ID:

dvi_21906

 Coordinate:

scaffold_13246:271303-271453 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.3 -11.2 -11.1

Flybase annnotation

CDS [Dvir\GJ16201-cds]; exon [dvir_GLEANR_16646:4]; intron [Dvir\GJ16201-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGTCATTGCATACCGTGAAAGTGGATACAAAAAGCTATAGCTATGAGGCGTAAGTAGATCAAAATTTCATATTAATTATTATTCTTACATCAGAACAGAGAACTTTTATGAAACTAAAACAATGTTGATAACATAAGTAGTTAACTGTCTTTTCCCCATTACGTAACAGGCGATAAGACGGTCAAAATATGTGCTCAAGGTTTTGGTTGATATCATGGTTATCAACGAAAAAATTGCAAATCATTTTCAA
************************************************************************************............(((..((((((((((.......(((...))).....)))))).))))..)))((((.((.((...........)).)).))))..********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060667
160_females_carcasses_total
 M047
female body
 SRR060664
9_males_carcasses_total
 V053
head
 M028
head
 SRR060666
160_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060673
9_ovaries_total
 M027
male body		 SRR060669
160x9_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 M061
embryo
 SRR060654
160x9_ovaries_total
 SRR060668
160x9_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060683
160_testes_total
 V047
embryo
 SRR1106728
larvae
 SRR060663
160_0-2h_embryos_total
 SRR1106727
larvae
 SRR060687
9_0-2h_embryos_total
....................................................................................CTTACATCAGAACAGAGAACT.................................................................................................................................................. 21 0 1 10.00 10 4 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................ATGTGCTCAAGGTTTTGGTTG......................................... 21 0 1 9.00 9 3 1 0 0 1 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
CAGTCATTGCATACCGTGAAA...................................................................................................................................................................................................................................... 21 0 1 3.00 3 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATATGTGCTCAAGGTTTTGGT........................................... 21 0 1 3.00 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................TATGAGGCGTAAGTAGATCAA............................................................................................................................................................................................ 21 0 1 3.00 3 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TATGAGGCGTAAGTAGATCA............................................................................................................................................................................................. 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TATGTGCTCAAGGTTTTGGTT.......................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATATCATGGTTATCAACGAAA.................... 21 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TACGTAACAGGCGATAAGACG...................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TAACAGGCGATAAGACGGTCA.................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................GATACAAAAAGCTATAGCTATGAGGCT........................................................................................................................................................................................................ 27 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................TCTTACATCAGAGCAGAGAAC................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTTTGGTTGATATCATGGTTA............................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GCATACCGTGAAAGTGGATACAAAA.......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CAGTCGTTGCATACCGTGAAG...................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CATTGCATACCGTGAAAGT.................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CAAAGAGCTATAGCTATGAGGC......................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AGGGTGGATACAAAAAGCTAT.................................................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TACGTAACAGGCGATAAGACGGTC................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ACGGAGAACTTTTGTGAAACT....................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........ATACCGTGAAAGTGGATACAAAA.......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GGACGGTCAAAATATGTGCTCA..................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATATGTGCTCAACGTTTTGGT........................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTATTCTTACATCAGAACAGA....................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................ATAAGACGGTCAAGATATGTG......................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AGCCATTGCATACCGTGAAAG..................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....CATTGCATACCGTGAAAGTGGAT................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GTCATTGCATACCGTGAAAGTGGATACAA............................................................................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................ATAGCTATGAGGCGTAAGTAG................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAGTTGACTGTCTTTTCCCCA............................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ATGTGCTCAGGGTTTTGGTTG......................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TAACAGGCGATAAGACGGCCA.................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CTATGAGGCGTAAGTAGATCA............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GTCATTGCATACCGTGAAAGTGGATACA............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTTTGGTTGATATCATGGT............................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATTGCATACCGTGAAAGTGGATACAAA........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATTGCATACCGTGAAAGTGGA................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTTTCCCCATTGCGTAACAGG................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GATACAAAAAGCTATAGCTATGA............................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AGCTATAGCTATGAGGCGTAA..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TAAAACAATGTTGATAACATA................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................AATGTGTGCTCAAGGTTTTGG............................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TCAAAATGTGTGCTCAAGGTT................................................ 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TCCCCATTACGTAACAGGCGA............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GTATGTGCTCAAGGTTTTGGT........................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATATCATGGTTATCAACGA...................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ACAGGCGATAGGACGGTCA.................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TATGAAACTAAAACAATGTTG........................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................TGTGCTCAAGGTTTTGGTTGA........................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TATGTGCTCAAGGTTTTGGTTC......................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................CGTAACAGGCGATAAGACGGT.................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GAAAGTGGATACAAAAGGCTA..................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGGTTGATATCATGGTTATCA.......................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CTTACATCAGAACAGAGAGCT.................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATTGCATACCGTGAAAGTGG.................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TATAGCCATGAGGCGTAAGTA.................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GCATACCGTGAAAGTGGAT................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................CTTACATCAGAGCAGAGAACT.................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TAACAGGCGATAGGACGGTCA.................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AGGCGATAGGACGGTCAAAAT.............................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................GAAAGTGGATACAAAAAGCT...................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AGCTATAGCTATGAGGCGTA...................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........ATACCGTGAAAGTGGATAAAA............................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TCTTACATCAGAACAGAGAAC................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................ACAGAGAACTTTTATGAAACT....................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................GACGGTCAAAATATGTGCTC...................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TGCATACCGTGAAAGTGGATACAAAA.......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TATGTGCTCAAGGTTTTGGTTG......................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TAAGTAGATCAGAATTTCATA................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGATACAAAAAGCTATAGCTATGAGGCT........................................................................................................................................................................................................ 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AACGGAGAGCTTTTATGAAACT....................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AACAGGCGATAGGACGGTC................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CTTTTATGAAACTGAAA................................................................................................................................... 17 1 14 0.64 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 3 0
