ID:

dvi_22192

 Coordinate:

scaffold_13052:1543509-1543659 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.7 -8.5 -8.5

Flybase annnotation

exon [dvir_GLEANR_162:10]; CDS [Dvir\GJ15760-cds]; intron [Dvir\GJ15760-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAAGTCTGAACAGGACAAGGAGAAGGAAGAAGCTGAAAAGAAGCGAAAGGTAATTGAAACTAAAACTAAAACTAAAACCAAAGAAATCAGTCAACAAGAAGACTTAGCCGAAAGAGAGCAGCAAACAAATCAAATATCTTTAAAGGTCCAAAATAATCAGATTGTTAATCAGCAAATTAGTGTCACCTCCTACGAACAAGCTTACATTCAAGAGCAGCAATCAACGCTTATTGTGCAACAAACTAAGCAA
**************************************************************************...............((((........))))..(((...(((((...................)))))...)))..............(((((....)))))......................***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 V053
head
 SRR060668
160x9_males_carcasses_total
 SRR060664
9_males_carcasses_total
 M047
female body
 M028
head
 M061
embryo
 SRR060665
9_females_carcasses_total
 SRR060678
9x140_testes_total
 V047
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060687
9_0-2h_embryos_total
...............................................................................................................................................................................................................TTCAAGAGCAGCAATCAACG........................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AAAACCAAAGAAATCAGTC.............................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTAGTGTCACCTCCTACGAAC..................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................AATAATCAGATTGTTAATC................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................AGACTTAGCCGAAAGAGAGCAGC................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TAATCAGATTGTTAATCAGCAAAT......................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........GAACAGGACAAGGAGAAGGAAGAAGCT........................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................GAAGGAAGAAGCTGAAAAG.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......CTGAACAGGACAAGGAGAAGGA............................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............GGACAAGGAGAAGGAAGAAG.......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................AGACTTAGCCGAAAGAGA..................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........CAGGACAAGGAGAAGGAAGAAGCTGAA..................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ACCAAAGAAATCAGTCAACA.......................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................AGCTGAAAAGAAGCGAAAGGAA...................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................TTCAAGAGCAGCAATCAACGCT...................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................AGGAAGAAGCTGAAAAGAAGCGAA........................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................AGGAGAAGGAAGAAGCTGAAAAG.................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TCAACGCTTATTGTGCAAC........... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................CTGAAAAGAAGCGAAAGG........................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................AGCTTACATTCAAGAGCAGC................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................GCTGAAAAGAAGCGAAAG......................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
........GAACAGGACAAGGAGAAGGAA.............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GACTTAGCCGAAAGAGAGCA.................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........GAACAGGACAAGGAGAAGGAAG............................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......CTGAACAGGACAAGGAGAAGGAAGAAGC......................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................GAAGGAAGAAGCTGAAAA................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................AATATCTTTAAAGGTCCAA................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................AAGGAGTTGAAAAGAAGGGAAA.......................................................................................................................................................................................................... 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................AAGGCTGAAGCTGAAAAGA................................................................................................................................................................................................................. 19 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GAACAAGCTTCCATTCAACG..................................... 20 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................GATATGAAAGAAGCTGAAAAG.................................................................................................................................................................................................................. 21 3 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................GAAGGATGAAGATGACAAGAA................................................................................................................................................................................................................ 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................AAGAAATCTGTCATCAAGAC...................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..........ACAGATCAAGGAGAAGGAGGA............................................................................................................................................................................................................................ 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................GAAGAAGAGGAAAAGAAGCCAA........................................................................................................................................................................................................... 22 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.....TTTGGACAGGACAAGGAAA................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GAGTCAACGCTTATTGAGC.............. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTTCAGACTTGTCCTGTTCCTCTTCCTTCTTCGACTTTTCTTCGCTTTCCATTAACTTTGATTTTGATTTTGATTTTGGTTTCTTTAGTCAGTTGTTCTTCTGAATCGGCTTTCTCTCGTCGTTTGTTTAGTTTATAGAAATTTCCAGGTTTTATTAGTCTAACAATTAGTCGTTTAATCACAGTGGAGGATGCTTGTTCGAATGTAAGTTCTCGTCGTTAGTTGCGAATAACACGTTGTTTGATTCGTT
*****************************************************...............((((........))))..(((...(((((...................)))))...)))..............(((((....)))))......................************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060663
160_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR060687
9_0-2h_embryos_total
 V053
head
..................................................................................TGTTTAGTCTGTTGTTCT....................................................................................................................................................... 18 2 20 0.10 2 0 1 1 0
