dvi_21827

Species	Coordinate	ID	Alignment
droVir3	scaffold_13246:236957-237207 +	dvi_21827	GGCATAGAATTTCGCTGTCAATCGCAA--AATGAA--AA-TGAAAATAAACTGCTTTGTCCGGCAATTTTAG--C------TGGCGAGTCTACTCGGTGCTGCCAAA-GTGGCGTCGCGGTG-C---CTTTGTCTGGGAATTCGTATAT-AC-TTATCACATATAT---------------------------------------------------------------------------ATTCTACAA------------------------------------------------ATACATAACA--------GCA-------------------TC---------------GGTTGAT--T---TA----------TTATTTT------A---TC---ATA-T-------TTTTTAGACAAAATGTGCGATCAAATTAGTGATGCCATCCTAGATGCCCATCTACGA
droMoj3	scaffold_6500:230285-230566 +		GGTATTCAATTTCGCTGTCAATCGCGA--AATAAA--AA-TCAAAATAAACTGCATTGTCTGTCAATTTTAG--C------TG----GTGTCGGCGTCGG---CGT---TGGCGTTGGAGTCCGAAGGTTTGTCTGGCTGCTCCTATAC-A---------------------CTTTTTT-CACATC---GC----------------------------------------------------------------------------------------CATGTTAAATGTAGATAATGTGCTAATAGAACTCATAATATAAACAACAT-----TATGAT---------------------TCTCAC-AA---C----------ATT---TT-A---AT---TTA-TA-TTTCTTTTATAGACAAAATGTGCGATCAAATTAGCGATGCTATCTTGGATGCCCATCTTCGA
droGri2	scaffold_15252:17053127-17053335 -		GGCATTGAATTTCGCTGTCATTCGCAA--AATGAA--AA-TCCAAATTATCAG----------CAATTTCCT--G-----------CGTCTGGTTTATAT---TTTCAGTGGGGTTGGTG---G---CATTGCCTGGG-------------------CACA------GTTCTTTCAAC-AATTCCTCCC--------------------------------------------------------------------------------------T----------------------------------------------------------TCTAAT---------------------TCTAAAT-----------------CG---ACTC---TT---ATC-T-------TTTGCAGACAAAATGTGCGATCAAATCAGTGATGCTATCCTGGATGCCCATCTCCGA
droWil2	scf2_1100000004585:1821790-1822033 +		GGCATTGAATTTCGCTGTCAATTGCAA--AATGAA--AA-TGAAAATAAACTGCATGGCCTGGCAAATTTTCG-TGGCTATCGTCGCGTCTAGGCGGCGT---CAGTA-------------------------------------C-A-----------------CCGCCATCTCCCT-AACCCCTCCCCC----------------------------------------------------------------------------------------------------------CATTC--------------------ACCCTCT-TTCATCTACCTATCGTCTTGATGTA-------TAACATAA------TCT------CT---TCTA---TT---TTC-------TTTTTACAGACAAAATGTGTGATCAAATCAGTGACGCCATTCTCGATGCACATCTAAAA
dp5	4_group2:14908-15188 -		GGTATTGAATTTCGCTGTCAATCGCAG--ACTGAAAAAA-TTAAAATAAACTGCATGGCCCAGCAATTTTTT--C------TGTCGCGCCTGGTCGGCGA---CAAA-----TGTCGGGG---GA------------AAGCACATA-------------------------------------------------------------------------------------ACTGGCAACTATTTGGCACACTCGCTCTACCCGCATCCTCTCCCTCCCATTGTCCATTGCAGT---TGTGCTTTTCG--------ATA--CAAATTTTA----TATAAT---------------------T--T---TC----------TTATTCT----CTG---CT---CTT-T-------TTTACAGACAAAATGTGCGATCAAATCAGCGATGCTATCTTGGATGCACATCTCAAG
droPer2	scaffold_8:3880625-3880905 +		GGTATTGAATTTCGCTGTCAATCGCAG--ACTGAAAAAA-TTAAAATAAACTGCATGGCCCAGCAATTTTTT--C------TGTCGCGCCTGGTCGGCGA---CAAA-----TGTCGGGG---GA------------AAGCACATA-------------------------------------------------------------------------------------ACTGGCAACTATTTGGCACACTCGCTCTACCCGCATCCTCTCCCTCCCATTGTCCATTGCAGT---TCTGCTTTCCG--------ATA--CAAATTTTA----TATAAT---------------------T--T---TC----------TTATTCT----CTG---CT---CTT-T-------TTTACAGACAAAATGTGCGATCAAATCAGCGATGCTATCTTGGATGCACATCTCAAG
droAna3	scaffold_12916:1998013-1998277 -		GGCATTGAATTTCGCTGTCAATCGCAG--ACTGAA--AAGTTAAAATAAACTGCACTGCCCGGCAATTTTCG--C-----------CGCCTAGTCGGCGA---CTGAA-------------------------------------G-AGA-------CACCGTTGCCGCT----------GCCCCTGCCGCCGCTGTCGTCAGGGACATAGACTGGGGAGCTAGCACATCTGCGAGCAACTATTTGGCACACC---------------------------------------------------------------------------------------------------------------CACTAAGAGCAGTCG-----CCTCTCTC-T---CC---CTA-T-------TTTTCAGACAAAATGTGCGACCAGATCAGCGACGCTATTTTGGATGCCCATCTGAAG
droBip1	scf7180000396728:652129-652390 -		GGCATTGAATTTCGCTGTCAATCGCAG--ACTGAA--AAGTTAAAATAAACTGCACTGCCCGGCAATTTTCG--C-----------CGCCTAGGCGGCGA---CTGAA-------------------------------------G-AGC-------CACCAACACCGCC----------ACCGCCGCCGG-GCCAGGGGCAGGGGCAGAGATTGGGGAGCTAGCACATCTGCGAGCAACTATTTGGCACACC---------------------------------------------------------------------------------------------------------------CACTAAGAGCCGTCG--------------C---CT---CTCTT--CTTGCTTTTCAGACAAAATGTGCGACCAGATCAGCGACGCTATTTTGGACGCCCACCTGAAG