..........................................................................................................................................................................................AGTGTGTGCTCAAGGTTTTGG............................................ 21 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................ATGTGCTCAAGGTTTTGGTTGT........................................ 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CATTGCATGCCGTGGGAGTGG.................................................................................................................................................................................................................................. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AACGGAGACATTTTATGAAAC........................................................................................................................................ 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................TAATACGGTCAAAATATGTGGC....................................................... 22 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................CATTAGATAATAGGCGATAAG......................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................TCGTACATCAAAACAGAGC..................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTTATGAAACTGAAACAAA............................................................................................................................... 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GTCAGTAACGTATGGCACTTTCACCTATGTTTTTCGATATCGATACTCCGCATTCATCTAGTTTTAAAGTATAATTAATAATAAGAATGTAGTCTTGTCTCTTGAAAATACTTTGATTTTGTTACAACTATTGTATTCATCAATTGACAGAAAAGGGGTAATGCATTGTCCGCTATTCTGCCAGTTTTATACACGAGTTCCAAAACCAACTATAGTACCAATAGTTGCTTTTTTAACGTTTAGTAAAAGTT
**********************************************************************............(((..((((((((((.......(((...))).....)))))).))))..)))((((.((.((...........)).)).))))..************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 SRR060667
160_females_carcasses_total
 M027
male body		 SRR060672
9x160_females_carcasses_total
 M028
head
 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060683
160_testes_total
 SRR060671
9x160_males_carcasses_total
 SRR060681
Argx9_testes_total
 SRR060664
9_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060689
160x9_testes_total
 V053
head
 SRR060658
140_ovaries_total
 SRR060670
9_testes_total
 V047
embryo
 SRR060688
160_ovaries_total
 SRR060673
9_ovaries_total
 SRR060657
140_testes_total
 GSM1528803
follicle cells		 SRR060686
Argx9_0-2h_embryos_total
 M061
embryo
 SRR060659
Argentina_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR1106729
mixed whole adult body
......................................................................................................................................................................TGTCCGCTATTCTGCCAGTTT................................................................ 21 0 1 21.00 21 2 5 1 3 2 2 0 0 0 2 1 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................GGTCCGCTATTCTGCCAGTTT................................................................ 21 1 1 3.00 3 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTTTTAACGTTTAGTAAAAGT. 21 0 1 3.00 3 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTGTCCGCTATTCTGCCAGTT................................................................. 21 0 1 3.00 3 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GACAGAAAAGGGGTAATGCAT..................................................................................... 21 0 1 2.00 2 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TGAAAATACTTTGATTTTGTT................................................................................................................................ 21 0 1 2.00 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGTACGGTATGGCGCTTTC..................................................................................................................................................................................................................................... 19 3 10 1.60 16 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 5 4 0 2 0 1 0 0 0 1 1 0 0
......................................ATCGATACTCCGCATTCATCT................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GTCAGTAACGTATGGCACT........................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTGTCCGCTGTTCTGCCAGTT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GACAGAAAAGGGGTAATGCG...................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................TTTTAAAGTATAATTAATAAT......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TTCACCTATGTTTTTCGATA.................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CGTCCGCTATTCTGCCAGTTT................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TACTCCGCATTCATCTAGTTT........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CACGAGTTCCAAAACCAACTA....................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GGGGTAATGCATTGTCCGCTA............................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGACAGGGAAGGGGTAATGCAT..................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GCTTTTTTAACGTTTAGTAGA.... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GCCAGTTTTATACACGAGTTC................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGTCTCTTGAAAATACTTTGA....................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TGTAGTCTTGTCTCTTGAAAA............................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TCAGTAACGTATGGCACTTTC..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TCCGCTATTCTGCCAGTTTTA.............................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AGGGGTAATGCATTGTCCGCT............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CCTATGTTTTTCGATATCGAT............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGTCTCTTGAAAATACTTTGG....................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TATCGATACTCCGCATTCATCT................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CGCATTCATCTAGTTTTAAAG...................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AAGAATGTAGTCTTGTCTCTT.................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TAAGAATGTAGTCTTGTCTCT..................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TCCGCATTCATCTAGTTTTAA........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TATCGATACTCCGCATTCATC................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TCAGTAACGTGTGGCACTTTC..................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AGTAGTCTTGTCTCTTGAAAGT.............................................................................................................................................. 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TCTAGTTTTAAAGTATAATTA.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GGGGTGATGCATTGTCCGCTA............................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................GTATTCATCAATTGACAGAAA.................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTTTTTAACGTTTAGTAAAAGT. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GCCAGTCGTATATACGAGTTC................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........ATGGCACTTTCACCTATGTT............................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GTCCGCTATTCTGCCAGTTT................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TAAGAATGTAGTCTTGTCTCTT.................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................ATTCATCTAGTTTTAAAGTGT................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TTCACCTATGTTTTTCGATAT................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGCATTGTCCGCTATTCTGCC..................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CTCCGCATTCGTCTAGTTTTA......................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................GACAGAAAAGGGGTCATGCAT..................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TATTCTGCCAGTTTTATACACG........................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AGTAACGTATGGCACTTTCAC................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TTTCACCTATGTTTTTCGATA.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TAGTTGCTTTTTTAACGTTTA......... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ATACACGAGTTCCAACACCA........................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTGCCAGTTTTATACACGAGT..................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TGCTTTTTTAACGTTTAG........ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAGTCTTGTCTCTTGAAAATA............................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTTTTGGCGTTTAGTAAAAGT. 21 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ACCAATAGTTGATTTCGTAAC.............. 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................ATAATAAGAATGTCGTGCTGT......................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...AGTACGGTATGGCGCTTT...................................................................................................................................................................................................................................... 18 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0
......................................................................................TTTTAGTCTTGTCTCGTGAA................................................................................................................................................. 20 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0
