dvi_22108

exon [dvir_GLEANR_15179:1]; CDS [Dvir\GJ14912-cds]; exon [dvir_GLEANR_15179:2]; CDS [Dvir\GJ14912-cds]; intron [Dvir\GJ14912-in]

TAGGGTAATACTTAGACGTGCTCGCACACGAATCGCAGAACCGGACGTTCCATTTAGGGATGTATGAATAGCGTCTGTTAATTTACTTATTGATTGTTGGAGAATGTGAGACGTCAAACAGTTGCTCCATCAGTAACCGCGTGGGATGACACAGTGTCTTCTCGA ************************************************.....................(((((................................)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060666 160_males_carcasses_total	V053 head
......................................................................................................................................ACCCGCGTGGGAAGACACAGA..........	21	3	4	0.25	1	1	0
...............................................................................................................................................GGATGACTCAATGTCTGCT...	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_4534:156-320 +	dvi_22108	ATCCCATTATGAATCTGCACG-------AGCGTGTGCTTAGCGTCTTGGCCTGCAAGGTAAATC--------------------------------------------------------------------------------------------------------------------CCTACA-----TACT---------------TA----TCGCAGAC--------------------------------------------AATTAAAT-GAATAA-----------CTAACAACCTC--------------------------TTAC---ACTCTGCAGTTTGTCAACGAGGTAGTCATTGGCGCACCCTACTGTGTCACAGAAGAG-----------------CT
droMoj3	scaffold_6500:15231555-15231724 +		ATCCCATTATGAATCTGCATG-------AGCGCGTGCTTAGCGTTTTGGCCTGCAAAGTAAAT----------------------------------------------------------------A----------GTGCAA---------A---------------------------------------------------------------------------------------------------------------------------GAGGAC---AAGCTCATGT--------CTCGTGTCTGTACTAATATCTGCTTTCTCTG---CATTCGCAGTTTGTCAACGAGGTGGTCATTGGTGCACCCTACTGTGTCACTGAGGAG-----------------CT
droGri2	scaffold_15252:4049485-4049662 +		ATCCCATTATGAATCTGCATG-------AGCGTGTGCTCAGCGTTCTGGCCTGCAAGGTTAGCTA-----------------------------------------------------------------------------------------------------------------TTCCCACAACGTTTACTTA-TCAGAGGCGTCTGTTTAGTAATCG--------------------------------------------------------ATTAA-----------TT--------CTTTTGATT----------------G----T---ATTATTCAGTTTGTCAACGAGGTTGTTATTGGTGCACCCTATTGCGTCACAGAGGAT-----------------CT
droWil2	scf2_1100000004521:12159141-12159236 -		TAATCGTAATGTGCTT----------------TGTGGTTGTTGTTT------------------------------------------------------------------------AATTTAACAA-------------TTC---------TAGGCA----------------------------------------------------------------------------------------------------------------------AAACTTC----TA---------------------------------------------------------------------ATCACCATGTAACCTTCACTTTGTATTCTTAAAAAA-----------------GA
dp5	4_group4:4128825-4129032 -		TGTCAAACGTAA-TCTCTGAT-------ATTTTGTCTTCAATTACA------------------------------------------------------------------------AATATACATATAT----------CCT---------AGTGCAAGTTCTTGTCCGTTAACGCTACTCATAATGTTTTATGT-TCA---ATGTTTATTTAGCTCTAGATTATAATATATTTATGTATGTACATGGCCAAAAAGTAATCCAAAAAAATGAAA-G------------------------------------------------------------------------------------------------------AATATTTATAAAGAATTTGTTGTCGATTATTTAA
droPer2	scaffold_10:3171030-3171237 -		TATCAAACGTAA-TCTCTGAT-------ATTTTGTCTTCAATTACA------------------------------------------------------------------------AATATACATATAT----------CCT---------AGTGCAAGTTCTTGTCCGTTAACGCTACTCATAATGTTTTATGT-TCA---ATGTTTATTTAGCTCTAGATTATAATATATTTATGTATGTACATGGCCAAAAAGTAATCCAAAAAAATGAAA-G------------------------------------------------------------------------------------------------------AATATTTATAAAGAATTTGTTGTCGATTATTTAA
droAna3	scaffold_12916:10858598-10858758 +		ACCCAATTATGAATCTTCACG-------AGCGCGTTCTTAGCGTCTTGGCATGCAAGGTACTTATTCCAT--------------------------------------------------------------------------ACTTTAAC--------------------------------------------------------------------------------------------------------------------CTTTAAAA-GAGTAC-----------CCTTTATCCAT--------------------G----TATTC---TATCTACAGTTTGTCAACGAGGTTGTGATTGGTGCGCCCTATTGCGTGACAGAGGAG-----------------CT
droBip1	scf7180000396572:521423-521587 +		ACCCAATTATGAATCTTCACG-------AACGCGTTCTCAGTGTTTTAGCGTGCAAGGTACGTACATAG------------------------------------------------------------CT----------CTTATTATATC---------CCTA-----------------------------------------------------------------------------------------------------------AACC-GAATAA-----------CTTATCTTATC------------------------TTATTT---TATCTACAGTTTGTTAACGAGGTTGTGATTGGTGCTCCTTATTGCGTGACTGAGGAA-----------------CT
droKik1	scf7180000302468:1391718-1391904 +		ATCCGATTATGAACCTGCACG-------AGCGCGTACTCAGCGTGCTGGCCTGCAAGGTAAGCTAACCT-----------AG-----------------------------------------------CTAAGGATAGTGGA-----------------------------------------------------------------ATGA----GCTGAAA-GTAA--------------ATCCATTTTCAATGA----------------------------TAATCCC------A-------------------ATCCCAAT-----TCTT---TTTTTCCAGTTCGTCAACGAGGTTGTGATTGGTGCACCCTATTGCGTCACCGAGGAG-----------------CT
droFic1	scf7180000453925:797964-798111 -		TATCAAATGTAA-TCTCCGAT-------ACTTTGTCCTTATTTATT------------------------------------------------------------------------AACGCATATG-------------CTA---------AGTGCAAGTTCA----------------------AGTTTTATGTTTCA---ATGTTTAA----TCTTAGACT-AA--------------ATACAAGGCCAAAAA----------------------------TATTGC-----------------------------------------------AAACTCCAATTTATCATTT-TCTGGTA--------------------------------------------TTTGA
droEle1	scf7180000491338:802471-802624 +		ATCCAATTATGAATCTGCACG-------AGCGTGTGCTCAGCGTTTTGGCCTGCAAGGTGAGATTTGAGT--------------------------------------------------------------------------GCTAAATCC---------A------------------------------------------------------------------------------------------TA-----------------AAGT-GTGAAT-----------CTTAAAAC-------------------------------CC---TTCCCCTAGTTTGTCAATGAGGTTGTGATTGGGGCTCCCTACTGTGTCACCGAGGAG-----------------CT
droRho1	scf7180000777955:24535-24693 +		ACCCAATTATGAATCTGCATG-------AGCGCGTGCTGAGTGTTTTGGCCTGCAAGGTGAGATTGCAGTG--------------------------------------------------------------------------GTGGATCC---------A------------------------------------------------------------------------------------------AA-----------------AAGT-GTGCAC-----------CGTTTAAC-------------------GCC-------TGTT---TTTCCGCAGTTTGTCAATGAGGTTGTGATTGGAGCTCCCTACTGCGTTACCGAAGAG-----------------TT
droBia1	scf7180000302408:3157606-3157750 -		TATCAAATGTA-ATCTCCGAT-------ACTTTGTCCTTATTTATT------------------------------------------------------------------------AATGCAATTA-------------CTT---------AGTGCAA---------------------------AGTTTTATGTTTCG---ATGTTTAA----TCCTAGACTTAA--------------ATACATGGCCAAAAA----------------------------TAATGC-----------------------------------------------AAACTCCAATTAGTCTGTAGTTTTATTGTTGC--------------------------------------------
