dvi_22172

Name	Class	Family	Strand
Helitron-1N1_DVir	RC	Helitron	-

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATGAACGGGGAGCAGCTATTCTGCTTGGCTCTTGATGCTGTCGAAGACTATGTATATTTTATAGGATGAGAGTTGTTTACGTTTGCCTGTTACGTACACTTGCACATTATACGGGTTCAGGGTCAAAATAAAAACAGAAGATTGCACTAGTTTGATTATAATCGTATATATATTTAATAATCGTTCATATGTTATTTCTAGGCATATTCTTTCAGGAAGGAATACTCTGGAAAGAACAGCGACGCTTTATC ************************************************(((((.....(((((.((((.((.....)).)))))))))...))))).........(((((((......(((((((.......((......))......)))))))....))))))).......(((((.(((....)))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	V053 head	M047 female body	M028 head	V047 embryo	SRR060660 Argentina_ovaries_total	SRR060666 160_males_carcasses_total	M027 male body	SRR060659 Argentina_testes_total	SRR060667 160_females_carcasses_total	SRR060669 160x9_females_carcasses_total	SRR060684 140x9_0-2h_embryos_total	SRR060664 9_males_carcasses_total	SRR060658 140_ovaries_total
...........................................................................................................................................................................................................................GAATGCTCTGGAAAGTGCAGC...........	21	3	5	2.00	10	0	2	5	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CTGGAAAGAACAGCGACGCT.....	20	0	3	0.67	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0
......................................................TATTTTATAGGATGAGAGTTGTTTA............................................................................................................................................................................	25	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TATAGGATGAGAGTTGTTTACG..........................................................................................................................................................................	22	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................ATTTTATAGGATGAGAGTTGTT..............................................................................................................................................................................	22	0	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................AGAATACTCTGGACAGAACA.............	20	2	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AGGAATACTCTGGAAAGAACAGC...........	23	0	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................GGAAAGAACAGCGACGCTTTATC	23	0	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................CTTTCAGGAAGGAATACTCTGGA....................	23	0	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AGGAATACTCTGGAAAGAAC..............	20	0	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................TGATGCTGTCGAGGACTATGT......................................................................................................................................................................................................	21	1	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..GAACGGGGAGCGGCTATTCTGC...................................................................................................................................................................................................................................	22	1	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CTCTGGAAAGAACAGCGACGC......	21	0	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...AACGGGGAGCAGCTATTCTGC...................................................................................................................................................................................................................................	21	0	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AGGAAGGAATACTCTGGAAAGA................	22	0	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................TTGATGCTGTCGAAGACTATG.......................................................................................................................................................................................................	21	0	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......GGGGAGCGGCTATTCTGCTTGGC..............................................................................................................................................................................................................................	23	1	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................AATACTCTGGAAAGAACAGC...........	20	0	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................CAGGAAGGAATACTCTGGA....................	19	0	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...AACGGGGAGCAGCTATTCTGCT..................................................................................................................................................................................................................................	22	0	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ATACTCTGGAAAGAACAG............	18	0	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TACTCCGTAAAGAATAGCGA.........	20	3	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................ATGCTCTGGAAAGAGCAGC...........	19	2	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GAATGTTCTGGAAAGAAC..............	18	2	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................AAGAATGTTCTGGAAAGAAC..............	20	3	9	0.11	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................ACTCCGTAAAGAATAGCGA.........	19	3	13	0.08	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GTGCGAGGCATATTCTTTC......................................	19	3	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................ATGTTGTCGAAGACTTTGAA.....................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0

