ID:

dvi_21879

 Coordinate:

scaffold_13052:764438-764588 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.4 -9.1

Flybase annnotation

exon [dvir_GLEANR_68:2]; CDS [Dvir\GJ21440-cds]; intron [Dvir\GJ21440-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron-
mature
  1. scaffold_12728:618188-618209 -
  2. dvi_21879  scaffold_13052:764539-764560 -
  3. scaffold_13052:808680-808701 -
  4. scaffold_13324:2288039-2288060 -
star
  1. scaffold_6:453-472 +
  2. scaffold_12723:2455330-2455349 +
  3. scaffold_12758:944224-944243 +
  4. scaffold_12815:263652-263671 +
  5. scaffold_12855:8842563-8842582 +
  6. scaffold_12891:236688-236707 +
  7. scaffold_12891:266390-266409 +
  8. scaffold_12936:548631-548650 +
  9. scaffold_12954:302291-302310 +
  10. scaffold_12954:306090-306109 +
  11. scaffold_12958:728572-728591 +
  12. scaffold_12958:2024971-2024990 +
  13. scaffold_12958:2295179-2295198 +
  14. scaffold_12958:3051125-3051144 +
  15. scaffold_12969:34818-34837 +
  16. scaffold_12985:327-346 +
  17. scaffold_13045:691795-691814 +
  18. scaffold_13047:16711718-16711737 +
  19. scaffold_13049:24525133-24525152 +
  20. scaffold_13050:3354055-3354074 +
  21. scaffold_45:513-532 -
  22. scaffold_9399:745-764 -
  23. scaffold_11753:2690-2709 -
  24. scaffold_11955:650-669 -
  25. scaffold_12240:1471-1490 -
  26. scaffold_12806:35758-35777 -
  27. scaffold_12815:309988-310007 -
  28. scaffold_12837:80493-80512 -
  29. scaffold_12929:157346-157365 -
  30. scaffold_12947:19651-19670 -
  31. scaffold_12947:103255-103274 -
  32. scaffold_12958:2752337-2752356 -
  33. scaffold_12958:2872380-2872399 -
  34. scaffold_12966:48105-48124 -
  35. scaffold_12967:312959-312978 -
  36. scaffold_12970:282714-282733 -
  37. scaffold_13045:1909377-1909396 -
  38. scaffold_13274:29574-29593 -
  39. scaffold_13324:896686-896705 -
  40. scaffold_13324:1731164-1731183 -
  41. scaffold_41:1336-1355 -
  42. scaffold_9582:8369-8388 -
  43. scaffold_9714:3641-3660 -
  44. scaffold_9774:1120-1139 -
  45. scaffold_10020:2441-2460 -
  46. scaffold_11896:3417-3436 -
  47. scaffold_12782:102467-102486 -
  48. scaffold_12815:227691-227710 -
  49. scaffold_12815:494627-494646 -
  50. scaffold_12837:78058-78077 -
  51. scaffold_12843:42140-42159 -
  52. scaffold_12872:638-657 -
  53. scaffold_12945:28976-28995 -
  54. scaffold_12960:124800-124819 -
  55. scaffold_13045:704226-704245 -
  56. scaffold_13052:679789-679808 -
  57. scaffold_13317:150892-150911 -
  58. scaffold_13324:2234826-2234845 -
  59. scaffold_13534:4535-4554 -
  60. scaffold_13534:16967-16986 -
  61. scaffold_85:669-688 +
  62. scaffold_7156:4827-4846 +
  63. scaffold_9323:2975-2994 +
  64. scaffold_9394:5724-5743 +
  65. scaffold_9644:689-708 +
  66. scaffold_12735:223874-223893 +
  67. scaffold_12776:8571-8590 +
  68. scaffold_12914:40207-40226 +
  69. scaffold_12928:7171423-7171442 +
  70. scaffold_12929:147544-147563 +
  71. scaffold_12929:152478-152497 +
  72. scaffold_12937:247700-247719 +
  73. scaffold_12937:254433-254452 +
  74. scaffold_12958:249524-249543 +
  75. scaffold_12963:9975523-9975542 +
  76. scaffold_12970:603444-603463 +
  77. scaffold_12970:684518-684537 +
  78. scaffold_13045:1438001-1438020 +
  79. scaffold_13324:1079825-1079844 +
  80. scaffold_13324:1261502-1261521 +
  81. scaffold_9987:2977-2996 +
  82. scaffold_10322:230031-230050 +
  83. scaffold_10408:2977-2996 +
  84. scaffold_10431:65-84 +
  85. scaffold_10431:3593-3612 +
  86. scaffold_12182:805-824 +
  87. scaffold_12777:19603-19622 +
  88. scaffold_12891:115640-115659 +
  89. scaffold_12925:53486-53505 +
  90. scaffold_12929:524104-524123 +
  91. scaffold_12967:90629-90648 +
  92. scaffold_12970:9578409-9578428 +
  93. scaffold_13045:71322-71341 +
  94. scaffold_13046:12727-12746 +
  95. scaffold_13047:7772261-7772280 +
  96. scaffold_13052:1080287-1080306 +
  97. scaffold_13052:1244123-1244142 +
  98. scaffold_13293:2900-2919 +
  99. scaffold_13324:429695-429714 +
  100. scaffold_13324:1325844-1325863 +
  101. scaffold_51:1186-1205 +
  102. scaffold_10230:5916-5935 +
  103. scaffold_10230:35515-35534 +
  104. scaffold_10230:36775-36794 +
  105. scaffold_10230:104579-104598 +
  106. scaffold_10230:106151-106170 +
  107. scaffold_10230:107724-107743 +
  108. scaffold_10398:5874-5893 +
  109. scaffold_11917:2196-2215 +
  110. scaffold_11917:3316-3335 +
  111. scaffold_11917:4440-4459 +
  112. scaffold_12776:9997-10016 +
  113. scaffold_12958:320574-320593 +
  114. scaffold_12958:3412108-3412127 +
  115. scaffold_13045:23045-23064 +
  116. scaffold_13045:147689-147708 +
  117. scaffold_13045:2125276-2125295 +
  118. scaffold_13324:1811564-1811583 +
  119. scaffold_13485:378-397 +
  120. scaffold_13534:236-255 +
  121. scaffold_77:759-778 +
  122. scaffold_81:26-45 +
  123. scaffold_9935:3046-3065 +
  124. scaffold_12723:184007-184026 +
  125. scaffold_12799:9685-9704 +
  126. scaffold_12815:272501-272520 +
  127. scaffold_12815:274180-274199 +
  128. scaffold_12815:297829-297848 +
  129. scaffold_12815:422530-422549 +
  130. scaffold_12875:2963098-2963117 +
  131. scaffold_12891:374908-374927 +
  132. scaffold_12925:86769-86788 +
  133. scaffold_12958:319801-319820 +
  134. scaffold_12958:2353318-2353337 +
  135. scaffold_12966:80381-80400 +
  136. scaffold_13049:25061470-25061489 +
  137. scaffold_13049:25065875-25065894 +
  138. scaffold_13049:25073080-25073099 +
  139. scaffold_13049:25227133-25227152 +
  140. scaffold_13246:713558-713577 +
  141. scaffold_12094:598-617 -
  142. scaffold_12736:8584-8603 -
  143. scaffold_12854:1370-1389 -
  144. scaffold_12854:36960-36979 -
  145. scaffold_12855:10121355-10121374 -
  146. scaffold_12941:197548-197567 -
  147. scaffold_13036:825691-825710 -
  148. scaffold_13036:827557-827576 -
  149. scaffold_13045:49192-49211 -
  150. scaffold_13045:54284-54303 -
  151. scaffold_13045:174427-174446 -
  152. scaffold_13049:24943372-24943391 -
  153. dvi_21879  scaffold_13052:764567-764586 -
  154. scaffold_13324:1044425-1044444 -
  155. scaffold_13324:1132403-1132422 -
  156. scaffold_13534:9791-9810 -
  157. scaffold_12776:10815-10834 +
  158. scaffold_12776:40962-40981 +
  159. scaffold_10230:102381-102400 +
  160. scaffold_12815:267433-267452 +
  161. scaffold_12815:269797-269816 +
  162. scaffold_12891:37371-37390 +
  163. scaffold_12945:71610-71629 +
  164. scaffold_12971:4921-4940 +
  165. scaffold_13049:24525816-24525835 +
  166. scaffold_13049:24613538-24613557 +
  167. scaffold_13269:5168-5187 +
  168. scaffold_13354:48416-48435 +
  169. scaffold_10120:513-532 +
  170. scaffold_10340:816-835 +
  171. scaffold_12575:5701-5720 +
  172. scaffold_12891:186417-186436 +
  173. scaffold_13045:1853441-1853460 +
  174. scaffold_7613:92-111 -
  175. scaffold_7613:674-693 -
  176. scaffold_7613:1858-1877 -
  177. scaffold_7614:1371-1390 -
  178. scaffold_12105:2379-2398 -
  179. scaffold_12514:60533-60552 -
  180. scaffold_12514:77146-77165 -
  181. scaffold_12790:84907-84926 -
  182. scaffold_12815:92425-92444 -
  183. scaffold_12855:9132455-9132474 -
  184. scaffold_12855:9387088-9387107 -
  185. scaffold_12929:348716-348735 -
  186. scaffold_12929:351063-351082 -
  187. scaffold_12932:354549-354568 -
  188. scaffold_12958:1779847-1779866 -
  189. scaffold_12958:2691013-2691032 -
  190. scaffold_13049:23425607-23425626 -
  191. scaffold_13049:25045932-25045951 -
  192. scaffold_13050:434972-434991 -
  193. scaffold_13052:685971-685990 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CATTTACTATTTTCCCGGTACTTCTTAGATAGGGGCAAAGCACTATGAGCATTATGAAAAGGTTGGGTCTGCAAGGGTATTAGATCTTGGGCGTGCCGAAGATAGCCCTTCTTTCTCGTTTTCATTTTGTTGTGGTTTTTCAGATTAATTTACATATATAATATACTGAGCTTTTTTTTTCATTTTGTTGTGATTTTTCAGATTCTAAAAATGAACCGACAAATATGCAAAAATCCAAATCGTTATCTAAT
****************************************************..........((.(((.(((..(((........)))..))).))).))******************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060674
9x140_ovaries_total
 M047
female body
 SRR060679
140x9_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060670
9_testes_total
 SRR060658
140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 V116
male body		 M027
male body		 SRR060669
160x9_females_carcasses_total
 SRR060655
9x160_testes_total
 SRR060657
140_testes_total
 SRR060673
9_ovaries_total
