ID:

dvi_21926

 Coordinate:

scaffold_13246:2073105-2073395 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.8 -9.3 -9.2

Flybase annnotation

exon [dvir_GLEANR_16720:17]; CDS [Dvir\GJ16281-cds]; CDS [Dvir\GJ16281-cds]; exon [dvir_GLEANR_16720:16]; intron [Dvir\GJ16281-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGAGGAACTGCCCGCCACCATGGATTCCTTCATGACCTTTATATTTATGGTATTTTTCTTACACATTTTATTTGCCATTCTCTTTCTTTTGAGTATTGTTTTCTTGTAGCCCACTTGAGTTACGGTTTGTACTTGGTTTTATTACCTAGTTTGTAGAACTTTTTGACATATCATGTACCAGAAAAAAAAAAAACACTCCTGTCTCCATTTCTCAATTCCACCTCTAACGTTCTCTTTTCACGCATTCACACATTTACGATGCGCAGGCCTCGGCAATTACGGCGCCGCGATCACACTCTTCACATCCTCCCTTAACGCCTCATTCAAAGTGTTCCGACAGCTCTTTAACAATCTCATGCATTGCCCATCCGAGTTTTTCGATACGACGCC
****************************************************************************************************************************************************.((((.......((((((((((...))))..))))))......))))...((((..................((.......))..........((((((...........)))))))))).************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528803
follicle cells		 M047
female body
 V116
male body		 SRR060654
160x9_ovaries_total
 SRR060670
9_testes_total
 SRR060681
Argx9_testes_total
 V053
head
 SRR060668
160x9_males_carcasses_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
....................................................................................................................................................AGTTTGTAGAACTTTTTGAC............................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................ACTTTTTGACATATCATGTACCAGAAA.............................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................CAAAGTGTTCCGACAGCTCTT............................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................TCACACATTTACGATGCGCAGGC.......................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................TCATGCATTGCCCATCCGAGTTTTTC........... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................TCATGCACTGCCCATCCGAGTTTTTC........... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TCTTTCTTTTGAGTATTGTTTTCT.............................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................ACACATTTACGATGCGCAGGC.......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................GCCTCATTCAAAGTGTTCCGACAGCT................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................GTTGTATTACCTAGTTGGT............................................................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CCAGAAAACACTCCTGTCTCC........................................................................................................................................................................................ 21 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................GGTTGGTACATGGTTTTGTT....................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................GTTTTATTAGCTAGTTGGT............................................................................................................................................................................................................................................ 19 2 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................ATAATGTTCCTGAAAAAAAAAAAA..................................................................................................................................................................................................... 24 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................ATGTTCCTGAAAAAAAAAAA...................................................................................................................................................................................................... 20 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................GTTGTATTAGCTAGTTGGTAG.......................................................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................GAACCAGAAAAAAAAAAAA..................................................................................................................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TGCTCCTTGACGGGCGGTGGTACCTAAGGAAGTACTGGAAATATAAATACCATAAAAAGAATGTGTAAAATAAACGGTAAGAGAAAGAAAACTCATAACAAAAGAACATCGGGTGAACTCAATGCCAAACATGAACCAAAATAATGGATCAAACATCTTGAAAAACTGTATAGTACATGGTCTTTTTTTTTTTTGTGAGGACAGAGGTAAAGAGTTAAGGTGGAGATTGCAAGAGAAAAGTGCGTAAGTGTGTAAATGCTACGCGTCCGGAGCCGTTAATGCCGCGGCGCTAGTGTGAGAAGTGTAGGAGGGAATTGCGGAGTAAGTTTCACAAGGCTGTCGAGAAATTGTTAGAGTACGTAACGGGTAGGCTCAAAAAGCTATGCTGCGG
**************************************************************************************************************************.((((.......((((((((((...))))..))))))......))))...((((..................((.......))..........((((((...........)))))))))).**************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 V053
head
 SRR060662
9x160_0-2h_embryos_total
 M028
head
 V116
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060655
9x160_testes_total
.................................................................................................................................................................................................TGTGAGGACAGAGGTAAAGAGT................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................CTGTGTAAATGCTACGTGTC............................................................................................................................ 20 2 2 0.50 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................AGTGTGTAAGTGTGTAAAT...................................................................................................................................... 19 1 3 0.33 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................TGTTAGAGTAGGTAACAGGTT...................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................ATGTGTAAATGCTACGCGGC............................................................................................................................ 20 2 4 0.25 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TGGCGGAGCTAGTGTGAGA........................................................................................... 19 3 12 0.08 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................TTAAGGTGGAGAGTGCAG............................................................................................................................................................... 18 2 15 0.07 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................GCGGCGCTAATCGGAGAAG......................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................................................................................................CGTTGGAGTTCGTAACGGGT....................... 20 3 18 0.06 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................TGTCAAGAGTTACGGTGGA....................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................GCGGCGCTCGTGCGAGAAGTT....................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13246:2073055-2073445 + dvi_21926 ACGAGGAACTGCCCGCCACCATGGATTCCTTCATGACCTTTATATTTATGGTATTTTTCTTA--CAC--ATTTTATTT-GCCAT---------------------------------TC---TCTTTCT------------------------------------------------------T--T--------------TGAG-------TATTGTTTTC---TTGTAGCCCAC----TTGAGTT---ACGGTTTGTAC-----------------------------------TTGG-------------TTTTATTACCTAGTTTGTAGAACTTTTTG--ACAT-----------------------------ATC-ATG------------TACC--------------------------------------------------------------------------------AGAAAAAAAAAAAAC----------ACTCCTGTCT---CCA----------TTTCTCAATTC-----CACCTCTAACGTTCTCTTTTCACGCATTC-ACACA-------------------TTTACGATGCGCAGGCCTCGGCAATTACGGCGCCGCGATCACACTCTTCACATCCTCCCTTAACGCCTCATTCAAAGTGTTCCGACAGCTCTTTAACAATCTCATGCATTGCCCATCCGAGTTTTTCGATACGACGCC