TACTTGCCCCTCGTCGATAAGACGAACCGAGAACTACGACAGCTTCTGATACATATAAAATATCCTACTCTCAACAAATGCAAACGGACAATGCATGTGAACGTGTAATATGCCCAAGTCCCAGTTTTATTTTTGTCTTCTAACGTGATCAAACTAATATTAGCATATATATAAATTATTAGCAAGTATACAATAAAGATCCGTATAAGAAAGTCCTTCCTTATGAGACCTTTCTTGTCGCTGCGAAATAG ************************************************(((((.....(((((.((((.((.....)).)))))))))...))))).........(((((((......(((((((.......((......))......)))))))....))))))).......(((((.(((....)))))))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V116 male body	M027 male body	M047 female body	SRR060659 Argentina_testes_total	SRR060681 Argx9_testes_total	SRR060666 160_males_carcasses_total	SRR060684 140x9_0-2h_embryos_total	SRR060685 9xArg_0-2h_embryos_total
...........CGTCGATAAGACGAACCGAGA...........................................................................................................................................................................................................................	21	0	3	0.67	2	2	0	0	0	0	0	0	0
.....................................................................CTCAACAAATGCAAACGGACA.................................................................................................................................................................	21	0	2	0.50	1	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................AAAGATCCGTATAAGAAAGTCCTTCCT..............................	27	0	3	0.33	1	0	0	0	1	0	0	0	0
............GTCGATAAGACGAACCGAGAA..........................................................................................................................................................................................................................	21	0	3	0.33	1	1	0	0	0	0	0	0	0
.........CTCGTCGATAAGGCGAACCGA.............................................................................................................................................................................................................................	21	1	3	0.33	1	1	0	0	0	0	0	0	0
......................................................................................................................TCCCAGTTTTATTGTTGTGT.................................................................................................................	20	2	4	0.25	1	0	0	0	0	1	0	0	0
........................................................................................................GTACTAGGCACAAGTCCCAG...............................................................................................................................	20	3	4	0.25	1	0	0	1	0	0	0	0	0
...........CGTCGGTGAGACGAACCGAGA...........................................................................................................................................................................................................................	21	2	4	0.25	1	0	0	1	0	0	0	0	0
.............................................................................AGGCAAACGGACATTGCATC..........................................................................................................................................................	20	3	10	0.10	1	0	0	0	0	0	0	1	0
.............................................................................AGGCAAACGGACATTGCA............................................................................................................................................................	18	2	11	0.09	1	0	0	0	0	0	1	0	0
.................TCAGTCGAACCTAGAACTAC......................................................................................................................................................................................................................	20	3	12	0.08	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................................AAAATTATTAGCAGGTAT..............................................................	18	2	20	0.05	1	0	0	0	0	0	0	0	1
....................................................................................................................................TTGTCTTCTACCGTCATAA....................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_4721:1731-1981 +	dvi_22172	ATGAACGGGGA--------GCAGCTA-TTCTGCTTGGCTCTTGATGCTGTCGAAGACTATGTATATTTTATAGGATGAGAGTTGTTTACGTTTGCCTGTTACGTACACTTGCAC--------------------ATT------ATACGGGTTCAGGGTCAAAATAAA--AACAGA--------------------------AGA------TTGCACTAGTTTGATTATAATCGTATATATA-TTTAATAATCGTTCATATG-------------------------------TT----------------------------------------------------------------------------ATTTCTAGGCATATTC----------TTTCAGGAAGGAATACTCTGGAAAGAACAGCGACGCTTTATC
droMoj3	scaffold_6496:1670249-1670497 -		ACAGACGGACA--------GGG-CTATATCGACTCAGCTCGTCGTCCTGATCAAGAATATATATACTTTATGGGGTCTGCGATGATTCCTTCTGCCTGTTACATACTTTTC-ACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCTGGGTATAAAAATG--AACAGA--------------------------ATAATACATATGAGAATAA------TTCATT--------------------------ATA-------------------------------TT----------------------------------------------------------------------------GTTGCTATGCATATT---AGGAATATTTATGATAAT---A------ATGCTAATAACAATACTTCAGC
droGri2	scaffold_8789:3494-3731 -		ACGGACGGATA--------TGG-CTATATCGACTCAGCTGTTGACCCTGATCAAGAATATAGATACTTTATGGGGTCGGAGATGCTTTCTTCTGTCTGTTACATACATTTGCACAAAACCATTATACACTTTTTACTCATTTTTAATGGGCTTAGGGTATAATAATATAGTTGAA-----------------G-------T----------------AAT-CGTTTTTAATTATATATT--T-------------------T--------------C----------------------------------------------------TTTATATTTATATTTATTTATATAT----------------GTTTGTACT---------------------------------------------TATATTTATTT--A
droWil2	scf2_1100000004510:627822-628065 +		T----------------------------CGACTCGGTTGTTGATCCTGATCAAGAATATATATACTTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTTTGGCGACTTTAATATACCATT-TCACC------CTATGGGTGTATGGTATAAAAAGT----TGTA-----------------T-------A----------------AAT-TGTTTTTATATGAATCGG--A-------------------T--------------CTGTTAGATTTGTAGAAT--------------------------------------------------------ATTTGGGTTGAGTGATTT--TTAGATAGTCATTGTC----------TTTAAAAAATAAAAGCGTTGAAAAGAACAGC-----------
dp5	2:11385949-11386000 -		A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATCTTC----------TTCCAGGAGGGTGCGCTCTGGAAGGAGCAGCGACGCTTCATT
droPer2	scaffold_55:240430-240527 +		ACAGACAGACA--------GCG-GTTAATCGACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGCTTCCTTCTGGACGTTACACACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13340:9385207-9385258 -		A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATTTTC----------TTTCAAGACGGGCCCCTTTGGAAGGAGCAGCGACGTTTTATC
droBip1	scf7180000396376:77109-77274 +		ATGGACGGGCAGACAGAAATGG-CTATATCGACTTGGCTGTTGATGCTGATCAAGAATTAATATAGTTTATGGGATCGGAGATGATTCTGTCTCTTTGTTAAATACATTCACACGAATACAATACACCTTT-GTACT------CTACGAGAACAGGGTATAAAAAAA--ACCGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droKik1	scf7180000302778:559335-559415 -		ATAAATATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATT------------------------------------------------------------------------TATA----------------------------------------TTTCCACTTAGGCATATTC----------TTCCAGGAAGGACCTTTGTGGAAGGAGCAGCGCCGCTTTATC