................................................GCATTATGAAAAGGTTGGGTCTGC................................................................................................................................................................................... 24 0 20 1.25 25 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TGAGCATTATGAAAAGGTTGGGTC...................................................................................................................................................................................... 24 0 20 0.35 7 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TGAGCATTATGAAAAGGTTGGGTCT..................................................................................................................................................................................... 25 0 20 0.30 6 0 0 0 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................ATTAGATCTTGGGCGTGCCGAA....................................................................................................................................................... 22 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................AGCATTATGAAAAGGTTGGGTCTGC................................................................................................................................................................................... 25 0 20 0.20 4 0 0 0 0 0 1 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGCAAGGGTATTAGATCTTGGGCGTGC........................................................................................................................................................... 27 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TCTGCAAGGGTATTAGATCTTG.................................................................................................................................................................. 22 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGCAAGGGTATTAGATCTTGGGC............................................................................................................................................................... 23 0 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TATGAAAAGGTTGGGTCTGC................................................................................................................................................................................... 20 0 20 0.15 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TCTTAGATAGGGGCAAAGCACTAT............................................................................................................................................................................................................. 24 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAAAAGGTTGGGTCTGC................................................................................................................................................................................... 18 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................GCATTATGAAAAGGTTGG......................................................................................................................................................................................... 18 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..TTTACTATTTTCCCGGTACTTCTTAGA.............................................................................................................................................................................................................................. 27 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGCAAGGGTATTAGATCTTGGGCC.............................................................................................................................................................. 24 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................ATAGATAATATACGGATCTT.............................................................................. 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................GGCAAAGCACTATGAGCA........................................................................................................................................................................................................ 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............TCCCGGTACTTCTTAGATAGGGGCA...................................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................ATGAGCATTATGAAAAGGTTGGG........................................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................TAGGGGCAAAGCACTATGA........................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................CTTAGATAGGGGCAAAGCACTATG............................................................................................................................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................TTCTTAGATAGGGGCAAAGCACTATGA........................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........TTTTCCCGGTACTTCTTAGATAGG.......................................................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.ATTTACTATTTTCCCGGTACTTCTTAGA.............................................................................................................................................................................................................................. 28 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TAGATAGGGGCAAAGCACTATGAGCAT....................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GTTGGGTCTGCAAGGGTATTAGATC..................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TGGGTCTGCAAGGGTATTAGA....................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................ATAGGGGCAAAGCACTATGAG.......................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................TGGGTCTGCAAGGGTATTAGATCTT................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TTATGAAAAGGTTGGGTCTG.................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................GCACTATGAGCATTATGAAAAGGTTGGG........................................................................................................................................................................................ 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................TGAAAAGGTTGGGTCTGCAA................................................................................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................ATTATGAAAAGGTTGGGTCTGC................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................TACTTCTTAGATAGGGGCAAAGCAC................................................................................................................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................TATGAAAAGGTTGGGTCT..................................................................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................ATTATGAAAAGGTTGGGTCTGCA.................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................AGCACTATGAGCATTATGAAAAGGT............................................................................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TCTTAGATAGGGTCAAAGCACTATGAGC......................................................................................................................................................................................................... 28 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CATTATGAAAAGGTTGGGTCTGCA.................................................................................................................................................................................. 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGAAAAGGTTGGGTCTGCAAGGGTA............................................................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................AAAGGTTGGGTCTGCAAGGGTATT.......................................................................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TATGAGCATTATGAAAAGGTTGGG........................................................................................................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................TTGGGTCTGCAAGGGTATTAGATC..................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................TGAGCATTATGAATAGGTTGG......................................................................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..TTTACTATTTTCCCGGTACTTGTTAGA.............................................................................................................................................................................................................................. 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GTAAATGATAAAAGGGCCATGAAGAATCTATCCCCGTTTCGTGATACTCGTAATACTTTTCCAACCCAGACGTTCCCATAATCTAGAACCCGCACGGCTTCTATCGGGAAGAAAGAGCAAAAGTAAAACAACACCAAAAAGTCTAATTAAATGTATATATTATATGACTCGAAAAAAAAAGTAAAACAACACTAAAAAGTCTAAGATTTTTACTTGGCTGTTTATACGTTTTTAGGTTTAGCAATAGATTA