droMoj3 scaffold_6500:3905655-3906047 - ACGAAGAGTTGCCCGGCACCCTGGACTCTTGCATGACCTATATATTTATGGTATTTT-------TTT--TATTCATTT-TCTTC--------------TA-TTTCCCAATTT-----TT---TCTGTTTTT----CG-------C---------------------------------------GTG--------------AGTT-------TTCTTTGAATTTATTATAGCCAACAT--TTGTGTT---ACGGTTTGTAC-----------------------------------TTACGAACTACATTTAGTTTAGT-----------------TTCCTAGAATTT---AAGA---------------CTCTTACACC----------------------------G------------AAGATCTCT--------------------------------------------------------------------------GATCTCT---------G----------ATTCTCTATAA-----CTCTCTA-TCCATCACATATCA----------------------TCATATAT-----ATC-TACGTAGGTCTTTGCAATTACGGCGCCGCCATCACACTCTTCACATCCACTCTAAACGCCTCATTCAATATGTTTCGCCAACTCTTTAATAACCTCATGCATTGCCCATCTGAGTTTTACGATACGACGCC
droGri2 scaffold_15126:3857523-3857971 - ACGAAGAGTTGCCCGCCACCGTGGACTCCTTCATGACCTTTATATTTATGGTATTTTTCTTATGCAT----TTTATTT-GACTC---------------------------------TC---TCTCTCCCC----CACGCG---TT-------------------------------------------------------TTAT-------TATCTTACGT---TTGTAGCCCAC----TTGAGTT---ACGGTTTGTAAAACACCAACAAAAAAAAAAAACAACAACATAAAACTTAT-----------------------------------GTTTCTAGAAGT---TAAG-ATTTGCCTAATCTAATCTACACACC-ATG------------TACCA---------------------AAATCTCT--G---------------------------------------------------------------------TCTGTCTCT-------CTC----------TTTTTCTACTC-----CATATTC--CGTTCTTTTTTCATGCATTCGACACATACACATATTCATATTGATTTTATG--ATGAAGGTCTTTGCAATTACGGCGCCGCCATCACACTCTTCACATGCTCTCTTAACGCCTCATTCAAAGTGTTTCGACAGCTTTTTAATAATATCATGCACTGCCCATCTGAGTTTTTCGATACGACGCC
droWil2 scf2_1100000004585:2316903-2316999 - ATGAGGAATTGCCCGCCACAATGGATTCCTTTATGACCTTTATTTGGATGGTATTTG-------CAATTCATTGATTG-A--CC--------------AT-TTTTTTCTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT----------TTTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group4:361288-361721 + dps_1650 ACGAAGAGTTGCCCGCCACCCTGGACTCCTTTATGACCTTCATTTGGATGGTATTTG-------CAC--ATATACTTT-TACCTTACCTTAC------CT-TTTTCCAGTTC-----TC---TCCGTTCTC----CC-------A------------------GTTATTA------TTCTTATAA----------------AGAATATATTT-TTCTTTGGT---TTGTAGCGAATTATTATGAGTT---ATGGTTTGTAC-----------------------------------TGGC-------------------------------ACAAGTTTTCG--ATCT---AAGA---------------CTTATACATT-ATG------------AACTC-----------------------AACTCT--TTCTTCCATGAACACTCCGCTATCTACTATCTACTATCTCTTTGAATCAAAAACAAATCA----------------------------------------------AT-----------TCGA--------------ATCATTC-A--------------------------ACGAAAGTCAGGTCTCTGCAATTACGGCGCCGCCATAACACTCTTCACATGCACCCTACATGCCTCATCCAGAGTATTCCATCGACTGTTTAACAATCTCATGCACTGTCCGTCAGAGTTTTTTGATATAACGCC
droPer2 scaffold_68:76563-76996 - ACGAAGAGTTGCCCGCCACCCTGGACTCCTTTATGACCTTCATTTGGATGGTATTTG-------CAC--ATATACTTT-TACCTTACCTTAC------CT-TTTTCCAGTTC-----TC---TCCGTTCTC----CC-------A------------------GTTATTA------TTCTTATAA----------------AGAATATATTT-TTCTTTGGT---TTGTAGCGAATTATTATGAGTT---ATGGTTTGTAC-----------------------------------TGGC-------------------------------ACAAGTTTTCG--ATCT---AAGA---------------CTTATACATT-ATG------------AACTC-----------------------AACTCT--CTCTTCCATGAACACTCCGCTATCTACTATCTACTATCTCTTTGAATCAAAAACAAATCA----------------------------------------------AT-----------TCGA--------------ATCATTC-A--------------------------ACGAAAGTCAGGTCTCTGCAATTATGGCGCCGCCATAACACTCTTCACATGCACCCTACATGCCTCATCCAGAGTATTCCATCGACTGTTTAACAATCTCATGCACTGTCCGTCAGAGTTTTTTGATATAACGCC
droAna3 scaffold_12916:12671893-12672322 - ACGAAGAGTTGCCCGCCACCCTGGACTCCTTTATGACCTTTATTTGGATGGTATTTG-------CAT--ATTTGAACT-CCCCCA----------TATAT-ATTTTCAGCAAC-TA--T---TTACTTC--AAAATA----TTCCA---ATATTGATTTTGTTTCAATTA------------TT--T--------------TGAT-------TAATTTTAAT---TTGTAGGCTTTAA--AAAATTT---ATGGTTTGTAC-----------------------------------GGGA-------------------------------AAGACTTTTGAG-TTGAAGAAAG-TTTTCTC-----------------CAA-GTTTGCATTCATAT---------------ACACTTTAAAAAATCTCT--AC-------------------ATCT-TT-----------------------------------CTATCATTTAAACTCTCTC-----------------TTTCTCTATAA-----TCCACTGA-------------------------------------------------ACG-GAGGTAGTTATATGCAATTACGGCGCCGCCATAACCCTTTTCACAGCCACCCTACACGCCTCATCCAGGGTCTTCCATCGACTTTTTAACAACATCTTGCACTGTCCCTCCGAGTTCTTTGATATCACGCC
droBip1 scf7180000396769:1021439-1021855 - ACGAAGAGTTGCCCGCCACTCTGGACTCCTTTATGACCTTTATTTGGATGGTATTTT-------CAT--ATTTGAATT-CCCCCT------------TAT-ATTTTCAGTAAC-GA--T---TTATTTC--C------------AA---ATAT----TTTGTTTCGATTA------------TT--T--------------TGAT-------AAT-CTTGAA---TTGTAGGCTTTA---AAGATTT---ATGGTTTGTAC-----------------------------------GAGA-------------------------------AAAGCCTTTG---AGTTGAAAAGGTCTTCTC-----------------CAA-ATTTGCATTCACAT---------------ACACT-A--TATATCTCTCTTT-------------------------------------------------------------CTCTCATTTCAACTCTCTC-----TC----------TTCCTCTATAA-----TCCACTGA-----------------------TCTG------------GATAC-----AAC-CGGACAGTTGTATGCAATTACGGCGCCGCCATCACCCTTTTCACAGCCACCCTACACGCCTCATCCAGAGTTTTTCATCGACTTTTTAACAACATTTTGCACTGTCCCTCTGAGTTCTTTGATACCACGCC
droKik1 scf7180000302472:1130029-1130470 + ACGAAGAGTTGCCCGCCACCATGGACTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--ATTTGATCT-CCCCA--CCA--CCCAATTTT-TTTTTCAGTATT-TT--T---TCTCTCC--C------------TA---TTAT---------TGTTATAATTATCATTATTATTG----------------TGATCA-----AATTTTTGAT---TTGTAGCCTTTA---AAGAGTTACTACGGTTTGTAC-----------------------------------CTGC-------------------------------AGAACTTTCT---GGATAGAGAG-TTCTGTC-----------------C--------CATTCATATACATAAATCTCT--AACATT-CGATATATCTCTTTAT-------------------------------------------------------------CTCTCATTCGATCTCTCTCT----TT----------TTTCTCTGATGAACAACCCATTGA-------------------------------------------------ATC-GTGTTAGGCCTTTGCAATTACGGCGCCGCCATATCCCTTTTCACAGCCACCCTACACGCCTCATCGAGAGTATTCCATCGACTCTTTAACAATATCATGCATTGCCCCTCTGAGTTTTTCGATATAACGCC
