dvi_22008

Name	Class	Family	Strand
Helitron-1N1_DVir	RC	Helitron	+

Species	Coordinate	ID	Alignment
droVir3	scaffold_13052:793772-794022 +	dvi_22008	ATTGATCA--AGGCGAGAAATTTAAAAGCC---------AAGGATATCAACGGAAA---------------------------------------------------GTCAGGTAA------------------------------------------------------ATC------AAATCAAATCAAAA-----A----------------------------------------------------------------------GA---TG-----AG---------T------------------------------------TTTCTTT-TTATACCCTAAACCCATTAAAAATGGG-TATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATAT----ATTCT----------------------------------GTCCGCCCGTCCGTCCGTA----TGTATGAACGCAAGGATCTCAGAACCTATAA
droMoj3	scaffold_6680:21125019-21125223 +		TGTTAAAG---------AAA----------------------------------AG---------------------------------------------------ATCGAATAATA--------------------------------------------------------AAG------TATCCC---------------------------------------------------------------------------------AAAATTTGGAG-------------------------------------------------TGTTTT-TTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATACTGGTTTTGT-G-------AAAGGTATGTAACAGGTAGAAGGAATCATCGCAAGCGCCATAAAGTATATAT----ATTCTT---------------------------------GTCCGTCTGTCC----GTA----TGTTTTAACGCGTCGATCTCAGAAGATATAA
droGri2	scaffold_15110:24412725-24413012 -		GTTACCGA--------G--ATTTAAATGAA---------AA---------------------------------------TCGATAATCGAATGACACCAACAAATAATATGATAATA----------------------------------------------------------------TTGA------A--------AGA--TAA----------------------------TACATAT----------------------------------------------------ATAATAT--------------------------CGCATTT-TTATACCCAGAATCCATTAAAAATGGG-TCAAAGGGTATAATGGTTTTGTGA-------TAATGTATGTAACAGGCAGAAGGAAGCATCTCCAACCCCATAAAGTATATATGTATATTCTTGATCAGGGTCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCCGTC----TGTCTGAACACGTAGATCTCAGAGACTATAA
droWil2	scf2_1100000004510:31848-32106 -		ATTTCA----ACGCTGAAAACTTA------TTGT----------------------------------------------------------------------------------GGATTACAAGTCTAAAATATAAAAAAAAGGAAGACAAAGCC-------------ATA-AAGTAGAATACAAACAAA----------------A-------------------------------A---------------------------AGA--ATG-----------------------------------------------------CTTATTT-TTATACCATGCACTTAT------AGGA-TGAAATGGTATATTAAATTCGTCA-------AAATGTATGTAACAGGCAAAA------ATCTCCGACCCCATAAAGTCG--------------------------GATCGAAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTC----TGTATTCACACGCAGATCTCGGAGACTATAA
dp5	Unknown_singleton_1491:27417-27699 +		ATTGTCCA--------GCAATTTGAGATGGTTGTAGATGAATAACAACAATAGTTA---------------------------------------------------CTTAGTTAA------------------------------------------------------AAT------AGA----------G--------GAA--TGC-------------------------------GCTGGAG-----------------G---GAGA-GT-----------------T------------------------------------TTCGTTT-TTATACCCGATACTCAA----AATGAG-TATTGGGGTATATTAGATTGGTGGTGAAAATGGATTTGTGTAACGTCCAGAAGGAATCGTTTCCCACTCCATAAAGTACATAT----ATTCTTGATCAGCATCAATAGCCGAGTCGACTGAGCCCTGTCGGTCTGTGC----GTC----CCTATGAGCTCCTAGTGTTCAAAGACTATAA
droPer2	scaffold_43:225028-225291 +		AAGCAAGG--------TAAAGGTAAAAGCA---------AA-------------AAATCTAATATATTAGATAAATTAAATCGTTAGACAAA-------------------------------------------------------------------------------------------------------------TATTACCGGTTA--------------------------------------------------------------------------------------------------------------------TCGTTTT-TTATACCCGATACTCA-------------AAATTAGTATATTGGATTTGTGGTGAAAGTGGATGTGTGTAACGTCCAGACGGAAGTGTTTCCGACCCCATAAAGTACATAT----ATTCTTTATCAGCGTCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCC----GTC----CCTATGAGCGCCTAGTGCTCAGAGACTATAA
droAna3	scaffold_13250:1751383-1751614 -		ATTCGTAA--AGAAGCA------AAAGTCT---------CA--TAATTAAGAAAAG---------------------------------------------------ATTTAATAAAAAA--------------------------------------------------------A---------------------------------------------------------------------------TGGTTAAAATTA-AAAAAA--ATA-----TT---------T------------------------------------CTTCTTT-TTATACCCTT-----G-------------CAAAGGGTATTATAATTTGG-TC-------AAAAGTGTGCAACTTATTGAAGGAGACATCTCCGACCCTATAAAGTATATAT----ATCGAT----------------ATAGTCGGTAAAAGCATGTCCGCGTGTCT------------GTCTGTACGTCTGTCTGTCGGTTTCTACGC
droBip1	scf7180000395446:1589-1858 +		GTTGATAA--------AAAATTTAAAAGCC---------AG-----CATACAGGGA---------------------------------------------------GAAATGTCA------------------------------------------------------AATAAA-CAAAATAGA------A--------AGA--CAG-------------------------------A---------------------------CAA--ACG-----T----------T--------TT--------CGCAT-------------TTTCGTT-TTATACCCGGTACTCGT------AGAG-TACAAGGGTATATTGTAGTCGTGT-------GAATGTATGTAACATGGAGAAGGAGTCATCTCCGACCCCATAAAGCTTATTT----ATTCTTGATCAGCAACAATAGCCGAGTCGATATAGCCATGTATAGACGTCT----GTC----CGTCTGAACGCGTGGATCTCAGGGACCATAC
droKik1	scf7180000298448:4273-4489 -		ATTAATATCTAAACCAAATTATTATATGCT---------GAGTATATTAATACAAC---------------------------------------------------TT---------------------------------------------------------------------------------------TTATATAA----------------------------------------------------------------------TT-----CC---------T------------------------------------TTTATTT-TTATACCCTT-----G---------------CAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATAT----ATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTC----TGTCTG-------------------------
droFic1	scf7180000454040:677560-677788 -		CAAATATG----TCGAACAA----AATGCA---------CA-----------------------------------------------------------------------AAGGT-------------------------------------------------------TAAAG------AACATCAAAG--CTAA----------------------------------------------------------------------GA---T-----GAT---------T----------------------------TTT-----CTATTCA-TTATACCC-----TTGC------AGAG-CAAA-GGGCATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATAT----ATTCTTGATCAGCATCACGATCTGAATCGA--------AATCCGTCTGTCT----GTT----TCTATGTAAACTAGTCTCTCAG----TTTTA