droTak1	scf7180000415287:168691-168851 +		ATCCCATTATGAATCTGCACG-------AGCGCGTCCTCAGCGTTTTGGCCTGCAAGGTGGGTTAAAAAAATAC---C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------TTTTAAATGGGTTTTC----TCCT--------------------------AACACT----CTATCTT---CTTCCCCAGTTTGTCAACGAGGTGGTGATTGGGGCTCCCTACTGCGTAACCGAGGAG-----------------CT
droEug1	scf7180000409554:186628-186812 -		TACTAATTGTATATATTTACAGCAATGTAACGCAAGTAGAATGTCTTGGCCAGGAAATGG--CTG----T-------TTTTATCAAAAGAAATCTCCGATACTTTGTCCTTATTTATTAATGCATAAA-------------CTA---------AGTGCAAGTTCA----------------------AGTTTTATGTTTCA---ATGTTTAA----TCTTAGACTTAA--------------ATACATGGCCAAAAA----------------------------TACTGC---------------------------------------------------------------------------------------------------------------------------
dm3	chr2L:13209796-13209960 +		ATCCCATTATGAATCTGCACG-------AGCGCGTGCTCAGTGTTTTGGCCTGCAAGGTAGGATTGCAATAGATTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------TTTTTAAA-TATTATC----TCAT--TTT---------------------AAAACTTC-----TTTT---TTCCCCCAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCTACTGTGTCACTGAAGAG-----------------CT
droSim2	2l:12830325-12830484 +	dsi_11944	ATCCCATTATGAATCTGCACG-------AGCGCGTGCTCAGTGTTTTGGCCTGCAAGGTAGGATTGCAATCGGT---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------TTTTAAAG-TAATATC----TCAT------A-------------------AACACTTG-----TCTT---TTCCCCCAGTTTGTCAATGAGGTAGTAATTGGAGCTCCCTACTGCGTCACCGAAGAG-----------------CT
droSec2	scaffold_16:1364253-1364414 +		ATCCCATTATGAATCTGCACG-------AGCGCGTGCTCAGTGTTTTGGCCTGCAAGGTAGGATTGCATTT--C---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------TTTTAAAA-TATTATCATTATCAT------T-------------------AACACTTG-----TTTT---TTCCCCCAGTTTGTCAATGAGGTAGTAATTGGAGCTCCCTACTGCGTCACCGAAGAG-----------------CT
droYak3	2L:9633514-9633674 +		ATCCCATTATGAATCTGCACG-------AGCGCGTGCTTAGCGTTTTGGCCTGCAAGGTAAGATTGCAGTTGAC---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------TTTTAAAA-GGTTATC----TCAA--------TCGAT--------------------T----TTTTCCAATTTCCCCAGTTTGTCAATGAGGTGGTCATTGGAGCTCCCTACTGCGTTACCGAAGAG-----------------CT
droEre2	scaffold_4929:12228508-12228640 -		TATCAAATGTAA-TCTCTGAT-------ACTTTGTCCCTATTTATT------------------------------------------------------------------------AATGCATATACAA----------CAA---------AGTGCAAGTTCA----------------------AGTTTTATGTTTCA---ATGATTTA----TCTTAGACTTAA--------------ATACATGGCCAAATA----------------------------TATTGC-----------------------------------------------AAATTC-----------------------------------------------CAAA-----------------TA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ATCCCATTATGAATCTGCACG-------AGCGTGTGCTTAGCGTCTTGGCCTGCAAGGTAAATC--------------------------------------------------------------------------------------------------------------------CCTACA-----TACT---------------TA----TCGCAGAC--------------------------------------------AATTAAAT-GAATAA-----------CTAACAACCTC--------------------------TTAC---ACTCTGCAGTTTGTCAACGAGGTAGTCATTGGCGCACCCTACTGTGTCACAGAAGAG-----------------CT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................CG-------AGCGTGTGCTTAGCGTCTTGGCC...........................................................................................................................................................................................................................................................................................................................................................................	25	3	1.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................GTGCTTAGCGTCTTGGCCT..........................................................................................................................................................................................................................................................................................................................................................................	19	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................GCGTGTGCTTAGCGTCTTGGCCTGC........................................................................................................................................................................................................................................................................................................................................................................	25	3	0.67	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CGTGTGCTTAGCGTCTTGG.............................................................................................................................................................................................................................................................................................................................................................................	19	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTATGAATCTGCACG-------AGCGTG............................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CACG-------AGCGTGTGCTTAGCGTCTT...............................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CGTGTGCTTAGCGTCTTGGC............................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..................................TGCTTAGCGTCTTGGCCT..........................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GAATCTGCACG-------AGCGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GTCATTGGCGCACCCTACTGTGTCACA.........................	27	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TTTGTCAACGAGGTAGTCATTGGCGCACCC.....................................	30	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TAGTCATTGGCGCACCCTACTG................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GTGTGCTTAGCGTCTTGGCCTGC........................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................ACCCTACTGTGTCACAGAAGAG-----------------CT	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GCGTGTGCTTAGCGTCTTGGCCT..........................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................GTTTGTCAACGAGGTAGTC.................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........AATCTGCACG-------AGCGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CATTATGAATCTGCACG-------AGCG..............................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................AGGTAGTCATTGGCGCAC.......................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TATGAATCTGCACG-------AGCGTGTGCTTT......................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CT---------------TA----TCGCAGAC--------------------------------------------AATTAAA...........................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TAGCGTCTTGGCCTGCAAGT....................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

