ID:

dvi_22027

 Coordinate:

scaffold_179:561-711 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.8 -19.6 -19.5

Flybase annnotation

CDS [Dvir\GJ22504-cds]; exon [dvir_GLEANR_7827:2]; intron [Dvir\GJ22504-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1_DVirRCHelitron+
mature
  1. dvi_22027  scaffold_179:673-693 -
  2. scaffold_6412:390-410 +
  3. scaffold_10322:247337-247357 -
  4. scaffold_12736:154429-154449 -
  5. scaffold_12736:440743-440763 +
  6. scaffold_12855:6292492-6292512 +
  7. scaffold_12875:13072619-13072639 +
  8. scaffold_12928:4555778-4555798 -
  9. scaffold_12932:1033313-1033333 -
  10. scaffold_12954:631675-631695 +
  11. scaffold_12954:962739-962759 +
  12. scaffold_12958:194875-194895 +
  13. scaffold_12958:2832591-2832611 -
  14. scaffold_12970:3739167-3739187 +
  15. scaffold_13047:2628942-2628962 +
  16. scaffold_13047:4566327-4566347 +
  17. scaffold_13047:11437018-11437038 -
  18. scaffold_13049:24988761-24988781 +
  19. scaffold_13050:1114752-1114772 +
  20. scaffold_13324:111666-111686 -
  21. scaffold_12736:83919-83939 -
  22. scaffold_12875:16639261-16639281 -
  23. scaffold_12928:4726902-4726922 -
  24. scaffold_12936:110332-110352 -
  25. scaffold_12970:785678-785698 -
  26. scaffold_12970:1434936-1434956 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAGGAGATGCTTCCTTCTGCCTGTTACATACATTTGCATTTTGCACAAATACAATATACCTTTTTTACCCATTTTTAATGAGTTCAGGGTATAAAAACATATGATCAATACTTGATTAACTGTTACACATATTTTAGAAATAAGAGCCTTTTAATCTGCGTTGTCGTGTAATTATTTTTTTTTCCTTTCTTCGTCTTACAGAGAATGGTCCACCAAGGATGAGTCTAATCTATACATGATCTTTGATTATG
**************************************************....((((((((....((.((((...)))).))..))))))))........(((((((...)))))))...((((((((((...((((..(((((...))))).))))...))).))))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060670
9_testes_total
 M047
female body
 SRR060654
160x9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060657
140_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060684
140x9_0-2h_embryos_total
....................................................................CCATTTTTAATGAGTTCAGGG.................................................................................................................................................................. 21 0 20 0.30 6 3 2 0 0 0 0 0 0 1 0 0 0 0
....................................................................CCATTTTTAATGAGTTCAGGGT................................................................................................................................................................. 22 0 20 0.15 3 1 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................CCATTTTTAATGAGTTCAGGGTAT............................................................................................................................................................... 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 1 0 0 1
....................................................................CCATTTTTAATGAGTTCAGG................................................................................................................................................................... 20 0 20 0.10 2 0 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CACCAAGGATGAGTGTAT....................... 18 2 13 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.AGGAGATGCTTCCTTCTGCCTGTTAG................................................................................................................................................................................................................................ 26 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................CCATTTTTAATGAGTTCAGGGTATAAA............................................................................................................................................................ 27 0 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................CCTGTTACATACATTTGCATTTTGCAC............................................................................................................................................................................................................. 27 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................TACCCATTTTTAATGAGTTCAGGGT................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................CTGTTACATACATTTGCATTTTGCACC............................................................................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................TTACATACATTTGCATTTTGCACAA........................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................CCATTTTTAATGAGTTCAGGGTATAA............................................................................................................................................................. 26 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................TGCCTGTTACATACATTTGCAT.................................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................CTGTTACATACATTTGCATTTTGCACAA........................................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................TTACATACATTTGCATTTTGCAC............................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................TACATTTGCATTTTGCACAAATACAA..................................................................................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

ATCCTCTACGAAGGAAGACGGACAATGTATGTAAACGTAAAACGTGTTTATGTTATATGGAAAAAATGGGTAAAAATTACTCAAGTCCCATATTTTTGTATACTAGTTATGAACTAATTGACAATGTGTATAAAATCTTTATTCTCGGAAAATTAGACGCAACAGCACATTAATAAAAAAAAAGGAAAGAAGCAGAATGTCTCTTACCAGGTGGTTCCTACTCAGATTAGATATGTACTAGAAACTAATAC
**************************************************....((((((((....((.((((...)))).))..))))))))........(((((((...)))))))...((((((((((...((((..(((((...))))).))))...))).))))))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060672
9x160_females_carcasses_total
 SRR060681
Argx9_testes_total
 M047
female body
 V116
male body		 M028
head
 SRR060682
9x140_0-2h_embryos_total
 SRR060666
160_males_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 M027
male body		 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060674
9x140_ovaries_total
 GSM1528803
follicle cells		 SRR060673
9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060670
9_testes_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
.........................................................................................................................................................TAGACGCAATAGCAAATT................................................................................ 18 2 5 4.20 21 1 0 3 3 2 3 3 0 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TAGACGCAATAGCACATTG............................................................................... 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....CTACGAAGGAAGACGGACAATGTAT............................................................................................................................................................................................................................. 25 0 20 0.80 16 0 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GGAAGACGGACAATGTATGTAAACGT..................................................................................................................................................................................................................... 26 0 20 0.40 8 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................GTTATATGGAAAAAATGGGTAAAAATT............................................................................................................................................................................. 27 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TAGACGCAACAGCAAATTG............................................................................... 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TAGACGCAATAGCACAATG............................................................................... 