droEle1	scf7180000490167:5674-5866 +		AAATT-----------------CAAAGCAC---------AAACAGGCGAACGGAAT---------------------------------------------------GTTCGTAAATCA-----------------------------------------------------------------------AA----------------------------------------------------------------------------AAAAAATTTCTTGAT---------TTTTCT--------------------------------CGTTCC-TTATTTCT---AAGTGT------TGAG-TAAAAGGGTTTATTTTATT-------------ATATTGTGAAACAGGTAGTAGGAAACGTTTTCGACCCTATAA-----------------------------------------------GCCATGTCCGT------------T----TGTATGAACGTCGAGATCTCGAAAACTATAA
droRho1	scf7180000766846:17227-17466 +		AAGAAAA---------GAAAATTACATGCA---------AG-----TCCACAGAAA---------------------------------------------------TTCGTGTTT------------------------------------------------------TTTAAA-C-----ATAATCAGAG-----A---------------------------------------------------------------------------------------------T------------------------------------ATAGTTT-TTATACCCGTTACTCGT------AGAG-TAAAAGGGTATATTGCATTCGTGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATAT----ATTCATGTTCAGGATCACT--------------AGCCATGTCCGTCTGTCTGTCCGTC----CGTATGAACGCTGAGATCTCGGAAACTACAA
droBia1	scf7180000302519:137951-138198 +		TTTGACCC--A-----GAAAAATAAAAATG---------AAAAAC---------------------------------------------------------------------AATCAA---------------------------------GAACATTATTCATGATTTGA-------GA----------A--------CAA--TCC-------------------------------------------------------------------------G---------T---------------------TC-------------TCCATTT-TTATACCCGTTACTCGT------AGAG-TAAAAGGGTATACTATATTCGTCA-------AAAAGTATGTAACAGGAAGAAG-AAGCGTTTCCGACCCCATAAAGTGTATAT----ATTCTGGATCAGGATCACTAGCCAAGTCGATCAAGCCATGTCCGT------------C----TGTATGAACTATGAGATCTCGGAAACTATAA
droTak1	scf7180000415667:102913-103151 +		GATGAGTG----ACTTAAAAATTA----------------AGGACATA------------------------------------------------------------------------------------------------------------------------------AGGTATCTTTGGGTCAAA----------------A---------------------------AAGCATTGTAG-----------------A---AGAAAA------------------T------------------------------------ATTTTTA-TTATACCCGTTACTCGT------AGAG-TAAAAGGGTATATTGTATTCGTGC-------AAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATAT----ATAT-------------ATAGCCGAGTCGATATAGCAATGTCCGTCTGTCT----GTC----TGTATGAACGCTT---TCTCGGAAACTACAA
droEug1	scf7180000408987:294724-295010 +		ATTGATGG-----CTCTGAATTTTAACGTT---------AAGGATCTTGATATAAA---------------------------------------------------------------------------------------------------------------------------------------A----------------A---------------------------AAGTCTTTTAGGAAATCTTTTAAAGTTA-CAAAAC--TTA-----T----------T----------------TTTGAAC-------------TGCATTT-TTATACCCGTTACTCGT------AGAG-TAAAAGGGTATATTAGATTCGTTG-------AAAAGTATTTTACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATAT----ATTCTTGATCAGGATCAATAGCGAAAACGATTGAGCCATGTCCGTCTGTCTGTTCGTCTGTCCGCATGAACGCTGAGATCTCAGGAACTATAA
dm3	chrX:46286-46507 +		ATTCATTA--G--TTCAAAACAT-AATGTT---------AGGGACTTT------------------------------------------------------------------------------------------------------------------------------AAG------TAGGTCAAAATATTTA----------------------------------------------------------------------AA---C-----GAT---------T----------------------------TAA-----AAAGTAA-TCATACCCGTTACTCGT------AGAG-TAAAAGAGCACACTAGATTCGCTG-------AAAAGTATGTAACAGGCAGAAA-AAGTATTTCCGACTGTATAAAGTATATAT----ATTCT--AT-----------------------CAGCCATGTCAGTCTGT--------C----CGTATGAACGTCGAGATCTCAGGAACTATAA
droSim2	4:855733-855958 -		ACATTA----ACAAT----AAGTAAGGAAA---------AAA----------------------------------------------------------------------AAAGTTA--------------------------------------------------------------------CC-------------------------------------------------------------------------------AAAAAGTTTTTAGTT---------TAGTTTAGTTTCTTAGTT-------------------TTTTTTA-GTCTACGAATTA-GAGT------ATAG-TAAAAGGATATATT---TTCCTTA-------AAAAGTGTGTAACAGGCAGATGGAAGCGTTTCCGGCTATATAAAGTATATATGTATATTCTT--------------------------CAGCCATGTCCGTGTGT--------A----TGTATGAACGTCGAGATCTCAGAAACTATAA
droSec2	scaffold_30:65751-66009 -		ACTAATTA--AAGCGAGAAATTTAAAAGCC---------AAAGATATCAACGGAAA---------------------------------------------------ATCTGGTAAGCAG---------------------------------GAACA---------------------------------------------------------------------------CAAGTGTATATCAG-----------------A---AAA--ATT-TTTT--TTTAATATT-------------------CC-----AATCAG-----GATTTAATTTAACCCTGTAGCTCCT------ATAG-AAATAG--TA-ACTAGATTCGTTG-------AAATGTATGTAGCAGGTTGGAGGA----------------------------------------TCAGGATCG-CAATTAAGTCGATTTGGCTATGTCAGTCTGCCTCTCATTG----CTCATGGACGTCAAGAACTCTGGAACTAGAA
droYak3	3R:372730-373012 -		ATTGTGTA--AAACTAAAAACTTAAAAAGC---------ATGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTATCGTCCTTTAAGCTCACACTCAA---TAT-----------------------A--CAAAAATTTTAAT--ATTAATTTT-------------------TG-----TGGCGT-----AATATAA-TTATACCCGTTACTCGT------AGAG-TAAAAGGTTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATAT----ATTCTTGATCAGGACCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCC----GTC----CGTATGAACGTCGAGATCTCAGGAACTACAA
droEre2	scaffold_4512:988816-989111 +		ATTAATTA--AAGCGAGGAATTTAAAGGCC---------AAAGATATCAACGGAAA---------------------------------------------------ATCTGGTAAGCAGAACAAGTTTATAATAT---------------------------------------------------------------------------------------------------------------------------------AAGAGA--ATTTTTATTG---------T--TTTAATTACGTATTCTTGTACTTAATTAAAGAATGGAATAA-TTATATCCGTTACTCA-----------------------ACTAGATTCGTTG-------AAAAGTATGTAACCGGTAGATGGAATCCTTTCCA-----ATAAAGTAGAT-T----ATTCTTGAAAATGACCAATAGCCAAGTCGATCTGGCCATGTCCGTCCGTCTATTTGTC----CGCGTGAACGCAGAGATCTCCTGAACTATAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