ATCCCATTATGAATCTGCATG-------AGCGCGTGCTTAGCGTTTTGGCCTGCAAAGTAAAT----------------------------------------------------------------A----------GTGCAA---------A---------------------------------------------------------------------------------------------------------------------------GAGGAC---AAGCTCATGT--------CTCGTGTCTGTACTAATATCTGCTTTCTCTG---CATTCGCAGTTTGTCAACGAGGTGGTCATTGGTGCACCCTACTGTGTCACTGAGGAG-----------------CT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................GTCAACGAGGTGGTCATTGGT...........................................	21	1	2.00	2	1	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................TCAACGAGGTGGTCATTGGT...........................................	20	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................CAACGAGGTGGTCATTGGT...........................................	19	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................CCTACTGTGTCACTGAGGAG-----------------..	20	1	1.00	1	0	0	0	0	0	1
.........................................................GTAAAT----------------------------------------------------------------A----------GTGCAA---------A---------------------------------------------------------------------------------------------------------------------------GAGGAC---AAGCTCAT........................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................ACCCTACTGTGTCACTGAGGAG-----------------C.	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CCTACTGTGTCACTGAGG.....................	18	1	1.00	1	0	0	0	1	0	0
.TCCCATTATGAATCTGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACGAGGTGGTCATTGGTGCA........................................	20	1	1.00	1	1	0	0	0	0	0