droFic1 scf7180000453917:64474-64901 + ACGAAGAGTTGCCCGCCACCATGGACTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--AATTGATTT-CCCCCC-----AA------CT-TTTTTCAGTATT-TTATT---TCTCTTT--C------------TC---TTAT---------TGTTATTGTTATTGTTATTATT--A--------------TGAT-------AACTTTTGAT---TTGTAGCCTTTA---AAGAGTT---ACGGTTTGTAC-----------------------------------TCGC-------------------------------ATATCTTTCG---TTGTAGAAAGATTTTGCC-----------------CAG-ATTCTCATACATAT--------CTCT--AACATT-CGAAATATCTCT--TT-------------------------------------------------------------ATCCCATTTGATATCTCTCT-ATCTC----------TTTTTCTAACG-----CCCATCGA-------------------------------------------------ATC-AAGTTAGGCCTTTGCAATTACGGCGCCGCCATATCCCTTTTCACAGCCACCTTGCACGCCTCATCCAGAGTTTTCCATCGACTCTTTAACCACATTATGCATTGTCCCTCTGAGTTTTTCGATATCACGCC
droEle1 scf7180000491028:2358870-2359286 - ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--ATTTGATTTTCACCA--------------AT-TTTTTCAGTGTT-T---T---TCTTTTC--C------------CC---CTAC---------TGTTATTA------------CT--T--------------TGAT-------AACTTTTGAT---TTGTAGCCTTAA---AAGAGTT---ACGGTTTGTAC-----------------------------------GTGC-------------------------------AGAACCTTTG---TTGTGGCAAGGTTTTGCC-----------------CAA-AATCTCGTTCATAT--------CTCT--AACATT-TCAAATATCTCTCTTT-------------------ATCTCTT-----------------------------------ATCTCATTTTATCTCTCTG----TTC----------GATTTCTAATG-----CCCATTAA-------------------------------------------------AAC-AAGTTAGGTCTTTGCAATTACGGCGCCGCCATAACCCTTTTCACAGCCACCTTACATGCCTCATCCAGAGTGTTCCATCGACTCTTTAACCACATCATGCATTGTCCCTCTGAGTTTTTTGACATCACGCC
droRho1 scf7180000780043:651568-651966 + ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--ATTTGATTT-CCCCA--------------AT-TTTTTCAGTATT-TT--T---TCTCTTC--C------------CC---TTAC---------TGTTATTA------------CT--T--------------TGAT-------AACTTTTGAT---TTGTAGCCTTAA---AAGAGTT---ACGGTTTGTAC-----------------------------------ATGC-------------------------------AAAACTTTCG---TTTTGGAAAGGTTTTGCA-----------------CAA-ATATTCGTTCATAT--------CTCT--AACA----------TCTCTCTTT-------------------------------------------------------------ATCTCATTT-ATCTCTCCC-----TC----------GTTTTCTAATG-----TCCATTAA-------------------------------------------------ATC-AAGTTAGGTCTTTGCAATTACGGCGCCGCTATATCCCTTTTCACAGCCACCTTACATGCCTCATCTAGAGTATTCCATCGCCTCTTTAACCACATCATGCATTGTCCCTCTGAGTTTTTTGACATCACGCC
droBia1 scf7180000302422:212927-213333 - ACGAAGAGTTGCCCGCTACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT---TTTGATCT-TTCCC--------------A--TTTTGCAGTATT-TT--T---TCTCCCC--C------------TT---TTAT---------TGTTATTA------------TTGAT--------------TGAT-------AACTTTTGAT---TTGTAGCCTT-A---AAGTGTT---ACGGTTTGTAC-----------------------------------TGGC-------------------------------AGAACTTTCG---TTCTAGAAAGGATTTGCA-----------------CAA-GTTTTCATTCATAC--------CTCT--AACACT-TCAAACGTATCT--CT-------------------------------------------------------------ATCTCATTTGATCTCTCCC----CTC----------TTTTTCTAATG-----CTCATCGA-------------------------------------------------ATC-AAGTTAGGCCTTTGCAATTACGGCGCCGCCATATCACTTTTCACAGCCGCCCTACATGCCTCATCCAGAGTGTTTCACCGACTGTTTAACAACATCATGCATTGTCCCTCAAAGTTTTTCGATATCACGCC
droTak1 scf7180000415871:1093776-1094189 - ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--ATTTGATTT-CCCCA--------------AA-TTTTTCAGTAT------T---TCTCTCT--C--CTT-------TTTTATTGT---------TGTTATTA------------TTGAT--------------TGAT-------AACTTTTGAT---TTGTAGCCTTTA---AAGAGTT---ACGGTTTGTAC-----------------------------------TTGC-------------------------------AGAGCTTTCG---TTATAGAAAGATTTTGCC-----------------CAA-GTTTTCATTCACAT--------CTCTATAACATT-TGAAATATCTCT--TT-------------------------------------------------------------CTCTCATCGGATCTCTCTC-----TC----------TTTTTCTAATG-----CCCATTGA-------------------------------------------------ATC-GAGTTAGGCCTTTGCAATTACGGTGCCGCCATCTCACTTTTCACAGCCACCTTACACGCCTCATCCAGAGTATTCCATCGACTCTTTAACAACATCATGCACTGTCCCTCTGAGTTTTTCGATATCACGCC
droEug1 scf7180000409122:1121518-1121956 + ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--ATTTCATTA-CCCCA--ACTTAT-----TTG-TTTTTCAGTATT-TT--T---TCTCTTT--C------------CT---TTAT----TT---TGTTATTA------------TTGATTAATAAGTTATAAATGAT-------AACTTTTGAT---TTGTAGCTATAC---AAGAGTT---ACGGTTTGTAC-----------------------------------TTGC-------------------------------ATAACTTTCG---TTGTAGAAAGATTTTTCC-----------------CGAAGTTTTCACTCATAT------CTCTCT--AACATT-AATAATATCTCT--TT-------------------------------------------------------------ATCCCATTTGAACTCTCTC-CCTCTC----------TTTCTCTAATG-----CCCATTAA-------------------------------------------------ATC-AAGTTAGGGCTTTGCAATTACGGCGCCGCCATTTCACTTTTCACAGCTACCTTACACGCCTCATCTAGAGTATTCCATCGACTCTTTAACAACATCATGCATTGTCCCTCTGAGTTTTTCGATATCACGCC
dm3 chr2L:12735818-12736159 + AT--------------------------------------------------------------------------------------------------------------T-TT--T---TCTTTCC--A--CCC-------CT---TTAT---------TGTTATTA------------TTGAT--------------CGAT-------AACCTTTGAT---TTGTAGCCCTTAA--AAGAGTT---ACGGTTTGTAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTAGAAAGATTTTGCC-----------------CAC-GTTTTCATTCATAT--------CTCT--AGCATT-TGATATATCTCTCTAT-------------------------------------------------------------ATCTCATTTGATCTCTCTA-TCTCTCTATA--TATATTTCTTTAAAC-----CACATCGA-------------------------------------------------ATC-AAGCTAGGTCTTTGCAATTACGGCGCCGCCATATCACTTTTCACAGCCACCCTACACGCCTCATCCAGAGTTTTCCATCGACTCTTTAACAACATTATGCATTGTCCCTCCGAGTTTTTCGATACCACGCC
droSim2 2l:12379890-12380319 + dsi_30585 ACGAAGAGTTGCCCGCCACCATGGACTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--AATTGATTT-CGCTC--------------AT-TTTTTCAGTATATTT--T---TCTTCCC--C--CCC-------TT---TTAT---------TGTTATTA------------TTGAT--------------TGAT-------AACCTTTGAT---TTGTAGCCCTTAA--AAGAGTT---ACGGTTTGTAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTAGAAAGATTTTGCC-----------------CAC-GTTTTCATTCATCT--------CTCT--AGCATT-TGATATATCTCTCTAT-------------------------------------------------------------ATCTCATTTGATCTCTCTA-TCTCTCTATATATATATTTCTCTAAAC-----CGCATCGA-------------------------------------------------ATC-AAGCTAGGTCTTTGCAATTACGGCGCCGCCATATCACTTTTCACCGCCACCTTACACGCCTCATCCAGAGTTTTCCATCGACTCTTTAACAACATCATGCATTGTCCCTCCGAGTTTTTCGATACCACGCC
droSec2 scaffold_16:915122-915548 + ACGAAGAGTTGCCCGCCACCATGGACTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--AATTGATTT-CGCTC--------------AT-TTTTTCAGTATATTT--T---TCTTTCC--C--CCCC-CC---TT---TTAT---------TGTTATTA------------TTGAT--------------TGAT-------AACCTTTGAT---TTGTAGCCCTTAA--AAGAGTT---ACGGTTTGTAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTAGAAAGATTTTGCC-----------------CTC-GTTTTCATTCATAT--------CTCT--AGCATT-TGATATATCTCTCTAT-------------------------------------------------------------ATCTCATTTGATCTATCTC-----TCTATA--TATATTTCTCTAAAC-----CGCATCGA-------------------------------------------------ATC-AAGCTAGGTCTTTGCAATTACGGCGCCGCCATATCACTTTTCACAGCCACCCTACAGGCCTCATCCAGAGTTTTCCATCGACTCTTTAACAACATCATGCATTGTCCCTCCGAGTTTTTCGATACCACGCC