droKik1	scf7180000302570:972684-972901 +		GGCATTGAATTTCGCTGTCAATCGCAGAGACTGAA--AT-TTAAAATAAACTGCATGGCCCGGCAATTTTCGTTT------T-------------------------------GTTGGGA---G-------------GGGACCAAG-AGCA--ACACTACATA---------------------------C----------------------------------------------AATT-TCTGGCGCAC-----------------------------------------------------------------T-----------------------------------------------ACAAGGAGCATTCTCTTACACGCTCTC-T---CC---CTT-TTTTTCTATTTGCAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG
droFic1	scf7180000453904:1410094-1410348 +		GGCATTGAATTTCGCTAGCACTCGCAG--AGTGAA--AA-TTAAAATAAACCGCATGGCCTGGCAATTTTT---C------GGTGTCGCCTAGCAGGCGA---CAAA-----CGTTGGGG---G-------------GAGCGCGTGAGT-AT-TTGGCACATCCGCTGCCCCCTCTACT-CCCCCG---GC----------------------------------------------------------------------------------------------------------GATGCTTGGCA--------GTG--CACCTTCT-----CGTACC---------------------TCTCACTAA--------------CCT---TC-T---CCC--TTG-T------GTTTGCAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG
droEle1	scf7180000490216:27306-27542 +		GGCATTGAATTTCG----------CAG--ACTAAA--AA-TTAAAATAAACCGC-TGGCCCGGCAATTTTTG--C------TGTCTCGCCTAGGCAGCGA---AAAG-----TGTTGGGG---G-------------GAGCGCGTATTT-AT-TTGGCACAAACGCTGCC------AT-GC-TTCGGCCGC----------------------------------------------------------------------------------------------------------AATGTTTGGCG--------CTA--CACATTTT-----CGTAAC---------------------TCGCACTAA--------------CCT---T------CT---CTC-T-------TTTACAGACAAAATGTGCGACCAAATCAGCGACGCTATATTAGATGCCCATCTGAAG
droRho1	scf7180000779252:119492-119752 +		GGCATTGAATTTCGCTGTCAATAGCAG--ACTGAA--AA-TTAAAATAAACCGCTTGGCCTGGCATTTTTAG--C------TGTCTCGCCTAGGCGGCGA---AAAA-----TGTTGGGT---A-------------GAGCGCGTATGT-ATTTTGGCACAAACGGTGGTCATTCCCCTGCCCCCGGCCAC----------------------------------------------------------------------------------------------------------GATTCTTGGCG--------GTATAAAAATGTT-----CATATC---------------------TCGCACTAA--------------CCT---TC-A---CC---CTC-T-------CTTGCAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTAGATGCCCATCTGAAG
droBia1	scf7180000301547:163810-164066 -		GGCATTGAATTTCGCTGGCAATCGCAG--ACTGAA--AA-TTAAAATAAATCGCATGGCCTGGCAATTTTTT--C------TGTCTCGCCTAGGCGGCGA---CAAT-----CGTTGGGG---G-------------GAGCGCGTGTGT-AT-TTGGCACAAACGCTGCTCCTTCTGCT-GCCTTGGGTGC----------------------------------------------------------------------------------------------------------GATGCTTGGCG--------GTA--CACACTAT-----CGTATC---------------------T-GTACTAA--------------CCT---TCTG---CT---CTC-T-------TTTGCAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG
droTak1	scf7180000413017:450179-450436 -		GGCATTGAATTTCGCTGGCTATCGCAG--ACTGAA--AA-TTAAAATAAATCGCATGGCCTGGCAATTTTT---C------TGTCTCGCCTAGGCGGCGG---CAAT-----CGTTTGGG---GG------------GAGCGCGTGTGT-AT-TTGGCACAAACGCTGCTCCTTCCACA-TCCCCTGCCGC----------------------------------------------------------------------------------------------------------GATGCTTGGCG--------GTA--CACGTTTC-----CGTAGC---------------------TC-TACTTA--------------CCT---TCTC---CT---CTCTT-------CTTGCAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG
droEug1	scf7180000409154:103419-103672 +		G-CATTGAATTTCGCTGGCAAATGCAG--ACTGAA--AG-TTAAAATAAACCGCATGGCATGGCACTTTT-G--T------TGTCTCGCCTAGGCGGCGA---CAAA-----TGTTGGAG---G-------------GTTTTTATATGT-AT-TTAGCATCAACGTTGCTCCCTTCATT-CCCCCGACCAC----------------------------------------------------------------------------------------------------------GATGCTTGGCG--------GTA--ACCATTTT-----TATTCC---------------------CTTTATTAA--------------CCT---CC-T---CC---CT--T-------ATTGTAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG
dm3	chr2L:110225-110455 +		GGAATTGAATTTCGCTGTCAATAGCAG--ACAG-----A-TTAAATGAAACCGCATGGCCCAGCAAATTTTGATC------CGTCGCACT--------GA---ATAA-----C-------------------------------------ATTTTGGC----CCGTTCCTCCTTCCACT-C-CCCGACAAA----------------------------------------------------------------------------------------------------------AATGCTTTCCC--------CTC--CTTCTTCG-----CCCACC---------------------TCTGGCTTA--------------CCT---CTTGCTTACCTTATT-T-------TTTTTAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG
droSim2	2l:96568-96623 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG
droSec2	scaffold_14:109681-109739 +		A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TTTGTAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG
droYak3	2L:99775-99832 +		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TTTGTAGACAAAATGTGCGACCAGATCAGCGACGCAATCTTGGATGCCCATCTAAAG
droEre2	scaffold_4929:138613-138670 +		----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TTTGTAGACAAAATGTGCGACCAAATCAGCGACGCAATCTTGGATGCCCATCTGAAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GGCATAGAATTTCGCTGTCAATCGCAA--AATGAA--AA-TGAAAATAAACTGCTTTGTCCGGCAATTTTAG--C------TGGCGAGTCTACTCGGTGCTGCCAAA-GTGGCGTCGCGGTG-C---CTTTGTCTGGGAATTCGTATAT-AC-TTATCACATATAT---------------------------------------------------------------------------ATTCTACAA------------------------------------------------ATACATAACA--------GCA-------------------TC---------------GGTTGAT--T---TA----------TTATTTT------A---TC---ATA-T-------TTTTTAGACAAAATGTGCGATCAAATTAGTGATGCCATCCTAGATGCCCATCTACGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTAGTGATGCCATCCTAGATG...........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGATCAAATTAGTGAT........................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGATGCCATCCTAGATGCCCAT......	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGATCAAATTAGTGATGCCATC..................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGATCAAATTAGTGATGCCA....................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGACAAAATGTGCGATCAAA................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTAGTGATGCCATCCT................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATCAAATTAGTGATGCCATCCTA...............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAATGTGCGATCAAATTAGTGA.........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCATCCTAGATGCCC........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCCATCCTAGATGCC.........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTGATGCCATCCTAGATGCCCA.......	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGTGATGCCATCCTAGA.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CAAA-GTGGCGTCGCGGTG-C---CTT.....................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCATCCTAGATGCCCAT......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTAGTGATGCCATCCTAGATGCC.........	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCGATCAAATTAGTGATGCC.....................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATCCTAGATGCCCATC.....	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGTATTCAATTTCGCTGTCAATCGCGA--AATAAA--AA-TCAAAATAAACTGCATTGTCTGTCAATTTTAG--C------TG----GTGTCGGCGTCGG---CGT---TGGCGTTGGAGTCCGAAGGTTTGTCTGGCTGCTCCTATAC-A---------------------CTTTTTT-CACATC---GC----------------------------------------------------------------------------------------CATGTTAAATGTAGATAATGTGCTAATAGAACTCATAATATAAACAACAT-----TATGAT---------------------TCTCAC-AA---C----------ATT---TT-A---AT---TTA-TA-TTTCTTTTATAGACAAAATGTGCGATCAAATTAGCGATGCTATCTTGGATGCCCATCTTCGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCGATCAAATTAGCGATGCT.....................	25	1	1.00	1	0	0	0	1	0	0
..................................A--AA-TCAAAATAAACTGCATTGT............................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCTATCTTGGATGCCCAT......	22	1	1.00	1	1	0	0	0	0	0

