTCC----------TT...............................................................................................................................................................................................................................................................................................................................28200.05100000000000010000
.............................................................TATACTTTATATGGTCGGAAACGCTT.............................................................................................................................................................................................................................................................................................................................................26200.05100000000000010000
......................................................GAATATATATACTTTATATGGTC.......................................................................................................................................................................................................................................................................................................................................................23200.05100000000000010000
....................................................................................CTTCC----------TTCTGCCTGTT......................................................................................................................................................................................................................................................................................................................16200.05100000010000000000
....................................................................................................TCTGCCTGTTACATACT...............................................................................................................................................................................................................................................................................................................17200.05100000010000000000
..................................................................TTTATATGGTCGGAAAC.................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
...........................TTCGACTCGGCTATTG.........................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
..........................................................ATATATACTTTATATGGTCGGAAACGC...............................................................................................................................................................................................................................................................................................................................................27200.05100000000000010000
........................................................ATATATATACTTTATATGGTCGGAAA..................................................................................................................................................................................................................................................................................................................................................26200.05100000000001000000
............................TCGACTCGGCTATTGATCCTGA..................................................................................................................................................................................................................................................................................................................................................................................22200.05100000010000000000
...............................................................TACTTTATATGGTCGGAAACGCTTCC----------TTC..............................................................................................................................................................................................................................................................................................................................29200.05100000001000000000
............................................................ATATACTTTATATGGTCGGAAACGCA..............................................................................................................................................................................................................................................................................................................................................26200.05100000010000000000
........................................................................................C----------TTCTGCCTGTTACATACT...............................................................................................................................................................................................................................................................................................................19200.05100000000010000000
...............................................................TACTTTATATGGTCGGAAACGCTT.............................................................................................................................................................................................................................................................................................................................................24200.05100000001000000000
...........................................................................................................................................................ACGAGTAACGGGTA--------TA--------A........................................................................................................................................................................................................................................17200.05100000000001000000
.........................................................TATATATACTTTATATGGTCGGAAACGCT..............................................................................................................................................................................................................................................................................................................................................29200.05100000010000000000
......................................................................TATGGTCGGAAACGCTTCC----------TTCTGG...........................................................................................................................................................................................................................................................................................................................25200.05100000000001000000
........................................................ATATATATACTTTATATGGTCGGAAACG................................................................................................................................................................................................................................................................................................................................................28200.05100000000000010000
.............................CGACTCGGCTATTGATCCTGA..................................................................................................................................................................................................................................................................................................................................................................................21200.05110000000000000000
.......................................................AATATATATACTTTATATGGTCGGA....................................................................................................................................................................................................................................................................................................................................................25200.05100000000000001000
..........................................................ATATATACTTTATATGGTCGGAAA..................................................................................................................................................................................................................................................................................................................................................24200.05100000001000000000
............................................................................CGGAAACGCTTCC----------TTCTGCCTGTTACATACT...............................................................................................................................................................................................................................................................................................................31200.05100000010000000000
..................................................................TTTATATGGTCGGAAACGCTTCC----------TT...............................................................................................................................................................................................................................................................................................................................25200.05100000000001000000
.............................................................TATACTTTATATGGTCGGAAA..................................................................................................................................................................................................................................................................................................................................................21200.05100000000000001000
...............................................................TACTTTATATGGTCGGAAACGC...............................................................................................................................................................................................................................................................................................................................................22200.05100000000000001000
..............................GACTCGGCTATTGATCCTG...................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
droSec2
TGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCGCAG--GCATCTTTTTCCAGGATGGCCCCCTGTGGAAGGAGCAGCGTCGG----TTCATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGAGCAGCGTCGG----TTCA..2111.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................GGCCCCCTGTGGAAGGAGCAGC...............2211.0010010
............................................................................................................................................................................................................................................................................................................................................................................................GATGGCCCCCTGTGGAAGGAGCA.................2311.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................ATGGCCCCCTGTGGAAGGAGC..................2111.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................ATGGCCCCCTGTGGAAGGAGCAGC...............2411.0010010
.................................................................................................................................................................................................................................................................................................................................................................................TCTTTTTCCAGGATGGCCC................................1911.0010010
............................................................................................................................................................................................................................................................................................................................................................................................GATGGCCCCCTGTGGAAGGAGCAGC...............2511.0010010
droYak3
TTGAT--------TGC----------------------TATTTAATAT-------------------------TACT--AAATAATTTT----------TCTTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTTGCAG--GCATCTTTTTCCAGGATGGCCCCTTGTGGAAGGAGCAGCGTCGC----TTCATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................CCAGGATGGCCCCTTGTGGAAGGAGCAGC...............2911.00100100000000
droEre2
ACAGA--------CGGACAT-GACCATATCGACCCGGCTTTTGATCCTGATCAAGAATATATATACTTTATATGATCGGAAAAGCTTCC----------TTCTGCCTGTTACATACTTTTCAACGAA----------CCTT-TTACT------CTACGAGTACCGGGTA--------TAAATAGACTGT--AT-ACTAAAACAATTGT----------------------ATA--------TTGGTGAAATTATTGCTAAATTT-------------------------------------------------------------------------------------ATAAATTATTTATA------------------------------------------------------GACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 11:40 PM