................................................................................TTTGTTTAGTCTGTTGTTC........................................................................................................................................................ 19 2 17 0.06 1 1 0 0 0
...............................................................................................................................................TCCCAGGTTTTACTAGACT......................................................................................... 19 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13052:1543459-1543709 + dvi_22192 AAAAGTCTGA---ACAGGA------------CAAGGAGAAGGAAGAAGCTGAAAAGAAGCGAAAGGTAATTGAAACTAAAACTAAAACTAAAA-------------------------------------CCAAAGAAATCAG-----------TCAACAAGAAGACTTAGCCGAAAGAGA----------------GCA-GCA---------------------------AACAAATCAAATATCTTTAAAGGTCCAAAA------TAATCAGATTGTTA------ATCAGCAAATTAGTGTCACCTCCTA---CGAACAAGCTTACATT---C---AAGAG---CAGCAATCAACGCTTATTGTGCAACAAACTAAGCAA
droMoj3 scaffold_6498:550416-550612 + AGAAAGCTGAGAA---GGA------------CA------AAGAAGAAGCTGAAAAGAAGCGTAAGGTAATTGAAAAAACTCTA---------GCCAAAGAGGTCCACGAAGAACAGATTAACATCCGAACTGAGCAACATCAA------------------------------------------------------GCA--------------------------------ACAGTTGAAAAGTCTCTAAAAGTCCAGAAAGCCCAA------------------------------------------------------------------GAACAAGAG---CAGCAATCTATTGTTATAGTGCAGCAATCTAAGCAA
droGri2 scaffold_14822:550447-550667 + ACAAGGAGGAGGAGAAGGA------------GGAG---GAGGCCG------AAAAGAAAAGCAAGGTAATTGAACAAAAACAA---------AAAGA------------------------------------------GCAACAACCACTTGTACAACA-----------------AAAA----------------GAA-GAA---GTCG----------TACAACAACA---------------------------AATCGTACAACAGCAAGTCGTAC------AACAACAAGTTCAAGTCCAATTCGATAGCCAACAAGTTGTCAGTCAAC---AGCAACAACAGCAGTCAACTCTATTTGT------AACAGCACAA
droWil2 scf2_1100000004943:1673057-1673295 + AAAAGGAAAAGGAGCAGGA------------GAAGAGCGAGGCCG------AAAAGAAACAAAAGGTAATTGAGAGTAAGCAA---------AAGGAAGAGGTT----------------------------------------AAGCAATTACGCGAAG-----------------AGGA----------------GCA-GAA---GCAGAAGCAGACCCTAGAAGTTCA---------------------------GACAGTAAATCAACAAGTGAAACTGCAACAGCAGCAGGTTGTAGTGCAAGTCGA---AGAACATGTAGCTATT---C---AGGAA---CAAAAGTCGTCCATTAAGTTGGAGAAAAGTGAAAAA
droPer2 scaffold_42:556362-556502 + AATTGGAAAAGGAGAAGGAGAAGGAAAAGGAAAAGGAGAGAAATGAAACCGATAAAAAACAAAAGGTAATTGATTGTAAAAAAC-----------------------------------------------------CATCTG-------------------------------AAAATGT----------------ACCAGCTCTAA---TAGTAG-------------------------------------------------------------------------------------------------------------------------AAGAG---GAGCAGTT--------------GACAAACCTAGGAT
droAna3 scaffold_13089:590175-590259 + AAAAGCCCAAAAACAATGA------------TGCATCCGATGCCA------ACAAGGAATTAAAGGTAATTTAACACAAATAG-----------------------------------------------------------------------------------------------------------------------------------CATAACTTTAAAT------------------A----------------------------------------------------------------------------------------------------------------------------------AAAAGA
droBip1 scf7180000395575:28053-28146 - AGAAGACCATAGAAATAGA------------TGCATCCGATCCCA------AAAAGGACCAAGAGGTAACTTAAAACAATGAA-----------------------------------------------------------------------------------------------------------------------------------CACAACTTTAAAT------------------T-------------------------------------------------------------------------------------------------------------------------TAAAAAAATAATTAA
droKik1 scf7180000301758:6962-7027 + AAGAAGAGCAGCAGAAGGA------AAAAAACAAGCAAAAAGATGAAATGGAAAAGCGGCTTCAGGTAATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454040:346366-346423 + AGCAGCCAAAAGAAAAGGA------------CAAATTAAAGGAAGAAAAAGAAAAGGAACAAAAGGTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491238:459271-459341 - ACCAGCCTAAAGAAAAGGA------------TAAGTCTAAGGCTGAGAAAGAAAAGGAGCAAAAGGTAAATGAAAACACTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777286:46249-46393 - AACAGATTAAGGAAAAGGA------------TAAGTCTAAGGCTGACAAAGAAAAGGAGCAAAAGGTAAATGAAAAAACAACAA-----------------------------------------------------TGTCAG-------------------------------AAAGTAT----------------TGA-GCACAGG---CAGCAGAGCTTAGAAGTTGAAACAAAACAACAATTTCAA-------------------------------------------------------------------------------------------------------------------------AAGATTGAAAA
droBia1 scf7180000301495:670030-670109 + AACAACCCAAAGAAAAGGA------------TAAGTCGAAGGCAGAAAAGGAAAAAGAGGAAAAGGTAAATAAAAATATAAATA-----------------------------------------------------CATCTA-------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415288:82851-82943 + AACAGCCCAAAGAAAAGGA------------TAAGTCTAAGGCTGAAAAAGAAAAAGAACAAAAGGTAAATAAAAATACAACAA-----------------------------------------------------TATCGG-------------------------------AAAGTGA----------------AAA-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACA
droEug1 scf7180000408984:444605-444665 - GGCAGCCCAAA------------------------TCTAAGACTGAAAAGGATACCGACCAAAAGGTAAATAAGAGAAGAGAAA-----------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr4:752807-752894 + AAAAGCCGAAAGAAAAGGA------------GAAGACCAAGAATGAAAAAGAAGTGGAGCAAAAGGTAAATAAAAAATCGAAGA----------------------------------------------TAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATCAGAAA
droSim2 3l:15711772-15711888 + CAAAGCCAGAGGAGGGCAAGAAGGAGGA---GCCGCCCAAGGGAGAAGACAAAAAGGAGGAAGCAAAGGATGACAAGCCAAAAG-----------------------------------------------------AACCGG-------------------------------AAAA---GAAAGATTAAGGAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCAGCAA
droSec2 scaffold_0:8192631-8192747 + CAAAGCCAGAGGAGGGCAAGAAGGAGGA---GCCGCCCAAGGGAGAAGACAAAAAGGAGGAAGCAAAGGATGACAAGCCAAAAG-----------------------------------------------------AACCGG-------------------------------AAAA---GAAAGATTAAGGAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCAGCAA
droYak3 4:816758-816841 + AGAAACCAAAAGAAAAGGA------------AAACCCCAAGACTGAAAAAGAAGAGGAGCAAAAGGTAAATGGAAAACCAAAA-----------------------------------------------TCAGTAATATCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4512:509792-509875 - AGAAGCCGAAAGAAAAGGA------------AAAGAGCAAGACTGAAAAAGATGAGGAGCGAAAGGTAAATAAAATA-CAAAAA----------------------------------------------TCAGTAATATCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAAAGTCTGA---ACAGGA------------CAAGGAGAAGGAAGAAGCTGAAAAGAAGCGAAAGGTAATTGAAACTAAAACTAAAACTAAAA-------------------------------------CCAAAGAAATCAG-----------TCAACAAGAAGACTTAGCCGAAAGAGA----------------GCA-GCA---------------------------AACAAATCAAATATCTTTAAAGGTCCAAAA------TAATCAGATTGTTA------ATCAGCAAATTAGTGTCACCTCCTA---CGAACAAGCTTACATT---C---AAGAG---CAGCAATCAACGCTTATTGTGCAACAAACTAAGCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................TT---C---AAGAG---CAGCAATCAACG........................2011.001000000000000000000000000000000000000000000000000000000000000100