droGri2

GGCATTGAATTTCGCTGTCATTCGCAA--AATGAA--AA-TCCAAATTATCAG----------CAATTTCCT--G-----------CGTCTGGTTTATAT---TTTCAGTGGGGTTGGTG---G---CATTGCCTGGG-------------------CACA------GTTCTTTCAAC-AATTCCTCCC--------------------------------------------------------------------------------------T----------------------------------------------------------TCTAAT---------------------TCTAAAT-----------------CG---ACTC---TT---ATC-T-------TTTGCAGACAAAATGTGCGATCAAATCAGTGATGCTATCCTGGATGCCCATCTCCGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCGATCAAATCAGTGATG.......................	24	1	1.00	1	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGTGCGATCAAATCAGTGATG.......................	26	1	1.00	1	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTGGATGCCCATCTCC..	19	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCGATCAAATCAGTGATG.......................	23	1	1.00	1	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGATCAAATCAGTGATGCTATC..................	24	1	1.00	1	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGATCAAATCAGTGA.........................	19	1	1.00	1	0	1

droWil2

GGCATTGAATTTCGCTGTCAATTGCAA--AATGAA--AA-TGAAAATAAACTGCATGGCCTGGCAAATTTTCG-TGGCTATCGTCGCGTCTAGGCGGCGT---CAGTA-------------------------------------C-A-----------------CCGCCATCTCCCT-AACCCCTCCCCC----------------------------------------------------------------------------------------------------------CATTC--------------------ACCCTCT-TTCATCTACCTATCGTCTTGATGTA-------TAACATAA------TCT------CT---TCTA---TT---TTC-------TTTTTACAGACAAAATGTGTGATCAAATCAGTGACGCCATTCTCGATGCACATCTAAAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCAGTGACGCCATTCT................	20	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGACGCCATTCTCGAT............	19	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................C-------TTTTTACAGACAAAATGTGTGAT....................................	24	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGATCAAATCAGTGACGC......................	22	1	1.00	1	0	0	0	1	0