*******************************************************************************************************************************************************..........((.(((.(((..(((........)))..))).))).))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060677
Argx9_ovaries_total
 M047
female body
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060670
9_testes_total
 SRR060678
9x140_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060655
9x160_testes_total
 V053
head
 SRR060673
9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060683
160_testes_total
 SRR060654
160x9_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR1106729
mixed whole adult body
.............................................................................................................AGAAAGAGCAAAAGTAAAACAACACCA................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TACTTTTCCAACCCAGACGTTCCCAT............................................................................................................................................................................ 26 0 20 0.35 7 0 6 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................CCCGTTTCGTGATACTCGTAATACTT................................................................................................................................................................................................. 26 0 20 0.30 6 0 0 1 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................CCCCGTTTCGTGATACTCGTAATACTT................................................................................................................................................................................................. 27 0 20 0.25 5 0 0 0 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................GCGAAAAATAAAGTAAAACAAC............................................................. 22 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CCCGTTTCGTGATACTCGTAA...................................................................................................................................................................................................... 21 0 20 0.20 4 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................TCGTGATACTCGTAATACTTTTCCAA........................................................................................................................................................................................... 26 0 20 0.20 4 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................GTTTCGTGATACTCGTAATACTT................................................................................................................................................................................................. 23 0 20 0.15 3 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CCGTTTCGTGATACTCGTAATACTT................................................................................................................................................................................................. 25 0 20 0.15 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CGGCTTCTATCGGGAAGAAAGAGCAAAA................................................................................................................................. 28 0 20 0.15 3 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CTTCTATCGGGAAGAAAGAGCAAA.................................................................................................................................. 24 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................CGAAAGAGGAAAAGTAAAAC.......................................................................................................................... 20 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................ACTCGTAATACTTTTCCAA........................................................................................................................................................................................... 19 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..................................CGTTTCGTGATACTCGTAATACTTTT............................................................................................................................................................................................... 26 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GCTTCTATCGGGAAGAAAGAGCAAAA................................................................................................................................. 26 0 20 0.10 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AATGATAAAAGGGCCATGAAGAATCT.............................................................................................................................................................................................................................. 26 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................GGCTTCTATCGGGAAGAAAGAGCAAAA................................................................................................................................. 27 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................CGTTTCGTGATACTCGTAATACTTT................................................................................................................................................................................................ 25 0 20 0.10 2 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTCGTGATACTCGTAATACTTTTCC............................................................................................................................................................................................. 25 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................CGTAATACTTTTCCAACCCAGACG................................................................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................CGTTTCGTGATACTCGTAATACTTTTC.............................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CCGTTTCGTGATACTCGTAATACTTT................................................................................................................................................................................................ 26 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTAGAATCTATCCCCGTTTCGTGATACT........................................................................................................................................................................................................... 28 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GGGCCATGAAGAATCTAT............................................................................................................................................................................................................................ 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................TTTCGTGATACTCGTAATACTTTTCC............................................................................................................................................................................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................AAGAGCCAAAGTAATAC.......................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................CCCGTTTCGTGATACTCGTAAT..................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................CGTGATACTCGTAATACTT................................................................................................................................................................................................. 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................TTCGTGATACTCGTAATACTT................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........AAGGGCCATGAAGAATCTATCC.......................................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTTCGTGATACTCGTAATACTTTTCCAA........................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CCGCACGGCTTCTATCGGGAAGAAA......................