droYak3 2L:9169978-9170398 + ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--AATTGATTT-CGCTC--------------AT-TTTTTCAGTATA-TT--T---TCTGCCC--C--CCT-------CTTTATTAT---------TGTTATTA------------TTGAT--------------TGAT-------AACTTTTGAT---TTGTAGCCCTTA---AAGAGTT---ACGGTTTGTAC-----------------------------------TAGC-------------------------------AGAACTTTCG---TTGTAGAAAGATTTTGCC-----------------CTC-GTTTTCATACATAT--------CTCTCCAGCATT-TGAAATATCTCTCTAT-------------------------------------------------------------ATCTCATTTGATCTCTTTCT---CTA----------TTTCTCTAAAC-----CGCATCAT-------------------------------------------------ATC-AAGCTAGGTCTTTGCAATTACGGCGCCGCCATATCACTTTTTACAGCCACCCTACACGCCTCATCCAGAGTTTTCCATCGACTCTTTAACAACATCATGCATTGTCCCTCCGAGTTTTTCGATACCACGCC
droEre2 scaffold_4929:12690484-12690897 - ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--AATTGATTT-CGCTC--------------ATTTTTTACAGTATA-T---TTCTCCTCCC-------CC-------CT---TTAT---------TGTTATTA------------TTGAT--------------TGAT-------AACTTTTGAT---TTGTAGCCCTTA---AAGAGTT---ACGGTTTGTAC-----------------------------------CTGC-------------------------------AGAACTTTCG---TTGTAGAAAGATTTTGCC-----------------CAC-GTTTTCATACATAT--------CTCT--AGCATT-TGAAATATCTCC--AT-------------------------------------------------------------ATCTCATTTGATCTCTTTCT---CTA----------TTTCTCCAAAC-----CGCATCAA-------------------------------------------------ATC-AAGCTAGGTCTTTGCAATTACGGCGCCGCCATATCACTTTTCACAGCCACCCTACACGCCTCATCCAGAGTTTTCCATCGACTCTTTAACAACATCATGCATTGTCCCTCCGAGTTTTTCGATACCACGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ACGAGGAACTGCCCGCCACCATGGATTCCTTCATGACCTTTATATTTATGGTATTTTTCTTA--CAC--ATTTTATTT-GCCAT---------------------------------TC---TCTTTCT------------------------------------------------------T--T--------------TGAG-------TATTGTTTTC---TTGTAGCCCAC----TTGAGTT---ACGGTTTGTAC-----------------------------------TTGG-------------TTTTATTACCTAGTTTGTAGAACTTTTTG--ACAT-----------------------------ATC-ATG------------TACC--------------------------------------------------------------------------------AGAAAAAAAAAAAAC----------ACTCCTGTCT---CCA----------TTTCTCAATTC-----CACCTCTAACGTTCTCTTTTCACGCATTC-ACACA-------------------TTTACGATGCGCAGGCCTCGGCAATTACGGCGCCGCGATCACACTCTTCACATCCTCCCTTAACGCCTCATTCAAAGTGTTCCGACAGCTCTTTAACAATCTCATGCATTGCCCATCCGAGTTTTTCGATACGACGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................AGTTTGTAGAACTTTTTG--AC.........................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000002
..............................................................................................................................................................................................................................................................................................................................................ACTTTTTG--ACAT-----------------------------ATC-ATG------------TACC--------------------------------------------------------------------------------AGAAA..............................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGTGTTCCGACAGCTCTT.............................................2111.001000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-ACACA-------------------TTTACGATGCGCAGGC..........................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATGCATTGCCCATCCGAGTTTTTC...........2611.001000000000000000000000000000000000000000000000000000000000000001
..........................................................................................................................TCTTTCT------------------------------------------------------T--T--------------TGAG-------TATTGTTTTC---T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACA-------------------TTTACGATGCGCAGGC..........................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCATTCAAAGTGTTCCGACAGCT................................................2611.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
ACGAAGAGTTGCCCGGCACCCTGGACTCTTGCATGACCTATATATTTATGGTATTTT-------TTT--TATTCATTT-TCTTC--------------TA-TTTCCCAATTT-----TT---TCTGTTTTT----CG-------C---------------------------------------GTG--------------AGTT-------TTCTTTGAATTTATTATAGCCAACAT--TTGTGTT---ACGGTTTGTAC-----------------------------------TTACGAACTACATTTAGTTTAGT-----------------TTCCTAGAATTT---AAGA---------------CTCTTACACC----------------------------G------------AAGATCTCT--------------------------------------------------------------------------GATCTCT---------G----------ATTCTCTATAA-----CTCTCTA-TCCATCACATATCA----------------------TCATATAT-----ATC-TACGTAGGTCTTTGCAATTACGGCGCCGCCATCACACTCTTCACATCCACTCTAAACGCCTCATTCAATATGTTTCGCCAACTCTTTAATAACCTCATGCATTGCCCATCTGAGTTTTACGATACGACGCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................TTAGT-----------------TTCCTAGAATTT---AAGA---------------CTCTTA...........................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TACGTAGGTCTTTGCAAT.................................................................................................................1911.001001000
droGri2
ACGAAGAGTTGCCCGCCACCGTGGACTCCTTCATGACCTTTATATTTATGGTATTTTTCTTATGCAT----TTTATTT-GACTC---------------------------------TC---TCTCTCCCC----CACGCG---TT-------------------------------------------------------TTAT-------TATCTTACGT---TTGTAGCCCAC----TTGAGTT---ACGGTTTGTAAAACACCAACAAAAAAAAAAAACAACAACATAAAACTTAT-----------------------------------GTTTCTAGAAGT---TAAG-ATTTGCCTAATCTAATCTACACACC-ATG------------TACCA---------------------AAATCTCT--G---------------------------------------------------------------------TCTGTCTCT-------CTC----------TTTTTCTACTC-----CATATTC--CGTTCTTTTTTCATGCATTCGACACATACACATATTCATATTGATTTTATG--ATGAAGGTCTTTGCAATTACGGCGCCGCCATCACACTCTTCACATGCTCTCTTAACGCCTCATTCAAAGTGTTTCGACAGCTTTTTAATAATATCATGCACTGCCCATCTGAGTTTTTCGATACGACGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATGAGGAATTGCCCGCCACAATGGATTCCTTTATGACCTTTATTTGGATGGTATTTG-------CAATTCATTGATTG-A--CC--------------AT-TTTTTTCTTCTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT----------TTTTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................CTTTATTTGGATGGTATTTG-------CAATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.....................................CTTTATTTGGATGGTATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
dp5
ACGAAGAGTTGCCCGCCACCCTGGACTCCTTTATGACCTTCATTTGGATGGTATTTG-------CAC--ATATACTTT-TACCTTACCTTAC------CT-TTTTCCAGTTC-----TC---TCCGTTCTC----CC-------A------------------GTTATTA------TTCTTATAA----------------AGAATATATTT-TTCTTTGGT---TTGTAGCGAATTATTATGAGTT---ATGGTTTGTAC-----------------------------------TGGC-------------------------------ACAAGTTTTCG--ATCT---AAGA---------------CTTATACATT-ATG------------AACTC-----------------------AACTCT--TTCTTCCATGAACACTCCGCTATCTACTATCTACTATCTCTTTGAATCAAAAACAAATCA----------------------------------------------AT-----------TCGA--------------ATCATTC-A--------------------------ACGAAAGTCAGGTCTCTGCAATTACGGCGCCGCCATAACACTCTTCACATGCACCCTACATGCCTCATCCAGAGTATTCCATCGACTGTTTAACAATCTCATGCACTGTCCGTCAGAGTTTTTTGATATAACGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................ATATATTT-TTCTTTGGT---TTGTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000002