droGri2

ATCCCATTATGAATCTGCATG-------AGCGTGTGCTCAGCGTTCTGGCCTGCAAGGTTAGCTA-----------------------------------------------------------------------------------------------------------------TTCCCACAACGTTTACTTA-TCAGAGGCGTCTGTTTAGTAATCG--------------------------------------------------------ATTAA-----------TT--------CTTTTGATT----------------G----T---ATTATTCAGTTTGTCAACGAGGTTGTTATTGGTGCACCCTATTGCGTCACAGAGGAT-----------------CT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................CGTGTGCTCAGCGTTCTGGCC...........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................ATTGCGTCACAGAGGAT-----------------CT	19	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................................................................................CTATTGCGTCACAGAGGAT-----------------..	19	1	1.00	1	0	1
.................................................................................................................................................................................................................................................................................................................................................................AACGAGGTTGTTATTGGTGCAC.......................................	22	1	1.00	1	1	0
........ATGAATCTGCATG-------AGCGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
......TTATGAATCTGCATG-------AGCGTGTGCT........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1
..................................................................................................................................................................................................................................................................................................................................................................ACGAGGTTGTTATTGGTGCACC......................................	22	1	1.00	1	1	0

droWil2

TAATCGTAATGTGCTT----------------TGTGGTTGTTGTTT------------------------------------------------------------------------AATTTAACAA-------------TTC---------TAGGCA----------------------------------------------------------------------------------------------------------------------AAACTTC----TA---------------------------------------------------------------------ATCACCATGTAACCTTCACTTTGTATTCTTAAAAAA-----------------GA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......TAATGTGCTT----------------TGTGGTTGT.....................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
.....GTAATGTGCTT----------------TGTGGTTGT.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................CACCATGTAACCTTCACTTTG................................	21	1	1.00	1	0	1	0	0	0
...............................................................................................................................A-------------TTC---------TAGGCA----------------------------------------------------------------------------------------------------------------------AAACTTC----TA---------------------------------------------------------------------AT.....................................................	21	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TCACCATGTAACCTTCACTTT.................................	21	1	1.00	1	0	1	0	0	0
...............T----------------TGTGGTTGTTGTTT------------------------------------------------------------------------AATTT...................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
...............T----------------TGTGGTTGTTGTTT------------------------------------------------------------------------AATTTA..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
..............................................................................................................................AA-------------TTC---------TAGGCA----------------------------------------------------------------------------------------------------------------------AAACTTC----TA---------------------------------------------------------------------AT.....................................................	22	1	1.00	1	0	1	0	0	0
..........GTGCTT----------------TGTGGTTGTTGTTT------------------------------------------------------------------------AAT.....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
.........TGTGCTT----------------TGTGGTTGTTGTT.................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
........ATGTGCTT----------------TGTGGTTGTTGTT.................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.......AATGTGCTT----------------TGTGGTTGT.....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0