droFic1	scf7180000453800:1249249-1249360 +		TTTGATAATAA---------------------------------ATCTGT--------TGATATATTTTAATAGTTTTT---------------------------------------CCAAAATTTCCTT-TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTGAAGGCATCTTC----------TTTCAGGACGGACCTTTGTGGAAGGAGCAGCGCCGCTTTATC
droEle1	scf7180000491008:1457822-1457873 -		A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCATCTTC----------TTTCAGGATGGACCCTTGTGGAAGGAGCAGCGCCGCTTCATC
droRho1	scf7180000779428:77449-77694 +		ACAGACGGACA--------TGG-CTATATCGACTCGGCTAGTGACCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTGGCTGTTACATACTTTTGCACGAATACAATATACCCTT-TTACT------CTACGAGTAACGGGTATAAAAATA--GCG--A--------------------------A-----------------------------------------------------------GCCCTAATGAAATGGTTCGT------------------------AAATAATACTAATAAT-AATATTATCTAAAGCTACATTCAAAAATGA----------------------------ACTAT--------------------------CTATAAA------AGCAACGGCTT--A
droBia1	scf7180000299102:1168138-1168224 -		ATAAATACTTA----------G-TTAAATT---------------------------------------------------------TCTTTTGCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCCAGGAATCTTC----------TTTCAGGACGGACCCCTGTGGAAGGAGCAGCGTCGCTTTATC
droTak1	scf7180000415876:513037-513243 +		T----------------------------CGACTCGGCTAGTGATCCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGCTTCCTTCTACCTGTTACATACTTTTGCACGAATACAATATACCCTT-TTACT------CTACGAGTAACGGGTATAAAAATA--AGGTG--------------------------A----------------A------------------------------------------------------ATGGTTCCTTCT--------TTTTAACCATAAGCAATATAATTTAAAA---------------------------------------------------------ATCCTTATCTTTAAACTTTTTTAAGGA---------------------------------A
droEug1	scf7180000409802:1240609-1240784 -		TTAAACACAGC--------TGA-AC-----------GTTACAAAGCCTAATCATTAAAAAAAATATTAAATAGCTTCCGCCA-------------------------------------------------------------CCTTAAGTGATAA---------------------------------------------------------------------------------------------------------GCCCAAGTAGCCTAGACGGT------------------------TAATATTATTAATAAATTCAAA----------------------------------------T--TTCCGTAGGTATTTTC----------TTTCAGGATGGACCCTTATGGAAGGAGCAGCGTCGCTTCATC
dm3	chr3R:8790195-8790291 +		TTGATTGATAT--------TTA-ATATAACTATTTAATTTTTGCTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGCAGGGATCTTT----------TTCCAGGATGGCCCCCTGTGGAAGGAGCAACGTCGCTTCATC
droSim2	x:17349404-17349562 -		ACGGACAGACG----------G-C-AGTTCGACTCGGCTATTGATCCTGATTAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTATCAAGGAATGTAGTATACCCTT-TCACT------CCACGAGTAACGGGTATAATTAAA--AAAAAA--------------------------AGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droSec2	scaffold_11:2858689-2858775 +		T----------------------------CTACTTGGCTATTGATACTGATCGAGAATATATATATTTTATATGGTCGGAAGCGCTTCCTTCTGCCTGTTACATACTTTTCAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	2L:22006352-22006603 -		ACAGACGGACA--------TGG-CCAAATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAACGAATCTAGTAAACCCTT-TTACT------CTACGAGTAACGGGTATAAAAAAA----CGAA--------------------------AGAAGGCGACTGAAGTGGA------TT--------------TTTGATTTTCGTTCTTGAT-------------------------------TT----------------------------------------------------------------------------TTGCCTATGCTT------TATAATTTTTACAGTAAA---TATTTTGGTA-GGACAGCGTCGATTT---
droEre2	scaffold_4820:5486872-5487075 +		ACAGACGGACA--------TGA-CCATATCGACCCGGCTTTTGATCCTGATCAAGAATATATATACTTTATATGATCGGAAAAGCTTCCTTCTGCCTGTTACATACTTTTCAACGAA----------CCTT-TTACT------CTACGAGTACCGGGTATAAATAGA----CTGTATACTAAAACAATTGTATATTGGTGA----------------A------------------------------------------------------ATTATTGCTAAATTTATAAATT----------------------------------------------------------------------------ATTTATA----------------------------------------------------------GAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ATGAACGGGGA--------GCAGCTA-TTCTGCTTGGCTCTTGATGCTGTCGAAGACTATGTATATTTTATAGGATGAGAGTTGTTTACGTTTGCCTGTTACGTACACTTGCAC--------------------ATT------ATACGGGTTCAGGGTCAAAATAAA--AACAGA--------------------------AGA------TTGCACTAGTTTGATTATAATCGTATATATA-TTTAATAATCGTTCATATG-------------------------------TT----------------------------------------------------------------------------ATTTCTAGGCATATTC----------TTTCAGGAAGGAATACTCTGGAAAGAACAGCGACGCTTTATC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................CTGGAAAGAACAGCGACGCT.....	20	3	0.67	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TATTTTATAGGATGAGAGTTGTTTA..............................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................TATAGGATGAGAGTTGTTTACG............................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................ATTTTATAGGATGAGAGTTGTT................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATACTCTGGAAAGAACAGC...........	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGAACAGCGACGCTTTATC	23	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................C----------TTTCAGGAAGGAATACTCTGGA....................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATACTCTGGAAAGAAC..............	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGAAAGAACAGCGACGC......	21	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AACGGGGA--------GCAGCTA-TTCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGGAATACTCTGGAAAGA................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................TTGATGCTGTCGAAGACTATG.........................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................AATACTCTGGAAAGAACAGC...........	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................CAGGAAGGAATACTCTGGA....................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AACGGGGA--------GCAGCTA-TTCTGCT....................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................ATACTCTGGAAAGAACAG............	18	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACAGACGGACA--------GGG-CTATATCGACTCAGCTCGTCGTCCTGATCAAGAATATATATACTTTATGGGGTCTGCGATGATTCCTTCTGCCTGTTACATACTTTTC-ACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCTGGGTATAAAAATG--AACAGA--------------------------ATAATACATATGAGAATAA------TTCATT--------------------------ATA-------------------------------TT----------------------------------------------------------------------------GTTGCTATGCATATT---AGGAATATTTATGATAAT---A------ATGCTAATAACAATACTTCAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ACGGACGGATA--------TGG-CTATATCGACTCAGCTGTTGACCCTGATCAAGAATATAGATACTTTATGGGGTCGGAGATGCTTTCTTCTGTCTGTTACATACATTTGCACAAAACCATTATACACTTTTTACTCATTTTTAATGGGCTTAGGGTATAATAATATAGTTGAA-----------------G-------T----------------AAT-CGTTTTTAATTATATATT--T-------------------T--------------C----------------------------------------------------TTTATATTTATATTTATTTATATAT----------------GTTTGTACT---------------------------------------------TATATTTATTT--A	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