......................................................................................................................................................................................................................................................T---ATGGTTTGTAC-----------------------------------TGGC-------------------------------ACAA....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................................................................................................................................................T---ATGGTTTGTAC-----------------------------------TGGC-------------------------------ACAAGT..................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTCTCTGCAATTACGGCGC.........................................................................................................2111.0010001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACGGCGCCGCCATAAC................................................................................................1911.0010000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTATCTACTATCTCTTTG.......................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
ACGAAGAGTTGCCCGCCACCCTGGACTCCTTTATGACCTTCATTTGGATGGTATTTG-------CAC--ATATACTTT-TACCTTACCTTAC------CT-TTTTCCAGTTC-----TC---TCCGTTCTC----CC-------A------------------GTTATTA------TTCTTATAA----------------AGAATATATTT-TTCTTTGGT---TTGTAGCGAATTATTATGAGTT---ATGGTTTGTAC-----------------------------------TGGC-------------------------------ACAAGTTTTCG--ATCT---AAGA---------------CTTATACATT-ATG------------AACTC-----------------------AACTCT--CTCTTCCATGAACACTCCGCTATCTACTATCTACTATCTCTTTGAATCAAAAACAAATCA----------------------------------------------AT-----------TCGA--------------ATCATTC-A--------------------------ACGAAAGTCAGGTCTCTGCAATTATGGCGCCGCCATAACACTCTTCACATGCACCCTACATGCCTCATCCAGAGTATTCCATCGACTGTTTAACAATCTCATGCACTGTCCGTCAGAGTTTTTTGATATAACGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------ACGAAAGTCAGGTCTCC......................................................................................................................1812.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCATCGACTGTTTAACA........................................2012.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCATCGACTGTTTAA..........................................1811.001100000
........................................................................................................................................................................................................................................................................................................................................................ATCT---AAGA---------------CTTATACATT-ATG------------AACT...................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................................................................................................................................TT-TTCTTTGGT---TTGTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................GA---------------CTTATACATT-ATG------------AACTC-----------------------AAC........................................................................................................................................................................................................................................................................................................................2311.001010000
......................................................................................................................................................................................................................................................T---ATGGTTTGTAC-----------------------------------TGGC-------------------------------ACAA....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCATCGACTGTTTAACAAT......................................2411.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAAGTCAGGTCTCTGC....................................................................................................................1911.001010000
...................................................................................................................................................................................................................................GTAGCGAATTATTATGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
droAna3
ACGAAGAGTTGCCCGCCACCCTGGACTCCTTTATGACCTTTATTTGGATGGTATTTG-------CAT--ATTTGAACT-CCCCCA----------TATAT-ATTTTCAGCAAC-TA--T---TTACTTC--AAAATA----TTCCA---ATATTGATTTTGTTTCAATTA------------TT--T--------------TGAT-------TAATTTTAAT---TTGTAGGCTTTAA--AAAATTT---ATGGTTTGTAC-----------------------------------GGGA-------------------------------AAGACTTTTGAG-TTGAAGAAAG-TTTTCTC-----------------CAA-GTTTGCATTCATAT---------------ACACTTTAAAAAATCTCT--AC-------------------ATCT-TT-----------------------------------CTATCATTTAAACTCTCTC-----------------TTTCTCTATAA-----TCCACTGA-------------------------------------------------ACG-GAGGTAGTTATATGCAATTACGGCGCCGCCATAACCCTTTTCACAGCCACCCTACACGCCTCATCCAGGGTCTTCCATCGACTTTTTAACAACATCTTGCACTGTCCCTCCGAGTTCTTTGATATCACGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................AG-TTTTCTC-----------------CAA-GTTTGCA.............................................................................................................................................................................................................................................................................................................................................................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACAACATCTTGCACTGTCCCTCCGG..................2811.001010000
......................................................................................................................................................................................................................................................T---ATGGTTTGTAC-----------------------------------GGGA-------------------------------AAGACT..................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTATAA-----TCCACTGA-------------------------------------------------ACG-GAGGT..............................................................................................................................2411.001000010
.....................................................................................................................................................................................................................AATTTTAAT---TTGTAGGCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
ACGAAGAGTTGCCCGCCACTCTGGACTCCTTTATGACCTTTATTTGGATGGTATTTT-------CAT--ATTTGAATT-CCCCCT------------TAT-ATTTTCAGTAAC-GA--T---TTATTTC--C------------AA---ATAT----TTTGTTTCGATTA------------TT--T--------------TGAT-------AAT-CTTGAA---TTGTAGGCTTTA---AAGATTT---ATGGTTTGTAC-----------------------------------GAGA-------------------------------AAAGCCTTTG---AGTTGAAAAGGTCTTCTC-----------------CAA-ATTTGCATTCACAT---------------ACACT-A--TATATCTCTCTTT-------------------------------------------------------------CTCTCATTTCAACTCTCTC-----TC----------TTCCTCTATAA-----TCCACTGA-----------------------TCTG------------GATAC-----AAC-CGGACAGTTGTATGCAATTACGGCGCCGCCATCACCCTTTTCACAGCCACCCTACACGCCTCATCCAGAGTTTTTCATCGACTTTTTAACAACATTTTGCACTGTCCCTCTGAGTTCTTTGATACCACGCCSizeHit CountTotal NormTotal