dp5

TGTCAAACGTAA-TCTCTGAT-------ATTTTGTCTTCAATTACA------------------------------------------------------------------------AATATACATATAT----------CCT---------AGTGCAAGTTCTTGTCCGTTAACGCTACTCATAATGTTTTATGT-TCA---ATGTTTATTTAGCTCTAGATTATAATATATTTATGTATGTACATGGCCAAAAAGTAATCCAAAAAAATGAAA-G------------------------------------------------------------------------------------------------------AATATTTATAAAGAATTTGTTGTCGATTATTTAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................................TATTTATGTATGTACATGGCC..................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................AAGTTCTTGTCCGTTAACGCTACTC.......................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................TGTCTTCAATTACA------------------------------------------------------------------------AATATACATATAT----------C................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................T-TCA---ATGTTTATTTAGCTCTAG................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................ATATTTATGTATGTACATGGCC..................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AATCCAAAAAAATGAAA-G------------------------------------------------------------------------------------------------------AAT...............................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................CAATTACA------------------------------------------------------------------------AATATACATATAT----------CC...............................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................TTATGT-TCA---ATGTTTATTTAG......................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................T-TCA---ATGTTTATTTAGCTCTA.................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0

droPer2

TATCAAACGTAA-TCTCTGAT-------ATTTTGTCTTCAATTACA------------------------------------------------------------------------AATATACATATAT----------CCT---------AGTGCAAGTTCTTGTCCGTTAACGCTACTCATAATGTTTTATGT-TCA---ATGTTTATTTAGCTCTAGATTATAATATATTTATGTATGTACATGGCCAAAAAGTAATCCAAAAAAATGAAA-G------------------------------------------------------------------------------------------------------AATATTTATAAAGAATTTGTTGTCGATTATTTAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...CAAACGTAA-TCTCTGAT-------ATTTTGT...........................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	4	0	0	0	0	0
...CAAACGTAA-TCTCTGAT-------ATTTTGTCTT........................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	4	0	0	0	0	0
..........................................................................................................................TACATATAT----------CCT---------AGTGCAAG.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...CAAACGTAA-TCTCTGAT-------A.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................ATGT-TCA---ATGTTTATTTAGCTCTAGATT.............................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................GTGCAAGTTCTTGTCCGTTAACGCT...........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
......ACGTAA-TCTCTGAT-------ATTTTGTCTT........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................GATTATAATATATTTATGTATG...........................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................TACATATAT----------CCT---------AGTGCAAGTTCTTGTCC....................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................ATAT----------CCT---------AGTGCAAGTTCTTGTCC....................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droAna3

ACCCAATTATGAATCTTCACG-------AGCGCGTTCTTAGCGTCTTGGCATGCAAGGTACTTATTCCAT--------------------------------------------------------------------------ACTTTAAC--------------------------------------------------------------------------------------------------------------------CTTTAAAA-GAGTAC-----------CCTTTATCCAT--------------------G----TATTC---TATCTACAGTTTGTCAACGAGGTTGTGATTGGTGCGCCCTATTGCGTGACAGAGGAG-----------------CT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................CGTTCTTAGCGTCTTGGC............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GTTGTGATTGGTGCGCCCTATTGC...............................	24	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................ATTGCGTGACAGAGGAG-----------------CT	19	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................GTTTGTCAACGAGGTTGT..................................................	18	1	1.00	1	0	0	0	0	0	1
............ATCTTCACG-------AGCGCGTTCT........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droBip1

