ID:

dvi_22059

 Coordinate:

scaffold_13052:1708043-1708193 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.2 -8.8

Flybase annnotation

exon [dvir_GLEANR_31:1]; CDS [Dvir\GJ18433-cds]; intron [Dvir\GJ18433-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTAAGCAGCGATGGCATTGGGCCTACAACAAAATCATAATGCAGCTAAATGTGAGTACCTGATTATATAAATATTACATAGAAATTATTTTTAAAATTTGTGATAAGCGTATAAATAATTTCTTATTTAGAGCTTTAAGATGAGTTTTGGGGGATTGGATAAAAATTTATCATACTGTTTTAATATCTCTTTTAATCCATTCAAAAATGTCTTATTTTGTTGTTGTTTTAATACCCTGAACTCAATGAAAA
*******************************************************************************************************............((((((((....((((((((......)))))))))))))))).********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060654
160x9_ovaries_total
 SRR060689
160x9_testes_total
 SRR060688
160_ovaries_total
 SRR060678
9x140_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060655
9x160_testes_total
 SRR060656
9x160_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR060673
9_ovaries_total
 SRR060670
9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 V047
embryo
 SRR060663
160_0-2h_embryos_total
 GSM1528803
follicle cells
.................................TCATAATGCAGCTAAATGTGAGT................................................................................................................................................................................................... 23 0 1 10.00 10 3 4 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................TAAGCGTATAAATAATTTCTTATTTAG......................................................................................................................... 27 0 1 6.00 6 2 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................TCATAATGCAGCTAAATGTGAGTACC................................................................................................................................................................................................ 26 0 1 3.00 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TGTGATAAGCGTATAAATAATTTCTTAT............................................................................................................................. 28 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................TACAACAAAATCATAATGCAGCTAAA.......................................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AGAGCTTTAAGATGAGTTTTGGG.................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TTTAAGATGAGTTTTGGGG................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................TCATAATGCAGCTAAATGTGAGTC.................................................................................................................................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TCATAATGCAGCTAAATGTAAA.................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................ATGCAGCTAAATGTGAGT................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GTGATAAGCGTATAAATAATT................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................CTACAACAAAATCATAATGCAGCTATT.......................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TCATAATGCAGCTAAATGTGA..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................CTTTAAGATGAGTTTTGGGGG.................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................TAAGATGAGTTTTGGGGGATTGG............................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAATGTCTTATTTTGTTGTTGT......................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................TACAACAAAATCATAACGCAGCT............................................................................................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................TCATAATGCAGCTAAATGCGAGTACC................................................................................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAAGCGTATAAATAATTTCTTATTTAGA........................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................TCATAATGCAGCTAAATGTGAGA................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................CATACTGTTTTAATATCTCTTC........................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AGATGAGTTTTGGGGGATTG.............................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TAAGCGTATAAATAATTTCTTATTTA.......................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.TAAGCAGCGATGGCATTGGGC..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................TCATAATGCAGCTAAATGTGAG.................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TCATAATGCAGCTAAATGTGAGTA.................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................GCTTTAAGATGAGTTTTGGGG................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TAATGCAGCTAAATGTGAGTACCTGAT............................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TAGAAATTATTTTTAAAATTT........................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GATAAGCGTATAAATAATTTCTTATC............................................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CCTACAACAAAATCATAATGCAGCTAA........................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AGAGCTTTAAGATGAGTTTTGG..................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CTAAATGTGAGTACCTGATTATAT....................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GATAAGCGTATAAATAATTTCTTATT............................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTTTAATACCCTGAACTCAATA.... 22 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAAATGTCTGATTATGTTG............................. 19 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................ATGCAGCTATAAGTGAGT................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................GTCTTATGTTATTGTTTTTTTAA.................... 23 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................AAAGCAGCAAAATGTGAGT................................................................................................................................................................................................... 19 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................GATGTTGTTTTAATTCCCTC............. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................TTTGGGATAAGCCTATAAAA....................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GATTCGTCGCTACCGTAACCCGGATGTTGTTTTAGTATTACGTCGATTTACACTCATGGACTAATATATTTATAATGTATCTTTAATAAAAATTTTAAACACTATTCGCATATTTATTAAAGAATAAATCTCGAAATTCTACTCAAAACCCCCTAACCTATTTTTAAATAGTATGACAAAATTATAGAGAAAATTAGGTAAGTTTTTACAGAATAAAACAACAACAAAATTATGGGACTTGAGTTACTTTT
*********************************************************************************************............((((((((....((((((((......)))))))))))))))).******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060689
160x9_testes_total
 SRR060688
160_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060683
160_testes_total
 SRR060656
9x160_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 V047
embryo