19 3 11 0.27 3 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............AGACGGACAATGTATGTAAACGT..................................................................................................................................................................................................................... 23 0 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTAGACGCAATAGCAAATTG............................................................................... 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GAAGACGGACAATGTATGTAAACGT..................................................................................................................................................................................................................... 25 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............AAGACGGACAATGTATGTAA......................................................................................................................................................................................................................... 20 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.....CTACGAAGGAAGACGGACAATGTA.............................................................................................................................................................................................................................. 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.....CTACGAAGGAAGACGGACAATG................................................................................................................................................................................................................................ 22 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0
..............AAGACGGACAATGTATGTAAACGT..................................................................................................................................................................................................................... 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.................ACGGACAATGTATGTAAACGT..................................................................................................................................................................................................................... 21 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ACGAAGGAAGACGGACAATGT............................................................................................................................................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................AAAAAGGGAGGAAGCAGA....................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TAGACGCAATAGCAGATTG............................................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................AAAAAAATGGGTAAAAATT............................................................................................................................................................................. 19 1 19 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CCTCTACGAAGGAAGACGGA..................................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................TAGACGCAATAGCAAAGTA............................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CGGACAATGTATGTAAACGTAA................................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........GAAGGAAGACGGACAATGTATGTAA......................................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..CCTCTACGAAGGAAGACGGACA................................................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GACAATGTATGTAAACGTAAAA................................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................TAGACGCAATAGCAAATTT............................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TCCTCTACGAAGGAAGACGGACATT................................................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........AAGGAAGACGGACAATGTATGTAAACGT..................................................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................GGACAATGTATGTAAACGT..................................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....CTACGAAGGAAGACGGACAATGTATG............................................................................................................................................................................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........CGAAGGAAGACGGACAATGTAT............................................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_179:511-761 - dvi_22027 TA--------------------GGAGATGCTTCCTTCTGCCT---------GTTACATACATTTGCATTTTGCACAAATACAATATACCTTTTTTACCCATTTTTAATGAGTTCAGGGTATAAAAACATATGATCAA-------------------TAC------------------------------------TT------------------------------------------------------------------------------------------------------------------------GATTAACTGTTACACAT-------------------------------------------------------------------------------------------------A--TTTTAGA-------------------------------------------------AATAAG------------------AGCCTTTTAATCTG-CGTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGTAATTATTTTTTTTTCCTTTCTTCGTCTTACAGAGA--ATGGTCCACCA---------AG-----------------------------------------------------GAT---------GAGTCTA--------ATCTATACATGATCTTTGATTATG
droMoj3 scaffold_6500:24459834-24460047 - TC--------------------TGCCACGCCTCCTTCTGCCC---------GTTACATACTTTT-------TCACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCAGGGTATAAAAAA----AAA----------------------------------------------------------AACAA----------------------------------TATAT-ATTTATATATATCATAAAAAACT-TCTTTTGGTTTTTGCATTGTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTTTT------TTTTCTCATTTGCTGGCCTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-----TCACAGAAA--AGGCCG--------------CA--------------------------------------------CAATG----GG-----------------------------------------------CG
droGri2 scaffold_15245:5936832-5937063 + TTTTATGGTCAATATTCTCTTTAAAGACCTCTTCTTCTGCTG---------GAAGAA----T---------CAAAGAAATTACGAAG---------------------------------------------GC-AGCATTAATGAGATCAATATACGAATTGGGCTTTAACTTGGTTAATTTTTATTCGATATTGATCAAATTTTTTGCAGTTGATCAGAAATATGTCAAGGTAT-A---ATATGTATCAAAAACAAGCTTC------------T-----GCTT-TTAAAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG------------------------------CTATCGAA-----------------------------------------------------AA---------------------------------------------TCGA
droWil2 scf2_1100000004762:3539754-3539948 - TC--------------------GGAGATGCTTCCTTCTGCCT---------GTTACATACATTT-------TGGCGACTTTAATATACCATTTCA-CCC------TATGGGTGTATGGTATAAAAAG----GAA----------------------------------------------------------AACGT------------------------------------------------------------------------------------------------------------------------TCAAAATCGCTGAACGC-----------------------AT-------TTTCGCAGA------------------------------------------------------GCGTT--GTAATAATAA------------AAGTTGTTTTT--------------------------------------------------------------------------------------------------------------------------------CCTTTCTTTA------TTTTTTTTTTT-----------TTTGGTTTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------ATGTACCAAG-----------------------------------------------------GA---------------------------------------------TGAG
dp5 Unknown_group_156:55987-56224 - TC--------------------GGAAACGATTCCTTCTGGAC---------GGTACACACATCCACTTTTACCACAAATCTAATATACCCCAATA-CTCAT----TTTGAGTATCGGGTATAATTATTGA---TACC-------------------CAA------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------TAGTTTATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTCG------------AATCCAACAACAAATTTAAAGCTTT-----------TAATATTGTT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCC----AAACATTTTTGGCACCTATTTGTGTTC---------------------A----------------------------------------------AAATAA-AAAA--GAGA-AC---------TAGGTTA--------AACTTTAT--AATATTTTTTTGAT