.........................................................................................AAAA-------------------------------------CCAAAGAAATCAG-----------TC..................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TTAGTGTCACCTCCTA---CGAAC..............................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................AA------TAATCAGATTGTTA------ATC............................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................AGACTTAGCCGAAAGAGA----------------GCA-GC...................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TAATCAGATTGTTA------ATCAGCAAAT.....................................................................................2411.001000000000000000000000000000000000000000000000000000000000000100
........GA---ACAGGA------------CAAGGAGAAGGAAGAAGCT............................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
.....................................GAAGGAAGAAGCTGAAAAG......................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
......CTGA---ACAGGA------------CAAGGAGAAGGA...................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
................GGA------------CAAGGAGAAGGAAGAAG..............................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................AGACTTAGCCGAAAGAGA----------------.........................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
..............CAGGA------------CAAGGAGAAGGAAGAAGCTGAA.........................................................................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................A-------------------------------------CCAAAGAAATCAG-----------TCAACA..............................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
.........................................................................................................................................................................................................................................................................................................................................TT---C---AAGAG---CAGCAATCAACGCT......................2211.001000000000000000000000000000000000000000000000000000000000000100
.......................................AGGAAGAAGCTGAAAAGAAGCGAA...............................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.................................AGGAGAAGGAAGAAGCTGAAAAG......................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TCAACGCTTATTGTGCAAC...........1911.001000000000000000000000000000000000000000000000000000000000000100
................................................CTGAAAAGAAGCGAAAGG............................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................................................................................................................................AGCTTACATT---C---AAGAG---CAGC................................2011.001000000000000000000000000000000000000000000000000000000000000100
...............................................GCTGAAAAGAAGCGAAAG.............................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000010000000000000000000000000000000000
........GA---ACAGGA------------CAAGGAGAAGGAA..................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................................................................................................GACTTAGCCGAAAGAGA----------------GCA-.....................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
........GA---ACAGGA------------CAAGGAGAAGGAAG.................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
......CTGA---ACAGGA------------CAAGGAGAAGGAAGAAGC.............................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
.....................................GAAGGAAGAAGCTGAAAA.......................................................................................................................................................................................................................................................................................................................................1811.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................AATATCTTTAAAGGTCCAA...........................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
AGAAAGCTGAGAA---GGA------------CA------AAGAAGAAGCTGAAAAGAAGCGTAAGGTAATTGAAAAAACTCTA---------GCCAAAGAGGTCCACGAAGAACAGATTAACATCCGAACTGAGCAACATCAA------------------------------------------------------GCA--------------------------------ACAGTTGAAAAGTCTCTAAAAGTCCAGAAAGCCCAA------------------------------------------------------------------GAACAAGAG---CAGCAATCTATTGTTATAGTGCAGCAATCTAAGCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................CAGAAAGCCCAA------------------------------------------------------------------GAACAAG.........................................1911.001100000
.........................................GAAGAAGCTGAAAAGAAGCGTAAG.............................................................................................................................................................................................................................................................................................................................2411.001000001
.....................................................................................................................................................................................................................................................................AGCCCAA------------------------------------------------------------------GAACAAGAG---CAGCAATCTAT.........................2711.001000100
droGri2
ACAAGGAGGAGGAGAAGGA------------GGAG---GAGGCCG------AAAAGAAAAGCAAGGTAATTGAACAAAAACAA---------AAAGA------------------------------------------GCAACAACCACTTGTACAACA-----------------AAAA----------------GAA-GAA---GTCG----------TACAACAACA---------------------------AATCGTACAACAGCAAGTCGTAC------AACAACAAGTTCAAGTCCAATTCGATAGCCAACAAGTTGTCAGTCAAC---AGCAACAACAGCAGTCAACTCTATTTGT------AACAGCACAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................ACAAAAACAA---------AAAGA------------------------------------------GCAACAACC..........................................................................................................................................................................................................................................2411.00110
droWil2
AAAAGGAAAAGGAGCAGGA------------GAAGAGCGAGGCCG------AAAAGAAACAAAAGGTAATTGAGAGTAAGCAA---------AAGGAAGAGGTT----------------------------------------AAGCAATTACGCGAAG-----------------AGGA----------------GCA-GAA---GCAGAAGCAGACCCTAGAAGTTCA---------------------------GACAGTAAATCAACAAGTGAAACTGCAACAGCAGCAGGTTGTAGTGCAAGTCGA---AGAACATGTAGCTATT---C---AGGAA---CAAAAGTCGTCCATTAAGTTGGAGAAAAGTGAAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................GCGAGGCCG------AAAAGAAAC..................................................................................................................................................................................................................................................................................................................................1811.00100100
....................................................AAAGAAACAAAAGGTAATTGAGAGG.................................................................................................................................................................................................................................................................................................................2511.00110000