....................CGGATGTTGTTTTAGTATTACGT................................................................................................................................................................................................................ 23 0 1 17.00 17 13 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AAATAGTATGACAAAATTATAGAGAAA........................................................... 27 0 1 9.00 9 7 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATTACGTCGATTTACACTCATGGACTA............................................................................................................................................................................................ 27 0 1 6.00 6 0 0 0 3 3 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TAAATAGTATGACAAAATTATAGAGAAA........................................................... 28 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CCCGGATGTTGTTTTAGTATTACGT................................................................................................................................................................................................................ 25 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATGTTGTTTTAGTATTACGT................................................................................................................................................................................................................ 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AATAGTATGACAAAATTATAGAGAAA........................................................... 26 0 1 3.00 3 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................CGAAATTCTACTCAAAACCCCCTAACCT............................................................................................ 28 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CATGGACTAATATATTTATAATGTATCT......................................................................................................................................................................... 28 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AAAATAGTATGACAAAATTATAGAGAAA........................................................... 28 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GTCGATTTACACTCATGGACTAAT.......................................................................................................................................................................................... 24 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
........................................................TGGACTAATATATTTATAATGTATCTT........................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GTATGACAAAATTATAGAGAAA........................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ACAAAATTATGGGACTTGAGTTACTTTT 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAACAACAAAATTATGGGACTTGAGT....... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAACAACAAAATTATGGGACTTGAGTTA..... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TAGTATGACAAAATTATAGAGAAA........................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GATGTTGTTTTAGTATTACGT................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CAAAATTATGGGACTTGAGTTACTTT. 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................ATAAAAATTTTAAACACTATTCGCATAT.......................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GTCGATTTACACTCATGGACTAATAT........................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........GCTACCGTAACCCCGATGTTGTTT........................................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................CCGGATGTTGTTTTAGTATTACGT................................................................................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TAATAAAAATTTTAAACACTATTCGCAT............................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AACCTATTTTTAAATAGTATGACAAAAT..................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TAAAGAATAAATCTCGAAATT................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TCGATTTACACTCATGGACTAAT.......................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................AATAGTATGACAAAATTACAGAGAAA........................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TCGCTACCGTAACCCGGATGTTGTTT........................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTACGTCGATTTACACTCATGGACTAAT.......................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................AACCCGGATGTTGTTTTAGTATTACGT................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CCCGGATGTTGTTTTAGTA...................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ATAGTATGACAAAATTATAGAGA............................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TATAGAGAGAATTAGGTAAGT................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................GGATGTTGTTTTAGTATTACGT................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TTTAGTATTACGTCGATTTACACT..................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TCGATTTACACTCATGGACTAATAT........................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ACTGGACTAATATATTTATAATGTATC.......................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...ACGTCGCTACCGTAACCCGGATGTTGT............................................................................................................................................................................................................................. 27 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TAATAAAAATTTTAAACACTATTC................................................................................................................................................ 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTACGTCGATTTACACTCATGGACTA............................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................CCCGGATGTTGTTTTAGTATTACGTC............................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TGGATGTTGTTTTAGTATTACGT................................................................................................................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CAAAATTATGGGACTTGAGTTACTTTT 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CAGGTAAGTTTTTACAGAATAAAACAAC............................. 28 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TAAATAGCATGACAAAATTATAGAGAAA........................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TATGACAAAATTATAGAGAAA........................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................TGAACACTCTTCGCACATTTAT...................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................ACACTCTTCGCACATTTATT..................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................AACACTCTTCGCACATTTAT...................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................ACACTCTTCGCACATTTAT...................................................................................................................................... 19 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................AAAAAATAGATCTCGAAATT................................................................................................................. 20 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................TTTTTACTCATGGACTACTA......................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13052:1707993-1708243 - dvi_22059 CTAAGCAGCGATGG---CATTGG-GCCT----ACAACAAAATCATAATGCAGCTAAATGTGAGTACCT--GATT-----------------------AT--ATA---------------------------------------AAT-------AT----------------TACA-------------------T-----------A--GAAATTATTTT------------------------------T---AAA--------------------------------------------------ATTTGTGATAAGCGTATAAATAATTTCT------------T----------------------------------------------------------------------------------------------------------------------ATTTAGAGC-------TTTAAGA--------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTTG---------------------------------------GGGGA----T----------------------------------------------------------TGGATAAAAATTT---------AT----------------CATACTGTTTT---AATATCTCTTTTAATCCATT---------CAAAAATGTCTTA-----------------------TTTTG------------------------------------------------------------------TTGTTGTTTTAATACC-----------------------CTGAAC-------------------------TCAATGAAAA---------------------------