ATTGATCA--AGGCGAGAAATTTAAAAGCC---------AAGGATATCAACGGAAA---------------------------------------------------GTCAGGTAA------------------------------------------------------ATC------AAATCAAATCAAAA-----A----------------------------------------------------------------------GA---TG-----AG---------T------------------------------------TTTCTTT-TTATACCCTAAACCCATTAAAAATGGG-TATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTATATAT----ATTCT----------------------------------GTCCGCCCGTCCGTCCGTA----TGTATGAACGCAAGGATCTCAGAACCTATAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----TGTATGAACGCAAGGATCTCAGAACC.....	28	20	2.65	53	3	0	21	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TATAAGGGTATATT......................................................................................................................................................................	25	20	1.85	37	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGA.................................................................................................................................	23	20	0.75	15	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCA.........................................................................................................................	23	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCT......................................................................................................................	24	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATC.......................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0
.................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TATAAGGGT...........................................................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCGACCC...............................................................................................................	23	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCATC.......................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA----TGTATGAACGCAAGGATCTCAGA........	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTA----TGTATGAACGCAAGGAT..............	27	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCATC.......................................................................................................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAA............................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----TGTATGAACGCAAGGATCTC...........	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAACGCAAGGATCTCA..........	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCATCTCCGACCCCA.............................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TAAGGGTATATTGTATTTGTGC............................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCTCCG...................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TATAAGGGTATA........................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TATTTGTGCAAAATCCAAATGTATGT...........................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCATCTCCGA..................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TAAACCCATTAAAAATGGG-TATAAGGG............................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAATGTATGTAACAGGC....................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAGCATCTC.....................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TTAAAAATGGG-TATAAGGGTATATTG.....................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCATCT......................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AATGTATGTAACAGGCAGAAGGAAGCA.........................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAG...............................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCGACC................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCCGTA----TGTATGAACG.....................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................TATATTGTATTTGTGCAAAAT.......................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ATTAAAAATGGG-TATAAGGGTATAT.......................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAG...............................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATATTGTATTTGTGCAAAAT.......................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AATGTATGTAACAGGCAGAAGGA.............................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCATCT......................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCCCATAAAGTATATAT----A............................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGC..........................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----TGTATGAACGCAAGGATC.............	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----TGTATGAACGCAAGGATCTCAGA........	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGCAGAAGGAAGCATC.......................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAAGCATCTCCGACCCCA.............................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAGCATCTCCGACCCCATAAAG........................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAGAAGGAAGCATCTCCG...................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCAAATGTATGTAACAGGC....................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCATCTCCGAC.................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAGAAGGAAGCATCTCCGA..................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................CAAATGTATGTAACAGGCAGAAGGAA............................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCGACCCCAT............................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGGAAGCATCTCCG...................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCATCTCC....................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TATTGTATTTGTGCAAAATCC.....................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TATTGTATTTGTGCAAAATCCAAAT.................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGCAGAAGG..............................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................AATCCAAATGTATGTAACAGGCAGAAG...............................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGTTAAAG---------AAA----------------------------------AG---------------------------------------------------ATCGAATAATA--------------------------------------------------------AAG------TATCCC---------------------------------------------------------------------------------AAAATTTGGAG-------------------------------------------------TGTTTT-TTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATACTGGTTTTGT-G-------AAAGGTATGTAACAGGTAGAAGGAATCATCGCAAGCGCCATAAAGTATATAT----ATTCTT---------------------------------GTCCGTCTGTCC----GTA----TGTTTTAACGCGTCGATCTCAGAAGATATAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATACTGGTTT.................................................................................................................................................................	24	12	0.17	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................ACCCTGAACCCATTGAAAA.........................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	3	0
........................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATACTGGTTTTG...............................................................................................................................................................	26	12	0.08	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TGAAAATGGGAAATCAGGGTATAC.......................................................................................................................................................................	24	14	0.07	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................AATGGGAAATCAGGGTATAC.......................................................................................................................................................................	20	18	0.06	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................CATTGAAAATGGGAAATCAGGGTATA........................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TGAACCCATTGAAAATGGGAAATCAGG.............................................................................................................................................................................	27	20	0.05	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................TT-TTATACCCTGAACCCATT..............................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0