.........................................................CTAGTTTTAGAGTTTAATTA.............................................................................................................................................................................. 20 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................TAGTTTGAGAGTATAATTA.............................................................................................................................................................................. 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................ACTCCCAAAACCAACCATAG.................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............TGGCTCTTTCTCCTATATTT........................................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CCAGTCGTATATACGAGTTCC.................................................. 21 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TCTAGTTTGAGAGTAGAAT................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................TCTAGTTTGAGAGTTTAATT............................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13246:271253-271503 - dvi_21906 CAGTCATTGCATACCGTGAAAGTGGATACAAAAAGCTATAGCTATGAGGCGTAAGTAGATCAAAATTTCATATTAATTATTATTCTTACATCAG-AACAGAGAACTTTTAT---------------------------------------------------------------------------------------------GAAACTAAAACAATGTTGATAACATAAGTAGTTAACTGTCTTTTCCCCATTACGTAACAGGCGATAAGACGGTC--------AAAATATGTGCTCAAGGTTT-TGGTTGATATCATGGTTATCAACGA-AAAAATTGCAAATC--ATTTTCAA
droMoj3 scaffold_6500:265533-265753 - CAAGCATTGCAAAAGGCAAATGTAAATACAAGGGAATACAACTATGAGGCGTGAGTATATTAAA------------------------TATCATAAAAATATAAGTTTTATAAGAGTTAATCTAGCAAGTAGAACAATATTTAGTTTTCAACAGCTTCCCA------------------------------------------------------------------------------------------------------AGCCAAAAGCAGATTAAAACGTATTCATTTTTGTATA-TATTT-CGGTTAATATTTGTTTTAACAGCG--AAAAATTGCGAATA--ATCT----
droGri2 scaffold_15252:17015608-17015852 + CAATCATTGCAAACTGTGAATGTGGATACAACTAAATATAGCTACGAGGCGTAAGTAGA-----------------------------------------------------------------------------------------------AATACTACTATTAACACTAATTTGGTCAAAGTACTAATGTTCCATATATTGAACATCACACAAGGTTGGAA-------CATTTAATTGTCTGCCTAGAGTAAGGCTACAGCCGATAAGA--------AGTTGTTCATTTCTGTTCAAAGTTCATGTCTGATAACATGTTTAACACCGCAAAAAATAGCAACTT--ACTTATAG
droWil2 scf2_1100000004585:1875901-1875993 - AAGTGTTTGAACAGTGTCGAAGTGGACACGAGCAACTATTCGTTTGATGCGTAAGTTAT----------------------------------------------------------------------------------------------------CAATTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCA--ACTAATTCCATATACAATAT----
dp5 4_group2:166878-166934 - AAATCTTTGCGTGCAGTCGGTGTGGATACTAACAGCTATAGATACGAGACGTAAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_8:3722442-3722498 + AAATCTTTGCGTGCAGTCGGTGTGGATACTAACAGCTATAGATACGAGACGTAAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:1968341-1968398 + CAGAGTCTGAGGGACGTAGACGTGGACACCAGTGGCTACAGCTACGAGGCGTAAGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396728:622179-622233 + CAGAGCCTGAGGGACGTGGGCGTGGACACCAGTGGCTACAGCTACGAGGCGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302570:1005552-1005607 - CAGAGCCTGAAGAGCGTAAATGTGGACACCAGTGGCTACTCCTACGAGAAGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453904:1439758-1439816 - CAGACCCTACGGGAAGTGAATGTGGACACCAGTAACTACACACACGAGAAGTAAGAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490216:58833-58887 - CAAGCCCTGCGCGGCGTCAATGTCGACACCAACAACTATTCCAAAGAGATGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779252:149677-149731 - CAGACTCTGAGTGTCGTGAATGTGGACACCAGCAACTATACATACGAGATGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301547:133454-133480 + CAGACTCTGCGGAGCGTTAATGTGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000413017:419075-419129 + CAGACCTTGCGAGGCGTTGATGTGGACACCAGCAGCTATACACTCGAGATGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409154:130572-130643 - CAGACCTTGCGTGGCGTGAATATAGACACGAGCAACTATACATACGAGATGTACGACGG-----------------------------------------------------------------------------------------------GTTCTCGAAATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2L:141391-141445 - CAGACCTTGCGCAGCGTGAATGTGGACACCAGCAACTACACATACGAATTGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2l:127116-127170 - CAGACCTTGCGCAGCGTGAATGTGGACACCAGCAACTACACATACGAATTGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_14:140154-140208 - CAGACCTTGCGCAGCGTGAATGTGGACACCAGCAACTACACATACGAATTGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2L:130496-130554 - CAGACCTTGCGCAGCGTGAACGTGGACACCAGCAACTACTCATACGAATTGTAAGAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4929:182371-182425 - CAGACCTTGCACAGCGTGAATGTGGACACCAGCAACTACACATACGAATTGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAGTCATTGCATACCGTGAAAGTGGATACAAAAAGCTATAGCTATGAGGCGTAAGTAGATCAAAATTTCATATTAATTATTATTCTTACATCAG-AACAGAGAACTTTTAT---------------------------------------------------------------------------------------------GAAACTAAAACAATGTTGATAACATAAGTAGTTAACTGTCTTTTCCCCATTACGTAACAGGCGATAAGACGGTC--------AAAATATGTGCTCAAGGTTT-TGGTTGATATCATGGTTATCAACGA-AAAAATTGCAAATC--ATTTTCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................CTTACATCAG-AACAGAGAACT...........................................................................................................................................................................................................................................................21110.0010001000000000001011010000000000000000000000000000000000000001040
...................................................................................................................................................................................................................................................................................................ATGTGCTCAAGGTTT-TGGTTG............................................2119.009120000000000000001000001000000000000000000000000000000000000130
CAGTCATTGCATACCGTGAAA................................................................................................................................................................................................................................................................................................................................................2113.003000000000000000002000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................ATATGTGCTCAAGGTTT-TGGT..............................................2113.003000000000000000000000000000010000000000000000000000000000000020
..........................................TATGAGGCGTAAGTAGATCAA......................................................................................................................................................................................................................................................................................................2113.003000000000000001011000000000000000000000000000000000000000000000
..........................................TATGAGGCGTAAGTAGATCA.......................................................................................................................................................................................................................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000030
..................................................................................................................................................................................................................................................................................................TATGTGCTCAAGGTTT-TGGTT.............................................2112.002000000000000000002000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ATATCATGGTTATCAACGA-AA......................2112.002000000000000001001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TACGTAACAGGCGATAAGACG..................................................................................2112.002000000000000000000000000000000000000000000000000000000000000020
..................................................................................................................................................................................................................................................................TAACAGGCGATAAGACGGTC--------A......................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
........................GATACAAAAAGCTATAGCTATGAGGCT..................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTT-TGGTTGATATCATGGTTA................................2111.001001000000000000000000000000000000000000000000000000000000000000
........GCATACCGTGAAAGTGGATACAAAA....................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....CATTGCATACCGTGAAAGT..............................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TACGTAACAGGCGATAAGACGGTC--------.......................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
..........ATACCGTGAAAGTGGATACAAAA....................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................TTATTCTTACATCAG-AACAGA................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
....CATTGCATACCGTGAAAGTGGAT..........................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..GTCATTGCATACCGTGAAAGTGGATACAA......................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000010
.....................................ATAGCTATGAGGCGTAAGTAG...........................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.........................................CTATGAGGCGTAAGTAGATCA.......................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..GTCATTGCATACCGTGAAAGTGGATACA.......................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTT-TGGTTGATATCATGGT..................................1911.001000000000000000001000000000000000000000000000000000000000000000