....................................................................................................................................................AATTACGCGAAG-----------------AGGA----------------GC.......................................................................................................................................................................................1811.00100001
..AAGGAAAAGGAGCAGGA------------GAA............................................................................................................................................................................................................................................................................................................................................................2011.00100100
...............................................................................................................................................................................................................................................................................................................................CATGTAGCTATT---C---AGGAA---CA..................................2011.00110000
................................AAGAGCGAGGCCG------AAAAGAAAC..................................................................................................................................................................................................................................................................................................................................2211.00100001
.......................................................................................................................................................................................................................................................................................................................A---AGAACATGTAGCTATT---C---AGGAA---CA..................................2511.00110000
...................................AGCGAGGCCG------AAAAGAAAC..................................................................................................................................................................................................................................................................................................................................1911.00100100
...............................GAAGAGCGAGGCCG------AAAAGAAACA.................................................................................................................................................................................................................................................................................................................................2411.00100010
.......AAAGGAGCAGGA------------GAAGAGCGA......................................................................................................................................................................................................................................................................................................................................................2111.00100010
...........GAGCAGGA------------GAAGAGCGAGGCCG------A..........................................................................................................................................................................................................................................................................................................................................2311.00100100
droPer2
AATTGGAAAAGGAGAAGGAGAAGGAAAAGGAAAAGGAGAGAAATGAAACCGATAAAAAACAAAAGGTAATTGATTGTAAAAAAC-----------------------------------------------------CATCTG-------------------------------AAAATGT----------------ACCAGCTCTAA---TAGTAG-------------------------------------------------------------------------------------------------------------------------AAGAG---GAGCAGTT--------------GACAAACCTAGGATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................GGAAAAGGAGAGAAATGAA...............................................................................................................................................................................................................................................................................................................................................1913.003000003
...........................AGGAAAAGGAGAGAAATGAA...............................................................................................................................................................................................................................................................................................................................................2013.003000003
.............................GAAAAGGAGAGAAATGAAA..............................................................................................................................................................................................................................................................................................................................................1913.003000003
.............GAAGGAGAAGGAAAAGGAA..............................................................................................................................................................................................................................................................................................................................................................1912.002000002
........................AAAAGGAAAAGGAGAGAA....................................................................................................................................................................................................................................................................................................................................................1812.002000002
...........................AGGAAAAGGAGAGAAATGA................................................................................................................................................................................................................................................................................................................................................1912.002000002
.ATTGGAAAAGGAGAAGGAG..........................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.............................GAAAAGGAGAGAAATGAAACC............................................................................................................................................................................................................................................................................................................................................2111.001000001