droGri2

GTTACCGA--------G--ATTTAAATGAA---------AA---------------------------------------TCGATAATCGAATGACACCAACAAATAATATGATAATA----------------------------------------------------------------TTGA------A--------AGA--TAA----------------------------TACATAT----------------------------------------------------ATAATAT--------------------------CGCATTT-TTATACCCAGAATCCATTAAAAATGGG-TCAAAGGGTATAATGGTTTTGTGA-------TAATGTATGTAACAGGCAGAAGGAAGCATCTCCAACCCCATAAAGTATATATGTATATTCTTGATCAGGGTCAACAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCCGTC----TGTCTGAACACGTAGATCTCAGAGACTATAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGC..........................................................................................................................	21	20	0.05	1	1	0

droWil2

ATTTCA----ACGCTGAAAACTTA------TTGT----------------------------------------------------------------------------------GGATTACAAGTCTAAAATATAAAAAAAAGGAAGACAAAGCC-------------ATA-AAGTAGAATACAAACAAA----------------A-------------------------------A---------------------------AGA--ATG-----------------------------------------------------CTTATTT-TTATACCATGCACTTAT------AGGA-TGAAATGGTATATTAAATTCGTCA-------AAATGTATGTAACAGGCAAAA------ATCTCCGACCCCATAAAGTCG--------------------------GATCGAAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTC----TGTATTCACACGCAGATCTCGGAGACTATAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGTCCGTCTG.............................................	21	20	0.15	3	0	0	3	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CGTCA-------AAATGTATGTAACAGG.....................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TCA-------AAATGTATGTAACAGGCA...................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAGATCTCGGAGACT....	18	20	0.05	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGTCCGTCCG.....................................	20	20	0.05	1	0	0	0	1	0

dp5

ATTGTCCA--------GCAATTTGAGATGGTTGTAGATGAATAACAACAATAGTTA---------------------------------------------------CTTAGTTAA------------------------------------------------------AAT------AGA----------G--------GAA--TGC-------------------------------GCTGGAG-----------------G---GAGA-GT-----------------T------------------------------------TTCGTTT-TTATACCCGATACTCAA----AATGAG-TATTGGGGTATATTAGATTGGTGGTGAAAATGGATTTGTGTAACGTCCAGAAGGAATCGTTTCCCACTCCATAAAGTACATAT----ATTCTTGATCAGCATCAATAGCCGAGTCGACTGAGCCCTGTCGGTCTGTGC----GTC----CCTATGAGCTCCTAGTGTTCAAAGACTATAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................TAGTTA---------------------------------------------------CTTAGTTAA------------------------------------------------------AAT------AGA----------G--------GAA--...................................................................................................................................................................................................................................................................................................................................................	25	6	2.17	13	0	6	0	1	0	0	2	2	2	0
..................................................TAGTTA---------------------------------------------------CTTAGTTAA------------------------------------------------------AAT------AGA----------G--------GA......................................................................................................................................................................................................................................................................................................................................................	24	6	1.67	10	0	9	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCG................................................................	21	20	1.60	32	0	32	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGAC..............................................................	27	9	1.22	11	0	5	4	0	0	0	0	2	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGC----GTC----CCTATGAGCTCCTAGTG..............	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................GAG-TATTGGGGTATATTAGATTGG...............................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTGGTGGTGAAAATGGATTTGTGT...........................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TGGTGGTGAAAATGGATTTGTGTAACG.......................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................ATTGGGGTATATTAGATTGGTGGTG..........................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCCTGTCGGTCTGTGC----GT....................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCCACTC...............................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCG................................................................	25	20	0.90	18	0	0	0	0	0	0	18	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TGAG-TATTGGGGTATATTAGA...................................................................................................................................................................	21	20	0.85	17	0	0	0	0	0	0	0	17	0	0
....TCCA--------GCAATTTGAGATGGTTGTAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.67	4	0	0	0	0	0	0	0	4	0	0
....................TTTGAGATGGTTGTAGATGAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.60	3	0	0	0	0	0	0	0	0	3	0
.TTGTCCA--------GCAATTTGAGATGGTTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGACTGAGC.........................................................	28	5	0.40	2	0	0	0	0	0	0	0	0	2	0
......................TGAGATGGTTGTAGATGAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.40	2	0	1	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGACT.............................................................	28	6	0.33	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----ATTCTTGATCAGCATCAATAGCC......................................................................	25	20	0.30	6	0	0	6	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----ATTCTTGATCAGCATC.............................................................................	20	20	0.25	5	0	5	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................AA----AATGAG-TATTGGGGTATATTAGA...................................................................................................................................................................	25	20	0.25	5	0	0	0	0	0	0	0	5	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCCAGAAGGAATCGTTTCCCA..................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................GAGATGGTTGTAGATGAATAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCCAGAAGGAATCGTTTCCC...................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0
....................TTTGAGATGGTTGTAGATGAATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................TTCGTTT-TTATACCCGATT....................................................................................................................................................................................................	19	5	0.20	1	1	0	0	0	0	0	0	0	0	0
.........................GATGGTTGTAGATGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.........................GATGGTTGTAGATGAATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	1	0
.................CAATTTGAGATGGTTGTAGATGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0
......................TGAGATGGTTGTAGATGAATAACAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	0	0	0	0	0	0	0	1	0
......................TGAGATGGTTGTAGATGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGACTGAGCCCTGTC...................................................	20	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................A----AATGAG-TATTGGGGTATATT......................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	4	0	0	0
....................TTTGAGATGGTTGTAGATGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................T------AGA----------G--------GAA--TGC-------------------------------GCTGGAG-----------------G---.....................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	1	0	0	0	0	0	0	0	0
......................................................TA---------------------------------------------------CTTAGTTAA------------------------------------------------------AAT------AGA----------G--------GAA--TG.................................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	0	0	0	0	0	0	0	1	0
...................................................AGTTA---------------------------------------------------CTTAGTTAA------------------------------------------------------AAT------AGA----------G--------GAA--...................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	0	0	0	0	0	0	1	0
..................................................TAGTTA---------------------------------------------------CTTAGTTAA------------------------------------------------------AAT------AGA----------G--------GAA--T..................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................TTAGTTAA------------------------------------------------------AAT------AGA----------G--------GAA--TGC-------------------------------GCT..............................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................A----AATGAG-TATTGGGGTATAT.......................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................G-TATTGGGGTATATTAGA...................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	3	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATGAG-TATTGGGGTATATTAG....................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	3	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGAGTCGAC..............................................................	28	7	0.14	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGTAACGTCCAGAAGG..............................................................................................................................	20	8	0.13	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGACTGA...........................................................	20	8	0.13	1	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAATAGCCGAGTCGAC..............................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................ACTCAA----AATGAG-TATTGGGGTAT.........................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----ATTCTTGATCAGCATCAATAGCCG.....................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................T----ATTCTTGATCAGCATCAAT..........................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CGTTT-TTATACCCGATACTCAA----AATGA......................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................TATACCCGATACTCAA----AATGA......................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGT..................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCGTTTC.....................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATAAAGTACATAT----ATTCTT.......................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATAT----ATTCTTGATCAGCATCAA...........................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAGTCG................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TCAA----AATGAG-TATTGGGGTATATT......................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAG...................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAG........................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0