.....ATTGCATACCGTGAAAGTGGATACAAA.....................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....ATTGCATACCGTGAAAGTGGA...........................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
........................GATACAAAAAGCTATAGCTATGA......................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.................................AGCTATAGCTATGAGGCGTAA...............................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................TAAAACAATGTTGATAACATA...............................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TCCCCATTACGTAACAGGCGA.........................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................ATATCATGGTTATCAACGA-........................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................TAT---------------------------------------------------------------------------------------------GAAACTAAAACAATGTTG.......................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TGTGCTCAAGGTTT-TGGTTGA...........................................2111.001000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TATGTGCTCAAGGTTT-TGGTTC............................................2211.001000000000000000010000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CGTAACAGGCGATAAGACGGT................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................TGGTTGATATCATGGTTATCA.............................2111.001001000000000000000000000000000000000000000000000000000000000000
.....ATTGCATACCGTGAAAGTGG............................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
........GCATACCGTGAAAGTGGAT..........................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................GAAAGTGGATACAAAAAGCT................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.................................AGCTATAGCTATGAGGCGTA................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................TCTTACATCAG-AACAGAGAAC............................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................ACAGAGAACTTTTAT---------------------------------------------------------------------------------------------GAAACT...................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GACGGTC--------AAAATATGTGCTC..........................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......TGCATACCGTGAAAGTGGATACAAAA....................................................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TATGTGCTCAAGGTTT-TGGTTG............................................2211.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................ATGTGCTCAAGGTTT-TGGTTGT...........................................2220.501000000000000000000000000000000000000000000000000000000000000010
droMoj3
CAAGCATTGCAAAAGGCAAATGTAAATACAAGGGAATACAACTATGAGGCGTGAGTATATTAAA------------------------TATCATAAAAATATAAGTTTTATAAGAGTTAATCTAGCAAGTAGAACAATATTTAGTTTTCAACAGCTTCCCA------------------------------------------------------------------------------------------------------AGCCAAAAGCAGATTAAAACGTATTCATTTTTGTATA-TATTT-CGGTTAATATTTGTTTTAACAGCG--AAAAATTGCGAATA--ATCT----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..AGCATTGCAAAAGGCAAAT................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................GTAAATACAAGGGAATACAACTATGA......................................................................................................................................................................................................................................................................................................................2611.001000001
..................AATGTAAATACAAGGGAATAC..............................................................................................................................................................................................................................................................................................................................2111.001000001
......................................................................................................AAGTTTTATAAGAGTTAATCT..........................................................................................................................................................................................................................................2111.001100000
droGri2
CAATCATTGCAAACTGTGAATGTGGATACAACTAAATATAGCTACGAGGCGTAAGTAGA-----------------------------------------------------------------------------------------------AATACTACTATTAACACTAATTTGGTCAAAGTACTAATGTTCCATATATTGAACATCACACAAGGTTGGAA-------CATTTAATTGTCTGCCTAGAGTAAGGCTACAGCCGATAAGA--------AGTTGTTCATTTCTGTTCAAAGTTCATGTCTGATAACATGTTTAACACCGCAAAAAATAGCAACTT--ACTTATAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAGTGTTTGAACAGTGTCGAAGTGGACACGAGCAACTATTCGTTTGATGCGTAAGTTAT----------------------------------------------------------------------------------------------------CAATTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------AGACCA--ACTAATTCCATATACAATAT----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....GTTTGAACAGTGTCGAAGT..............................................................................................................................................................................................................................................................................................................................................1912.00200200
....GTTTGAACAGTGTCGAAGTGGAC..........................................................................................................................................................................................................................................................................................................................................2311.00100100
....GTTTGAACAGTGTCGAAGTGGA...........................................................................................................................................................................................................................................................................................................................................2211.00100100
...................AAGTGGACACGAGCAACTATTCGTTT........................................................................................................................................................................................................................................................................................................................2611.00100100
.................CGAAGTGGACACGAGCAACTATTCGTTT........................................................................................................................................................................................................................................................................................................................2811.00100100
.....TTTGAACAGTGTCGAAGTGGA...........................................................................................................................................................................................................................................................................................................................................2111.00100100
..GTGTTTGAACAGTGTCGAAGT..............................................................................................................................................................................................................................................................................................................................................2111.00100100
........GAACAGTGTCGAAGTGGAC..........................................................................................................................................................................................................................................................................................................................................1911.00110000
.................CGAAGTGGACACGAGCAACT................................................................................................................................................................................................................................................................................................................................2011.00100100
........GAACAGTGTCGAAGTGAC...........................................................................................................................................................................................................................................................................................................................................1830.33100100
dp5
AAATCTTTGCGTGCAGTCGGTGTGGATACTAACAGCTATAGATACGAGACGTAAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
AAATCTTTGCGTGCAGTCGGT................................................................................................................................................................................................................................................................................................................................................2112.0020110000000
..ATCTTTGCGTGCAGTCGGT................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........GTGCAGTCGGTGTGGATACTAACAGCT................................................................................................................................................................................................................................................................................................................................2711.0010000001000