droMoj3 scaffold_6540:6557999-6558215 + AATGAAGGCAATGTTCGTAAAGC-ATAA----ATTATAATATAA-------------------------------------------------------------------------------------------------------------ATTATAAATTA------------------------------TAATGTAAATAACA-AAGATTTCTTTTTAATTTTTG--------------------------------------------AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGTTGAATAATGATTTTTTTGCATTTTTATTTTTGTTAGTC---------------------------------------------------------------------------------CAAATTATA--------------------------------------------------------------TAATA------------------AATTATTAT----------------CATACAGTTTTATG------------------TT---------AAAATATGTCTTG-----------------------TTT--------------------------------------------------------------------TGTTTCTTTTTATACC-----------------------CTGAAC-------------------------CCATTTTCAA---------------------------
droGri2 scaffold_6901:442-650 + ATACACATATATAT---ATATAT-ATAC------------------------AT-----------------------------ATATATATATACATATATATATATA--TGCAAAACATACACCT-----------------A------TATACATATATAGA------------------------------TAGTAA---------------------------------------------------------------------------------------------------------------------------------ATAATATTATAATCTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTGGATTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAATACAAAACTTATTGTTTATATTTTGATT--------------------------------------------------------------------------------------------------AGTAACATATAAAAATGCCGTA-----------------------G----------------------------------------------------------------------TTGTGCTATTTATACG-----------------------CTGTAC-------------------------CCACTAAAAA---------------------------
droWil2 scf2_1100000004949:1820461-1820720 + AGTAGTG---CTGA---CATTGT-GTAT----CA-ATTAATTTTAGCTGCATTTATAAAGCTGTATTTTTATTT-----------------------AC--ATA---------------------------------------GAC-------AT----------------AGTATAATAATAATTTTAAGACAT-----------A--GAATATGACT------------------------------------------------------------------------------------------------------TGAAAATAATTTTT------------T----------------------------------------------------------------------------------------------------------------------TTTTAA------------------------------------------------------ATTACCATG------------------A-------------------------------------------------------------------------------GTTTA---------------------------------------ATTCA----TGAAATTCATAATTTTCATTGTTTTTATCGTTGCCACTTCAAAGAA----------G--AATGTAGTTGTTT---------TT----------------CATACGAA-----------------------------------------------------------------------------------------------------------------------------TTACA----TGAAAACTACGCGATTTTTATACCCTTGCAA----------------------------AAA-----------------------GGA---------------------------
dp5 Unknown_group_8:61795-62008 + CTCGGCAACGTTGG---CATTGG-GCTT----ACAACAAAATTATCATGCAGCTTAATGTAAGTAAAA-------------------------------------------------A------AT-----------------A------AATATAAATTCTTA------------------------------TATCCTT--------------------TATTTTTAC--------------------------------------------ATAATATTGTATAAAC--AAGAA---------------------TTATTTAA-----------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------C---------------------------------------------------------------ACCTCCGGTTTTGCTCGCT---------------------------------------------------------------------------------GATAATTTA--------------------------------------------------------------TCTGA------------------AATCAATGTCA------------------------AA--------------------------------------------TGTGAATATAAGTTTAAATGTTA---T-------------------------------------------------------TCAT----------------------------------------------------------------------------------------------------TATTTTGTTTACCCT
droPer2 scaffold_103:46687-46900 + CTCGGCAACGTTGG---CATTGG-GCTT----ACAACAAAATTATCATGCAGCTTAATGTAAGTAAAA-------------------------------------------------A------AT-----------------A------AATATAAATTCTTA------------------------------TATCCTT--------------------TATTTTTAC--------------------------------------------ATAATATTGTATAAAC--AAGAA---------------------TTATTTAA-----------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------C---------------------------------------------------------------ACCTCCGGTTTTGCTCGCT---------------------------------------------------------------------------------GATAATTTA--------------------------------------------------------------TCTGA------------------AATCAATGTCA------------------------AA--------------------------------------------TGTGAATATAAGTTTAAATGTTA---T-------------------------------------------------------TCAT----------------------------------------------------------------------------------------------------TATTTTGTTTACCCT
droAna3 scaffold_13230:2655640-2655854 - ACTAAATCCT-----------------------------------ATTGCTGCCATATGTCTG-----------------------------------------------ATTAA--T------CT-----------------GAA-------AT----------------GCCA------------------------------------------------------------TAAATTTAGTCTTTTT---AAA--------------------------------------------------GTTAGAGGGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGACTTTACATGTTATTTTTGGC----CAAGAAGTTGTAT----------------------------------------------------------------------------------------CTTCAAAGGA----------T--CGGATAACTACATCCTATAGATGTCATATAACTGAATG----------------------------------AT---------CAGAATTGGCATA-----------------------GCT--------------------------------------------------------------------TTGTTGTTTTTATACCCTTGCAG-------------------AG---------G----------------GTATTATAAT---------------------------
droBip1 scf7180000391857:36591-36872 - CTAAAAGATTAAAG---GAATTG-GCTT----TTCAAAACAATAAAAACAAATTAGACATGAGCAAGA-------------------------------------------------CTTTCATAT-----------------A------AAAATAAAATTTCA------------------------------TGGCGAT--------------------CACTTCGA------------------------------------------------------------------------------ACATATAACAAACATGCG-----------------------------------------------------------------------------------------------------------------------------------CTCGAACTTAATTGAAAAC-------TCGCCAGCGAAATGTTTCGACTGATTTG---------------------GA---------CTAGCGGATTAACAATTTACTTTAAAATTTCCTTTTTTTATTTAAAAATTTAAGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTATTAT--------GTTTAGGAAATATTC--------------------------------------------------------------------CTATTGTTGTTATACCCTTGCAG-------------------AG---------G----------------GTATTATAAT---------------------------
droKik1 scf7180000302517:16756-16987 - AAGGAAA--GAAAA---TACTAA-GCCT----AGATTCAAAATA---AGGTTAT------G-------------AAAATAATTATT---------------------------------------------------------------------TAATTATTT------------------------------TTT------------------------TATTTATAA--------------------------------------------ATATTTTTGTTTTAATATAAAAA---------------------ATATTTTA-----------------------------------------------------------------------------------------------------------------------------------ATAAATTTAATTTAAAGG---------------------------------------------------------------------------------------------------------TCGCA---------------------------------------------------------------------------------AATATTTCAAGGG--------------------------------------------------------------AAATTATAAAACCATTT---------TT----------------CATACTGTTAA---AATATTATTTTTAATACTTTT--------C--------------------------------------------------------------------------------------------------TGGAAATTTTTAAATTATTATTTC-----------------------CATATTAGGT----T-----------------------GAA---------------------------