droPer2

AAGCAAGG--------TAAAGGTAAAAGCA---------AA-------------AAATCTAATATATTAGATAAATTAAATCGTTAGACAAA-------------------------------------------------------------------------------------------------------------TATTACCGGTTA--------------------------------------------------------------------------------------------------------------------TCGTTTT-TTATACCCGATACTCA-------------AAATTAGTATATTGGATTTGTGGTGAAAGTGGATGTGTGTAACGTCCAGACGGAAGTGTTTCCGACCCCATAAAGTACATAT----ATTCTTTATCAGCGTCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCC----GTC----CCTATGAGCGCCTAGTGCTCAGAGACTATAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGGATGTGTGTAACGTC.....................................................................................................................................	21	20	2.40	48	0	0	0	0	0	48
...........................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTGGTGAAAGTGGAT.................................................................................................................................................	21	3	2.00	6	0	0	0	0	0	6
........................................................................................................................................................................................................................................................................................................................................................................................ATTGGATTTGTGGTGAAAGTG....................................................................................................................................................	21	2	2.00	4	0	0	0	0	0	4
...........................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTGGTGAAAGTGG...................................................................................................................................................	19	3	1.67	5	0	0	0	0	0	5
..........................................................................................................................................................................................................................................................................................................................................................................................TGGATTTGTGGTGAAAGTGGA..................................................................................................................................................	21	3	1.67	5	0	0	0	0	0	5
...........................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTGGTGAAAGTGGA..................................................................................................................................................	20	3	1.33	4	0	0	0	0	0	4
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCC----......................................	20	20	0.60	12	0	12	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TTGGATTTGTGGTGAAAGTG....................................................................................................................................................	20	2	0.50	1	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TATTGGATTTGTGGTGAAAGT.....................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTGGTGAAAGTGGATT................................................................................................................................................	22	5	0.40	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTGGTGAAAGTGGT..................................................................................................................................................	20	6	0.33	2	0	0	0	0	1	1
..........................................................................................................................................................................................................................................................................................................................................................................................TGGATTTGTGGTGAAAGTGG...................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTGGTGAAAGTGT...................................................................................................................................................	19	9	0.22	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................................................................................................................................GGATTTGTGGTGAAAGTGGAA.................................................................................................................................................	21	5	0.20	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................AGTGGATGTGTGTAACGTC.....................................................................................................................................	19	20	0.20	4	0	4	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TGGATTTGTGGTGAAAGTGGATT................................................................................................................................................	23	5	0.20	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCCATGTCTGTCTGTC...........................................	21	20	0.10	2	0	0	0	0	0	2
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCTAGTGCTCAGAGAC.....	20	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCC----G.....................................	21	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGTGGATGTGTGTAACG.......................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droAna3