dp5

GGTATTGAATTTCGCTGTCAATCGCAG--ACTGAAAAAA-TTAAAATAAACTGCATGGCCCAGCAATTTTTT--C------TGTCGCGCCTGGTCGGCGA---CAAA-----TGTCGGGG---GA------------AAGCACATA-------------------------------------------------------------------------------------ACTGGCAACTATTTGGCACACTCGCTCTACCCGCATCCTCTCCCTCCCATTGTCCATTGCAGT---TGTGCTTTTCG--------ATA--CAAATTTTA----TATAAT---------------------T--T---TC----------TTATTCT----CTG---CT---CTT-T-------TTTACAGACAAAATGTGCGATCAAATCAGCGATGCTATCTTGGATGCACATCTCAAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGCTATCTTGGATGC..........	20	1	2.00	2	0	1	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCTTGGATGCACATCTC...	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTATCTTGGATGCAC........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................GGCACACTCGCTCTACCCGC..............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATGCTATCTTGGATG...........	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCTATCTTGGATGCACAT......	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAATGTGCGATCAAATC..............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....TGAATTTCGCTGTCAATCGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGATGCTATCTTGGAT............	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCGATGCTATCTTGGATG...........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................T---------------------T--T---TC----------TTATTCT----CTG---CT---CTT-T-------.........................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................TTATTCT----CTG---CT---CTT-T-------TTTACAG..................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGCTATCTTGGATGCA.........	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAATCAGCGATGCTATCTTGG..............	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGATCAAATCAGCGATGCTATCT.................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................ATCCTCTCCCTCCCATTGTCC.........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGATCAAATCAGCGATGCTATC..................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................TCGGCGA---CAAA-----TGTCGGGG---G...........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCGATCAAATCA.............................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGTATTGAATTTCGCTGTCAATCGCAG--ACTGAAAAAA-TTAAAATAAACTGCATGGCCCAGCAATTTTTT--C------TGTCGCGCCTGGTCGGCGA---CAAA-----TGTCGGGG---GA------------AAGCACATA-------------------------------------------------------------------------------------ACTGGCAACTATTTGGCACACTCGCTCTACCCGCATCCTCTCCCTCCCATTGTCCATTGCAGT---TCTGCTTTCCG--------ATA--CAAATTTTA----TATAAT---------------------T--T---TC----------TTATTCT----CTG---CT---CTT-T-------TTTACAGACAAAATGTGCGATCAAATCAGCGATGCTATCTTGGATGCACATCTCAAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCTATCTTGGATGC..........	18	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGATGCTATCTTGGATGC..........	20	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGATGCACATCTC...	18	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTTGGATGCACATCTC...	19	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAGCGATGCTATCTTGG..............	21	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCGATGCTATCTTG...............	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCGATGCTATCTTGGATGC..........	24	1	1.00	1	0	0	1	0	0	0
............................................................CAGCAATTTTTT--C------TGTCGCGC..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTATCTTGGATGCACATCT....	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCGATGCTATCTTGG..............	20	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAAATCAGCGATGCTATCTTGGATGC..........	29	1	1.00	1	1	0	0	0	0	0

droAna3

GGCATTGAATTTCGCTGTCAATCGCAG--ACTGAA--AAGTTAAAATAAACTGCACTGCCCGGCAATTTTCG--C-----------CGCCTAGTCGGCGA---CTGAA-------------------------------------G-AGA-------CACCGTTGCCGCT----------GCCCCTGCCGCCGCTGTCGTCAGGGACATAGACTGGGGAGCTAGCACATCTGCGAGCAACTATTTGGCACACC---------------------------------------------------------------------------------------------------------------CACTAAGAGCAGTCG-----CCTCTCTC-T---CC---CTA-T-------TTTTCAGACAAAATGTGCGACCAGATCAGCGACGCTATTTTGGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCAGATCAGCGACGCT.....................	19	1	5.00	5	0	3	1	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCAGATCAGCGACGC......................	18	1	3.00	3	2	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAGATCAGCGACGCT.....................	20	1	2.00	2	0	0	0	0	1	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAATGTGCGACCAGATCAGC...........................	24	1	2.00	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCGACCAGATCAGCGACGCT.....................	26	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTGCGACCAGATCAGC...........................	21	1	2.00	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCGACCAGATCAG............................	19	1	2.00	2	0	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGACCAGATCAGCGACGCC.....................	22	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAGATCAGCGACGC......................	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGATCAGCGACGCT.....................	18	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAATGTGCGACCAGATCAGCGAC........................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGTGCGACCAGATCAGCGACGCT.....................	28	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCTATTTTGGATGCC.........	18	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGATCAGCGACGCTATT..................	21	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGATCAGCGACGCTA....................	18	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGACGCTATTTTGGATGCCCATCT....	27	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAGATCAGCGACGCC.....................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGACCAGATCAGCGACGCT.....................	24	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGACCAGATCAGCGAC........................	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCGACCAGATCAGCGA.........................	22	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAGATCAGCGACG.......................	18	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACGCTATTTTGGATGCCCATC.....	25	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGACCAGATCAGCGA.........................	19	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCTATTTTGGATGCCC........	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGATCAGCGACGCTATTT.................	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCGACCAGATCAGCG..........................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCGACCAGATCAGCGG.........................	21	1	1.00	1	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGACCAGATCAGCGACGCT.....................	22	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGATCAGCGACGCTAC...................	20	1	1.00	1	0	1	0	0	0	0