T----------------------------CGACTCGGTTGTTGATCCTGATCAAGAATATATATACTTTGTGGGGTCGGAGATGCTTCCTTCTGCCTGTTACATACATTTTGGCGACTTTAATATACCATT-TCACC------CTATGGGTGTATGGTATAAAAAGT----TGTA-----------------T-------A----------------AAT-TGTTTTTATATGAATCGG--A-------------------T--------------CTGTTAGATTTGTAGAAT--------------------------------------------------------ATTTGGGTTGAGTGATTT--TTAGATAGTCATTGTC----------TTTAAAAAATAAAAGCGTTGAAAAGAACAGC-----------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................CTGATCAAGAATATATATACTTTGT...............................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	3	0
..................................................TCAAGAATATATATACTTTGTGGGG...........................................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	3	0
............................................................ATATACTTTGTGGGGTCGGAGATG..................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
...............................................................TACTTTGTGGGGTCGGAGATGCTT...............................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	2	0
..................................................................TTTGTGGGGTCGGAGATGCTTC..............................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0
..........................................................................GTCGGAGATGCTTCCTTCTGCCTGT...................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
......................................................................................................................TTAATATACCATT-TCACC------CTATGGGTGTA............................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0
..........................................................................................TCTGCCTGTTACATACATTTTGG.....................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0
..................................................................TTTGTGGGGTCGGAGATGCTTCCTT...........................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
....................................................AAGAATATATATACTTTGTGG.............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
....................................GTTGTTGATCCTGATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
......................................................................TGGGGTCGGAGATGCTTCCTTCT.........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0