...TGGAAAAGGAGAAGGAGAAGGAAA...................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.......................GAAAAGGAAAAGGAGAGAAATG.................................................................................................................................................................................................................................................................................................................................................2211.001000001
.......................GAAAAGGAAAAGGAGAGAAATGAA...............................................................................................................................................................................................................................................................................................................................................2411.001000001
..........................AAGGAAAAGGAGAGAAATGAA...............................................................................................................................................................................................................................................................................................................................................2111.001000001
..........................AAGGAAAAGGAGAGAAATGAAACC............................................................................................................................................................................................................................................................................................................................................2411.001100000
............................GGAAAAGGAGAGAAATGA................................................................................................................................................................................................................................................................................................................................................1811.001000001
..........................AAGGAAAAGGAGAGAAATG.................................................................................................................................................................................................................................................................................................................................................1911.001000001
.......................GAAAAGGAAAAGGAGAGAA....................................................................................................................................................................................................................................................................................................................................................1911.001000001
...........................AGGAAAAGGAGAGAAATG.................................................................................................................................................................................................................................................................................................................................................1811.001000001
AATTGGAAAAGGAGAAGGAGAAGGAAAAG.................................................................................................................................................................................................................................................................................................................................................................2911.001000001
..TTGGAAAAGGAGAAGGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.........................AAAGGAAAAGGAGAGAAATGAA...............................................................................................................................................................................................................................................................................................................................................2211.001000001
..........GGAGAAGGAGAAGGAAAAGGAA..............................................................................................................................................................................................................................................................................................................................................................2211.001000001
....................AAGGAAAAGGAAAAGGAGAGAAAT..................................................................................................................................................................................................................................................................................................................................................2411.001000001
...TGGAAAAGGAGAAGGAGAA........................................................................................................................................................................................................................................................................................................................................................................1921.002000002
..............................AAAAGGAGAGAAATGAAAC.............................................................................................................................................................................................................................................................................................................................................1911.001000001
...TGGAAAAGGAGAAGGAGA.........................................................................................................................................................................................................................................................................................................................................................................1820.501001000
...........GAGAAGGAGAAGGAAAAGG................................................................................................................................................................................................................................................................................................................................................................1960.332000002
.............GAAGGAGAAGGAAAAGGA...............................................................................................................................................................................................................................................................................................................................................................1860.332000002
.....GAAAAGGAGAAGGAGAAGGA.....................................................................................................................................................................................................................................................................................................................................................................2060.332000002