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GCACGGCTTCTATCGGGAAGAAAGAG...................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CCCGTTTCGTGATGCTCGTAATA.................................................................................................................................................................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CCGTTTCGTGATACTCGTAA...................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TTCCAACCCAGACGTTCCCATAATCTAGA.................................................................................................................................................................... 29 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CCCGTTTCGTGATACTCGTA....................................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TCCCCGTTTCGTGATACTCGTAATACTT................................................................................................................................................................................................. 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TACTTTTCCAACCCAGACGTTCCCATA........................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.......ATAAAAGGGCCATGAAGAAT................................................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ACTTTTCCAACCCAGACGTTCCCAT............................................................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........TAAAAGGGCCATGAAGAATA............................................................................................................................................................................................................................... 20 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TCTATCGGGAAGAAAGAG...................................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................CTATCGGGAAGAAAGAGCAAAA................................................................................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................GGCTTCTATCGGGAAGAAAGAGCA.................................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CGGCTTCTATCGGGAAGAAAGAGC..................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CACGGCTTCTATCGGGAAGAAAGAGC..................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TCGTGATACTCGTAATACTTTTC.............................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ATCCCCGTTTCGTGATACTCGTAATACTT................................................................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................CGTTTCGTGATACTCGTAATA.................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GAAGAATCTATCCCCGTTTCGTGATACT........................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...AATGATAAAAGGGCCATGAAGAAT................................................................................................................................................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GTTTCGTGATACTCGTAATA.................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....CTGATAAAAGGGCCATGAAGAATCT.............................................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13052:764388-764638 - dvi_21879 CATTTACTATTTTCC--CGGTACTTCTTA-------------GATA-------------------------GGGGCAAAGC--ACTA----TGAG-CAT----------TATGAAAAGGTT-GGGTCTGCAAGGGTA----TTAG-ATCTTGGGCGTGC-CGAAGATAGCCCTTCTTTCTCGTTTTCATTTTGT--------------------------------------TGTGGTTTTT--------------------------------------------------------------------------------------------------------------C-AGATTAATTTA---CAT--ATAT-------------------------------------------------AATATACTGAGCT----------------------------------------------------------------------------------------------------------------TTT-TTTTTCATTT--TGT-TGTGATTT-----------------------------------------------------------TTCAGATT---C--TAAAAATGAAC-C---GACAAA--------------------------------------------TAT--GCAAAAATCCAAATCGTTATCTAAT
droMoj3 scaffold_6498:1444791-1444932 + TTTTGTTTT--TGCC--TT--GTCCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGTTGATAAATCTACCATTCATTGATATATCCCTAATTGATCCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--TTTTCGGTTCACTT-----------------------------------------------------------T-CAGATTCAGA--TAAAAATGAAA-C---GACAAA--------------------------------------------TAT--GCAGAAATCAAAATCTTTATCTAAT
droGri2 scaffold_15112:3689080-3689300 + TTTCACGGC------------AATT----------------TAAC--------------------------------------------------------------------------AG-CGATCTACAAGGGTA----TTTA-AGCTTCGGCGTGT-CTAAGACTG----------------------------------------------------------------------------------------------------------------GCATTCTGTAC-TTGTTT-ATG-G--CA---------------------------------------------------------------------------------------------------------------------------ACATTGTTTGTTTGTTTTTCTATTACGCAATATTCGCAT-------------GGAATG----------CTCGA--------------------------------------------------------AT--TTG-------TCAAACTTGAT----------------------------------------T-------ATTACATACTTG---TTAAGAAAAGGAAA-C---AACAAA-AATGAAA----------------------ACCAA---------AAC----CAAAACCAAAACAACTATCTACT
droWil2 scf2_1100000004953:1067207-1067464 - CCTTTTAGC--TTAA--AC--GTTTTTC--------------CA---CTTT---------GA---AGGCTATAGGTAAAGG-----AGAACT----------------TACCAA------AA-AAGTTGCAAGGGTA----TACA-AACTTTGACGCGGTCGAAGTTAGCC-CCGGCCC----------------------------------------------------------------------------------------------------------------TCTGGTTT-TT-----AGTTTATTTTGATTTTTTTTGTAATTTTCTTAATCTA-----------------------------ATATGAAA----------TTGTG--------------------------------------------------------------CCAATACTTTTTTGGCGTGAACATGTGC---CT-------ATT-----------------------------------TT-------------------------------------------------------------------------------TTAGT----------------------TT---A--TAG--AACATAAC---TGCAAA-------------------------AAAATGCTAGGAAAATGAATT---------------------TTTATTT
dp5 XR_group6:10778722-10778837 - CCCATTTTT--TTTA--TTTTCCTTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTTTTCATTC----------------------------------------------TTTT-------------------------------TTTTAT--------------------AT-----------------ATAT-------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------TTTTTAAT--TTG-------ATTTGTTTGAT----------------------------------------T----------------------T--T------------ATT--T--GTTAATTAATTTTCCTCAAATTCCTA----------------------------------------------AGA
droPer2 scaffold_3:215264-215446 + ATAAAAACT--------------------------------------------------------------------------------------------------------------CT-CGATCAGCTAGGGTA----TAAAAAGCTTTGCCGCGC-CGAAGCTGGCT-TCCTTATTTGTTTTTATTTTT------------------------------------GT-TGTTGTT---------------------------------------------------------------------------------------------------------------------------TAAAA-TGT--GC---AGCTTTTGGCAATTTTTCTTTAAAATTTTGTTCC--------------------------------------------------------TTT-------------------------------------------------------------------ATAGCGACGTTCTTGT--------TTT--TGT-TTTTGTTT-----------------------------------------------------------TTGTAATT---C--GAG---------------------------------------------------------------CT---------------------ATGACCC
droAna3 scaffold_13260:1938536-1938768 + TAAGGATCG---GCC--GA----------------------------CTATATCCTATAGCTGCC--------------ACA-----TAACTGAA-CAT----------CCGGAATT-GGCA-TAACTGCAAGGGTA----TATC-AACTTCGGCTCC----------------------------------------------------------------------------------------------------------------GCCCAAAGTTAGCTTTCCTTTC-TTGTTT-TTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTATAATATAGTAAAAGTCTCATAAGAATAGGCCTCTCATCTGTTTGAGACAATTTGGTTTCCCACAA------------CTAAAA-A---GACGGA--------------------------------------------TGTGTGCAAAGTTTCAACTCGATA---GCT
droBip1 scf7180000395032:5212-5451 + TATATATTC--CTAT--TCCCAT----AAGGATCGGCC-------AACTATATCCGATGTTTGCG--------------ATAT------------ATAT----------C------CGGTT-TTAACTGCAAGAGTA----TATA-AACTTCGGCTCC----------------------------------------------------------------------------------------------------------------GCCCGAAGTTAGCTTTCCTTTC-TTGTTT-TTATT-------------------------------------GAA-----------------------------TGGG----------AAATTCTGATTATAAATTTGTCGGAT--------------------------------------------------------------------------------------------------------------------------TTAGAACAAGGACCATATATTTTACATTT--TTT-TATAATCTTTTG--------------------------------------------------------------------------AACATA--A--GCC-AA--------------------------------------------TAT--TTAAAATATCA-AA---TA-TCAAT