dp5

A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATCTTC----------TTCCAGGAGGGTGCGCTCTGGAAGGAGCAGCGACGCTTCATT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................ATCTTC----------TTCCAGGAGGGTGCGCTCTGGA....................	28	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................ATCTTC----------TTCCAGGAGGGTGCGCTCTGG.....................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

ACAGACAGACA--------GCG-GTTAATCGACTCGGCTATTGATGCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGCTTCCTTCTGGACGTTACACACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................ATATACTTTATGGGGTCGG.......................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
...........................................................................TCGGAAACGCTTCCTTCTG........................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
........................TTAATCGACTCGGCTATTG...........................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.........................................TGATGCTGATCAAGAATA...........................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0

droAna3

A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTATTTTC----------TTTCAAGACGGGCCCCTTTGGAAGGAGCAGCGACGTTTTATC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

ATGGACGGGCAGACAGAAATGG-CTATATCGACTTGGCTGTTGATGCTGATCAAGAATTAATATAGTTTATGGGATCGGAGATGATTCTGTCTCTTTGTTAAATACATTCACACGAATACAATACACCTTT-GTACT------CTACGAGAACAGGGTATAAAAAAA--ACCGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATAAATATTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATT------------------------------------------------------------------------TATA----------------------------------------TTTCCACTTAGGCATATTC----------TTCCAGGAAGGACCTTTGTGGAAGGAGCAGCGCCGCTTTATC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTGATAATAA---------------------------------ATCTGT--------TGATATATTTTAATAGTTTTT---------------------------------------CCAAAATTTCCTT-TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCTGAAGGCATCTTC----------TTTCAGGACGGACCTTTGTGGAAGGAGCAGCGCCGCTTTATC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCATCTTC----------TTTCAGGATGGACCCTTGTGGAAGGAGCAGCGCCGCTTCATC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACAGACGGACA--------TGG-CTATATCGACTCGGCTAGTGACCCTGATCAAGAATATATATACTTTATAGGGTCGGAAACGCTTCCTTCTGGCTGTTACATACTTTTGCACGAATACAATATACCCTT-TTACT------CTACGAGTAACGGGTATAAAAATA--GCG--A--------------------------A-----------------------------------------------------------GCCCTAATGAAATGGTTCGT------------------------AAATAATACTAATAAT-AATATTATCTAAAGCTACATTCAAAAATGA----------------------------ACTAT--------------------------CTATAAA------AGCAACGGCTT--A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATAAATACTTA----------G-TTAAATT---------------------------------------------------------TCTTTTGCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCCAGGAATCTTC----------TTTCAGGACGGACCCCTGTGGAAGGAGCAGCGTCGCTTTATC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