ATTCGTAA--AGAAGCA------AAAGTCT---------CA--TAATTAAGAAAAG---------------------------------------------------ATTTAATAAAAAA--------------------------------------------------------A---------------------------------------------------------------------------TGGTTAAAATTA-AAAAAA--ATA-----TT---------T------------------------------------CTTCTTT-TTATACCCTT-----G-------------CAAAGGGTATTATAATTTGG-TC-------AAAAGTGTGCAACTTATTGAAGGAGACATCTCCGACCCTATAAAGTATATAT----ATCGAT----------------ATAGTCGGTAAAAGCATGTCCGCGTGTCT------------GTCTGTACGTCTGTCTGTCGGTTTCTACGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.....................................................................................................................................................................................................................................................................................................................................................................................TATTATAATTTGG-TC-------AAAAGTGTGC...........................................................................................................................................	25	8	0.13	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TTATAATTTGG-TC-------AAAAGTGTGCAAC........................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GGTATTATAATTTGG-TC-------AAAAGTG..............................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TATTATAATTTGG-TC-------AAAAGTG..............................................................................................................................................	22	10	0.10	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................AATTTGG-TC-------AAAAGTGTGCAAC........................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0

droBip1

GTTGATAA--------AAAATTTAAAAGCC---------AG-----CATACAGGGA---------------------------------------------------GAAATGTCA------------------------------------------------------AATAAA-CAAAATAGA------A--------AGA--CAG-------------------------------A---------------------------CAA--ACG-----T----------T--------TT--------CGCAT-------------TTTCGTT-TTATACCCGGTACTCGT------AGAG-TACAAGGGTATATTGTAGTCGTGT-------GAATGTATGTAACATGGAGAAGGAGTCATCTCCGACCCCATAAAGCTTATTT----ATTCTTGATCAGCAACAATAGCCGAGTCGATATAGCCATGTATAGACGTCT----GTC----CGTCTGAACGCGTGGATCTCAGGGACCATAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTAATATCTAAACCAAATTATTATATGCT---------GAGTATATTAATACAAC---------------------------------------------------TT---------------------------------------------------------------------------------------TTATATAA----------------------------------------------------------------------TT-----CC---------T------------------------------------TTTATTT-TTATACCCTT-----G---------------CAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATAT----ATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTC----TGTCTG-------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAATATG----TCGAACAA----AATGCA---------CA-----------------------------------------------------------------------AAGGT-------------------------------------------------------TAAAG------AACATCAAAG--CTAA----------------------------------------------------------------------GA---T-----GAT---------T----------------------------TTT-----CTATTCA-TTATACCC-----TTGC------AGAG-CAAA-GGGCATTATAATTTCAGTC-------AGAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATAT----ATTCTTGATCAGCATCACGATCTGAATCGA--------AATCCGTCTGTCT----GTT----TCTATGTAAACTAGTCTCTCAG----TTTTA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAATT-----------------CAAAGCAC---------AAACAGGCGAACGGAAT---------------------------------------------------GTTCGTAAATCA-----------------------------------------------------------------------AA----------------------------------------------------------------------------AAAAAATTTCTTGAT---------TTTTCT--------------------------------CGTTCC-TTATTTCT---AAGTGT------TGAG-TAAAAGGGTTTATTTTATT-------------ATATTGTGAAACAGGTAGTAGGAAACGTTTTCGACCCTATAA-----------------------------------------------GCCATGTCCGT------------T----TGTATGAACGTCGAGATCTCGAAAACTATAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAGAAAA---------GAAAATTACATGCA---------AG-----TCCACAGAAA---------------------------------------------------TTCGTGTTT------------------------------------------------------TTTAAA-C-----ATAATCAGAG-----A---------------------------------------------------------------------------------------------T------------------------------------ATAGTTT-TTATACCCGTTACTCGT------AGAG-TAAAAGGGTATATTGCATTCGTGC-------AAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATAT----ATTCATGTTCAGGATCACT--------------AGCCATGTCCGTCTGTCTGTCCGTC----CGTATGAACGCTGAGATCTCGGAAACTACAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTTGACCC--A-----GAAAAATAAAAATG---------AAAAAC---------------------------------------------------------------------AATCAA---------------------------------GAACATTATTCATGATTTGA-------GA----------A--------CAA--TCC-------------------------------------------------------------------------G---------T---------------------TC-------------TCCATTT-TTATACCCGTTACTCGT------AGAG-TAAAAGGGTATACTATATTCGTCA-------AAAAGTATGTAACAGGAAGAAG-AAGCGTTTCCGACCCCATAAAGTGTATAT----ATTCTGGATCAGGATCACTAGCCAAGTCGATCAAGCCATGTCCGT------------C----TGTATGAACTATGAGATCTCGGAAACTATAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GATGAGTG----ACTTAAAAATTA----------------AGGACATA------------------------------------------------------------------------------------------------------------------------------AGGTATCTTTGGGTCAAA----------------A---------------------------AAGCATTGTAG-----------------A---AGAAAA------------------T------------------------------------ATTTTTA-TTATACCCGTTACTCGT------AGAG-TAAAAGGGTATATTGTATTCGTGC-------AAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATAT----ATAT-------------ATAGCCGAGTCGATATAGCAATGTCCGTCTGTCT----GTC----TGTATGAACGCTT---TCTCGGAAACTACAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ATTGATGG-----CTCTGAATTTTAACGTT---------AAGGATCTTGATATAAA---------------------------------------------------------------------------------------------------------------------------------------A----------------A---------------------------AAGTCTTTTAGGAAATCTTTTAAAGTTA-CAAAAC--TTA-----T----------T----------------TTTGAAC-------------TGCATTT-TTATACCCGTTACTCGT------AGAG-TAAAAGGGTATATTAGATTCGTTG-------AAAAGTATTTTACAGGTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATAT----ATTCTTGATCAGGATCAATAGCGAAAACGATTGAGCCATGTCCGTCTGTCTGTTCGTCTGTCCGCATGAACGCTGAGATCTCAGGAACTATAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATTCATTA--G--TTCAAAACAT-AATGTT---------AGGGACTTT------------------------------------------------------------------------------------------------------------------------------AAG------TAGGTCAAAATATTTA----------------------------------------------------------------------AA---C-----GAT---------T----------------------------TAA-----AAAGTAA-TCATACCCGTTACTCGT------AGAG-TAAAAGAGCACACTAGATTCGCTG-------AAAAGTATGTAACAGGCAGAAA-AAGTATTTCCGACTGTATAAAGTATATAT----ATTCT--AT-----------------------CAGCCATGTCAGTCTGT--------C----CGTATGAACGTCGAGATCTCAGGAACTATAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTCTGT--------C----CGTATGAACGTCGAGA...............	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------C----CGTATGAACGTCGAGATCTCAGG........	27	20	2.70	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	3	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	10	0	0	0	0	4
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGT--------C----CGTATGAACGTCGAGA...............	22	20	2.65	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0	0	0	0	0	6	0	0	1	10	0	0	0	0	0	0	0	4	7	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------C----CGTATGAACGTCGAGATCTCAGG........	25	20	2.60	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	2	0	1	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGTCGAGATCTCAGGAACTATA.	26	20	2.40	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	5	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTATGAACGTCGAGATCTCAGGAAC.....	26	20	2.25	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	10	0	6	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACGTCGAGATCTCAGGAAC.....	24	20	2.15	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTCTGT--------C----CGTATGAACGTCGA.................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--------C----CGTATGAACGTCGAGATCTCAGGA.......	28	20	1.70	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCGAGATCTCAGGAA......	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATCTCAGGAACTATAA	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGTCGAGATCTCAGGAACTC...	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--------C----CGTATGAACGTCGAGAT..............	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGAGATCTCAGGAACTAT..	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACATTA----ACAAT----AAGTAAGGAAA---------AAA----------------------------------------------------------------------AAAGTTA--------------------------------------------------------------------CC-------------------------------------------------------------------------------AAAAAGTTTTTAGTT---------TAGTTTAGTTTCTTAGTT-------------------TTTTTTA-GTCTACGAATTA-GAGT------ATAG-TAAAAGGATATATT---TTCCTTA-------AAAAGTGTGTAACAGGCAGATGGAAGCGTTTCCGGCTATATAAAGTATATATGTATATTCTT--------------------------CAGCCATGTCCGTGTGT--------A----TGTATGAACGTCGAGATCTCAGAAACTATAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTAACAGGCAGATGGAAGCGTT.......................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TA-------AAAAGTGTGTAACAGGCAGATGGA.............................................................................................................................	26	2	1.50	3	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGTGT--------A----TGTATGAAC......................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATCTCAGAAACTATA.	21	16	0.63	10	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCGAGATCTCAGAAAC.....	20	20	0.60	12	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAACGTCGAGATCTCAGAAA......	25	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACAGGCAGATGGAAGCGT........................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGTGTAACAGGCAGATGGA.............................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----TGTATGAACGTCGAGAT..............	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATCTCAGAAACT....	16	20	0.20	4	0	0	0	0	0	0	1	1	0	0	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATCTCAGAAAC.....	15	20	0.10	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATCTCAGAAACTA...	17	20	0.10	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGTCGAGATCTCAGAAACT....	24	11	0.09	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCGAGATCTCAGAAACTATA.	25	11	0.09	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAACGTCGAGATCT............	19	14	0.07	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAACGTCGAGA...............	16	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATCTCAGAAACTATA.	19	19	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGATCTCAGAAACT....	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAACGTCGAGATCTCAG.........	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