droKik1 scf7180000302441:526004-526241 + TTTAGTGTC--TGTT--TT--CGGC------------A---------TTAT--------------AATTTATAAT----ATAA------------ATAT----------G------AAAAC-CAATCTGCAAGGGTA----TACA-AACTTCGGCGTGC-CGAAGTTAGCT-TCCTTTC------------------------------------------------------------------------------------------------------------------TTGTTT-TTTAA-------------------------------------TAAAGTTAATCAATATTTATAAAAA-TGT--AC---ACTATTAGGA--AATGT---------------------------AATTAACCATGTCTTCTTTTCATTA------------------AA--------------------------------------------------------------------------------------------------------AATGATTT-----------------------------------------------------------GGT-A------A--TAAAAAAAATG-C---ATCA-A--------------------------------------------AGT---AAAAAATTCAAATTATTTACTCAT
droFic1 scf7180000453473:6298-6527 - AATATAGAG--TTTTCTAA--CGAC------------TCTTGAATAGCA----------------------------------AATAAAATT----------------TTCGAAATATTTGA-TGACTGCAAGGGTA----TATA-AGCTTCGGCTTGC-CGAAGCTAGCT-TCCTTTC------------------------------------------------------------------------------------------------------------------TTGTTT-TT-----CGCTTTTTTT--------------------------------------GAT------------------------------AAACTCTAATTTTAAACCTATTGAATTGAAACT-------------------------------------------------TGGTTTGAAT------------------AC---------------------------------------------------------------------------ATTT-----------------------------------------------------------TGTAAGCT---C--CCAAGATGAAC-T---ACCAAC--------------------------------------------TTT--CAAATAATTTGGGGCACTATTTCAT
droEle1 scf7180000491347:79955-80194 - AAATCATCATAGCTT--CAATGTTTTTA--------------AA----------------------------------------------------CATATACGCAAGTAAATTCTT-GCAA-TAGCTGCAAGGGTA----TATG-AACTTCGGCTTGC-CGAAGTTTGCT-TTCTTTC------------------------------------------------------------------------------------------------------------------TTGTTT-TTTTT-------------------------------------AGAAGTTCTTCTAGACTTATTAATA------ATATGACAGTTGAGA--ATTACGATTTTAATTATATTGAAA-----------------------------------------------------------------------------TCGGATTAC--------------------------GATATCAGAATG-------------------------------------------------------------------------------CTGCC---------------------------A--T----AGGAAC-T---GACGAA--------------------------------------------TAT--TTAA-GCTGCAAATCA-----TCAT
droRho1 scf7180000776960:102198-102429 - AACTTTGGA--TTTT--TTATAGGTTTTATTTTTGGCC-------AACT----------------------------------AATATAATT----------------TACAGA------A-TATTCTGCAAGGGTA----TA-----CTCCGGCTCC----------------------------------------------------------------------------------------------------------------GCCCGAAGTTAGCTTTCCTTTC-TTGTTT-ATTTT-------T-------------------------------------TTTTCGTTTTTTTAA---GGC--ACGTGAAAGTCAAAA--ACACCGATTT-----------------------------------------------------------------TCGCTC-------------AAAACG-TCGACTTATT-----------------------------------TG-------------------------------------------------------------------------------TTGCT---------------------------C--TAAAAATA---------ATAAA-----------------TTTTCAAAAAA-------------------------AGCTCGACAGCGTTACCT-GA
droBia1 scf7180000302098:48084-48306 + TACCAACAA--TCCT--CAAAAATT-TCA-------------CATG--------------GTGCT--------------ACA----------------------AAAGTTGATTATTTCTTA-TAAGTGCAAGGGTT----TACC-AACTTCGGCTTGC-CGAATTTAACT-TCCTTTC------------------------------------------------------------------------------------------------------------------TTGTTT-TATTA--CA-----------------------------------A----------------------------------------------------------TCATCTCAAGCTGCAACTTAGGTAGCATTATATTCCTTCAATTT------------------TG--------------------------------------------------------------------------------------------------------ACTGAATA-----------------------------------------------------------TGCACAAT---T--TAAAAAAGATA-----TACAAA--------------------------------------------AAT--ATAAAAATATA-ATTAGTTTCT-AA
droTak1 scf7180000415288:115747-115986 - AAATTAACA--TTTT--TGCGATTTG-TA-------------AA------------------------T--------------------------T------------AAT-----AGGAA-TTATCTGCAAGGGTA----TATA-AGCTTCGGCTGGC-CGAAGCTAGCT-TCCTTTC------------------------------------------------------------------------------------------------------------------TTGTTT-TATTT--CACTTTTTTT------CCTTGAAACC--ATTAAT-------------------------ATTATCGATACGATA----------TTGT-----------------------------------------------------------------------------------AGGTATGG---AT-------TTTTTTAGTTTTACTTATTGATAGTCATG-------ATCTCTACCAATGACCAT--------------------------------------------------------------------------------------------------------------GAC---TATCAATAAGTAAA----------------------ACTAAAAAAATCCATA--------------------CCTACAAT
droEug1 scf7180000408693:30-118 + TTTTTTATA--TTTT--TAATATTTTTTAT-------------A---------------TTTTTT--------------ATA-----TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTTT--------------------TT-----------------ATAT-------------------------------------------------TT-------------------------------------------------------------------------------------------------------------------------------TTTTATAT--TTTTT-TATATTTT-----------------------------------------------------------T-------------------------------------------------------------------------------TT---------------------ATATTTT
dm3 chr3L:18848928-18849078 - TATTCGTTA--ATAT--TGGAATTTAATGT-------------A--------------------------------------------------------------------------TAAA-TAACTGCAAGGGTACGTATGAA-AGCTTCGGCATGC-CAAAT-TATCT-TACTTCC-------------------------------------------------------------------------------------------------------------------TGTTTATATTTTTTA----------------TT-TTTTAT--------------------AT-----------------ATTT-------------------------------------------------AATATTATATTCTTTCTTAAT-----------------------------------------------------------------------------------------------------------------TTTTT--AAT-TATGATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT
droSim2 2r:5310639-5310794 - AAGTGATTGTATTAT--TAATAGTTTGTA-------------CA--------------------------------------------------------------------TA----ATA-TGTAGTGCAAGGGTA----TTTA-AGCCTCGGCTTGG-CAAAGCTAGAT-ATTTTTCTGGTTTTCAAAAATT--------------------------------------TTAAATTTTA--------------------------------------------------------------------------------------------------------------C-AA--TTTTTAA---GGT--ACAT-------------------------------------------------AA---------------------------------------------TATGTAA----A--GAG-T------AATTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------TTTATTT
droSec2 scaffold_6:470009-470207 - C------------------------------------------------------------------------------------------------------------------------------TTCAAGGGTA----TATA-AGCTTCGACTTGC-CGAAGCTAGCT-TTCTTTTTCGTTTTCGTTTTAAGTACACAGTATTTAAAATTTGTTGTGTTAACATTTAAAGCAAATTAAATAAATATACATTTACAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG-T------CAATCT-----------------------------------------------TTT-A-----AT--TTTTAAACTGGTTT-----------------------------------------------------------TTAATGA----C--CAAAAAACACG-T---GCCAAG--------------------------------------------TGC--TAAAAAATTTAAA------------
droYak3 2R:18125134-18125303 - CATTGACTG--TTAT--TTTTCGGTA---------------------CAAT--------------TTTTTTTCTC----GAAC------------A------------TAC-----ATATA-TTAACTGAAAGGGTA----TATT-TGCTTCGACTTGC-GAAAGGCACCTGTTCTCTGTTTTATTTGTTTTAT--------------------------------------TTCTCTCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAATCTAGTTGATATGTACATATGT---AC-------ACTCTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---------------------TTCACTT