ACCCAATTATGAATCTTCACG-------AACGCGTTCTCAGTGTTTTAGCGTGCAAGGTACGTACATAG------------------------------------------------------------CT----------CTTATTATATC---------CCTA-----------------------------------------------------------------------------------------------------------AACC-GAATAA-----------CTTATCTTATC------------------------TTATTT---TATCTACAGTTTGTTAACGAGGTTGTGATTGGTGCTCCTTATTGCGTGACTGAGGAA-----------------CT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATCCGATTATGAACCTGCACG-------AGCGCGTACTCAGCGTGCTGGCCTGCAAGGTAAGCTAACCT-----------AG-----------------------------------------------CTAAGGATAGTGGA-----------------------------------------------------------------ATGA----GCTGAAA-GTAA--------------ATCCATTTTCAATGA----------------------------TAATCCC------A-------------------ATCCCAAT-----TCTT---TTTTTCCAGTTCGTCAACGAGGTTGTGATTGGTGCACCCTATTGCGTCACCGAGGAG-----------------CT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TATCAAATGTAA-TCTCCGAT-------ACTTTGTCCTTATTTATT------------------------------------------------------------------------AACGCATATG-------------CTA---------AGTGCAAGTTCA----------------------AGTTTTATGTTTCA---ATGTTTAA----TCTTAGACT-AA--------------ATACAAGGCCAAAAA----------------------------TATTGC-----------------------------------------------AAACTCCAATTTATCATTT-TCTGGTA--------------------------------------------TTTGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATCCAATTATGAATCTGCACG-------AGCGTGTGCTCAGCGTTTTGGCCTGCAAGGTGAGATTTGAGT--------------------------------------------------------------------------GCTAAATCC---------A------------------------------------------------------------------------------------------TA-----------------AAGT-GTGAAT-----------CTTAAAAC-------------------------------CC---TTCCCCTAGTTTGTCAATGAGGTTGTGATTGGGGCTCCCTACTGTGTCACCGAGGAG-----------------CT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACCCAATTATGAATCTGCATG-------AGCGCGTGCTGAGTGTTTTGGCCTGCAAGGTGAGATTGCAGTG--------------------------------------------------------------------------GTGGATCC---------A------------------------------------------------------------------------------------------AA-----------------AAGT-GTGCAC-----------CGTTTAAC-------------------GCC-------TGTT---TTTCCGCAGTTTGTCAATGAGGTTGTGATTGGAGCTCCCTACTGCGTTACCGAAGAG-----------------TT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TATCAAATGTA-ATCTCCGAT-------ACTTTGTCCTTATTTATT------------------------------------------------------------------------AATGCAATTA-------------CTT---------AGTGCAA---------------------------AGTTTTATGTTTCG---ATGTTTAA----TCCTAGACTTAA--------------ATACATGGCCAAAAA----------------------------TAATGC-----------------------------------------------AAACTCCAATTAGTCTGTAGTTTTATTGTTGC--------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATCCCATTATGAATCTGCACG-------AGCGCGTCCTCAGCGTTTTGGCCTGCAAGGTGGGTTAAAAAAATAC---C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------TTTTAAATGGGTTTTC----TCCT--------------------------AACACT----CTATCTT---CTTCCCCAGTTTGTCAACGAGGTGGTGATTGGGGCTCCCTACTGCGTAACCGAGGAG-----------------CT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TACTAATTGTATATATTTACAGCAATGTAACGCAAGTAGAATGTCTTGGCCAGGAAATGG--CTG----T-------TTTTATCAAAAGAAATCTCCGATACTTTGTCCTTATTTATTAATGCATAAA-------------CTA---------AGTGCAAGTTCA----------------------AGTTTTATGTTTCA---ATGTTTAA----TCTTAGACTTAA--------------ATACATGGCCAAAAA----------------------------TACTGC---------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATCCCATTATGAATCTGCACG-------AGCGCGTGCTCAGTGTTTTGGCCTGCAAGGTAGGATTGCAATAGATTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------TTTTTAAA-TATTATC----TCAT--TTT---------------------AAAACTTC-----TTTT---TTCCCCCAGTTTGTCAATGAGGTAGTAATCGGAGCTCCCTACTGTGTCACTGAAGAG-----------------CT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................CTACTGTGTCACTGAAGAG-----------------CT	21	1	39.00	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TCTGCACG-------AGCGCGTGCTCAGTGTT.................................................................................................................................................................................................................................................................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................ACG-------AGCGCGTGCTCAGTGTTTTGGC............................................................................................................................................................................................................................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6
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...........................................................................................................................................................................................................................................................................................................................................................TTTGTCAATGAGGTAGTAATC..............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....CATTATGAATCTGCACG-------AGC...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TATGAATCTGCACG-------AGCGCGT...........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TATGAATCTGCACG-------AGCGCGTGCT........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................TAATCGGAGCTCCCTACTGTG..............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CTGCACG-------AGCGCGTGCTCAGTGTT.................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AGCTCCCTACTGTGTCACT.........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TCAATGAGGTAGTAATCGGAGCTCC......................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TCAATGAGGTAGTATC...............................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATCCCATTATGAATCTGCACG-------AGCGCGTGCTCAGTGTTTTGGCCTGCAAGGTAGGATTGCAATCGGT---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------TTTTAAAG-TAATATC----TCAT------A-------------------AACACTTG-----TCTT---TTCCCCCAGTTTGTCAATGAGGTAGTAATTGGAGCTCCCTACTGCGTCACCGAAGAG-----------------CT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................GTCAATGAGGTAGTAATTGGA...........................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TTGTCAATGAGGTAGTAATTGGAGC.........................................	25	1	2.00	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AATTGGAGCTCCCTACTGC...............................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
......TTATGAATCTGCACG-------AGC...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TGAGGTAGTAATTGGAGCTCCCT....................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................TGAGGTAGTAATTGGAGCTC.......................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATTATGAATCTGCACG-------AGC...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TGGAGCTCCCTACTGCGTCACCGAAGAG-----------------C.	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....CATTATGAATCTGCACG-------AGCGCGTGC.........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TTGGAGCTCCCTACTGCGTCACCGAAG.....................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