droFic1 scf7180000454040:497817-498142 - CCAGGCACCGATGG---CACTGG-GCGT----ACAATAAAATTATAATGCAGCTAAATGTGAGTATAG-------------------------------------------------A------A---------------------------CATCAAATCTTA------------------------------TAACGTTAACAATCA--AAGCTCTAT------------------------------T------------------------------------AATTTACAATCTATTTTAAATATTAAGATAAACGTATA-----------------------------------------------------------------------------------------------------------------------------------TCCTAT-----CTTAGAGTTATACATTTTACAA--------------------------------------------------------------------------------------------------------------------------------------------TACATTTTC---------------------------------------AGGGTTTTGAGATACTAATAATTTTACGTATTTTTAT-------------------------------------------------------------------------------------AAAACGTTATTTGA-----------------ATAATGATA------------AGC-------------TGTTGGACAGGCAATCCACTTCTTTAAGAGATGAAGTACATCCCCCCACTATTA---------------TATCGAAACTGTTTTCTTGC-------------------TGAAC-------------------------CTGGTGGCCT---------------------------
droEle1 scf7180000491240:190290-190539 + CCAATAAGCTATAG---AATTAT-ATATATTAAAAACAAAATAATCATTTATATT----TT--------------------------------------------------------------------------------------------ATTAAGCTTAA------------------------------TCACATCAGTAAAGT--AATTTTTTT------------------------------T------------------------------------AAT-----------------ATTTCTAGTAATAATATAAATAT--------------------------------------------------------GATTTAG-AGAAAACTTTGGAAGACTAGCAT---------------------------------------------------------------------------------------------------------------------T------------------A-------------------------------------------------------------------------------ACTTG---------------------------------------------------------------------------------------------------------------------------------AC----------------CCTACAAAATTATG---------CTTT----------------TGAAAATAT---------------------------------------------------------------------------------TTAGA----TGGTAAATATAACCTAATTATACCCTTGCAGAGGGTATTATAATTTCAGTCAGAAGT------------------------TTGCAAC---------------------------
droRho1 scf7180000770477:14574-14801 + CTAGGCAAAGATGG---CACTGG-GCGT----ACAATAAAATAATTATGCAGCTTAATGTAAGTACAT-------------------------------------------------A------A---------------------------------------------------------------------T-----------A--TACG-TTTTTC----------------ACAATTT-------TCAAATATT--------------------------------------------------------------------------------------------CACAAGGAAATATAAAAAAATACAAATTTATT-------------------------------------------------------------------------------------TTTA------------------------------------------------------ATTGCTACT------------------G-------------------------------------------------------------------------------TTTTG---------------------------------------CAGTA----TTAAA------------------------------------------------------------------------------------------------------------------------------GT---------CAAAAATATCTT-----------------------------------------------------------------------CT----------------------CACTCTTTGTTAAACT-----------------------CGTTACTCCTAGAAT-----------------------AAAAGGTAATTTTGTTGTCGTGTGTAACGA
droBia1 scf7180000301495:745217-745450 + AAAATCAAATGTA-----------------------------CAAAATGTATTT-----------------------------ATTTAGTAGATCGTTTATATATTTCCGACA---------------------------------------------------------------------------------C-----------A--AAAATTGATTT-CA------------GAACTTTTGTTTGC------------------------------------------------------------------CGAAGGTGCG-----------------------------------------------------------------------------------------------------------------------------------ATC-------------------------------------------------------GTC------------ACTATATTTTTACCTCGT--------------------------------------------------------------------------TAAGA---GGTGTTTTTGTAGAGTATGGATACG-------------------------------------CATAAAAAATTC----------------------------------------------------------------------------AATGATCAGACGGTGTTAGG---TGT--------------TCTGAACT-AAAAAGTGTGGT-------------------TGATT---T-------------------------------------------------------GCAA-----------CCATTTTTATACCCTTGC--------------------------------------------------------AGA---------------------------
droTak1 scf7180000415876:577689-577909 - AGCACA---GATCG---CAATGTGGCAA----ATCAAATAAATGATATGCAATCAAGGGTAAGTTTG-------------------------------------------ATCTAATTTGAATTCT------------------------------------------------A-------------------A-----------A--TAAATGGTTAT-----------------------------------------------------CAGATTTGTAA------------------------------------------TTAATATTTTTATAAACTTCATATTCCTATTCAACTAAACTAAAATCAAAAT-------------------------------------------------------------------------------------------------------------------------------------------TTTAGTTTAA--ACCACTTTTTCACA--------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------GT---------CAAATA------------------------------GTT--------------------------------------------------------------------CTTATATTTTTATACC-----------------------CGTTACTCGTAGAGT-----------------------AAA---------------------------
droEug1 scf7180000409551:206118-206312 - AGCAATAGCGTTAA---GGTTAA-AGA--------------------------------------AG-------------------------------------------ATAGCACTGGAATTCGAGAACTCTGAATATTAAAAAATTATATTTTAATTTCTT------------------------------GTTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATATTTACATTTTTTCTTATTTTTGTGATGATT---T--AATATGTAAGTAG-TAA-TGGCACTTAACTA---------AT----------------CAAAC--------------------------------------------TGGCTT-----------------------------------------------------------------------------------------------ACATTTTTATTATATC-----------------------CGTTACTCGTTGA-------------------------GTA---------------------------
dm3 chrX:18787826-18788074 + TATAATTAAATAA-------------------------------TTAAGTGCCTTT---------------------------AACTATAAATA--AAT--ATTAATTTAACA---------------------------------------------------------------------------------T-----------T--AAAAATATTAT------------------------------T---AAAATTAATAATATTAATTAATACTTGT--------------------------------------------------------------------------------------------ATTTATATTAATAT-ATTG-------------------TAT-------------TTTTGTAACAATTTCTGCTTAAAATG-------------------------------------------------------AGTTCGGTTTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------TGAATTACAATTTC-----TATATCAATTTACCGGTTC------------------------------------AGCAACG-----------------GGGATTCAAATCTGA----CT---T-------------------------------------------GT----------------------TATCCATTTTTATACC-----------------------CGTTACTCGAAGAGT-----------------------AAA---------------------------
droSim2 3r:7194441-7194646 - TATAAATAAA--------------------------------TAATATATATGTAGATATATGTACA-------------------------------------------ATA---------------------------------------------------------------------------------T-----------A--AATGATATTTC------------------------------A---AAAATTTTTTGTAGGTATTAAGATCTGTATTGAACG-------------------TTA---------------------------------------------------------------------------------------------AAAAATAAATATAAACCAATTTGCTTTATAAGACATTGTACTAAAAGTCCATTC-------------------------------------------------------ATT------------CCTTTCTT---------------------------------------------------------------------------------------------------------------AATACACA----------TATATTTCAAAAA--------------------------------------------------------------GAATTATGCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAT-TTGTTACC-----------------------TTTTT-----------------------------------C---------------------------