droPer2 scaffold_43:495633-495860 - TC--------------------GGAAACGATTCCTTCTGGAC---------GTTACACACATCCACTTTCACCACAAATCTAATATACCCCAATA-CTCAT----TTTGAGTATCGGGTATAAAAAC----ACATTA-------------------CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAAAAC-----------------------ATCATTAGATTTCGAAAAGCAGCGGCAAAATTTAAAAAA-------------------------------------------------GAA---ATTAAATCTGC----------AAAAAAT---------------------------AAGTCACT------TTCC-------TCTTTTACTTC--AGAAATCCAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------------------------------------------------------AAACAAA----------GAC---------AAGTCA----------------------------AACCT
droAna3 scaffold_12911:1526814-1527058 - TC--------------------GGAGATGTCTCCTTCTTCTTGTCTCTTGCGTTGCAAACTTTT-------GACCAAAATCATAATACCCTC-------------TGC-----AAGGGTATAAAAAT----GGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA--------------------------------------------------------------------------------------GGA-----------A---------------------------------------------------------------------------------------------------------------------------------------------GTGTAATAGTCATTATTTTTTTTTATATAATTTT------GTAATATTTTT-----------GTTCGTAAA------------------------------------------------AAATTTATTGTATTAGTTATTTTGTTACAATCTTTTTTTTTTTTTAATTTACCC-------------------------------------------------------------T---------------------A----------------------------------------------AAACAA-TTAA--TAGA-GTCTCACGCATCCA----------------------GATCATCCTCTATT
droBip1 scf7180000394919:21814-22040 + TT--------------------TCGTAGGTCAGATTAA------------------------CT-------GACCAAAAATAGAATATGTAC---------------------------------------------------------------------TAAGTTTCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTATTTTCAAAAACA------------------------------------------------------------CGA-----------A--AGT--------------------------------TGGGTTATTTCCGATCGTTCAGTTATATGGCAGCTATAAGATATA------GG-------CGGCCGATCCTTATGAAAT------------T---------------------------------T-----------GGCAT------------------------------------------------------------------------------GAC----GTAATGT-----------------------------------------------------------------------------------------------------------------------TTTGCCA---------AAAATAGCTCTCATGTCAAATTTTAACTCTCTAACTCTAAAAACA----------CAA---------A---------------------------AGTTATACCAT
droKik1 scf7180000302405:551088-551334 - TC--------------------GGAAAGGTCTCCTTCACTGC---------GTTGCAAACTTCT-------GACTGAAATTATAATACCCTG---------------C-----AAGGGTATAAATAT----AAACTG-------------------TAT------------------------------------A-------------------------------------CCCCCTT----------------------------------------------------------------------------------------------------------------------------------------CAATGATACCATTTAAAAACTATTTTGCCCAACACA-----GTCCGTTTCATAGTCAT--ACAATTAT----------------------------------------------GATTCG------------------AACTTTTTGCTCTT-CGTTT---------------------------------------------------------------TAGTATTTTG------TTGTCTTTATT--------------------------------------------------TTTA--------------------------------------------------------------------------------------------------------------------------GGTTTTCTCATTGCATA-------------ATTTATCAAT--------------------------------------------TAATT----GAT---------TAGTTTA--------AT------------------TTAT
droFic1 scf7180000453215:223520-223748 - TC--------------------TGAGGTGTCTCCTTCATTGC---------GTTGCAAACTTTT-------GACTGAAATTATAATACGCT-TTG-CTC------TGCA-----AGGGTATAAAAAT----GAACAA-------------------TAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATTGTTGA-------------------------------------------------------------------------------------------------------------------------------------------------TACAAGCACCT-------------------------------------------------CCGCTCACAGATCTGTAAAATA-----------AAGTATTTTT-TAGAAATAAATT-TTAGTGTAAATATTTTG-----------ATTCGTTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAA------------ATGTACCAAG------------------------------------AAAAAA-------------------------GTAT---------AGTTTTAAGTGATCTTTGCTTGTT
droEle1 scf7180000491354:7598-7800 - TC--------------------GGAGATGTCTCCTTCACTGC---------GTTGCAAAATTCT-------AACTGAAATTATAATACCCTC-------------TGC-----AAGGGTATAAAAAT----AAT----------------AATA--CAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT----------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTAATTTATATAATTCAACCGAATTTCAACCGAATTTTAATTTGAGGTGACACGGAAACGTGTGTTTATTCTTTGATAGACTTATAGAATAA------------GTTTAGCAAG--------------------------------------------A--------AA--------------------------------------------TGAAT
droRho1 scf7180000773292:9911-10154 - TC--------------------GGAAACGCTTCCTTCTAGCT---------GTTACATACTTTT-------GCACGAATACAATATACCCTTTTA-CTC------TACGAGTAACGGGTATAAATAT----ACC----------------------TAG------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------TCATTGATTTAAACAGCGAATTCGAAATATAGATTTTTTAAATGTTCGTTTA------------A-------------------------------------------------------------------------------------------------ACTTTTCG--GCTTGCTCTCTTCCTTTCCTTTCAAACTGTTTGTTTAATATGGAATAT-----------------------------------------------------------------------------------------------------------------------TTTAGTT---------CAGT-----------------------------------------------------T---------GGGTATA--------ATATTTTAATTATTATCTTTTGTT
droBia1 scf7180000302069:1358197-1358374 - TC--------------------GAAAACGCTTCCTTCTACCT---------GTTACATACTTTC-------CGACGAATATAGT-TACCCTTTTA-CTC------TACGAGCAACGGGTATAAAAAT----GTTAAA-------------------TAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------AAACTTGTTGACTTTCAAA----------------------------------------------------------------------------GTATT--TCAGTTTGAA------------AAGCTTAGGTTTGGGTTGTTG---------------------------AATTCATT------TTGC-------TC---------------------------------------------------------------------------------------------------------------------------------------TTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCT----AA----------------------------------------------------------TATT
droTak1 scf7180000415703:118326-118555 - TC--------------------GGAAACGCTTCCTTCTCCCT---------GTTACATACTTTT-------GCACGAATACAATATACCCTTTTA-CTC------TTCGAGTAACGGGTATAACTAT----AAACTA-------------------TAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACCTTTTGATCTTCAAG---------------------------------------------------------------------------------------------------------------------------------------GATCTAAAAAG-----------------------------------------------------------------------TATGTGGAATATTTTGAATTTGTTTTTAAATTTATTT------TTTAAATATTT-----------GTTAGTTTAAC--------------------------------CAACTGT---------------------------------------------------------------------------------------------------------------------------------------------------ATGCCAAT--------------------------------TCCC----AA--------------------------TATT--------ATATTTATATAAT-TTTAATAATG
droEug1 scf7180000409462:1909940-1910179 - TC--------------------GGAAACGCTTTCTTCTACCT---------GTTACATACTTTT-------CAACGAATCTAATATACCCTTTTA-CTC------TACGAGTAACGGGTATAACTAT----GAGTCA-------------------TAT------------------------------------AT------------------------------------------------------------------------------------------------------------------------TGTAAACCGTTTTACAT-------------------------------------------------------------------------------------------------A--TTATTAT-------------------------------------------------AATGA-------------ATTTTTAATTTTTTAATCATCAGTTTA------------C---------------------------------------------------ATTATTTA------TTGC-----------------------------------A-------------ACATTTTCTTTAAATTTCCTTACTTA----AGAATAT-----------------------------------------------------------------------------------------------------------------------TTTATTA---------AAGTTAATTTTTATCCTAGACT---------------------------------------------------------------------TGCATT---TTCATT