No Reads
droKik1
ACGAAGAGTTGCCCGCCACCATGGACTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--ATTTGATCT-CCCCA--CCA--CCCAATTTT-TTTTTCAGTATT-TT--T---TCTCTCC--C------------TA---TTAT---------TGTTATAATTATCATTATTATTG----------------TGATCA-----AATTTTTGAT---TTGTAGCCTTTA---AAGAGTTACTACGGTTTGTAC-----------------------------------CTGC-------------------------------AGAACTTTCT---GGATAGAGAG-TTCTGTC-----------------C--------CATTCATATACATAAATCTCT--AACATT-CGATATATCTCTTTAT-------------------------------------------------------------CTCTCATTCGATCTCTCTCT----TT----------TTTCTCTGATGAACAACCCATTGA-------------------------------------------------ATC-GTGTTAGGCCTTTGCAATTACGGCGCCGCCATATCCCTTTTCACAGCCACCCTACACGCCTCATCGAGAGTATTCCATCGACTCTTTAACAATATCATGCATTGCCCCTCTGAGTTTTTCGATATAACGCCSizeHit CountTotal NormTotal
No Reads
droFic1
ACGAAGAGTTGCCCGCCACCATGGACTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--AATTGATTT-CCCCCC-----AA------CT-TTTTTCAGTATT-TTATT---TCTCTTT--C------------TC---TTAT---------TGTTATTGTTATTGTTATTATT--A--------------TGAT-------AACTTTTGAT---TTGTAGCCTTTA---AAGAGTT---ACGGTTTGTAC-----------------------------------TCGC-------------------------------ATATCTTTCG---TTGTAGAAAGATTTTGCC-----------------CAG-ATTCTCATACATAT--------CTCT--AACATT-CGAAATATCTCT--TT-------------------------------------------------------------ATCCCATTTGATATCTCTCT-ATCTC----------TTTTTCTAACG-----CCCATCGA-------------------------------------------------ATC-AAGTTAGGCCTTTGCAATTACGGCGCCGCCATATCCCTTTTCACAGCCACCTTGCACGCCTCATCCAGAGTTTTCCATCGACTCTTTAACCACATTATGCATTGTCCCTCTGAGTTTTTCGATATCACGCCSizeHit CountTotal NormTotal
No Reads
droEle1
ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--ATTTGATTTTCACCA--------------AT-TTTTTCAGTGTT-T---T---TCTTTTC--C------------CC---CTAC---------TGTTATTA------------CT--T--------------TGAT-------AACTTTTGAT---TTGTAGCCTTAA---AAGAGTT---ACGGTTTGTAC-----------------------------------GTGC-------------------------------AGAACCTTTG---TTGTGGCAAGGTTTTGCC-----------------CAA-AATCTCGTTCATAT--------CTCT--AACATT-TCAAATATCTCTCTTT-------------------ATCTCTT-----------------------------------ATCTCATTTTATCTCTCTG----TTC----------GATTTCTAATG-----CCCATTAA-------------------------------------------------AAC-AAGTTAGGTCTTTGCAATTACGGCGCCGCCATAACCCTTTTCACAGCCACCTTACATGCCTCATCCAGAGTGTTCCATCGACTCTTTAACCACATCATGCATTGTCCCTCTGAGTTTTTTGACATCACGCCSizeHit CountTotal NormTotal
No Reads
droRho1
ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--ATTTGATTT-CCCCA--------------AT-TTTTTCAGTATT-TT--T---TCTCTTC--C------------CC---TTAC---------TGTTATTA------------CT--T--------------TGAT-------AACTTTTGAT---TTGTAGCCTTAA---AAGAGTT---ACGGTTTGTAC-----------------------------------ATGC-------------------------------AAAACTTTCG---TTTTGGAAAGGTTTTGCA-----------------CAA-ATATTCGTTCATAT--------CTCT--AACA----------TCTCTCTTT-------------------------------------------------------------ATCTCATTT-ATCTCTCCC-----TC----------GTTTTCTAATG-----TCCATTAA-------------------------------------------------ATC-AAGTTAGGTCTTTGCAATTACGGCGCCGCTATATCCCTTTTCACAGCCACCTTACATGCCTCATCTAGAGTATTCCATCGCCTCTTTAACCACATCATGCATTGTCCCTCTGAGTTTTTTGACATCACGCCSizeHit CountTotal NormTotal
No Reads
droBia1
ACGAAGAGTTGCCCGCTACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT---TTTGATCT-TTCCC--------------A--TTTTGCAGTATT-TT--T---TCTCCCC--C------------TT---TTAT---------TGTTATTA------------TTGAT--------------TGAT-------AACTTTTGAT---TTGTAGCCTT-A---AAGTGTT---ACGGTTTGTAC-----------------------------------TGGC-------------------------------AGAACTTTCG---TTCTAGAAAGGATTTGCA-----------------CAA-GTTTTCATTCATAC--------CTCT--AACACT-TCAAACGTATCT--CT-------------------------------------------------------------ATCTCATTTGATCTCTCCC----CTC----------TTTTTCTAATG-----CTCATCGA-------------------------------------------------ATC-AAGTTAGGCCTTTGCAATTACGGCGCCGCCATATCACTTTTCACAGCCGCCCTACATGCCTCATCCAGAGTGTTTCACCGACTGTTTAACAACATCATGCATTGTCCCTCAAAGTTTTTCGATATCACGCCSizeHit CountTotal NormTotal
No Reads
droTak1
ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--ATTTGATTT-CCCCA--------------AA-TTTTTCAGTAT------T---TCTCTCT--C--CTT-------TTTTATTGT---------TGTTATTA------------TTGAT--------------TGAT-------AACTTTTGAT---TTGTAGCCTTTA---AAGAGTT---ACGGTTTGTAC-----------------------------------TTGC-------------------------------AGAGCTTTCG---TTATAGAAAGATTTTGCC-----------------CAA-GTTTTCATTCACAT--------CTCTATAACATT-TGAAATATCTCT--TT-------------------------------------------------------------CTCTCATCGGATCTCTCTC-----TC----------TTTTTCTAATG-----CCCATTGA-------------------------------------------------ATC-GAGTTAGGCCTTTGCAATTACGGTGCCGCCATCTCACTTTTCACAGCCACCTTACACGCCTCATCCAGAGTATTCCATCGACTCTTTAACAACATCATGCACTGTCCCTCTGAGTTTTTCGATATCACGCCSizeHit CountTotal NormTotal
No Reads
droEug1
ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--ATTTCATTA-CCCCA--ACTTAT-----TTG-TTTTTCAGTATT-TT--T---TCTCTTT--C------------CT---TTAT----TT---TGTTATTA------------TTGATTAATAAGTTATAAATGAT-------AACTTTTGAT---TTGTAGCTATAC---AAGAGTT---ACGGTTTGTAC-----------------------------------TTGC-------------------------------ATAACTTTCG---TTGTAGAAAGATTTTTCC-----------------CGAAGTTTTCACTCATAT------CTCTCT--AACATT-AATAATATCTCT--TT-------------------------------------------------------------ATCCCATTTGAACTCTCTC-CCTCTC----------TTTCTCTAATG-----CCCATTAA-------------------------------------------------ATC-AAGTTAGGGCTTTGCAATTACGGCGCCGCCATTTCACTTTTCACAGCTACCTTACACGCCTCATCTAGAGTATTCCATCGACTCTTTAACAACATCATGCATTGTCCCTCTGAGTTTTTCGATATCACGCCSizeHit CountTotal NormTotal
No Reads
dm3
AT--------------------------------------------------------------------------------------------------------------T-TT--T---TCTTTCC--A--CCC-------CT---TTAT---------TGTTATTA------------TTGAT--------------CGAT-------AACCTTTGAT---TTGTAGCCCTTAA--AAGAGTT---ACGGTTTGTAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTAGAAAGATTTTGCC-----------------CAC-GTTTTCATTCATAT--------CTCT--AGCATT-TGATATATCTCTCTAT-------------------------------------------------------------ATCTCATTTGATCTCTCTA-TCTCTCTATA--TATATTTCTTTAAAC-----CACATCGA-------------------------------------------------ATC-AAGCTAGGTCTTTGCAATTACGGCGCCGCCATATCACTTTTCACAGCCACCCTACACGCCTCATCCAGAGTTTTCCATCGACTCTTTAACAACATTATGCATTGTCCCTCCGAGTTTTTCGATACCACGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................TGC-------------------------------AGAACTTTCG---TTGTAGAAAGA................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000