...................GAAGGAAAAGGAAAAGGAGA.......................................................................................................................................................................................................................................................................................................................................................2030.331000001
..........GGAGAAGGAGAAGGAAAAGGA...............................................................................................................................................................................................................................................................................................................................................................2140.251000001
...........GAGAAGGAGAAGGAAAAG.................................................................................................................................................................................................................................................................................................................................................................1880.252000002
................GGAGAAGGAAAAGGAAAAG...........................................................................................................................................................................................................................................................................................................................................................1940.251000001
....GGAAAAGGAGAAGGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................1970.141000001
.....GAAAAGGAGAAGGAGAAGG......................................................................................................................................................................................................................................................................................................................................................................1980.131000001
..........GGAGAAGGAGAAGGAAAA..................................................................................................................................................................................................................................................................................................................................................................1880.131000001
....GGAAAAGGAGAAGGAGAA........................................................................................................................................................................................................................................................................................................................................................................1890.111000001
.....GAAAAGGAGAAGGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................18100.101000001
........AAGGAGAAGGAGAAGGAAA...................................................................................................................................................................................................................................................................................................................................................................19100.101000001
droAna3
AAAAGCCCAAAAACAATGA------------TGCATCCGATGCCA------ACAAGGAATTAAAGGTAATTTAACACAAATAG-----------------------------------------------------------------------------------------------------------------------------------CATAACTTTAAAT------------------A----------------------------------------------------------------------------------------------------------------------------------AAAAGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............ATGA------------TGCATCCGATGCCA------ACAAGGAAT..................................................................................................................................................................................................................................................................................................................................2712.002000002
...AGCCCAAAAACAATGA------------TGCATCCGATGC...................................................................................................................................................................................................................................................................................................................................................2811.001010000
............ACAATGA------------TGCATCCGATGCC..................................................................................................................................................................................................................................................................................................................................................2011.001010000
...........AACAATGA------------TGCATCCGATGCC..................................................................................................................................................................................................................................................................................................................................................2111.001010000
...............ATGA------------TGCATCCGATGCCA------ACAAGGAA...................................................................................................................................................................................................................................................................................................................................2611.001010000
droBip1
AGAAGACCATAGAAATAGA------------TGCATCCGATCCCA------AAAAGGACCAAGAGGTAACTTAAAACAATGAA-----------------------------------------------------------------------------------------------------------------------------------CACAACTTTAAAT------------------T-------------------------------------------------------------------------------------------------------------------------TAAAAAAATAATTAASizeHit CountTotal NormTotal
No Reads
droKik1
AAGAAGAGCAGCAGAAGGA------AAAAAACAAGCAAAAAGATGAAATGGAAAAGCGGCTTCAGGTAATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCCAAAAGAAAAGGA------------CAAATTAAAGGAAGAAAAAGAAAAGGAACAAAAGGTAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACCAGCCTAAAGAAAAGGA------------TAAGTCTAAGGCTGAGAAAGAAAAGGAGCAAAAGGTAAATGAAAACACTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AACAGATTAAGGAAAAGGA------------TAAGTCTAAGGCTGACAAAGAAAAGGAGCAAAAGGTAAATGAAAAAACAACAA-----------------------------------------------------TGTCAG-------------------------------AAAGTAT----------------TGA-GCACAGG---CAGCAGAGCTTAGAAGTTGAAACAAAACAACAATTTCAA-------------------------------------------------------------------------------------------------------------------------AAGATTGAAAASizeHit CountTotal NormTotal
No Reads
droBia1
AACAACCCAAAGAAAAGGA------------TAAGTCGAAGGCAGAAAAGGAAAAAGAGGAAAAGGTAAATAAAAATATAAATA-----------------------------------------------------CATCTA-------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AACAGCCCAAAGAAAAGGA------------TAAGTCTAAGGCTGAAAAAGAAAAAGAACAAAAGGTAAATAAAAATACAACAA-----------------------------------------------------TATCGG-------------------------------AAAGTGA----------------AAA-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACASizeHit CountTotal NormTotal