dm3 chr2L:21682803-21682990 - TT--------------------GGAAACGCTTCCTTCTGCCT---------GTTACATACCATT-------CAACGAACAAACGATATCCTTATA-CTC------TACGAGTAGCGGGTATAATGAA----T-------------------------------------------------------------------------------------------------------------------ACCAAAAACACTT-ACGCCATGACCTTCCACCGCATTTTTTACAAATTTTGAAACTTCTTGTCG------------------------------------------------------------------------------------------------------------------------------------GAA------------AATTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------CGGATCTCTTGATTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG-----------------------------------------------------------------------------------------------------------------------T------------------TTTA
droSim2 x:20581179-20581398 - TC--------------------GGAAACGTTTTTTTCTACCT---------GGTACATACTTAT-------AAACGAATATGGTATACACTTTTA-CTC------TACGAATAACGGGTATTAAAAT----TGG----------------GATG--CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAGTT-ATGGGCGGACG------------G-------------------------------------------------------------------------------------------------ACATGGCGTAATTGACTCTGCTTTTTACTTATGATCCTCTT------------------------------------------------------------------------------------------------------------------GATCGTAATACAGAAA--GTGGCG---T-----------------------------------------------------------------------ACGCTTGAAGAGGAGATCTTTAGTTACATCTGATTT---TTGATT
droSec2 scaffold_28:739104-739271 - TC--------------------GGAAACGCTTCATTCTGCCTACT---TCCTTTGCACACTTAT-------TAACAAATCTAGTATACCCTTTTA-TTC------TACGAGTAACGGGTATAATAAA----TCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATCAGTTTACCAGGAG----------------------------------TAATTAC-----T--AT------------TAAATAGAAACCGTTTACACTGCACATAATCTTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGCATTTT
droYak3 v2_chrUn_004:432962-433184 - TC--------------------GGAAACCCTTCCTTCTGCCT---------GTTACATACTTTT-------CAACGAATCTAGTATACCCTTTTA-CTC------TACGAGTAACGGGTATAAATAT----GGA----------------------------------------------------------AACT-----------------------------------------------------------------------------------------------------------TTTTATTGCAACTTA--TTATTGATGCA--------------------------------------------------------------------------------------CGA-----------A--GTGCGGA-------------------------------------------------CATAAGCACCG---AAGAATCATT------GT-------CGTCTTATATTTTTCACAC------------G---------------------------------T-----------CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGA--ATACTCTAATG---------AA-----------------------------------------------------AAC---------TATTCTA--------ATATA-AAATCATAT-----TTGA
droEre2 scaffold_4770:2615267-2615435 - TC--------------------GGAAACGCTTCCTTCTGCCT---------GTTACATACTTTC-------CAACGAAT-CAGTATACCCTTTTA-CTT------TACGAGTAACGGGTATAATTACAGC---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCAC-----------------------AT-------TTTCCCAAG----------------------------------ACAATCAC-----TTTATTGGGC-------CGACTAAAAGTCGTTT------------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGACT--------------------------------------------------T----------TCTTTTAAC---TATT-TTATCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TA--------------------GGAGATGCTTCCTTCTGCCT---------GTTACATACATTTGCATTTTGCACAAATACAATATACCTTTTTTACCCATTTTTAATGAGTTCAGGGTATAAAAACATATGATCAA-------------------TAC------------------------------------TT------------------------------------------------------------------------------------------------------------------------GATTAACTGTTACACAT-------------------------------------------------------------------------------------------------A--TTTTAGA-------------------------------------------------AATAAG------------------AGCCTTTTAATCTG-CGTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTGTAATTATTTTTTTTTCCTTTCTTCGTCTTACAGAGA--ATGGTCCACCA---------AG-----------------------------------------------------GAT---------GAGTCTA--------ATCTATACATGATCTTTGATTATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................CCATTTTTAATGAGTTCAGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.306000000010000000000000000000032000000000000000000000000000000000
.................................................................................................CCATTTTTAATGAGTTCAGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153000001000000000000000000000011000000000000000000000000000000000
.................................................................................................CCATTTTTAATGAGTTCAGGGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000000000000010000000000000000000010000000000000000000000000000
.................................................................................................CCATTTTTAATGAGTTCAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000000000000000000000000000001100000000000000000000000000000000
.A--------------------GGAGATGCTTCCTTCTGCCT---------GTTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26150.071000000000000000000001000000000000000000000000000000000000000000
.................................................................................................CCATTTTTAATGAGTTCAGGGTATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27180.061000000000000000000000000000000100000000000000000000000000000000
.......................................CCT---------GTTACATACATTTGCATTTTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010000000000000000000000000000000000000000000000000000000000
..............................................................................................TACCCATTTTTAATGAGTTCAGGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
........................................CT---------GTTACATACATTTGCATTTTGCACC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
....................................................TTACATACATTTGCATTTTGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000100000000000000000000000000000000
.................................................................................................CCATTTTTAATGAGTTCAGGGTATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.....................................TGCCT---------GTTACATACATTTGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
........................................CT---------GTTACATACATTTGCATTTTGCACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000001000000000000000000000000000000000
....................................................TTACATACATTTGCATTTTGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
.........................................................TACATTTGCATTTTGCACAAATACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
droMoj3
TC--------------------TGCCACGCCTCCTTCTGCCC---------GTTACATACTTTT-------TCACAAAACCATTATACCCTGATTTCCCATTTTCAATGGGTTCAGGGTATAAAAAA----AAA----------------------------------------------------------AACAA----------------------------------TATAT-ATTTATATATATCATAAAAAACT-TCTTTTGGTTTTTGCATTGTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------AAATATTTTT------TTTTCTCATTTGCTGGCCTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-----TCACAGAAA--AGGCCG--------------CA--------------------------------------------CAATG----GG-----------------------------------------------CGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTTATGGTCAATATTCTCTTTAAAGACCTCTTCTTCTGCTG---------GAAGAA----T---------CAAAGAAATTACGAAG---------------------------------------------GC-AGCATTAATGAGATCAATATACGAATTGGGCTTTAACTTGGTTAATTTTTATTCGATATTGATCAAATTTTTTGCAGTTGATCAGAAATATGTCAAGGTAT-A---ATATGTATCAAAAACAAGCTTC------------T-----GCTT-TTAAAAATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGCTTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG------------------------------CTATCGAA-----------------------------------------------------AA---------------------------------------------TCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TC--------------------GGAGATGCTTCCTTCTGCCT---------GTTACATACATTT-------TGGCGACTTTAATATACCATTTCA-CCC------TATGGGTGTATGGTATAAAAAG----GAA----------------------------------------------------------AACGT------------------------------------------------------------------------------------------------------------------------TCAAAATCGCTGAACGC-----------------------AT-------TTTCGCAGA------------------------------------------------------GCGTT--GTAATAATAA------------AAGTTGTTTTT--------------------------------------------------------------------------------------------------------------------------------CCTTTCTTTA------TTTTTTTTTTT-----------TTTGGTTTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------ATGTACCAAG-----------------------------------------------------GA---------------------------------------------TGAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.C--------------------GGAGATGCTTCCTTCTGCCT---------GTTACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