droEre2 scaffold_4770:16384575-16384702 + TTATTTTTA--TTTT------ATTTTTTATTTTA--------TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTAT--------------------AT-----------------ATAT-------------------------------------------------TATTTTATAT--T----------------------------------------------------------------------------------------------------------------TAT-TTTTTAGTTT--TTT-TGTAATTTTTATGAT----------------------------------------G----------------------T--T------------ATG--T--ATTGTAGAAATTAAAAAAAATTCAAA-------------------AA--------------------TGTCCAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CATTTACTATTTTCC--CGGTACTTCTTA-------------GATA-------------------------GGGGCAAAGC--ACTA----TGAG-CAT----------TATGAAAAGGTT-GGGTCTGCAAGGGTA----TTAG-ATCTTGGGCGTGC-CGAAGATAGCCCTTCTTTCTCGTTTTCATTTTGT--------------------------------------TGTGGTTTTT--------------------------------------------------------------------------------------------------------------C-AGATTAATTTA---CAT--ATAT-------------------------------------------------AATATACTGAGCT----------------------------------------------------------------------------------------------------------------TTT-TTTTTCATTT--TGT-TGTGATTT-----------------------------------------------------------TTCAGATT---C--TAAAAATGAAC-C---GACAAA--------------------------------------------TAT--GCAAAAATCCAAATCGTTATCTAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................G-CAT----------TATGAAAAGGTT-GGGTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24201.25250000000000000000000000002500000000000000000000000000000000000000
...........................................................................................TGAG-CAT----------TATGAAAAGGTT-GGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.357000000000000000000000000000007000000000000000000000000000000000
...........................................................................................TGAG-CAT----------TATGAAAAGGTT-GGGTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.306000000000000000000000000005100000000000000000000000000000000000
........................................................................................................................................A----TTAG-ATCTTGGGCGTGC-CGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.251001000000000000000000000000000000000000000000000000000000000000
.............................................................................................AG-CAT----------TATGAAAAGGTT-GGGTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.204000000000030000000000000000100000000000000000000000000000000000
...............................................................................................................................TGCAAGGGTA----TTAG-ATCTTGGGCGTGC-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.171000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................TCTGCAAGGGTA----TTAG-ATCTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.171000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................TGCAAGGGTA----TTAG-ATCTTGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.171001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TATGAAAAGGTT-GGGTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.153000000000000000000000000000030000000000000000000000000000000000
........................TCTTA-------------GATA-------------------------GGGGCAAAGC--ACTA----T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGAAAAGGTT-GGGTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000000000000000000002000000000000000000000000000000000000000000
..............................................................................................G-CAT----------TATGAAAAGGTT-GG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000000000000000000000000000000200000000000000000000000000000000
..TTTACTATTTTCC--CGGTACTTCTTA-------------GA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102000000000000000000000000002000000000000000000000000000000000000
...............................................................................................................................TGCAAGGGTA----TTAG-ATCTTGGGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.091100000000000000000000000000000000000000000000000000000000000000
.........................................................................GGCAAAGC--ACTA----TGAG-CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000001000000000000000000000000000000000000000000000000000000
............TCC--CGGTACTTCTTA-------------GATA-------------------------GGGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000001000000000000000000000000000000000000000000
......................................................................................A----TGAG-CAT----------TATGAAAAGGTT-GGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000010000000000000000000000000
............................................TA-------------------------GGGGCAAAGC--ACTA----TGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000001000000000000000000000000000000000000
.........................CTTA-------------GATA-------------------------GGGGCAAAGC--ACTA----TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000001000000000000000000000000000000000000000000
.......................TTCTTA-------------GATA-------------------------GGGGCAAAGC--ACTA----TGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000010000000000000000000000000000000000000
.........TTTTCC--CGGTACTTCTTA-------------GATA-------------------------GG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
.ATTTACTATTTTCC--CGGTACTTCTTA-------------GA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
...........................TA-------------GATA-------------------------GGGGCAAAGC--ACTA----TGAG-CAT----------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................GTT-GGGTCTGCAAGGGTA----TTAG-ATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................T-GGGTCTGCAAGGGTA----TTAG-A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
...........................................ATA-------------------------GGGGCAAAGC--ACTA----TGAG-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................T-GGGTCTGCAAGGGTA----TTAG-ATCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................T----------TATGAAAAGGTT-GGGTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001000000000000000000000000000000000000000000000000000000000
...............................................................................GC--ACTA----TGAG-CAT----------TATGAAAAGGTT-GGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................TGAAAAGGTT-GGGTCTGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000001000000000000000000000000000
.................................................................................................AT----------TATGAAAAGGTT-GGGTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000001000000000000000000000000000000000000000
....................TACTTCTTA-------------GATA-------------------------GGGGCAAAGC--AC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TATGAAAAGGTT-GGGTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000010000000000000000000000000000000000000000000000000000
.................................................................................................AT----------TATGAAAAGGTT-GGGTCTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000001000000000000000000000000000000000000000000000000000000
..............................................................................AGC--ACTA----TGAG-CAT----------TATGAAAAGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
................................................................................................CAT----------TATGAAAAGGTT-GGGTCTGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................TGAAAAGGTT-GGGTCTGCAAGGGTA----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................AAAGGTT-GGGTCTGCAAGGGTA----TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
.....................................................................................TA----TGAG-CAT----------TATGAAAAGGTT-GGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000010000000000000000000000000000000000000000000000000000000
.......................................................................................................................TT-GGGTCTGCAAGGGTA----TTAG-ATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000010000000000000000000000000000000000
droMoj3