............GCAGTCGGTGTGGATACTAAC....................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....TTTGCGTGCAGTCGGTGTGG............................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................GGTGTGGATACTAACAGCTATAGATAC........................................................................................................................................................................................................................................................................................................................2711.0010100000000
.AATCTTTGCGTGCAGTCGGTGT..............................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...................GTGTGGATACTAACAGCT................................................................................................................................................................................................................................................................................................................................1811.0010100000000
droPer2
AAATCTTTGCGTGCAGTCGGTGTGGATACTAACAGCTATAGATACGAGACGTAAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
AAATCTTTGCGTGCAGTCGGTG...............................................................................................................................................................................................................................................................................................................................................2213.003300000
............GCAGTCGGTGTGGATACTAAC....................................................................................................................................................................................................................................................................................................................................2113.003300000
.......TGCGTGCAGTCGGTGTGGATACT.......................................................................................................................................................................................................................................................................................................................................2312.002200000
.AATCTTTGCGTGCAGTCGGT................................................................................................................................................................................................................................................................................................................................................2012.002200000
........GCGTGCAGTCGGTGTGGATACTAACAGCT................................................................................................................................................................................................................................................................................................................................2912.002200000
..ATCTTTGCGTGCAGTCGGT................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........GTGCAGTCGGTGTGGATACTAACA...................................................................................................................................................................................................................................................................................................................................2411.001100000
............GCAGTCGGTGTGGATACTAACAGCT................................................................................................................................................................................................................................................................................................................................2511.001100000
..........GTGCAGTCGGTGTGGATACTAAC....................................................................................................................................................................................................................................................................................................................................2311.001100000
....CTTTGCGTGCAGTCGGTGTGGATACTAAC....................................................................................................................................................................................................................................................................................................................................2911.001100000
droAna3
CAGAGTCTGAGGGACGTAGACGTGGACACCAGTGGCTACAGCTACGAGGCGTAAGAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............GACGTAGACGTGGACACCAGT....................................................................................................................................................................................................................................................................................................................................21112.0012910011
........GAGGGACGTAGACGTGGACACCAGT....................................................................................................................................................................................................................................................................................................................................2519.009600021
...............GTAGACGTGGACACCAGT....................................................................................................................................................................................................................................................................................................................................1814.004100003
.............ACGTAGACGTGGACACCAGT....................................................................................................................................................................................................................................................................................................................................2013.003100011
...........GGACGTAGACGTGGACACCAGT....................................................................................................................................................................................................................................................................................................................................2213.003300000
..............CGTAGACGTGGACACCAGT....................................................................................................................................................................................................................................................................................................................................1913.003300000
..........GGGACGTAGACGTGGACACCAGT....................................................................................................................................................................................................................................................................................................................................2312.002200000
..............CGTAGACGTGGACACCAGTGGCTACA.............................................................................................................................................................................................................................................................................................................................2612.002200000
..........GGGACGTAGACGTGGACACCAGC....................................................................................................................................................................................................................................................................................................................................2312.002020000
..GAGTCTGAGGGACGTAGACGT..............................................................................................................................................................................................................................................................................................................................................2112.002000020
..........................CACCAGTGGCTACAGCTACGAGGC...................................................................................................................................................................................................................................................................................................................2412.002110000
........GAGGGACGTAGACGTGGA...........................................................................................................................................................................................................................................................................................................................................1812.002000020
......CTGAGGGACGTAGACGTGGA...........................................................................................................................................................................................................................................................................................................................................2012.002200000