...........................................................................GACTTTAATATACCATTTCA-CCC------TAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
dp5
TC--------------------GGAAACGATTCCTTCTGGAC---------GGTACACACATCCACTTTTACCACAAATCTAATATACCCCAATA-CTCAT----TTTGAGTATCGGGTATAATTATTGA---TACC-------------------CAA------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------TAGTTTATTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTCG------------AATCCAACAACAAATTTAAAGCTTT-----------TAATATTGTT-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATGCC----AAACATTTTTGGCACCTATTTGTGTTC---------------------A----------------------------------------------AAATAA-AAAA--GAGA-AC---------TAGGTTA--------AACTTTAT--AATATTTTTTTGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................TTACCACAAATCTAATATACCCCAATA-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................282050.8510170010170000000
TC--------------------GGAAACGATTCCTTCTGGAC---------GGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2641.5060000000150
TC--------------------GGAAACGATTCCTTCTGGAC---------GGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.8040000000040
TC--------------------GGAAACGATTCCTTCTGGAC---------GG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.6030110000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------AAATAA-AAAA--GAGA-AC---------TAGG...................................2130.3310100000000
...........................CGATTCCTTCTGGAC---------GGTACACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.2510100000000
.C--------------------GGAAACGATTCCTTCTGGAC---------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000030
............................................................................AATCTAATATACCCCAATA-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020200000000
...................................................................................................AT----TTTGAGTATCGGGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020200000000
..................................................................TTTTACCACAAATCTAATATACCCCAATA-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................30200.1020000000020
.........................................C---------GGTACACACATCCACTTTTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.0810000010000
..................................................................TTTTACCACAAATCTAATATACCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510010000000
.............................................................................................TA-CTCAT----TTTGAGTATCGGGTATAATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
.....................................................................TACCACAAATCTAATATACCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510001000000
droPer2
TC--------------------GGAAACGATTCCTTCTGGAC---------GTTACACACATCCACTTTCACCACAAATCTAATATACCCCAATA-CTCAT----TTTGAGTATCGGGTATAAAAAC----ACATTA-------------------CAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAAAAC-----------------------ATCATTAGATTTCGAAAAGCAGCGGCAAAATTTAAAAAA-------------------------------------------------GAA---ATTAAATCTGC----------AAAAAAT---------------------------AAGTCACT------TTCC-------TCTTTTACTTC--AGAAATCCAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-----------------------------------------------------------------AAACAAA----------GAC---------AAGTCA----------------------------AACCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................AGATTTCGAAAAGCAGCGGCAAAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.331010000
..................................................................TTTCACCACAAATCTAATATACCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.102020000
.....................................................TACACACATCCACTTTCACCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droAna3
TC--------------------GGAGATGTCTCCTTCTTCTTGTCTCTTGCGTTGCAAACTTTT-------GACCAAAATCATAATACCCTC-------------TGC-----AAGGGTATAAAAAT----GGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA--------------------------------------------------------------------------------------GGA-----------A---------------------------------------------------------------------------------------------------------------------------------------------GTGTAATAGTCATTATTTTTTTTTATATAATTTT------GTAATATTTTT-----------GTTCGTAAA------------------------------------------------AAATTTATTGTATTAGTTATTTTGTTACAATCTTTTTTTTTTTTTAATTTACCC-------------------------------------------------------------T---------------------A----------------------------------------------AAACAA-TTAA--TAGA-GTCTCACGCATCCA----------------------GATCATCCTCTATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................TT-------GACCAAAATCATAATACCCTC-------------TGC-----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102020000
...........................................................................AAAATCATAATACCCTC-------------TGC-----AAGGGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
..............................................................TT-------GACCAAAATCATAATACCCTC-------------TGC-----A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
droBip1
TT--------------------TCGTAGGTCAGATTAA------------------------CT-------GACCAAAAATAGAATATGTAC---------------------------------------------------------------------TAAGTTTCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTATTTTCAAAAACA------------------------------------------------------------CGA-----------A--AGT--------------------------------TGGGTTATTTCCGATCGTTCAGTTATATGGCAGCTATAAGATATA------GG-------CGGCCGATCCTTATGAAAT------------T---------------------------------T-----------GGCAT------------------------------------------------------------------------------GAC----GTAATGT-----------------------------------------------------------------------------------------------------------------------TTTGCCA---------AAAATAGCTCTCATGTCAAATTTTAACTCTCTAACTCTAAAAACA----------CAA---------A---------------------------AGTTATACCATSizeHit CountTotal NormTotal
No Reads
droKik1
TC--------------------GGAAAGGTCTCCTTCACTGC---------GTTGCAAACTTCT-------GACTGAAATTATAATACCCTG---------------C-----AAGGGTATAAATAT----AAACTG-------------------TAT------------------------------------A-------------------------------------CCCCCTT----------------------------------------------------------------------------------------------------------------------------------------CAATGATACCATTTAAAAACTATTTTGCCCAACACA-----GTCCGTTTCATAGTCAT--ACAATTAT----------------------------------------------GATTCG------------------AACTTTTTGCTCTT-CGTTT---------------------------------------------------------------TAGTATTTTG------TTGTCTTTATT--------------------------------------------------TTTA--------------------------------------------------------------------------------------------------------------------------GGTTTTCTCATTGCATA-------------ATTTATCAAT--------------------------------------------TAATT----GAT---------TAGTTTA--------AT------------------TTATSizeHit CountTotal NormTotal
No Reads
droFic1
TC--------------------TGAGGTGTCTCCTTCATTGC---------GTTGCAAACTTTT-------GACTGAAATTATAATACGCT-TTG-CTC------TGCA-----AGGGTATAAAAAT----GAACAA-------------------TAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATTGTTGA-------------------------------------------------------------------------------------------------------------------------------------------------TACAAGCACCT-------------------------------------------------CCGCTCACAGATCTGTAAAATA-----------AAGTATTTTT-TAGAAATAAATT-TTAGTGTAAATATTTTG-----------ATTCGTTTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAA------------ATGTACCAAG------------------------------------AAAAAA-------------------------GTAT---------AGTTTTAAGTGATCTTTGCTTGTTSizeHit CountTotal NormTotal