droBip1

GGCATTGAATTTCGCTGTCAATCGCAG--ACTGAA--AAGTTAAAATAAACTGCACTGCCCGGCAATTTTCG--C-----------CGCCTAGGCGGCGA---CTGAA-------------------------------------G-AGC-------CACCAACACCGCC----------ACCGCCGCCGG-GCCAGGGGCAGGGGCAGAGATTGGGGAGCTAGCACATCTGCGAGCAACTATTTGGCACACC---------------------------------------------------------------------------------------------------------------CACTAAGAGCCGTCG--------------C---CT---CTCTT--CTTGCTTTTCAGACAAAATGTGCGACCAGATCAGCGACGCTATTTTGGACGCCCACCTGAAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGCATTGAATTTCGCTGTCAATCGCAGAGACTGAA--AT-TTAAAATAAACTGCATGGCCCGGCAATTTTCGTTT------T-------------------------------GTTGGGA---G-------------GGGACCAAG-AGCA--ACACTACATA---------------------------C----------------------------------------------AATT-TCTGGCGCAC-----------------------------------------------------------------T-----------------------------------------------ACAAGGAGCATTCTCTTACACGCTCTC-T---CC---CTT-TTTTTCTATTTGCAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGCATTGAATTTCGCTAGCACTCGCAG--AGTGAA--AA-TTAAAATAAACCGCATGGCCTGGCAATTTTT---C------GGTGTCGCCTAGCAGGCGA---CAAA-----CGTTGGGG---G-------------GAGCGCGTGAGT-AT-TTGGCACATCCGCTGCCCCCTCTACT-CCCCCG---GC----------------------------------------------------------------------------------------------------------GATGCTTGGCA--------GTG--CACCTTCT-----CGTACC---------------------TCTCACTAA--------------CCT---TC-T---CCC--TTG-T------GTTTGCAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGCATTGAATTTCG----------CAG--ACTAAA--AA-TTAAAATAAACCGC-TGGCCCGGCAATTTTTG--C------TGTCTCGCCTAGGCAGCGA---AAAG-----TGTTGGGG---G-------------GAGCGCGTATTT-AT-TTGGCACAAACGCTGCC------AT-GC-TTCGGCCGC----------------------------------------------------------------------------------------------------------AATGTTTGGCG--------CTA--CACATTTT-----CGTAAC---------------------TCGCACTAA--------------CCT---T------CT---CTC-T-------TTTACAGACAAAATGTGCGACCAAATCAGCGACGCTATATTAGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGCATTGAATTTCGCTGTCAATAGCAG--ACTGAA--AA-TTAAAATAAACCGCTTGGCCTGGCATTTTTAG--C------TGTCTCGCCTAGGCGGCGA---AAAA-----TGTTGGGT---A-------------GAGCGCGTATGT-ATTTTGGCACAAACGGTGGTCATTCCCCTGCCCCCGGCCAC----------------------------------------------------------------------------------------------------------GATTCTTGGCG--------GTATAAAAATGTT-----CATATC---------------------TCGCACTAA--------------CCT---TC-A---CC---CTC-T-------CTTGCAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTAGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGCATTGAATTTCGCTGGCAATCGCAG--ACTGAA--AA-TTAAAATAAATCGCATGGCCTGGCAATTTTTT--C------TGTCTCGCCTAGGCGGCGA---CAAT-----CGTTGGGG---G-------------GAGCGCGTGTGT-AT-TTGGCACAAACGCTGCTCCTTCTGCT-GCCTTGGGTGC----------------------------------------------------------------------------------------------------------GATGCTTGGCG--------GTA--CACACTAT-----CGTATC---------------------T-GTACTAA--------------CCT---TCTG---CT---CTC-T-------TTTGCAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGCATTGAATTTCGCTGGCTATCGCAG--ACTGAA--AA-TTAAAATAAATCGCATGGCCTGGCAATTTTT---C------TGTCTCGCCTAGGCGGCGG---CAAT-----CGTTTGGG---GG------------GAGCGCGTGTGT-AT-TTGGCACAAACGCTGCTCCTTCCACA-TCCCCTGCCGC----------------------------------------------------------------------------------------------------------GATGCTTGGCG--------GTA--CACGTTTC-----CGTAGC---------------------TC-TACTTA--------------CCT---TCTC---CT---CTCTT-------CTTGCAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