droSec2 scaffold_6:83229-83406 + TACATGATTAT-------------------------------------------------A-------------AAAAGATTTATTTAATTG------------------ATT------------------------------------------TAATTTGTCGTTCCACAACA-------------------A-----------A--TAAATTGTTTT-AA------------AAGTATTTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTAATTTTGTCATCAAAACA-------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT----------------CATA-----------------------------------------------------AT--------TTTTGGTGAG-------------------------------------------------------------------------TATTCCTTTTTATACC-----------------------TTTTTCTTGTAGAGTAAACTATATACTAGATTCGTTGAAAA---------------------------
droYak3 2L:11679138-11679391 + CTTAGTGTTATTGGTCCTGCAGT-TT--------------------AAGCTTCTAAATGTGCATACAT--TGTT---------ATT--G-AAACTGGTTATAACTATC-------------------------------------------------------------------------------------------TAGAT--------------TT--------GAAGATTTAGATTTAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTATTATGAAATGTAAGACTGCACATATT---TTGAGCTATTTTAGA-------C-------TTTTAAGGAGACC--TTTAAAATGCCAAAATTGG-----TA----TGCAAGTCTG-----------------------------------------------------------------------AC----------------CT--------------------------------TCTAGCGT-CTAAAGTGTCGTT-----------------------TCTGC------------------------------------------------------------------GTGCCGTTGTTATACC-----------------------CGTTACTCGTAGAGT-----------------------AAA---------------------------
droEre2 scaffold_4784:22480577-22480798 + CCTATAACCGGAT--TCTACTGT-ATAT----AT----------------AAATATATATATATATAT-------------------------------------------------A------A----------------------------AA---------------------------------------T-----------A--T--------------------------ATATTAT-------ATGAATATATAATAAGATA----------------------------------------------------TATGAATATGT----------------------------------------GCATATTTATTAATGT-TTAGAAAAAAACTTAGG-----------------------------------------------------------------------------------------------TTTAATATA---------------------GA---------CAG---GTTTTA----------------------------------------------------------------------------------------------------------------------------------------------TTTTATTCTTCGAATTGT-------------------------------------------------------------------------------GCA-----------------------ACTATCGTATGAAAACGACGATCAT-------------------------------------------------------------------------------------------GAATAGTAGTTATACC-----------------------CGTTACTCGTAGAGA-----------------------AAT---------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTAAGCAGCGATGG---CATTGG-GCCT----ACAACAAAATCATAATGCAGCTAAATGTGAGTACCT--GATT-----------------------AT--ATA---------------------------------------AAT-------AT----------------TACA-------------------T-----------A--GAAATTATTTT------------------------------T---AAA--------------------------------------------------ATTTGTGATAAGCGTATAAATAATTTCT------------T----------------------------------------------------------------------------------------------------------------------ATTTAGAGC-------TTTAAGA--------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTTG---------------------------------------GGGGA----T----------------------------------------------------------TGGATAAAAATTT---------AT----------------CATACTGTTTT---AATATCTCTTTTAATCCATT---------CAAAAATGTCTTA-----------------------TTTTG------------------------------------------------------------------TTGTTGTTTTAATACC-----------------------CTGAAC-------------------------TCAATGAAAA---------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................TCATAATGCAGCTAAATGTGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23110.0010000030000000000000000001000000000000002400000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAAGCGTATAAATAATTTCT------------T----------------------------------------------------------------------------------------------------------------------ATTTAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2716.006000021100000000000000000001000000000000100000000000000000000000
.........................................TCATAATGCAGCTAAATGTGAGTACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.003000010000000000000000000000000000000001100000000000000000000000
......................................................................................................................................................................................................................................................................................................................TGTGATAAGCGTATAAATAATTTCT------------T----------------------------------------------------------------------------------------------------------------------AT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002000002000000000000000000000000000000000000000000000000000000000
...........................T----ACAACAAAATCATAATGCAGCTAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000000000000000200000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGC-------TTTAAGA--------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTTG---------------------------------------GG...........................................................................................................................................................................................................................................................................................................................................................................2311.001000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAAGA--------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTTG---------------------------------------GGG..........................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000100000000000000000000000000000
.........................................TCATAATGCAGCTAAATGTGAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
..............................................ATGCAGCTAAATGTGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GTGATAAGCGTATAAATAATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
..........................CT----ACAACAAAATCATAATGCAGCTATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000001000000000000000000000000
.........................................TCATAATGCAGCTAAATGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------TTTAAGA--------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTTG---------------------------------------GGGG.........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGA--------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTTG---------------------------------------GGGGA----T----------------------------------------------------------TGG......................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTCTTA-----------------------TTTTG------------------------------------------------------------------TTGTTGT....................................................................................................2211.001000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAAGCGTATAAATAATTTCT------------T----------------------------------------------------------------------------------------------------------------------ATTTAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000100000000000000000000000000000000000000
.........................................TCATAATGCAGCTAAATGTGAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTGTTTT---AATATCTCTTC........................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA--------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTTG---------------------------------------GGGGA----T----------------------------------------------------------TG.......................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TAAGCGTATAAATAATTTCT------------T----------------------------------------------------------------------------------------------------------------------ATTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