No Reads
droEle1
TC--------------------GGAGATGTCTCCTTCACTGC---------GTTGCAAAATTCT-------AACTGAAATTATAATACCCTC-------------TGC-----AAGGGTATAAAAAT----AAT----------------AATA--CAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAT----------------------------------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTAATTTATATAATTCAACCGAATTTCAACCGAATTTTAATTTGAGGTGACACGGAAACGTGTGTTTATTCTTTGATAGACTTATAGAATAA------------GTTTAGCAAG--------------------------------------------A--------AA--------------------------------------------TGAATSizeHit CountTotal NormTotal
No Reads
droRho1
TC--------------------GGAAACGCTTCCTTCTAGCT---------GTTACATACTTTT-------GCACGAATACAATATACCCTTTTA-CTC------TACGAGTAACGGGTATAAATAT----ACC----------------------TAG------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------TCATTGATTTAAACAGCGAATTCGAAATATAGATTTTTTAAATGTTCGTTTA------------A-------------------------------------------------------------------------------------------------ACTTTTCG--GCTTGCTCTCTTCCTTTCCTTTCAAACTGTTTGTTTAATATGGAATAT-----------------------------------------------------------------------------------------------------------------------TTTAGTT---------CAGT-----------------------------------------------------T---------GGGTATA--------ATATTTTAATTATTATCTTTTGTTSizeHit CountTotal NormTotal
No Reads
droBia1
TC--------------------GAAAACGCTTCCTTCTACCT---------GTTACATACTTTC-------CGACGAATATAGT-TACCCTTTTA-CTC------TACGAGCAACGGGTATAAAAAT----GTTAAA-------------------TAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CA------AAACTTGTTGACTTTCAAA----------------------------------------------------------------------------GTATT--TCAGTTTGAA------------AAGCTTAGGTTTGGGTTGTTG---------------------------AATTCATT------TTGC-------TC---------------------------------------------------------------------------------------------------------------------------------------TTTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCT----AA----------------------------------------------------------TATTSizeHit CountTotal NormTotal
No Reads
droTak1
TC--------------------GGAAACGCTTCCTTCTCCCT---------GTTACATACTTTT-------GCACGAATACAATATACCCTTTTA-CTC------TTCGAGTAACGGGTATAACTAT----AAACTA-------------------TAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACCTTTTGATCTTCAAG---------------------------------------------------------------------------------------------------------------------------------------GATCTAAAAAG-----------------------------------------------------------------------TATGTGGAATATTTTGAATTTGTTTTTAAATTTATTT------TTTAAATATTT-----------GTTAGTTTAAC--------------------------------CAACTGT---------------------------------------------------------------------------------------------------------------------------------------------------ATGCCAAT--------------------------------TCCC----AA--------------------------TATT--------ATATTTATATAAT-TTTAATAATGSizeHit CountTotal NormTotal
No Reads
droEug1
TC--------------------GGAAACGCTTTCTTCTACCT---------GTTACATACTTTT-------CAACGAATCTAATATACCCTTTTA-CTC------TACGAGTAACGGGTATAACTAT----GAGTCA-------------------TAT------------------------------------AT------------------------------------------------------------------------------------------------------------------------TGTAAACCGTTTTACAT-------------------------------------------------------------------------------------------------A--TTATTAT-------------------------------------------------AATGA-------------ATTTTTAATTTTTTAATCATCAGTTTA------------C---------------------------------------------------ATTATTTA------TTGC-----------------------------------A-------------ACATTTTCTTTAAATTTCCTTACTTA----AGAATAT-----------------------------------------------------------------------------------------------------------------------TTTATTA---------AAGTTAATTTTTATCCTAGACT---------------------------------------------------------------------TGCATT---TTCATTSizeHit CountTotal NormTotal
No Reads
dm3
TT--------------------GGAAACGCTTCCTTCTGCCT---------GTTACATACCATT-------CAACGAACAAACGATATCCTTATA-CTC------TACGAGTAGCGGGTATAATGAA----T-------------------------------------------------------------------------------------------------------------------ACCAAAAACACTT-ACGCCATGACCTTCCACCGCATTTTTTACAAATTTTGAAACTTCTTGTCG------------------------------------------------------------------------------------------------------------------------------------GAA------------AATTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------CGGATCTCTTGATTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG-----------------------------------------------------------------------------------------------------------------------T------------------TTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................CATT-------CAACGAACAAACGATATCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TCTTGTCG------------------------------------------------------------------------------------------------------------------------------------GAA------------AATTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------CGGA...................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................CATT-------CAACGAACAAACGATATCCTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AATTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------CGGATCTCTTGAT..........................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................ATTTTGAAACTTCTTGTCG------------------------------------------------------------------------------------------------------------------------------------GAA------------AATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................T-------------------------------------------------------------------------------------------------------------------ACCAAAAACACTT-ACGCCATGACCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------CGGATCTCTTGATTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG-----------------------------------------------------------------------------------------------------------------------T------------------T...2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTGTCG------------------------------------------------------------------------------------------------------------------------------------GAA------------AATTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------CGGATCTCTTGATTTTT......................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TAATGAA----T-------------------------------------------------------------------------------------------------------------------ACCAAAAACACTT-ACGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................CATT-------CAACGAACAAACGATATCCTTAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------CGGATCTCTTGATTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG-----------------------------------------------------------------------------------------------------------------------T------------------....2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................TTATA-CTC------TACGAGTAGCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------CGGATCTCTTGAT..........................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCTTCCTTCTGCCT---------GTTACATACCATT-------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................TTCTTGTCG------------------------------------------------------------------------------------------------------------------------------------GAA------------AATTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------CGG....................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TAATGAA----T-------------------------------------------------------------------------------------------------------------------ACCAAAAACACTT-ACGCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AATTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------CGGATCTCTTGA...........