No Reads
droEug1
GGCAGCCCAAA------------------------TCTAAGACTGAAAAGGATACCGACCAAAAGGTAAATAAGAGAAGAGAAA-----------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AAAAGCCGAAAGAAAAGGA------------GAAGACCAAGAATGAAAAAGAAGTGGAGCAAAAGGTAAATAAAAAATCGAAGA----------------------------------------------TAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAATCAGAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................ACCAAGAATGAAAAAGAAGTGGAGCAAA...............................................................................................................................................................................................................................................................................................................................28111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AAAGCCGAAAGAAAAGGA------------GA.............................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................AGACCAAGAATGAAAAAGAAGTGG.....................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GAATGAAAAAGAAGTGGAGCA.................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000
...............................GAAGACCAAGAATGAAAAAGAAGTGG.....................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AGACCAAGAATGAAAAAGAAG........................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................ACCAAGAATGAAAAAGAAGTG......................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATGAAAAAGAAGTGGAGCA.................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
............AAAAGGA------------GAAGACCAAGAAT..................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................AAAGAAGTGGAGCAAAAGGA...........................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AAAAGCCGAAAGAAAAGGA------------GAAGACCA.......................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..AAGCCGAAAGAAAAGGA------------GA.............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............AGGA------------GAAGACCAAGAATGAAAAAG...........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........AAAGAAAAGGA------------GAAGACC........................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................AGACCAAGAATGAAAAAGAAGT.......................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GCCGAAAGAAAAGGA------------GAAGA..........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AATGAAAAAGAAGTGGAGCAAAAGC............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ATGAAAAAGAAGTGGAGCAAAAGG............................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AAAAGCCGAAAGAAAAGGA------------GA.............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AAGGA------------GAAGACCAAGAATGAA...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AAAAGGA------------GAAGACCAAGAATGAAATC............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AGAAAAGGA------------GAAGACCAAGA....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGA------------GAAGACCAAGAATGA................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AAAGCCGAAAGAAAAGGA------------GAA............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GAAAGAAAAGGA------------GAAGACCAAGAAT..................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGA------------GAAGACCAAGAATGAAAA.............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CAAGAATGAAAAAGAAGTGG.....................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................AAGTGGAGCAAAAGGTAAATAA.....................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...............................GAAGACCAAGAATGAAAAAGA..........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............AAGGA------------GAAGACCAAGAATGAAAA.............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GAAAGAAAAGGA------------GAAGACCAAGAA...................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGA------------GAAGACCAAGAATGAA...............................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GACCAAGAATGAAAAAGAAGT.......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TAAATAAAAAATCGAAGA----------------------------------------------TAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AGAATGAAAAAGAAGTGGAGCAA................................................................................................................................................................................................................................................................................................................................2311.0010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AAAAGCCGAAAGAAAAGG............................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................AATGAAAAAGAAGTGGAGCAAA...............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAAGACCAAGAATGAAAAAGAAGTG......................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GACCAAGAATGAAAAAGAAGTGGAGCA.................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........AAGAAAAGGA------------GAAGACCAAGAA...................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AAAAGCCGAAAGAAAAGGA------------...............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
AAAAGCCGAAAGAAAAGT............................................................................................................................................................................................................................................................................................................................................................................1880.7560000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000100000000010000100000000000000001000
...............................................AAAGAAGTGGAGCAAAAGC............................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................TGAAAAAGAAGTGGAGCAAAAGCA...........................................................................................................................................................................................................................................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GAAAAAGAAGTGGAGCAAAAGCA...........................................................................................................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AGAAGTGGAGCAAAAGAG...........................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
droSim2
CAAAGCCAGAGGAGGGCAAGAAGGAGGA---GCCGCCCAAGGGAGAAGACAAAAAGGAGGAAGCAAAGGATGACAAGCCAAAAG-----------------------------------------------------AACCGG-------------------------------AAAA---GAAAGATTAAGGAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCAGCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................A---GAAAGATTAAGGAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C.........1811.00100001000000000000