T----------------------------CGACTCGGCTAGTGATCCTGATCAAGAATATATATACTTTATGGGGTCGGAAACGCTTCCTTCTACCTGTTACATACTTTTGCACGAATACAATATACCCTT-TTACT------CTACGAGTAACGGGTATAAAAATA--AGGTG--------------------------A----------------A------------------------------------------------------ATGGTTCCTTCT--------TTTTAACCATAAGCAATATAATTTAAAA---------------------------------------------------------ATCCTTATCTTTAAACTTTTTTAAGGA---------------------------------A	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTAAACACAGC--------TGA-AC-----------GTTACAAAGCCTAATCATTAAAAAAAATATTAAATAGCTTCCGCCA-------------------------------------------------------------CCTTAAGTGATAA---------------------------------------------------------------------------------------------------------GCCCAAGTAGCCTAGACGGT------------------------TAATATTATTAATAAATTCAAA----------------------------------------T--TTCCGTAGGTATTTTC----------TTTCAGGATGGACCCTTATGGAAGGAGCAGCGTCGCTTCATC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTGATTGATAT--------TTA-ATATAACTATTTAATTTTTGCTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGCAGGGATCTTT----------TTCCAGGATGGCCCCCTGTGGAAGGAGCAACGTCGCTTCATC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAGGAGCAACGTCGCTTCATC	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGGATGGCCCCCTGTGGAAGGAGC..............	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGATGGCCCCCTGTGGAAGGAGC..............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTGTGGAAGGAGCAACGTCG.......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCCCTGTGGAAGGAGCAACGTCGC......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGGAGCAACGTCGCTTC...	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTGTGGAAGGAGCAACGTC........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCCCCTGTGGAAGGAGC..............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSim2