.................................GGCTACAGCTACGAGGCG..................................................................................................................................................................................................................................................................................................................1811.001100000
......CTGAGGGACGTAGACGTGGACACCAGT....................................................................................................................................................................................................................................................................................................................................2711.001000010
..................GACGTGGACACCAGTGGCTACAG............................................................................................................................................................................................................................................................................................................................2311.001100000
............GACGTAGACGTGGACACCAGTG...................................................................................................................................................................................................................................................................................................................................2211.001100000
...............GTAGACGTGGACACCAGTGGA.................................................................................................................................................................................................................................................................................................................................2111.001000001
.AGAGTCTGAGGGACGTAGACGTGGA...........................................................................................................................................................................................................................................................................................................................................2511.001100000
..................GACGTGGACACCAGTGGCTACAGC...........................................................................................................................................................................................................................................................................................................................2411.001000010
...............GTAGACGTGGACACCAGTGG..................................................................................................................................................................................................................................................................................................................................2011.001001000
...............GTAGACGTGGACACCAGTG...................................................................................................................................................................................................................................................................................................................................1911.001000010
.....TCTGAGGGACGTAGACGTGGACACCA......................................................................................................................................................................................................................................................................................................................................2611.001100000
........GAGGGACGTAGACGTGGACACC.......................................................................................................................................................................................................................................................................................................................................2211.001100000
...............GTAGACGTGGACACCAGTGGCTA...............................................................................................................................................................................................................................................................................................................................2311.001100000
..............CGTAGACGTGGACACCAGTGG..................................................................................................................................................................................................................................................................................................................................2111.001100000
...............GTAGACGTGGACACCAGTGGC.................................................................................................................................................................................................................................................................................................................................2111.001000001
...AGTCTGAGGGACGTAGACGTGGAC..........................................................................................................................................................................................................................................................................................................................................2411.001100000
....GTCTGAGGGACGTAGACGT..............................................................................................................................................................................................................................................................................................................................................1911.001010000
.......TGAGGGACGTAGACGTGGACACC.......................................................................................................................................................................................................................................................................................................................................2311.001010000
CAGAGTCTGAGGGACGTAGACGT..............................................................................................................................................................................................................................................................................................................................................2311.001000010
.......................GGACACCAGTGGCTACAGC...........................................................................................................................................................................................................................................................................................................................1911.001100000
.......................GGACACCAGTGGCTACAGCT..........................................................................................................................................................................................................................................................................................................................2011.001100000
....GTCTGAGGGACGTAGACGTGGA...........................................................................................................................................................................................................................................................................................................................................2211.001100000
......CTGAGGGACGTAGACGTGGACAC........................................................................................................................................................................................................................................................................................................................................2311.001000010
....GTCTGAGGGACGTAGACG...............................................................................................................................................................................................................................................................................................................................................1811.001100000
............GACGTAGACGTGGACACCAGTGGA.................................................................................................................................................................................................................................................................................................................................2411.001100000
droBip1
CAGAGCCTGAGGGACGTGGGCGTGGACACCAGTGGCTACAGCTACGAGGCGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAGAGCCTGAAGAGCGTAAATGTGGACACCAGTGGCTACTCCTACGAGAAGTAAGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAGACCCTACGGGAAGTGAATGTGGACACCAGTAACTACACACACGAGAAGTAAGAAGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CAAGCCCTGCGCGGCGTCAATGTCGACACCAACAACTATTCCAAAGAGATGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CAGACTCTGAGTGTCGTGAATGTGGACACCAGCAACTATACATACGAGATGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGACTCTGCGGAGCGTTAATGTGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAGACCTTGCGAGGCGTTGATGTGGACACCAGCAGCTATACACTCGAGATGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAGACCTTGCGTGGCGTGAATATAGACACGAGCAACTATACATACGAGATGTACGACGG-----------------------------------------------------------------------------------------------GTTCTCGAAATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CAGACCTTGCGCAGCGTGAATGTGGACACCAGCAACTACACATACGAATTGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........GCGCAGCGTGAATGTGGACACCAGCA...................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACCTTGCGCAGCGTGAATGTGGA...........................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000