ATCCCATTATGAATCTGCACG-------AGCGCGTGCTCAGTGTTTTGGCCTGCAAGGTAGGATTGCATTT--C---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------TTTTAAAA-TATTATCATTATCAT------T-------------------AACACTTG-----TTTT---TTCCCCCAGTTTGTCAATGAGGTAGTAATTGGAGCTCCCTACTGCGTCACCGAAGAG-----------------CT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................CAGTGTTTTGGCCTGCAA......................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
...............................GCGTGCTCAGTGTTTTGGCC...........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

droYak3

ATCCCATTATGAATCTGCACG-------AGCGCGTGCTTAGCGTTTTGGCCTGCAAGGTAAGATTGCAGTTGAC---A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------TTTTAAAA-GGTTATC----TCAA--------TCGAT--------------------T----TTTTCCAATTTCCCCAGTTTGTCAATGAGGTGGTCATTGGAGCTCCCTACTGCGTTACCGAAGAG-----------------CT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................AGCTCCCTACTGCGTTACCGAAGA....................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GAGGTGGTCATTGGAGCTCCCT....................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
..............................CGCGTGCTTAGCGTTTTGGCCTGC........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................AGCGCGTGCTTAGCGTTTTGGCC...........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TTAGCGTTTTGGCCTGCAAGGTAAGATT.............................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AATGAGGTGGTCATTGGAGCTC.......................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TTGTCAATGAGGTGGTCATTGGAGC.........................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AATGAGGTGGTCATTGGAGCTCC......................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

TATCAAATGTAA-TCTCTGAT-------ACTTTGTCCCTATTTATT------------------------------------------------------------------------AATGCATATACAA----------CAA---------AGTGCAAGTTCA----------------------AGTTTTATGTTTCA---ATGATTTA----TCTTAGACTTAA--------------ATACATGGCCAAATA----------------------------TATTGC-----------------------------------------------AAATTC-----------------------------------------------CAAA-----------------TA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................CTTAGACTTAA--------------ATACATGGCC..................................................................................................................................................................	21	1	2.00	2	1	0	0	0	1	0	0
..........AA-TCTCTGAT-------ACTTTGTCCCT.......................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0
...................................................................................................................................................................CA----------------------AGTTTTATGTTTCA---ATGATT............................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................AA---------AGTGCAAGTTCA----------------------AGTTTTATGTT........................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................ATATACAA----------CAA---------AGTGCAAGT............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................ATGTTTCA---ATGATTTA----TCT...................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................TATACAA----------CAA---------AGTGCAAGTTC..........................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................TCA---ATGATTTA----TCTTAGACTT............................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................GTTTCA---ATGATTTA----TCTTA.................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................TTA----TCTTAGACTTAA--------------ATACATGGCCAAAT..............................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................TTATGTTTCA---ATGATTTA----TCTTA.................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................GTTTTATGTTTCA---ATGATTT...........................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.....AATGTAA-TCTCTGAT-------ACTTTGTCCC........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................TCTTAGACTTAA--------------ATACATGGC...................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.........TAA-TCTCTGAT-------ACTTTGTCCCTATT....................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................GCAAGTTCA----------------------AGTTTTATGTT........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................TCA----------------------AGTTTTATGTTTCA---ATG...............................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
....................T-------ACTTTGTCCCTATC....................................................................................................................................................................................................................................................................................................................................................................................	15	10	0.40	4	0	0	0	0	0	0	4