ACGGACAGACG----------G-C-AGTTCGACTCGGCTATTGATCCTGATTAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTATCAAGGAATGTAGTATACCCTT-TCACT------CCACGAGTAACGGGTATAATTAAA--AAAAAA--------------------------AGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................GAATATATATACTTTATATGGTCGGA......................................................................................................................................................................................................................................................................................................................................................................	26	20	9.75	195	0	0	0	0	0	0	0	195	0	0	0	0	0	0	0	0	0
.......................................ATTGATCCTGATTAAGAATATATA.......................................................................................................................................................................................................................................................................................................................................................................................	24	7	6.00	42	0	0	0	0	0	0	8	4	15	15	0	0	0	0	0	0	0
............................................................ATATACTTTATATGGTCGGAAACGC.................................................................................................................................................................................................................................................................................................................................................................	25	20	4.75	95	0	0	0	0	0	0	95	0	0	0	0	0	0	0	0	0	0
...............................................................................................CTGTTACATACTTATCAAGGAATGTA.............................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................ATTGATCCTGATTAAGAATATATATACT...................................................................................................................................................................................................................................................................................................................................................................................	28	3	2.00	6	0	0	0	0	0	0	1	1	3	1	0	0	0	0	0	0	0
....................................................................TATATGGTCGGAAACGCTTCCTTC..........................................................................................................................................................................................................................................................................................................................................................	24	20	1.30	26	0	0	0	0	0	0	0	0	1	0	25	0	0	0	0	0	0
..................................................................................................................................................CGAGTAACGGGTATAATTAAA--AAAA.........................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................TCGACTCGGCTATTGATCCTGATTAAGA..............................................................................................................................................................................................................................................................................................................................................................................................	28	5	1.00	5	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0
...........................................................TATATACTTTATATGGTCGGAAACGCT................................................................................................................................................................................................................................................................................................................................................................	27	20	0.95	19	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0
.......................................ATTGATCCTGATTAAGAATAT..........................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.90	9	0	0	0	0	0	0	5	1	2	1	0	0	0	0	0	0	0
................................CTCGGCTATTGATCCTGATTAAGAA.............................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.67	4	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0
............................TCGACTCGGCTATTGATCCTGATT..................................................................................................................................................................................................................................................................................................................................................................................................	24	8	0.63	5	0	0	2	0	0	0	0	3	0	0	0	0	0	0	0	0	0
.......................................ATTGATCCTGATTAAGAATATAT........................................................................................................................................................................................................................................................................................................................................................................................	23	8	0.50	4	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0
.....................................................................................TTCCTTCTGCCTGTTACATACTTATC.......................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................TCGGCTATTGATCCTGATTAAGAA.............................................................................................................................................................................................................................................................................................................................................................................................	24	7	0.43	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
............................TCGACTCGGCTATTGATCCTGATTAAGAA.............................................................................................................................................................................................................................................................................................................................................................................................	29	5	0.40	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.........................................TGATCCTGATTAAGAATATATATACT...................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................TTCCTTCTGCCTGTTACATACTTA.........................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................ATTGATCCTGATTAAGA..............................................................................................................................................................................................................................................................................................................................................................................................	17	13	0.31	4	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0
.........................................................TATATATACTTTATATGGTCGGAAACG..................................................................................................................................................................................................................................................................................................................................................................	27	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0
......................................................................TATGGTCGGAAACGCTTCCTTCTGCC......................................................................................................................................................................................................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
..................................CGGCTATTGATCCTGATTAAGAATA...........................................................................................................................................................................................................................................................................................................................................................................................	25	8	0.25	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
.........................................................TATATATACTTTATATGGTCGGAAAC...................................................................................................................................................................................................................................................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0
..........................................................ATATATACTTTATATGGTCGGAAAC...................................................................................................................................................................................................................................................................................................................................................................	25	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0
.......................................ATTGATCCTGATTAAGAATATA.........................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.22	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
............................TCGACTCGGCTATTGATCCTGATTAAGAAT............................................................................................................................................................................................................................................................................................................................................................................................	30	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................GCTATTGATCCTGATTAAGAATATATA.......................................................................................................................................................................................................................................................................................................................................................................................	27	5	0.20	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................ATTGATCCTGATTAAGAATATATATACTA..................................................................................................................................................................................................................................................................................................................................................................................	29	5	0.20	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................TCGACTCGGCTATTGATCCTGATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................TATTGATCCTGATTAAGAATATATA.......................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.17	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................TATATGGTCGGAAACGCTTCCTTCTGC.......................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................ATATATACTTTATATGGTCGGAAACGCT................................................................................................................................................................................................................................................................................................................................................................	28	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
....................................................................TATATGGTCGGAAACGCTTCCT............................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................................................TACTTTATATGGTCGGAAACGCTTC..............................................................................................................................................................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0
......................................................................TATGGTCGGAAACGCTTCC.............................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................ATTGATCCTGATTAAGAATATATAT......................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................CGGCTATTGATCCTGATTAAGAATAT..........................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................TCGGCTATTGATCCTGATTAAGAATA...........................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................TCGGCTATTGATCCTGATTAAGAAT............................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................TCGGCTATTGATCCTGATTAAG...............................................................................................................................................................................................................................................................................................................................................................................................	22	8	0.13	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................TCGACTCGGCTATTGATCCTGATTAA................................................................................................................................................................................................................................................................................................................................................................................................	26	8	0.13	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................TATGGTCGGAAACGCTTCCTTCTGC.......................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TTATATGGTCGGAAACGCTTCCTTC..........................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
........................................................ATATATATACTTTATATGGTCGGAAACGC.................................................................................................................................................................................................................................................................................................................................................................	29	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..................................................................TTTATATGGTCGGAAACGC.................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................ATTGATCCTGATTAAGAATATATT.......................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................ATTGATCCTGATTAAGAATA...........................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................TCGGCTATTGATCCTGATTA.................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................TATTGATCCTGATTAAGAAT............................................................................................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................TATTGATCCTGATTAAGA..............................................................................................................................................................................................................................................................................................................................................................................................	18	12	0.08	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................TATTGATCCTGATTAAGAA.............................................................................................................................................................................................................................................................................................................................................................................................	19	12	0.08	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................ATTGATCCTGATTAAGAATATATAG......................................................................................................................................................................................................................................................................................................................................................................................	25	14	0.07	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................AGTTCGACTCGGCTATTGATC........................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................GCTATTGATCCTGATT..................................................................................................................................................................................................................................................................................................................................................................................................	16	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................ATATATATACTTTATATGGTCGGAA.....................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ACGAGTAACGGGTATAATTA.................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................TACTTTATATGGTCGGAAACGCTTCC.............................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................TACTTTATATGGTCGGAAACGCTTCCTT...........................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................TATACTTTATATGGTCGGAAACGCTT...............................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................GAATATATATACTTTATATGGTC.........................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................CTTCCTTCTGCCTGTT..................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................TCTGCCTGTTACATACT...........................................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................TTTATATGGTCGGAAAC...................................................................................................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................TTCGACTCGGCTATTG...........................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................ATATATACTTTATATGGTCGGAAACGC.................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................ATATATATACTTTATATGGTCGGAAA....................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................TCGACTCGGCTATTGATCCTGA....................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................TACTTTATATGGTCGGAAACGCTTCCTTC..........................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................ATATACTTTATATGGTCGGAAACGCA................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................CTTCTGCCTGTTACATACT...........................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................TACTTTATATGGTCGGAAACGCTT...............................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ACGAGTAACGGGTATAA....................................................................................................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................TATATATACTTTATATGGTCGGAAACGCT................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................TATGGTCGGAAACGCTTCCTTCTGG.......................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................ATATATATACTTTATATGGTCGGAAACG..................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................CGACTCGGCTATTGATCCTGA....................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................AATATATATACTTTATATGGTCGGA......................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................ATATATACTTTATATGGTCGGAAA....................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................CGGAAACGCTTCCTTCTGCCTGTTACATACT...........................................................................................................................................................................................................................................................................................................................................	31	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................TTTATATGGTCGGAAACGCTTCCTT...........................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................TATACTTTATATGGTCGGAAA....................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................TACTTTATATGGTCGGAAACGC.................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................GACTCGGCTATTGATCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