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GCTTCCTTCTGCCT---------GTTACATACCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TCCACCGCATTTTTTACAAATTTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TTCTGCCT---------GTTACATACCATT-------CAACGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AACTTCTTGTCG------------------------------------------------------------------------------------------------------------------------------------GAA------------AATTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TT-------CAACGAACAAACGATATCCTTATA-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------AATTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------CGGATCTCTTGATT.........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................CAAACGATATCCTTATA-CTC------TACGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CTTCTGCCT---------GTTACATACCATT-------CAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TCTTGTCG------------------------------------------------------------------------------------------------------------------------------------GAA------------AATTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------CGG....................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................TTTGAAACTTCTTGTCG------------------------------------------------------------------------------------------------------------------------------------GAA------------AATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TA-CTC------TACGAGTAGCGGGTATAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................................................CAAACGATATCCTTATA-CTC------TACGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AAAAACACTT-ACGCCATGACCTTCCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTCCTTCTGCCT---------GTTACATACCATT-------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TTGTCG------------------------------------------------------------------------------------------------------------------------------------GAA------------AATTTGACTTT----------------------------------------------------------------------------------------------------------------------------------------------------CGGA...................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CGCTTCCTTCTGCCT---------GTTACATACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TTCCACCGCATTTTTTACAAATTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................CATT-------CAACGAACAAACGATATCCTTATA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AACGAACAAACGATATCCTTATA-CTC------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CTTCTGCCT---------GTTACATACCATT-------CAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TACAAATTTTGAAACTTCTTGTCG------------------------------------------------------------------------------------------------------------------------------------GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TCCTTCTGCCT---------GTTACATACCATT-------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................ACCGCATTTTTTACAAATTTTGAAACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TCTGCCT---------GTTACATACCATT-------CAACGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----------------------------------------------------------------------------------------------------------------------------------------------------CGGATCTCTTGATTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG-----------------------------------------------------------------------------------------------------------------------T------------------....2511.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................T---------GTTACATACCATT-------CAACGAACAAACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------------------------------------------------------------------------------------------------------------------------------------------CGGATCTCTTGATTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------T................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................T-------------------------------------------------------------------------------------------------------------------ACCAAAAACACTT-ACGCCATGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TACCATT-------CAACGAACAAACGATATCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TTGAAACTTCTTGTCG------------------------------------------------------------------------------------------------------------------------------------GAA------------AATTTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ATT-------CAACGAACAAACGATATCCTTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTCCTTCTGCCT---------GTTACATACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CGCTTCCTTCTGCCT---------GTTACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TT--------------------GGAAACGCTTCCTTCTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTGATTTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------TCC-----------------------------------------------------------------------------------------------------------------------G------------------....18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTCCTTCTGCCT---------GTTACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AACGCTTCCTTCTGCCT---------GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................ACGCTTCCTTCTGCCT---------GTTACATAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GAAACGCTTCCTTCTGCCT---------GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TCCTTCTGCCT---------GTTACATAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AACGCTTCCTTCTGCCT---------GTTACATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CTTCCTTCTGCCT---------GTTACATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AACGCTTCCTTCTGCCT---------GTTACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TC--------------------GGAAACGTTTTTTTCTACCT---------GGTACATACTTAT-------AAACGAATATGGTATACACTTTTA-CTC------TACGAATAACGGGTATTAAAAT----TGG----------------GATG--CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAGTT-ATGGGCGGACG------------G-------------------------------------------------------------------------------------------------ACATGGCGTAATTGACTCTGCTTTTTACTTATGATCCTCTT------------------------------------------------------------------------------------------------------------------GATCGTAATACAGAAA--GTGGCG---T-----------------------------------------------------------------------ACGCTTGAAGAGGAGATCTTTAGTTACATCTGATTT---TTGATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................TATGGTATACACTTTTA-CTC------TACGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.00500000010400000000
.........................................................................................................TACGAATAACGGGTATTAAAAT----TGG----------------GA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300000030000000000
...................................................................................................................................TGG----------------GATG--CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAGTT-ATGGGCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300000021000000000
..................................TTCTACCT---------GGTACATACTTAT-------AAACGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000000200000000
................................................................................TGGTATACACTTTTA-CTC------TACGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
....................................................................................................................................GG----------------GATG--CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAGTT-ATGGGCGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------ACGCTTGAAGAGGAGATCTTTAGT.....................2511.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGATCCTCTT------------------------------------------------------------------------------------------------------------------GATCGTAA........................................................................................................................................2011.00100000000001000000