.TAAGCAGCGATGG---CATTGG-GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
.........................................TCATAATGCAGCTAAATGTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010000000000000000000000000000000000000000000000000000000000
.........................................TCATAATGCAGCTAAATGTGAGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-------TTTAAGA--------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTTG---------------------------------------GGG..........................................................................................................................................................................................................................................................................................................................................................................2111.001000010000000000000000000000000000000000000000000000000000000000
............................................TAATGCAGCTAAATGTGAGTACCT--GAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................T-----------A--GAAATTATTTT------------------------------T---AAA--------------------------------------------------ATTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................GATAAGCGTATAAATAATTTCT------------T----------------------------------------------------------------------------------------------------------------------ATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000001000000000000000000000000
.........................CCT----ACAACAAAATCATAATGCAGCTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGC-------TTTAAGA--------------------------------------------------------------------------------------------------------------------------------------------TGAGTTTTG---------------------------------------G............................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
....................................................CTAAATGTGAGTACCT--GATT-----------------------AT--AT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................GATAAGCGTATAAATAATTTCT------------T----------------------------------------------------------------------------------------------------------------------ATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATACC-----------------------CTGAAC-------------------------TCAATA...............................2230.331000000000000000000000000000010000000000000000000000000000000000
droMoj3
AATGAAGGCAATGTTCGTAAAGC-ATAA----ATTATAATATAA-------------------------------------------------------------------------------------------------------------ATTATAAATTA------------------------------TAATGTAAATAACA-AAGATTTCTTTTTAATTTTTG--------------------------------------------AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGTTGAATAATGATTTTTTTGCATTTTTATTTTTGTTAGTC---------------------------------------------------------------------------------CAAATTATA--------------------------------------------------------------TAATA------------------AATTATTAT----------------CATACAGTTTTATG------------------TT---------AAAATATGTCTTG-----------------------TTT--------------------------------------------------------------------TGTTTCTTTTTATACC-----------------------CTGAAC-------------------------CCATTTTCAA---------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTATACC-----------------------CTGAAC-------------------------CC...................................19200.051000010
droGri2
ATACACATATATAT---ATATAT-ATAC------------------------AT-----------------------------ATATATATATACATATATATATATA--TGCAAAACATACACCT-----------------A------TATACATATATAGA------------------------------TAGTAA---------------------------------------------------------------------------------------------------------------------------------ATAATATTATAATCTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTGGATTTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAATACAAAACTTATTGTTTATATTTTGATT--------------------------------------------------------------------------------------------------AGTAACATATAAAAATGCCGTA-----------------------G----------------------------------------------------------------------TTGTGCTATTTATACG-----------------------CTGTAC-------------------------CCACTAAAAA---------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AGTAGTG---CTGA---CATTGT-GTAT----CA-ATTAATTTTAGCTGCATTTATAAAGCTGTATTTTTATTT-----------------------AC--ATA---------------------------------------GAC-------AT----------------AGTATAATAATAATTTTAAGACAT-----------A--GAATATGACT------------------------------------------------------------------------------------------------------TGAAAATAATTTTT------------T----------------------------------------------------------------------------------------------------------------------TTTTAA------------------------------------------------------ATTACCATG------------------A-------------------------------------------------------------------------------GTTTA---------------------------------------ATTCA----TGAAATTCATAATTTTCATTGTTTTTATCGTTGCCACTTCAAAGAA----------G--AATGTAGTTGTTT---------TT----------------CATACGAA-----------------------------------------------------------------------------------------------------------------------------TTACA----TGAAAACTACGCGATTTTTATACCCTTGCAA----------------------------AAA-----------------------GGA---------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGTTTTTATCGTTGCCA................................................................................................................................................................................................................................................................................................................................2011.00100010
dp5
CTCGGCAACGTTGG---CATTGG-GCTT----ACAACAAAATTATCATGCAGCTTAATGTAAGTAAAA-------------------------------------------------A------AT-----------------A------AATATAAATTCTTA------------------------------TATCCTT--------------------TATTTTTAC--------------------------------------------ATAATATTGTATAAAC--AAGAA---------------------TTATTTAA-----------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------C---------------------------------------------------------------ACCTCCGGTTTTGCTCGCT---------------------------------------------------------------------------------GATAATTTA--------------------------------------------------------------TCTGA------------------AATCAATGTCA------------------------AA--------------------------------------------TGTGAATATAAGTTTAAATGTTA---T-------------------------------------------------------TCAT----------------------------------------------------------------------------------------------------TATTTTGTTTACCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CTCGGCAACGTTGG---CATTGG-GCTT----ACAACAAAATTATCATGCAGCTTAATGTAAGTAAAA-------------------------------------------------A------AT-----------------A------AATATAAATTCTTA------------------------------TATCCTT--------------------TATTTTTAC--------------------------------------------ATAATATTGTATAAAC--AAGAA---------------------TTATTTAA-----------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------C---------------------------------------------------------------ACCTCCGGTTTTGCTCGCT---------------------------------------------------------------------------------GATAATTTA--------------------------------------------------------------TCTGA------------------AATCAATGTCA------------------------AA--------------------------------------------TGTGAATATAAGTTTAAATGTTA---T-------------