T----------------------------CTACTTGGCTATTGATACTGATCGAGAATATATATATTTTATATGGTCGGAAGCGCTTCCTTCTGCCTGTTACATACTTTTCAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ACAGACGGACA--------TGG-CCAAATCGACTCGGCTATTGATCCTGATCAAGAATATATATACTTTATATGGTCGGAAACGCTTCCTTCTGCCTGTTACATACTTTTCAACGAATCTAGTAAACCCTT-TTACT------CTACGAGTAACGGGTATAAAAAAA----CGAA--------------------------AGAAGGCGACTGAAGTGGA------TT--------------TTTGATTTTCGTTCTTGAT-------------------------------TT----------------------------------------------------------------------------TTGCCTATGCTT------TATAATTTTTACAGTAAA---TATTTTGGTA-GGACAGCGTCGATTT---	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................G-CCAAATCGACTCGGCTATTGATCC.......................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0
.....................................................................................................CATACTTTTCAACGAATCTAGTAAACCC.....................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................TCAACGAATCTAGTAAACCC.....................................................................................................................................................................................................................................................................................................................	20	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................TTTCAACGAATCTAGTAAACCC.....................................................................................................................................................................................................................................................................................................................	22	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................ATCTAGTAAACCCTT-TTACT------.......................................................................................................................................................................................................................................................................................................	20	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................CGCTTCCTTCTGCCTGTTACA...............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.........................AAATCGACTCGGCTATTGATCCTGAT...................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................ATACTTTATATGGTCGGAAACGCT................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

ACAGACGGACA--------TGA-CCATATCGACCCGGCTTTTGATCCTGATCAAGAATATATATACTTTATATGATCGGAAAAGCTTCCTTCTGCCTGTTACATACTTTTCAACGAA----------CCTT-TTACT------CTACGAGTACCGGGTATAAATAGA----CTGTATACTAAAACAATTGTATATTGGTGA----------------A------------------------------------------------------ATTATTGCTAAATTTATAAATT----------------------------------------------------------------------------ATTTATA----------------------------------------------------------GAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_22172

scaffold_4721:1781-1931 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.3	-17.0	-16.9