ACTAATTA--AAGCGAGAAATTTAAAAGCC---------AAAGATATCAACGGAAA---------------------------------------------------ATCTGGTAAGCAG---------------------------------GAACA---------------------------------------------------------------------------CAAGTGTATATCAG-----------------A---AAA--ATT-TTTT--TTTAATATT-------------------CC-----AATCAG-----GATTTAATTTAACCCTGTAGCTCCT------ATAG-AAATAG--TA-ACTAGATTCGTTG-------AAATGTATGTAGCAGGTTGGAGGA----------------------------------------TCAGGATCG-CAATTAAGTCGATTTGGCTATGTCAGTCTGCCTCTCATTG----CTCATGGACGTCAAGAACTCTGGAACTAGAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------TCAGGATCG-CAATTAAGTCG................................................................	21	1	1.00	1	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTG-------AAATG................................................................................................................................................	18	9	0.11	1	0	0	0	1

droYak3

ATTGTGTA--AAACTAAAAACTTAAAAAGC---------ATGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTATCGTCCTTTAAGCTCACACTCAA---TAT-----------------------A--CAAAAATTTTAAT--ATTAATTTT-------------------TG-----TGGCGT-----AATATAA-TTATACCCGTTACTCGT------AGAG-TAAAAGGTTATACTAGATTCGTTG-------AAAAGTATGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTATATAT----ATTCTTGATCAGGACCAATAGCCGAGTCGATCTGGCCATGTCCGTCTGTCC----GTC----CGTATGAACGTCGAGATCTCAGGAACTACAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGACCAATAGCCGAGTCGA...............................................................	28	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TCGT------AGAG-TAAAAGGTTATACTAGA...................................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCAATAGCCGAGTCGATCTGGC.........................................................	25	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGACCAATAGCCG.....................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATCTGGCCATGTCCGTCT..............................................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGACCAATAGCCGA....................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----ATTCTTGATCAGGACCAATAGCCGAG...................................................................	29	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----ATTCTTGATCAGGACC.............................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TATACCCGTTACTCGT------AGAG-TAA.................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGGCCATGTCCGTCTGTC...........................................	29	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