G-CATTGAATTTCGCTGGCAAATGCAG--ACTGAA--AG-TTAAAATAAACCGCATGGCATGGCACTTTT-G--T------TGTCTCGCCTAGGCGGCGA---CAAA-----TGTTGGAG---G-------------GTTTTTATATGT-AT-TTAGCATCAACGTTGCTCCCTTCATT-CCCCCGACCAC----------------------------------------------------------------------------------------------------------GATGCTTGGCG--------GTA--ACCATTTT-----TATTCC---------------------CTTTATTAA--------------CCT---CC-T---CC---CT--T-------ATTGTAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGAATTGAATTTCGCTGTCAATAGCAG--ACAG-----A-TTAAATGAAACCGCATGGCCCAGCAAATTTTGATC------CGTCGCACT--------GA---ATAA-----C-------------------------------------ATTTTGGC----CCGTTCCTCCTTCCACT-C-CCCGACAAA----------------------------------------------------------------------------------------------------------AATGCTTTCCC--------CTC--CTTCTTCG-----CCCACC---------------------TCTGGCTTA--------------CCT---CTTGCTTACCTTATT-T-------TTTTTAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAAATCAGCGACGCT.....................	20	1	32.00	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	5	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	5	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................ATC------CGTCGCACT--------GA---ATAA-----C-------------------------------------AC...............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAAATCAGCGACGCTATCT.................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGACCAAATCAGCGAC........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGACCAAATCAGCGACGC......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCGACCAAATCAGCGACGCTA....................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGTGCGACCAAATCAGCGA.........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATGTGCGACCAAATCAGCGACG.......................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAGCGACGCTATCTTGGATGCC.........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCGACCAAATCAGCGA.........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATCAGCGACGCTA....................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGCGACGCTATCTTGGATGCC.........	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAATCAGCGACGCT.....................	17	1	2.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAATCAGCGACGCTA....................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAATCAGCGACGCT.....................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAATCAGCGACGCTATCTTGGA.............	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATCTTGGATGCCCATCT....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCTATCTTGGATGCCCATC.....	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGACGCTATCTTGG..............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCGACGCTATCTTGGATGCCCATC.....	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAAATCAGCGA.........................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TTTGTAGACAAAATGTGCGACCAAATCAGCGACGCTATCTTGGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAAATCAGCGACGC......................	19	1	2.00	2	0	0	1	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCTTGGATGCCCATCTGA..	21	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGACGCTATCTTGGAT............	21	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCGACCAAATCAGCGAC........................	22	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCGACCAAATCAGC...........................	20	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAGCGACGCTATCTTGGA.............	22	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAAATCAGCGACGCTATC..................	21	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGACCAAATCAGCGACGC......................	23	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGACCAAATCAGCGACGCT.....................	22	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCAGCGACGCTATCTTGGATGCC.........	27	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACCAAATCAGCGACGCTA....................	22	1	1.00	1	1	0	0	0

droYak3

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TTTGTAGACAAAATGTGCGACCAGATCAGCGACGCAATCTTGGATGCCCATCTAAAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTGCGACCAGATCAGCGACGCAATCT.................	30	1	9.00	9	0	0	0	0	0	0	0	0	0	0	9
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCGACGCAATCTTGGATGCCCATCT....	30	1	9.00	9	0	0	0	0	0	0	0	0	0	0	9
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAGATCAGCGACGC......................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGATCAGCGACGCAAT...................	20	1	2.00	2	0	0	0	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCGACCAGATCAGCGA.........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGACCAGATCAGCGACGC......................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCGACGCAATCTTGGATG...........	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGCAATCTTGGATGCC.........	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAGATCAGCGACGCAATCTTGGATGC..........	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGACCAGATCAGCG..........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCGACCAGATCAGCGAC........................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACCAGATCAGCGACGCA.....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCTTGGATGCCCATCT....	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGCGACCAGATCAGCGACG.......................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAATGTGCGACCAGATCAGCGAC........................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------TTTGTAGACAAAATGTGCGACCAAATCAGCGACGCAATCTTGGATGCCCATCTGAAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGACGCAATCTTGGATGCCCA.......	26	1	2.00	2	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCAGCGACGCAATCTTGGATGCCC........	28	1	2.00	2	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTGCGACCAAATCAGCGACGC......................	26	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACCAAATCAGCGACGCA.....................	20	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCGACGCAATCTTGGATGCCC........	25	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCGACCAAATCAGCGACGCAATC..................	28	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAAAATGTGCGACCAA.................................	19	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................GACAAAATGTGCGACCAAAT...............................	20	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACCAAATCAGCGACGC......................	20	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGGATGCCCATCTGAA.	20	1	1.00	1	1	0	0	0	0	0	0