------------------------------------------TCAT----------------------------------------------------------------------------------------------------TATTTTGTTTACCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACTAAATCCT-----------------------------------ATTGCTGCCATATGTCTG-----------------------------------------------ATTAA--T------CT-----------------GAA-------AT----------------GCCA------------------------------------------------------------TAAATTTAGTCTTTTT---AAA--------------------------------------------------GTTAGAGGGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGACTTTACATGTTATTTTTGGC----CAAGAAGTTGTAT----------------------------------------------------------------------------------------CTTCAAAGGA----------T--CGGATAACTACATCCTATAGATGTCATATAACTGAATG----------------------------------AT---------CAGAATTGGCATA-----------------------GCT--------------------------------------------------------------------TTGTTGTTTTTATACCCTTGCAG-------------------AG---------G----------------GTATTATAAT---------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTTTTTATACCCTTGCAG-------------------AG---------......................................................24130.081010000
droBip1
CTAAAAGATTAAAG---GAATTG-GCTT----TTCAAAACAATAAAAACAAATTAGACATGAGCAAGA-------------------------------------------------CTTTCATAT-----------------A------AAAATAAAATTTCA------------------------------TGGCGAT--------------------CACTTCGA------------------------------------------------------------------------------ACATATAACAAACATGCG-----------------------------------------------------------------------------------------------------------------------------------CTCGAACTTAATTGAAAAC-------TCGCCAGCGAAATGTTTCGACTGATTTG---------------------GA---------CTAGCGGATTAACAATTTACTTTAAAATTTCCTTTTTTTATTTAAAAATTTAAGTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTATTAT--------GTTTAGGAAATATTC--------------------------------------------------------------------CTATTGTTGTTATACCCTTGCAG-------------------AG---------G----------------GTATTATAAT---------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAGGAAA--GAAAA---TACTAA-GCCT----AGATTCAAAATA---AGGTTAT------G-------------AAAATAATTATT---------------------------------------------------------------------TAATTATTT------------------------------TTT------------------------TATTTATAA--------------------------------------------ATATTTTTGTTTTAATATAAAAA---------------------ATATTTTA-----------------------------------------------------------------------------------------------------------------------------------ATAAATTTAATTTAAAGG---------------------------------------------------------------------------------------------------------TCGCA---------------------------------------------------------------------------------AATATTTCAAGGG--------------------------------------------------------------AAATTATAAAACCATTT---------TT----------------CATACTGTTAA---AATATTATTTTTAATACTTTT--------C--------------------------------------------------------------------------------------------------TGGAAATTTTTAAATTATTATTTC-----------------------CATATTAGGT----T-----------------------GAA---------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CCAGGCACCGATGG---CACTGG-GCGT----ACAATAAAATTATAATGCAGCTAAATGTGAGTATAG-------------------------------------------------A------A---------------------------CATCAAATCTTA------------------------------TAACGTTAACAATCA--AAGCTCTAT------------------------------T------------------------------------AATTTACAATCTATTTTAAATATTAAGATAAACGTATA-----------------------------------------------------------------------------------------------------------------------------------TCCTAT-----CTTAGAGTTATACATTTTACAA--------------------------------------------------------------------------------------------------------------------------------------------TACATTTTC---------------------------------------AGGGTTTTGAGATACTAATAATTTTACGTATTTTTAT-------------------------------------------------------------------------------------AAAACGTTATTTGA-----------------ATAATGATA------------AGC-------------TGTTGGACAGGCAATCCACTTCTTTAAGAGATGAAGTACATCCCCCCACTATTA---------------TATCGAAACTGTTTTCTTGC-------------------TGAAC-------------------------CTGGTGGCCT---------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CCAATAAGCTATAG---AATTAT-ATATATTAAAAACAAAATAATCATTTATATT----TT--------------------------------------------------------------------------------------------ATTAAGCTTAA------------------------------TCACATCAGTAAAGT--AATTTTTTT------------------------------T------------------------------------AAT-----------------ATTTCTAGTAATAATATAAATAT--------------------------------------------------------GATTTAG-AGAAAACTTTGGAAGACTAGCAT---------------------------------------------------------------------------------------------------------------------T------------------A-------------------------------------------------------------------------------ACTTG---------------------------------------------------------------------------------------------------------------------------------AC----------------CCTACAAAATTATG---------CTTT----------------TGAAAATAT---------------------------------------------------------------------------------TTAGA----TGGTAAATATAACCTAATTATACCCTTGCAGAGGGTATTATAATTTCAGTCAGAAGT------------------------TTGCAAC---------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTAGGCAAAGATGG---CACTGG-GCGT----ACAATAAAATAATTATGCAGCTTAATGTAAGTACAT-------------------------------------------------A------A---------------------------------------------------------------------T-----------A--TACG-TTTTTC----------------ACAATTT-------TCAAATATT--------------------------------------------------------------------------------------------CACAAGGAAATATAAAAAAATACAAATTTATT-------------------------------------------------------------------------------------TTTA------------------------------------------------------ATTGCTACT------------------G-------------------------------------------------------------------------------TTTTG---------------------------------------CAGTA----TTAAA------------------------------------------------------------------------------------------------------------------------------GT---------CAAAAATATCTT-----------------------------------------------------------------------CT----------------------CACTCTTTGTTAAACT-----------------------CGTTACTCCTAGAAT-----------------------AAAAGGTAATTTTGTTGTCGTGTGTAACGASizeHit CountTotal NormTotal
No Reads
droBia1
AAAATCAAATGTA-----------------------------CAAAATGTATTT-----------------------------ATTTAGTAGATCGTTTATATATTTCCGACA---------------------------------------------------------------------------------C-----------A--AAAATTGATTT-CA------------GAACTTTTGTTTGC------------------------------------------------------------------CGAAGGTGCG-----------------------------------------------------------------------------------------------------------------------------------ATC-------------------------------------------------------GTC------------ACTATATTTTTACCTCGT--------------------------------------------------------------------------TAAGA---GGTGTTTTTGTAGAGTATGGATACG-------------------------------------CATAAAAAATTC----------------------------------------------------------------------------AATGATCAGACGGTGTTAGG---TGT--------------TCTGAACT-AAAAAGTGTGGT-------------------TGATT---T-------------------------------------------------------GCAA-----------CCATTTTTATACCCTTGC--------------------------------------------------------AGA---------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGCACA---GATCG---CAATGTGGCAA----ATCAAATAAATGATATGCAATCAAGGGTAAGTTTG-------------------------------------------ATCTAATTTGAATTCT------------------------------------------------A-------------------A-----------A--TAAATGGTTAT-----------------------------------