...................ATGTGGACACCAGCAACT................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CGCAGCGTGAATGTGGACACC.......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................CAGCAACTACACATACGA......................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CTTGCGCAGCGTGAATGTGGACAC........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CAGACCTTGCGCAGCGTGAATGTG.............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
CAGACCTTGCGCAGCGTGAATGT..............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGACCTTGCGCAGCGTGAATGTGGA...........................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....CTTGCGCAGCGTGAATGTGG............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.AGACCTTGCGCAGCGTGAATGT..............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....CTTGCGCAGCGTGAATGTG.............................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........CGCAGCGTGAATGTGGACACA.......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........CAGCGTGAATGTGGACACCAGCAACTACA.............................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGACCTTGCGCAGCGTGAATGTGG............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGTGGACACCAGCAACTACA.............................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GTGAATGTGGACACCAGCAACTACA.............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGACCTTGCGCAGCGTGAATGTG.............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TTGCGCAGCGTGAATGTGGACACC.......................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............AGCGTGAATGTGGACACCAGCAACTAC..............................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGCAACTACACATACGAATT...................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACCTTGCGCAGCGTGAATGTGGACAC........................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CTTGCGCAGCGTGAATGTGGACACC.......................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
droSim2
CAGACCTTGCGCAGCGTGAATGTGGACACCAGCAACTACACATACGAATTGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................ATGTGGACACCAGCAACTAC..............................................................................................................................................................................................................................................................................................................................2013.00301200000000000000
.....................GTGGACACCAGCAACTACAC............................................................................................................................................................................................................................................................................................................................2012.00200020000000000000
...................ATGTGGACACCAGCAACT................................................................................................................................................................................................................................................................................................................................1812.00201100000000000000
.....................GTGGACACCAGCAACTACACATACGA......................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.................................AACTACACATACGAATTGTT................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.................................AACTACACATACGAATTGT.................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
...................ATGTGGACACCAGCAACTACA.............................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.....................GTGGACACCAGCAACTACA.............................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.........CGCAGCGTGAATGTGGACACCAGCAACT................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
.......................GGACACCAGCAACTACACATACGAATT...................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
..............................AGCAACTACACATACGAATTGTTT...............................................................................................................................................................................................................................................................................................................2411.00100010000000000000
............AGCGTGAATGTGGACACCAGC....................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
...................ATGTGGACACCAGCAACTACAC............................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..........GCAGCGTGAATGTGGACACCAGCA...................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.....................GTGGACACCAGCAACTACACATA.........................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.................GAATGTGGACACCAGCAACTACAC............................................................................................................................................................................................................................................................................................................................2411.00100001000000000000
droSec2
CAGACCTTGCGCAGCGTGAATGTGGACACCAGCAACTACACATACGAATTGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........GCAGCGTGAATGTGGACACC.......................................................................................................................................................................................................................................................................................................................................2011.0010010
..GACCTTGCGCAGCGTGAATGT..............................................................................................................................................................................................................................................................................................................................................2111.0010010
.......TGCGCAGCGTGAATGTGGACACCAGC....................................................................................................................................................................................................................................................................................................................................2611.0010010
.....CTTGCGCAGCGTGAATGTG.............................................................................................................................................................................................................................................................................................................................................1911.0010010
droYak3
CAGACCTTGCGCAGCGTGAACGTGGACACCAGCAACTACTCATACGAATTGTAAGAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
CAGACCTTGCGCAGCGTGAACGTGGA...........................................................................................................................................................................................................................................................................................................................................2612.00200000020000
..GACCTTGCGCAGCGTGAACGTG.............................................................................................................................................................................................................................................................................................................................................2212.00200010010000
........GCGCAGCGTGAACGTGGA...........................................................................................................................................................................................................................................................................................................................................1812.00201100000000
.................GAACGTGGACACCAGCAACTACT.............................................................................................................................................................................................................................................................................................................................2312.00202000000000
.......TGCGCAGCGTGAACGTGGACA.........................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.............................CAGCAACTACTCATACGA......................................................................................................................................................................................................................................................................................................................1811.00101000000000
...ACCTTGCGCAGCGTGAACGTGGACACC.......................................................................................................................................................................................................................................................................................................................................2711.00100100000000