........................................................................................................................................................................................................................................................................................................TTGC-------------------------------AGAACTTTCG---TTGTAGAAAGA................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...........................................................................................................................................................................................................................................TAA--AAGAGTT---ACGGTTTGTAC-----------------------------------TTGC-------------------------------AGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TTGC-------------------------------AGAACTTTCG---TTGTAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCCACCCTACACGCCTCATCCAGAA.............................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TTTGTAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTA......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTAGAAAGA................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................TGC-------------------------------AGAACTTTCG---TTGTAGAAAGAT...............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAGTTTTCCATCGACTCTTTAAC.........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACGCCTCATCCAGAGTTTTCCATC....................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAC-----CACATCGA-------------------------------------------------ATC-AAGCTAGG...........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TGTAGCCCTTAA--AAGAGTT---ACGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTCG---TTGTAGAAAGATTTTGCC-----------------CAC-G...................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................C-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTAGAAAGAT...............................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................T---ACGGTTTGTAC-----------------------------------TTGC-------------------------------AGAACTTTCG---T..........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTATA--TATATTTCTTT.........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTACGGCGCCGCCATATC................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATCGACTCTTTAACA........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................AT--------------CGAT-------AACCTTTGAT---TTGTAGCCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATTGTCCCTCCGAGTTTT.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TTGTAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTAGA....................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAC-----CACATCGA-------------------------------------------------ATC-AAGCTAGGTCT........................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAAAC-----CACATCGA-------------------------------------------------ATC-...................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGCAATTACGGCGCCGCCATA..................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................TAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGT.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CTTTCC--A--CCC-------CT---TTAT---------TGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................TGC-------------------------------AGAACTTTCG---TTGTAGA....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................T--------CTCT--AGCATT-TGATATATCTCTCTAT-------------------------------------------------------------A...................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTTGCAATTACGGCGC.........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.T--------------------------------------------------------------------------------------------------------------T-TT--T---TCTTTCC--A--CCC-------CT---TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AT-------AACCTTTGAT---TTGTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droSim2
ACGAAGAGTTGCCCGCCACCATGGACTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--AATTGATTT-CGCTC--------------AT-TTTTTCAGTATATTT--T---TCTTCCC--C--CCC-------TT---TTAT---------TGTTATTA------------TTGAT--------------TGAT-------AACCTTTGAT---TTGTAGCCCTTAA--AAGAGTT---ACGGTTTGTAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTAGAAAGATTTTGCC-----------------CAC-GTTTTCATTCATCT--------CTCT--AGCATT-TGATATATCTCTCTAT-------------------------------------------------------------ATCTCATTTGATCTCTCTA-TCTCTCTATATATATATTTCTCTAAAC-----CGCATCGA-------------------------------------------------ATC-AAGCTAGGTCTTTGCAATTACGGCGCCGCCATATCACTTTTCACCGCCACCTTACACGCCTCATCCAGAGTTTTCCATCGACTCTTTAACAACATCATGCATTGTCCCTCCGAGTTTTTCGATACCACGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGATCTCTCTA-TCTCT...........................................................................................................................................................................................................................2012.00200200000000000000
..........................................................................................................................................................................................................................TGAT---TTGTAGCCCTTAA--AAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGAGTTTTTCGATACCACGCC2411.00100001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCCCTCCGAGTTTTTCGATA.......2411.00100010000000000000
..................CCATGGACTCCTTTATGACCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
...............................................................................................................................................................................................................................................................TTGTAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTAGA....................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
................................................................................................................................................................................................................................................................TGTAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTAGA....................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................AGATTTTGCC-----------------CAC-GTTTTCAT............................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
............................................................................................................................................................................................................T-------AACCTTTGAT---TTGTAGCCCTTAA--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
........................................................................................................................................................................................GAT--------------TGAT-------AACCTTTGAT---TTGTAGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
................................................TGGTATTTG-------CAT--AATTGATTT-CGCTC--------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
droSec2