ATTAATTA--AAGCGAGGAATTTAAAGGCC---------AAAGATATCAACGGAAA---------------------------------------------------ATCTGGTAAGCAGAACAAGTTTATAATAT---------------------------------------------------------------------------------------------------------------------------------AAGAGA--ATTTTTATTG---------T--TTTAATTACGTATTCTTGTACTTAATTAAAGAATGGAATAA-TTATATCCGTTACTCA-----------------------ACTAGATTCGTTG-------AAAAGTATGTAACCGGTAGATGGAATCCTTTCCA-----ATAAAGTAGAT-T----ATTCTTGAAAATGACCAATAGCCAAGTCGATCTGGCCATGTCCGTCCGTCTATTTGTC----CGCGTGAACGCAGAGATCTCCTGAACTATAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................TG-------AAAAGTATGTAACCGGTAGATGGA.............................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
...........................................ATATCAACGGAAA---------------------------------------------------ATCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTGGCCATGTCCGTCCGTCT..........................................	25	20	0.05	1	0	1	0	0	0	0	0

dvi_22008

scaffold_13052:793822-793972 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

TAACTAGTTCCGCTCTTTAAATTTTCGGTTCCTATAGTTGCCTTTCAGTCCATTTAGTTTAGTTTAGTTTTTCTACTCAAAAGAAAAATATGGGATTTGGGTAATTTTTACCCATATTCCCATATAACATAAACACGTTTTAGGTTTACATACATTGTCCGTCTTCCTTCGTAGAGGCTGGGGTATTTCATATATATAAGACAGGCGGGCAGGCAGGCATACATACTTGCGTTCCTAGAGTCTTGGATATT *************************************************************************************.......((.(((((.((((...(((((....))))).))))...))))).)).........****************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060654 160x9_ovaries_total	SRR060674 9x140_ovaries_total	M047 female body	SRR060684 140x9_0-2h_embryos_total	SRR060656 9x160_ovaries_total	SRR060683 160_testes_total	SRR060670 9_testes_total	SRR060657 140_testes_total	SRR060688 160_ovaries_total	M027 male body	V116 male body	SRR060678 9x140_testes_total	SRR060655 9x160_testes_total	SRR060679 140x9_testes_total	SRR060677 Argx9_ovaries_total	SRR060682 9x140_0-2h_embryos_total	SRR060662 9x160_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total	V053 head	SRR060686 Argx9_0-2h_embryos_total	SRR060673 9_ovaries_total	SRR060658 140_ovaries_total	SRR1106729 mixed whole adult body	SRR060676 9xArg_ovaries_total	SRR060680 9xArg_testes_total	SRR060681 Argx9_testes_total
..................................TAGTTGCCTTTCAGTCCATTTAGTTT...............................................................................................................................................................................................	26	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GGCAGGCAGGCATACATACTT.......................	21	0	20	0.70	14	0	7	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CGGGCAGGCAGGCATACATACTT.......................	23	0	12	0.58	7	0	0	0	1	3	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTGCGTTCCTAGAGTCTTGGATATT	25	0	20	0.35	7	0	0	0	5	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................AACATAAACACGTTTTAGGTTTACAT....................................................................................................	26	0	20	0.30	6	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CGTTTTAGGTTTACATACATTGT.............................................................................................	23	0	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................AAACACGTTTTAGGTTTACAT....................................................................................................	21	0	20	0.25	5	0	0	0	0	0	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................GTCTTCCTTCGTAGAGGCTGGGGT...................................................................	24	0	20	0.20	4	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GGCGGGCAGGCAGGCATACATACTT.......................	25	0	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CAGGCGGGCAGGCAGGCAT...............................	19	0	15	0.13	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GCAGGCAGGCATACATACTTGCGTT..................	25	0	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACATAAACACGTTTTAGGTTTACAT....................................................................................................	25	0	20	0.10	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGGGGTATTTCATATATATA.....................................................	20	0	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
................................................................TTGTTTTTCTACTCAGAAGAT......................................................................................................................................................................	21	3	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CGGGCAGGCAGGCATACATACTTGCGT...................	27	0	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GGGCAGGCAGGCATACATACTTGCGT...................	26	0	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CGGGCAGGCAGGCATACATACT........................	22	0	15	0.07	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GGGCAGGCAGGCATACATACT........................	21	0	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................CGGGCAGGCAGGCATACAT...........................	19	0	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................TCAGTCCATTCAGATTA..............................................................................................................................................................................................	17	2	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................GGCGGGCAGGCAGGCCTACAT...........................	21	1	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................AGGCAGGCATACATACTTGCGTTCCTA..............	27	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................ACGTTTTAGGTTTACATACATTGTCCG..........................................................................................	27	0	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GGCTGGGGTATTTCATATATAT......................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CTGGGGTATTTCATATATATAAG...................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TCCTTCGTAGAGGCTGGGGTAT.................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................ATAACATAAACACGTTTTAGGT..........................................................................................................	22	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCAGGCATACATACTTGCGTTCCT...............	24	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................AACTGAAAAATATGGGATTTGGGTAA...................................................................................................................................................	26	2	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GCAGGCAGGCATACATACTTGCGTTC.................	26	0	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GGGCTGGCAGGGATACTTA..........................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................CGTAGAGGCTGGGGTATTTCATATA.........................................................	25	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................TGGGATTTGGGTAATTTTTACC...........................................................................................................................................	22	0	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................ATGTGGGATTTGGGTAATTTTTACC...........................................................................................................................................	25	1	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................GGCAGGCAGGCATACATAC.........................	19	0	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................AAAAATATGGGATTTGGGTAA...................................................................................................................................................	21	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCATACATACTTGCGTTCCT...............	20	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................CATACATACTTGCGTTCCTAGAGTCTTG......	28	0	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................AAATATGGGATTTGGGTAATTTT...............................................................................................................................................	23	0	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0