TTTTGTTTT--TGCC--TT--GTCCTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACGTTGATAAATCTACCATTCATTGATATATCCCTAATTGATCCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--TTTTCGGTTCACTT-----------------------------------------------------------T-CAGATTCAGA--TAAAAATGAAA-C---GACAAA--------------------------------------------TAT--GCAGAAATCAAAATCTTTATCTAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTCACGGC------------AATT----------------TAAC--------------------------------------------------------------------------AG-CGATCTACAAGGGTA----TTTA-AGCTTCGGCGTGT-CTAAGACTG----------------------------------------------------------------------------------------------------------------GCATTCTGTAC-TTGTTT-ATG-G--CA---------------------------------------------------------------------------------------------------------------------------ACATTGTTTGTTTGTTTTTCTATTACGCAATATTCGCAT-------------GGAATG----------CTCGA--------------------------------------------------------AT--TTG-------TCAAACTTGAT----------------------------------------T-------ATTACATACTTG---TTAAGAAAAGGAAA-C---AACAAA-AATGAAA----------------------ACCAA---------AAC----CAAAACCAAAACAACTATCTACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
CCTTTTAGC--TTAA--AC--GTTTTTC--------------CA---CTTT---------GA---AGGCTATAGGTAAAGG-----AGAACT----------------TACCAA------AA-AAGTTGCAAGGGTA----TACA-AACTTTGACGCGGTCGAAGTTAGCC-CCGGCCC----------------------------------------------------------------------------------------------------------------TCTGGTTT-TT-----AGTTTATTTTGATTTTTTTTGTAATTTTCTTAATCTA-----------------------------ATATGAAA----------TTGTG--------------------------------------------------------------CCAATACTTTTTTGGCGTGAACATGTGC---CT-------ATT-----------------------------------TT-------------------------------------------------------------------------------TTAGT----------------------TT---A--TAG--AACATAAC---TGCAAA-------------------------AAAATGCTAGGAAAATGAATT---------------------TTTATTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................TC--------------CA---CTTT---------GA---AGGCTATAGGTAAAGG-----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2650.60302010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTAGGAAAATGAATT---------------------TTTATT.2520.50100010
.....................................................................................................................................................................................................................................................................................................................................TTGTAATTTTCTTAATCTA-----------------------------ATATGAAA----------T....................................................................................................................................................................................................................................................................................................................................................................2820.50100010
......................................................................................................................................................................................................................................................................................................................................................TA-----------------------------ATATGAAA----------TTGTG--------------------------------------------------------------CCAATACTTTTT......................................................................................................................................................................................................................................................................................2720.50101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------------------------AAAATGCTAGGAAAATGA...............................2150.20101000
........................TTTC--------------CA---CTTT---------GA---AGGCTATAGGTAAAGG-----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.20100100
................................................TTT---------GA---AGGCTATAGGTAAAGG-----AGAACT----------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.20100100
.........................TTC--------------CA---CTTT---------GA---AGGCTATAGGTAAAGG-----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.20101000
.......................................................................................................................................................TGACGCGGTCGAAGTTAGCC-C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
............TAA--AC--GTTTTTC--------------CA---CTTT---------GA---AGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
......................TTTTTC--------------CA---CTTT---------GA---AGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
dp5
CCCATTTTT--TTTA--TTTTCCTTTTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTTTTCATTC----------------------------------------------TTTT-------------------------------TTTTAT--------------------AT-----------------ATAT-------------------------------------------------AT-------------------------------------------------------------------------------------------------------------------------------TTTTTAAT--TTG-------ATTTGTTTGAT----------------------------------------T----------------------T--T------------ATT--T--GTTAATTAATTTTCCTCAAATTCCTA----------------------------------------------AGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATAAAAACT--------------------------------------------------------------------------------------------------------------CT-CGATCAGCTAGGGTA----TAAAAAGCTTTGCCGCGC-CGAAGCTGGCT-TCCTTATTTGTTTTTATTTTT------------------------------------GT-TGTTGTT---------------------------------------------------------------------------------------------------------------------------TAAAA-TGT--GC---AGCTTTTGGCAATTTTTCTTTAAAATTTTGTTCC--------------------------------------------------------TTT-------------------------------------------------------------------ATAGCGACGTTCTTGT--------TTT--TGT-TTTTGTTT-----------------------------------------------------------TTGTAATT---C--GAG---------------------------------------------------------------CT---------------------ATGACCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TAAGGATCG---GCC--GA----------------------------CTATATCCTATAGCTGCC--------------ACA-----TAACTGAA-CAT----------CCGGAATT-GGCA-TAACTGCAAGGGTA----TATC-AACTTCGGCTCC----------------------------------------------------------------------------------------------------------------GCCCAAAGTTAGCTTTCCTTTC-TTGTTT-TTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTATAATATAGTAAAAGTCTCATAAGAATAGGCCTCTCATCTGTTTGAGACAATTTGGTTTCCCACAA------------CTAAAA-A---GACGGA--------------------------------------------TGTGTGCAAAGTTTCAACTCGATA---GCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................TAACTGAA-CAT----------CCGGAATT-GGCA-TA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAAAGTTTCAACTCGA........21200.459000009
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--------------------------------------------TGTGTGCAAAGTTTCAACTCGATA---GC.28200.204040000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTGTTTGAGACAATTTGGTTTCCCA..........................................................................................................29100.101100000
......................................................CTATAGCTGCC--------------ACA-----TAACTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
........................................................................................................................CA-TAACTGCAAGGGTA----TATC-AACTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
.........................................................................................................................A-TAACTGCAAGGGTA----TATC-AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
............GCC--GA----------------------------CTATATCCTATAGCTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
droBip1
TATATATTC--CTAT--TCCCAT----AAGGATCGGCC-------AACTATATCCGATGTTTGCG--------------ATAT------------ATAT----------C------CGGTT-TTAACTGCAAGAGTA----TATA-AACTTCGGCTCC----------------------------------------------------------------------------------------------------------------GCCCGAAGTTAGCTTTCCTTTC-TTGTTT-TTATT-------------------------------------GAA-----------------------------TGGG----------AAATTCTGATTATAAATTTGTCGGAT--------------------------------------------------------------------------------------------------------------------------TTAGAACAAGGACCATATATTTTACATTT--TTT-TATAATCTTTTG--------------------------------------------------------------------------AACATA--A--GCC-AA--------------------------------------------TAT--TTAAAATATCA-AA---TA-TCAATSizeHit CountTotal NormTotal