........................................................................................................................................................TG--CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTAGTT-ATGGGCGGACG------------G-------------------------------------------------------------------------------------------------AC.........................................................................................................................................................................................................................................................................................................2711.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAGGAGATCTTTAGTTACATC...............2511.00100000000001000000
.....................................TACCT---------GGTACATACTTAT-------AAACGAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------------------------------------------------------------------------------------------------------------------GATCGTAATACAGAAA--GTGGCG---T-----------------------------------------------------------------------A............................................2611.00100000010000000000
droSec2
TC--------------------GGAAACGCTTCATTCTGCCTACT---TCCTTTGCACACTTAT-------TAACAAATCTAGTATACCCTTTTA-TTC------TACGAGTAACGGGTATAATAAA----TCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATCAGTTTACCAGGAG----------------------------------TAATTAC-----T--AT------------TAAATAGAAACCGTTTACACTGCACATAATCTTGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTGCATTTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................TTTTA-TTC------TACGAGTAACGGGTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23120.0811000
droYak3
TC--------------------GGAAACCCTTCCTTCTGCCT---------GTTACATACTTTT-------CAACGAATCTAGTATACCCTTTTA-CTC------TACGAGTAACGGGTATAAATAT----GGA----------------------------------------------------------AACT-----------------------------------------------------------------------------------------------------------TTTTATTGCAACTTA--TTATTGATGCA--------------------------------------------------------------------------------------CGA-----------A--GTGCGGA-------------------------------------------------CATAAGCACCG---AAGAATCATT------GT-------CGTCTTATATTTTTCACAC------------G---------------------------------T-----------CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGA--ATACTCTAATG---------AA-----------------------------------------------------AAC---------TATTCTA--------ATATA-AAATCATAT-----TTGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTTCACAC------------G---------------------------------T-----------CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT..................................................................................................................................22200.25505000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCACCG---AAGAATCATT------GT-------CGTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................2670.14101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATT------GT-------CGTCTTATATTTT..................................................................................................................................................................................................................................................................................................................................................................................................................2170.14100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCACCG---AAGAATCATT------GT-------CGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2570.14100100000000
...........................................................................................................................ATAT----GGA----------------------------------------------------------AACT-----------------------------------------------------------------------------------------------------------TTTTATTGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.14100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCACCG---AAGAATCATT------GT-------C..............................................................................................................................................................................................................................................................................................................................................................................................................................22200.10202000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATATTTTTCACAC------------G---------------------------------T-----------CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT..................................................................................................................................26200.10202000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGA--ATACTCTAATG---------AA-----------------------------------------------------AAC---------TATTC..................................26200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTTTTCACAC------------G---------------------------------T-----------CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G....................................................................................................................................22200.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATATTTTTCACAC------------G---------------------------------T-----------CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCC..................................................................................................................................27200.05100100000000
.........................................................................................................................................................................................................................................................................................................................................CA--------------------------------------------------------------------------------------CGA-----------A--GTGCGGA-------------------------------------------------CATAAGCACCG---AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTATATTTTTCACAC------------G---------------------------------T-----------CG................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAAGCACCG---AAGAATCATT------GT-------C..............................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAC------------G---------------------------------T-----------CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGA--ATACTCTAATG---------..........................................................................................................27200.05100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------------------------------------------------CATAAGCACCG---AAGAATCATT------GT-------C..............................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATTTTTCACAC------------G---------------------------------T-----------CGCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCT..................................................................................................................................25200.05101000000000
..................................................................................................C------TACGAGTAACGGGTATAAATAT----.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--ATACTCTAATG---------AA-----------------------------------------------------AAC---------TATTCTA--------ATA.....................28200.05101000000000
droEre2
TC--------------------GGAAACGCTTCCTTCTGCCT---------GTTACATACTTTC-------CAACGAAT-CAGTATACCCTTTTA-CTT------TACGAGTAACGGGTATAATTACAGC---T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACCAC-----------------------AT-------TTTCCCAAG----------------------------------ACAATCAC-----TTTATTGGGC-------CGACTAAAAGTCGTTT------------GT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATAGACT--------------------------------------------------T----------TCTTTTAAC---TATT-TTATCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/16/2015 at 11:30 PM