..............................................................GCAAAGGATGACAAGCCA..............................................................................................................................................................................................................................................................................................................1811.00100001000000000000
............................................GAAGACAAAAAGGAT...................................................................................................................................................................................................................................................................................................................................15200.20400000000004000000
droSec2
CAAAGCCAGAGGAGGGCAAGAAGGAGGA---GCCGCCCAAGGGAGAAGACAAAAAGGAGGAAGCAAAGGATGACAAGCCAAAAG-----------------------------------------------------AACCGG-------------------------------AAAA---GAAAGATTAAGGAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCAGCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AGAAACCAAAAGAAAAGGA------------AAACCCCAAGACTGAAAAAGAAGAGGAGCAAAAGGTAAATGGAAAACCAAAA-----------------------------------------------TCAGTAATATCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................GAAAAAGAAGAGGAGCAAAAGGA...........................................................................................................................................................................................................................................................................................................................2311.00100000010000
............AAAAGGA------------AAACCCCAAGACT..................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..........................................CTGAAAAAGAAGAGGAGCAAAAGGA...........................................................................................................................................................................................................................................................................................................................2511.00100000010000
...............................AAACCCCAAGACTGAAAAAG...........................................................................................................................................................................................................................................................................................................................................2011.00101000000000
........................................GACTGAAAAAGAAGAGGAGCAAGGA.............................................................................................................................................................................................................................................................................................................................2511.00100000010000
...................................CCCAAGACTGAAAAAGAAGA.......................................................................................................................................................................................................................................................................................................................................2011.00100100000000
...........................................TGAAAAAGAAGAGGAGCAAAAG.............................................................................................................................................................................................................................................................................................................................2211.00101000000000
droEre2
AGAAGCCGAAAGAAAAGGA------------AAAGAGCAAGACTGAAAAAGATGAGGAGCGAAAGGTAAATAAAATA-CAAAAA----------------------------------------------TCAGTAATATCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................AAAGATGAGGAGCGAAAG.............................................................................................................................................................................................................................................................................................................................1812.0020000020
..........................................CTGAAAAAGATGAGGAGCG.................................................................................................................................................................................................................................................................................................................................1911.0010000100
.GAAGCCGAAAGAAAAGGA------------AAA............................................................................................................................................................................................................................................................................................................................................................2111.0010000010
..............AAGGA------------AAAGAGCAAGACTGAA...............................................................................................................................................................................................................................................................................................................................................2111.0011000000
...................................AGCAAGACTGAAAAAGATGAGGAGC..................................................................................................................................................................................................................................................................................................................................2511.0010001000
.............AAAGGA------------AAAGAGCAAGAC...................................................................................................................................................................................................................................................................................................................................................1811.0010000010
....GCCGAAAGAAAAGGA------------AAAGA..........................................................................................................................................................................................................................................................................................................................................................2011.0010000010
................................................AAGATGAGGAGCGAAAGGA...........................................................................................................................................................................................................................................................................................................................1911.0010001000

Generated: 05/16/2015 at 08:57 PM