No Reads
droKik1
TTTAGTGTC--TGTT--TT--CGGC------------A---------TTAT--------------AATTTATAAT----ATAA------------ATAT----------G------AAAAC-CAATCTGCAAGGGTA----TACA-AACTTCGGCGTGC-CGAAGTTAGCT-TCCTTTC------------------------------------------------------------------------------------------------------------------TTGTTT-TTTAA-------------------------------------TAAAGTTAATCAATATTTATAAAAA-TGT--AC---ACTATTAGGA--AATGT---------------------------AATTAACCATGTCTTCTTTTCATTA------------------AA--------------------------------------------------------------------------------------------------------AATGATTT-----------------------------------------------------------GGT-A------A--TAAAAAAAATG-C---ATCA-A--------------------------------------------AGT---AAAAAATTCAAATTATTTACTCATSizeHit CountTotal NormTotal
No Reads
droFic1
AATATAGAG--TTTTCTAA--CGAC------------TCTTGAATAGCA----------------------------------AATAAAATT----------------TTCGAAATATTTGA-TGACTGCAAGGGTA----TATA-AGCTTCGGCTTGC-CGAAGCTAGCT-TCCTTTC------------------------------------------------------------------------------------------------------------------TTGTTT-TT-----CGCTTTTTTT--------------------------------------GAT------------------------------AAACTCTAATTTTAAACCTATTGAATTGAAACT-------------------------------------------------TGGTTTGAAT------------------AC---------------------------------------------------------------------------ATTT-----------------------------------------------------------TGTAAGCT---C--CCAAGATGAAC-T---ACCAAC--------------------------------------------TTT--CAAATAATTTGGGGCACTATTTCATSizeHit CountTotal NormTotal
No Reads
droEle1
AAATCATCATAGCTT--CAATGTTTTTA--------------AA----------------------------------------------------CATATACGCAAGTAAATTCTT-GCAA-TAGCTGCAAGGGTA----TATG-AACTTCGGCTTGC-CGAAGTTTGCT-TTCTTTC------------------------------------------------------------------------------------------------------------------TTGTTT-TTTTT-------------------------------------AGAAGTTCTTCTAGACTTATTAATA------ATATGACAGTTGAGA--ATTACGATTTTAATTATATTGAAA-----------------------------------------------------------------------------TCGGATTAC--------------------------GATATCAGAATG-------------------------------------------------------------------------------CTGCC---------------------------A--T----AGGAAC-T---GACGAA--------------------------------------------TAT--TTAA-GCTGCAAATCA-----TCATSizeHit CountTotal NormTotal
No Reads
droRho1
AACTTTGGA--TTTT--TTATAGGTTTTATTTTTGGCC-------AACT----------------------------------AATATAATT----------------TACAGA------A-TATTCTGCAAGGGTA----TA-----CTCCGGCTCC----------------------------------------------------------------------------------------------------------------GCCCGAAGTTAGCTTTCCTTTC-TTGTTT-ATTTT-------T-------------------------------------TTTTCGTTTTTTTAA---GGC--ACGTGAAAGTCAAAA--ACACCGATTT-----------------------------------------------------------------TCGCTC-------------AAAACG-TCGACTTATT-----------------------------------TG-------------------------------------------------------------------------------TTGCT---------------------------C--TAAAAATA---------ATAAA-----------------TTTTCAAAAAA-------------------------AGCTCGACAGCGTTACCT-GASizeHit CountTotal NormTotal
No Reads
droBia1
TACCAACAA--TCCT--CAAAAATT-TCA-------------CATG--------------GTGCT--------------ACA----------------------AAAGTTGATTATTTCTTA-TAAGTGCAAGGGTT----TACC-AACTTCGGCTTGC-CGAATTTAACT-TCCTTTC------------------------------------------------------------------------------------------------------------------TTGTTT-TATTA--CA-----------------------------------A----------------------------------------------------------TCATCTCAAGCTGCAACTTAGGTAGCATTATATTCCTTCAATTT------------------TG--------------------------------------------------------------------------------------------------------ACTGAATA-----------------------------------------------------------TGCACAAT---T--TAAAAAAGATA-----TACAAA--------------------------------------------AAT--ATAAAAATATA-ATTAGTTTCT-AASizeHit CountTotal NormTotal
No Reads
droTak1
AAATTAACA--TTTT--TGCGATTTG-TA-------------AA------------------------T--------------------------T------------AAT-----AGGAA-TTATCTGCAAGGGTA----TATA-AGCTTCGGCTGGC-CGAAGCTAGCT-TCCTTTC------------------------------------------------------------------------------------------------------------------TTGTTT-TATTT--CACTTTTTTT------CCTTGAAACC--ATTAAT-------------------------ATTATCGATACGATA----------TTGT-----------------------------------------------------------------------------------AGGTATGG---AT-------TTTTTTAGTTTTACTTATTGATAGTCATG-------ATCTCTACCAATGACCAT--------------------------------------------------------------------------------------------------------------GAC---TATCAATAAGTAAA----------------------ACTAAAAAAATCCATA--------------------CCTACAATSizeHit CountTotal NormTotal
No Reads
droEug1
TTTTTTATA--TTTT--TAATATTTTTTAT-------------A---------------TTTTTT--------------ATA-----TTTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTTT--------------------TT-----------------ATAT-------------------------------------------------TT-------------------------------------------------------------------------------------------------------------------------------TTTTATAT--TTTTT-TATATTTT-----------------------------------------------------------T-------------------------------------------------------------------------------TT---------------------ATATTTTSizeHit CountTotal NormTotal
No Reads
dm3
TATTCGTTA--ATAT--TGGAATTTAATGT-------------A--------------------------------------------------------------------------TAAA-TAACTGCAAGGGTACGTATGAA-AGCTTCGGCATGC-CAAAT-TATCT-TACTTCC-------------------------------------------------------------------------------------------------------------------TGTTTATATTTTTTA----------------TT-TTTTAT--------------------AT-----------------ATTT-------------------------------------------------AATATTATATTCTTTCTTAAT-----------------------------------------------------------------------------------------------------------------TTTTT--AAT-TATGATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
AAGTGATTGTATTAT--TAATAGTTTGTA-------------CA--------------------------------------------------------------------TA----ATA-TGTAGTGCAAGGGTA----TTTA-AGCCTCGGCTTGG-CAAAGCTAGAT-ATTTTTCTGGTTTTCAAAAATT--------------------------------------TTAAATTTTA--------------------------------------------------------------------------------------------------------------C-AA--TTTTTAA---GGT--ACAT-------------------------------------------------AA---------------------------------------------TATGTAA----A--GAG-T------AATTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------TTTATTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
C------------------------------------------------------------------------------------------------------------------------------TTCAAGGGTA----TATA-AGCTTCGACTTGC-CGAAGCTAGCT-TTCTTTTTCGTTTTCGTTTTAAGTACACAGTATTTAAAATTTGTTGTGTTAACATTTAAAGCAAATTAAATAAATATACATTTACAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG-T------CAATCT-----------------------------------------------TTT-A-----AT--TTTTAAACTGGTTT-----------------------------------------------------------TTAATGA----C--CAAAAAACACG-T---GCCAAG--------------------------------------------TGC--TAAAAAATTTAAA------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CATTGACTG--TTAT--TTTTCGGTA---------------------CAAT--------------TTTTTTTCTC----GAAC------------A------------TAC-----ATATA-TTAACTGAAAGGGTA----TATT-TGCTTCGACTTGC-GAAAGGCACCTGTTCTCTGTTTTATTTGTTTTAT--------------------------------------TTCTCTCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAATCTAGTTGATATGTACATATGT---AC-------ACTCTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---------------------TTCACTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TTATTTTTA--TTTT------ATTTTTTATTTTA--------TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTAT--------------------AT-----------------ATAT-------------------------------------------------TATTTTATAT--T----------------------------------------------------------------------------------------------------------------TAT-TTTTTAGTTT--TTT-TGTAATTTTTATGAT----------------------------------------G----------------------T--T------------ATG--T--ATTGTAGAAATTAAAAAAAATTCAAA-------------------AA--------------------TGTCCAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 05:19 AM