CAGACCTTGCGCAGCGTGAACGTGGAC..........................................................................................................................................................................................................................................................................................................................................2711.00100000010000
............AGCGTGAACGTGGACACCAGC....................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...ACCTTGCGCAGCGTGAACGTGG............................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....CCTTGCGCAGCGTGAACGTGGAC..........................................................................................................................................................................................................................................................................................................................................2311.00100000010000
......TTGCGCAGCGTGAACGTGGA...........................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.......................GGACACCAGCAACTACTCATACGAATT...................................................................................................................................................................................................................................................................................................................2711.00110000000000
.............GCGTGAACGTGGACACCAGC....................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..........GCAGCGTGAACGTGGACACCAG.....................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.................................AACTACTCATACGAATTGTTT...............................................................................................................................................................................................................................................................................................................2111.00100000100000
........GCGCAGCGTGAACGTGGACACCAGC....................................................................................................................................................................................................................................................................................................................................2511.00100000010000
droEre2
CAGACCTTGCACAGCGTGAATGTGGACACCAGCAACTACACATACGAATTGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
CAGACCTTGCACAGCGTGAATGTGGA...........................................................................................................................................................................................................................................................................................................................................2612.0020000020
.......TGCACAGCGTGAATGTGGACACCAGC....................................................................................................................................................................................................................................................................................................................................2612.0020000200
CAGACCTTGCACAGCGTGAAT................................................................................................................................................................................................................................................................................................................................................2112.0020010010
....CCTTGCACAGCGTGAATGT..............................................................................................................................................................................................................................................................................................................................................1911.0010000010
..GACCTTGCACAGCGTGAATGTGGA...........................................................................................................................................................................................................................................................................................................................................2411.0010000100
............AGCGTGAATGTGGACACCAGC....................................................................................................................................................................................................................................................................................................................................2121.0020000110
.AGACCTTGCACAGCGTGAAT................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..GACCTTGCACAGCGTGAATGTGGACACC.......................................................................................................................................................................................................................................................................................................................................2811.0010000100
........GCACAGCGTGAATGTGGACACCAGC....................................................................................................................................................................................................................................................................................................................................2511.0010000010
..GACCTTGCACAGCGTGAATGTG.............................................................................................................................................................................................................................................................................................................................................2211.0011000000
..GACCTTGCACAGCGTGAATGT..............................................................................................................................................................................................................................................................................................................................................2111.0010000010
...............GTGAATGTGGACACCAGC....................................................................................................................................................................................................................................................................................................................................1820.5010000010
.............GCGTGAATGTGGACACCAGCAA..................................................................................................................................................................................................................................................................................................................................2220.5010000100
............AGCGTGAATGTGGACACCA......................................................................................................................................................................................................................................................................................................................................1920.5010000100
..........................CACCAGCAACTACACATACGAATT...................................................................................................................................................................................................................................................................................................................2420.5010100000
.............................CAGCAACTACACATACGAAT....................................................................................................................................................................................................................................................................................................................2020.5010100000
...............GTGAATGTGGACACCAGCAACT................................................................................................................................................................................................................................................................................................................................2220.5010000010
...............GTGAATGTGGACACCAGCA...................................................................................................................................................................................................................................................................................................................................1920.5010010000
.....................GTGGACACCAGCAACTACA.............................................................................................................................................................................................................................................................................................................................1920.5010000100
.................GAATGTGGACACCAGCAACTACAC............................................................................................................................................................................................................................................................................................................................2420.5010000100

Generated: 05/16/2015 at 11:36 PM