dvi_22108

scaffold_4534:206-270 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

##################################################-----------------------------------------------------------------################################################## ATCCCATTATGAATCTGCACGAGCGTGTGCTTAGCGTCTTGGCCTGCAAGGTAAATCCCTACATACTTATCGCAGACAATTAAATGAATAACTAACAACCTCTTACACTCTGCAGTTTGTCAACGAGGTAGTCATTGGCGCACCCTACTGTGTCACAGAAGAGCT ************************************************.....................(((((................................)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060670 9_testes_total	V047 embryo	SRR060678 9x140_testes_total	SRR060679 140x9_testes_total	GSM1528803 follicle cells	M047 female body	SRR060660 Argentina_ovaries_total	SRR060663 160_0-2h_embryos_total	SRR060665 9_females_carcasses_total	SRR060681 Argx9_testes_total	SRR060687 9_0-2h_embryos_total	M061 embryo	SRR060658 140_ovaries_total	SRR060661 160x9_0-2h_embryos_total	SRR060680 9xArg_testes_total	SRR1106726 embryo_14-16h	V116 male body	V053 head
...................CGAGCGTGTGCTTAGCGTCTTGGCC.........................................................................................................................	25	0	3	1.00	3	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0
..........................GTGCTTAGCGTCTTGGCCT........................................................................................................................	19	0	3	1.00	3	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GCGTGTGCTTAGCGTCTTGGCCTGC......................................................................................................................	25	0	3	0.67	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.......................CGTGTGCTTAGCGTCTTGG...........................................................................................................................	19	0	3	0.67	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TTATGAATCTGCACGAGCGTG..........................................................................................................................................	21	0	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CACGAGCGTGTGCTTAGCGTCTT.............................................................................................................................	23	0	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................CGTGTGCTTAGCGTCTTGGC..........................................................................................................................	20	0	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TGCTTAGCGTCTTGGCCT........................................................................................................................	18	0	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........GAATCTGCACGAGCGTGTG........................................................................................................................................	19	0	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................GTCATTGGCGCACCCTACTGTGTCACA........	27	0	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................TTTGTCAACGAGGTAGTCATTGGCGCACCC....................	30	0	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................TAGTCATTGGCGCACCCTACTG...............	22	0	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GTGTGCTTAGCGTCTTGGCCTGC......................................................................................................................	23	0	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACCCTACTGTGTCACAGAAGAGCT	24	0	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................GCGTGTGCTTAGCGTCTTGGCCT........................................................................................................................	23	0	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GTTTGTCAACGAGGTAGTC................................	19	0	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TAGCGTCTTGGCCTGCAAGTT.................................................................................................................	21	1	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........AATCTGCACGAGCGTGTG........................................................................................................................................	18	0	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................CGTGTGCTTAGCGGCTTGGC..........................................................................................................................	20	1	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....CATTATGAATCTGCACGAGCG............................................................................................................................................	21	0	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................AGGTAGTCATTGGCGCAC......................	18	0	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......TATGAATCTGCACGAGCGTGTGCTTT....................................................................................................................................	26	1	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................CTTATCGCAGACAATTAAA.................................................................................	19	0	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................GCAAGTTTGTCAACGAGGTAGTCATT.............................	26	3	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................TAAACGAATAACTAAAAACCTC...............................................................	22	2	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TAGCGTCTTGGCCTGCAAGT..................................................................................................................	20	1	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................GCGTTTGCTTAGCTTGTTGGC..........................................................................................................................	21	3	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................GCCCACCCTACTATCTCA..........	18	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................GTTTGCCAACGATGTATTCA...............................	20	3	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TTGGTGAACCCTACTGTC.............	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1