CCGTATCTTAAAGCGACAGTTAGCGTTTTACTTTTACTTTTATTTGACGAAACAGGCCGTTAAAATCGACCGCTCAGATGAGCCACGACGGTTTCACCGCAGCGCCACGGAAACAGACCCTTAAGCATATATGAATAGTGTATATATAAGATGTTTATGTATTGTCGTAGCCAACTAAATAATAAAATAGTATAAAAAATCTGTTTTACACGCTAGTTTAATCACTACGGTAGGATCTACGGGTAGATGCT ************************************************....(((((.......))))).(((((.((.((((((((.(((((..((......))..)))))....(((((..((((((.........)))))))))))............)))))))))).)))))......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060666 160_males_carcasses_total	V116 male body	SRR060671 9x160_males_carcasses_total	SRR060672 9x160_females_carcasses_total	SRR060684 140x9_0-2h_embryos_total	SRR060667 160_females_carcasses_total	SRR060668 160x9_males_carcasses_total	SRR060663 160_0-2h_embryos_total	SRR060682 9x140_0-2h_embryos_total	SRR060664 9_males_carcasses_total	SRR060687 9_0-2h_embryos_total	SRR060662 9x160_0-2h_embryos_total	SRR060669 160x9_females_carcasses_total	SRR060686 Argx9_0-2h_embryos_total	SRR060676 9xArg_ovaries_total	V047 embryo	SRR060665 9_females_carcasses_total	SRR060675 140x9_ovaries_total	M028 head	M061 embryo	SRR060661 160x9_0-2h_embryos_total	SRR060685 9xArg_0-2h_embryos_total	V053 head	SRR1106729 mixed whole adult body	SRR060677 Argx9_ovaries_total	SRR060681 Argx9_testes_total	SRR060679 140x9_testes_total	SRR060689 160x9_testes_total	SRR060659 Argentina_testes_total
..................................................................................................................................................................TGTGGTACCCAACTAAGTAATA...................................................................	22	3	1	40.00	40	12	6	4	2	1	1	0	2	1	2	1	2	1	1	1	1	0	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGGTACCCAACTAAGTAATA...................................................................	20	3	4	14.00	56	20	3	3	3	3	1	8	0	5	2	1	0	4	0	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0
..................................................................................................................................................................TGTGGTACCCAACTAAGTAAT....................................................................	21	3	1	8.00	8	1	2	0	1	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................TGTGGTACCCAACTAAGTAA.....................................................................	20	3	8	5.88	47	8	6	1	0	3	5	5	4	2	0	1	3	2	2	0	1	1	1	0	0	0	2	0	0	0	0	0	0	0
..................................................................................................................................................................TGTGGTACCCAACTAAGTAATAA..................................................................	23	3	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................GTGGTACCCAACTAAGTAATA...................................................................	21	3	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................ATGTCGTACCCAACTAAGTAAT....................................................................	22	3	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................ACCGCTCAGATGAGCCACGACG.................................................................................................................................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................TGTGGTACCCAACTAAGTA......................................................................	19	3	17	0.59	10	0	0	2	2	0	0	0	1	0	0	2	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TGAGGTAGGATCTACGGGAA......	20	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................ATAAGATGTTTATGTAT.........................................................................................	17	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................TGTGGTACAGGCTAGTTTA...............................	19	3	20	0.35	7	0	5	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..............................................................................................................AAACAGGTCCTTAAGCATGTA........................................................................................................................	21	3	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCTGATTTCCACGCTAGT..................................	18	2	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................TGGTACCCAACTAAGTAAT....................................................................	19	3	19	0.32	6	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................AACGCAGCGCAACGGAAAAAGA......................................................................................................................................	22	3	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................ACCCAACTAAATATTAAAAT...............................................................	20	2	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................GTGGTACCCAACTAAGTAA.....................................................................	19	3	14	0.14	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................ATAAAATAGTATTAAAAAT...................................................	19	1	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TGTAGTCCTAGCCAACTAA.........................................................................	19	3	19	0.11	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AGGCGACAGTGAGCGTGTTA.............................................................................................................................................................................................................................	20	3	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................TAAAATCGTATAAGAAATC..................................................	19	2	11	0.09	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AGCGACAGTTTGCGTGTT..............................................................................................................................................................................................................................	18	2	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................GTATTGTCGTAATCAACAAAA........................................................................	21	3	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................................................................................................................TGACATTTAAGCATATATGAAT...................................................................................................................	22	3	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................TGTTGTCCTAGCCAGCTAA.........................................................................	19	3	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GGTACCCAACTAAGTAATA...................................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................TGTTGTCGTGGCCAACTACA........................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dvi_21827

scaffold_13246:237007-237157 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-31.8	-31.5	-31.5