------------------CAGATTTGTAA------------------------------------------TTAATATTTTTATAAACTTCATATTCCTATTCAACTAAACTAAAATCAAAAT-------------------------------------------------------------------------------------------------------------------------------------------TTTAGTTTAA--ACCACTTTTTCACA--------------------------------------------------------------------------------------------------------------------------------------------------AA------------------------------------------------------------------------------------------------------------------------------GT---------CAAATA------------------------------GTT--------------------------------------------------------------------CTTATATTTTTATACC-----------------------CGTTACTCGTAGAGT-----------------------AAA---------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AGCAATAGCGTTAA---GGTTAA-AGA--------------------------------------AG-------------------------------------------ATAGCACTGGAATTCGAGAACTCTGAATATTAAAAAATTATATTTTAATTTCTT------------------------------GTTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGATATTTACATTTTTTCTTATTTTTGTGATGATT---T--AATATGTAAGTAG-TAA-TGGCACTTAACTA---------AT----------------CAAAC--------------------------------------------TGGCTT-----------------------------------------------------------------------------------------------ACATTTTTATTATATC-----------------------CGTTACTCGTTGA-------------------------GTA---------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TATAATTAAATAA-------------------------------TTAAGTGCCTTT---------------------------AACTATAAATA--AAT--ATTAATTTAACA---------------------------------------------------------------------------------T-----------T--AAAAATATTAT------------------------------T---AAAATTAATAATATTAATTAATACTTGT--------------------------------------------------------------------------------------------ATTTATATTAATAT-ATTG-------------------TAT-------------TTTTGTAACAATTTCTGCTTAAAATG-------------------------------------------------------AGTTCGGTTTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------TGAATTACAATTTC-----TATATCAATTTACCGGTTC------------------------------------AGCAACG-----------------GGGATTCAAATCTGA----CT---T-------------------------------------------GT----------------------TATCCATTTTTATACC-----------------------CGTTACTCGAAGAGT-----------------------AAA---------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGGTTTTGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------------------------------------C........................................................................................................................................................................................................................................................................................................1611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGTTC------------------------------------AGCAACG-----------------GGGA...................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ATATTAT------------------------------T---AAAATTAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATACC-----------------------CGTTACTCGAAGAG......................................................2240.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACC-----------------------CGTTACTCGAAGAGT-----------------------..............................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACC-----------------------CGTTACTCGAAGAG......................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTTTATACC-----------------------CGTTACTCG...........................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droSim2
TATAAATAAA--------------------------------TAATATATATGTAGATATATGTACA-------------------------------------------ATA---------------------------------------------------------------------------------T-----------A--AATGATATTTC------------------------------A---AAAATTTTTTGTAGGTATTAAGATCTGTATTGAACG-------------------TTA---------------------------------------------------------------------------------------------AAAAATAAATATAAACCAATTTGCTTTATAAGACATTGTACTAAAAGTCCATTC-------------------------------------------------------ATT------------CCTTTCTT---------------------------------------------------------------------------------------------------------------AATACACA----------TATATTTCAAAAA--------------------------------------------------------------GAATTATGCTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAT-TTGTTACC-----------------------TTTTT-----------------------------------C---------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................TC------------------------------A---AAAATTTTTTGTAGGTATTAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...............................................................................................................................................................................................................................................................AAATTTTTTGTAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1580.25200000000002000000
droSec2
TACATGATTAT-------------------------------------------------A-------------AAAAGATTTATTTAATTG------------------ATT------------------------------------------TAATTTGTCGTTCCACAACA-------------------A-----------A--TAAATTGTTTT-AA------------AAGTATTTGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTAATTTTGTCATCAAAACA-------------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT----------------CATA-----------------------------------------------------AT--------TTTTGGTGAG-------------------------------------------------------------------------TATTCCTTTTTATACC-----------------------TTTTTCTTGTAGAGTAAACTATATACTAGATTCGTTGAAAA---------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CTTAGTGTTATTGGTCCTGCAGT-TT--------------------AAGCTTCTAAATGTGCATACAT--TGTT---------ATT--G-AAACTGGTTATAACTATC-------------------------------------------------------------------------------------------TAGAT--------------TT--------GAAGATTTAGATTTAGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTATTATGAAATGTAAGACTGCACATATT---TTGAGCTATTTTAGA-------C-------TTTTAAGGAGACC--TTTAAAATGCCAAAATTGG-----TA----TGCAAGTCTG-----------------------------------------------------------------------AC----------------CT--------------------------------TCTAGCGT-CTAAAGTGTCGTT-----------------------TCTGC------------------------------------------------------------------GTGCCGTTGTTATACC-----------------------CGTTACTCGTAGAGT-----------------------AAA---------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTATACC-----------------------CGTTACTCGTAGAG......................................................24200.05101000000000
droEre2
CCTATAACCGGAT--TCTACTGT-ATAT----AT----------------AAATATATATATATATAT-------------------------------------------------A------A----------------------------AA---------------------------------------T-----------A--T--------------------------ATATTAT-------ATGAATATATAATAAGATA----------------------------------------------------TATGAATATGT----------------------------------------GCATATTTATTAATGT-TTAGAAAAAAACTTAGG-----------------------------------------------------------------------------------------------TTTAATATA---------------------GA---------CAG---GTTTTA----------------------------------------------------------------------------------------------------------------------------------------------TTTTATTCTTCGAATTGT-------------------------------------------------------------------------------GCA-----------------------ACTATCGTATGAAAACGACGATCAT-------------------------------------------------------------------------------------------GAATAGTAGTTATACC-----------------------CGTTACTCGTAGAGA-----------------------AAT---------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 09:39 PM