ACGAAGAGTTGCCCGCCACCATGGACTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--AATTGATTT-CGCTC--------------AT-TTTTTCAGTATATTT--T---TCTTTCC--C--CCCC-CC---TT---TTAT---------TGTTATTA------------TTGAT--------------TGAT-------AACCTTTGAT---TTGTAGCCCTTAA--AAGAGTT---ACGGTTTGTAC-----------------------------------TTGC-------------------------------AGAACTTTCG---TTGTAGAAAGATTTTGCC-----------------CTC-GTTTTCATTCATAT--------CTCT--AGCATT-TGATATATCTCTCTAT-------------------------------------------------------------ATCTCATTTGATCTATCTC-----TCTATA--TATATTTCTCTAAAC-----CGCATCGA-------------------------------------------------ATC-AAGCTAGGTCTTTGCAATTACGGCGCCGCCATATCACTTTTCACAGCCACCCTACAGGCCTCATCCAGAGTTTTCCATCGACTCTTTAACAACATCATGCATTGTCCCTCCGAGTTTTTCGATACCACGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTCTAT-------------------------------------------------------------ATCTCATTTGATCT......................................................................................................................................................................................................................................2411.0010010
droYak3
ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--AATTGATTT-CGCTC--------------AT-TTTTTCAGTATA-TT--T---TCTGCCC--C--CCT-------CTTTATTAT---------TGTTATTA------------TTGAT--------------TGAT-------AACTTTTGAT---TTGTAGCCCTTA---AAGAGTT---ACGGTTTGTAC-----------------------------------TAGC-------------------------------AGAACTTTCG---TTGTAGAAAGATTTTGCC-----------------CTC-GTTTTCATACATAT--------CTCTCCAGCATT-TGAAATATCTCTCTAT-------------------------------------------------------------ATCTCATTTGATCTCTTTCT---CTA----------TTTCTCTAAAC-----CGCATCAT-------------------------------------------------ATC-AAGCTAGGTCTTTGCAATTACGGCGCCGCCATATCACTTTTTACAGCCACCCTACACGCCTCATCCAGAGTTTTCCATCGACTCTTTAACAACATCATGCATTGTCCCTCCGAGTTTTTCGATACCACGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................T---TTGTAGCCCTTA---AAGAGTT---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............................................................................................................TA-TT--T---TCTGCCC--C--CCT-------CTTTATTAT---------TGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000
......................................................................................................................................................................................................................................................T---ACGGTTTGTAC-----------------------------------TAGC-------------------------------AGAACTT.................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................................................................................................................................................................................CTTA---AAGAGTT---ACGGTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......................................................................................................................................................................ATTA------------TTGAT--------------TGAT-------AACTTTTGAT---TTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
......................................................................................................................................................................................................................CTTTTGAT---TTGTAGCCCTTA---AAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...AAGAGTTGCCCGCCACCATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCAATTACGGCGCCGCCATAC.................................................................................................2511.00100100000000
.............................................................................................................................................................................................................................................................GTTTGTAC-----------------------------------TAGC-------------------------------AGAACTTTCG---TTGT.......................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
......................................................................................................................................................................ATTA------------TTGAT--------------TGAT-------AACTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGTCTTTGCAATTACGGCGC.........................................................................................................2211.00101000000000
.........................................ATCTTTATGGTATTTG-------CAT--A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000
droEre2
ACGAAGAGTTGCCCGCCACCATGGATTCCTTTATGACCTTTATCTTTATGGTATTTG-------CAT--AATTGATTT-CGCTC--------------ATTTTTTACAGTATA-T---TTCTCCTCCC-------CC-------CT---TTAT---------TGTTATTA------------TTGAT--------------TGAT-------AACTTTTGAT---TTGTAGCCCTTA---AAGAGTT---ACGGTTTGTAC-----------------------------------CTGC-------------------------------AGAACTTTCG---TTGTAGAAAGATTTTGCC-----------------CAC-GTTTTCATACATAT--------CTCT--AGCATT-TGAAATATCTCC--AT-------------------------------------------------------------ATCTCATTTGATCTCTTTCT---CTA----------TTTCTCCAAAC-----CGCATCAA-------------------------------------------------ATC-AAGCTAGGTCTTTGCAATTACGGCGCCGCCATATCACTTTTCACAGCCACCCTACACGCCTCATCCAGAGTTTTCCATCGACTCTTTAACAACATCATGCATTGTCCCTCCGAGTTTTTCGATACCACGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................ATACATAT--------CTCT--AGCATT-TGAA.............................................................................................................................................................................................................................................................................................................................2211.0010000100
................................................................................................................................................................................................................................................................TGTAC-----------------------------------CTGC-------------------------------AGAACTTTCG---TTGTAGAA...................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
...................................................................................................................................................................................................................................................................................................................................................CG---TTGTAGAAAGATTTTGCC-----------------CAC-GT..................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
.......................................................................................................................................................AT---------TGTTATTA------------TTGAT--------------TGAT-------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000

Generated: 05/21/2015 at 04:39 PM