ID:

dvi_21812

 Coordinate:

scaffold_13052:734795-734945 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.0 -25.7 -25.6

Flybase annnotation

exon [dvir_GLEANR_126:3]; CDS [Dvir\GJ12646-cds]; intron [Dvir\GJ12646-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron+
mature
  1. scaffold_9623:17-40 +
  2. scaffold_9623:7232-7255 +
  3. scaffold_12723:1174682-1174705 +
  4. scaffold_12728:343991-344014 +
  5. scaffold_12736:392424-392447 +
  6. scaffold_12822:940096-940119 +
  7. scaffold_12855:1490471-1490494 +
  8. scaffold_12855:8227067-8227090 +
  9. scaffold_12954:271498-271521 +
  10. scaffold_12958:302015-302038 +
  11. scaffold_12958:1108047-1108070 +
  12. scaffold_12961:93243-93266 +
  13. scaffold_12970:590392-590415 +
  14. scaffold_12970:1182129-1182152 +
  15. scaffold_12970:5322293-5322316 +
  16. scaffold_13050:837434-837457 +
  17. scaffold_13050:1918655-1918678 +
  18. scaffold_13050:2352749-2352772 +
  19. dvi_21812  scaffold_13052:734879-734902 +
  20. scaffold_13152:5-28 +
  21. scaffold_12970:8980586-8980609 +
  22. scaffold_13049:22977597-22977620 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAGAAGTAAAAAAAGCCCAAGACTCAGCTGAAAAAATAAACAACGCAAATGTAAGTAATCACACAATATTTTATATATTTATTGTATGTACAAATATTCCGTATTTTAAAAACTATTTTTATTCTCGGAACCCATTGAAAATGGGTAAAAAGGGTATAATGTATATATTCAAACCTGCAGAAAGCAGCATCTTCGACTCCATAAAGTATATATATTCTTGATCACCATCAATAGCCAAGTCGGTCTAGCCA
**************************************************...(((.........(((((((((((((.....))))))).))))))((((.....((((((...))))))....))))(((((((...))))))).....(((((((.....)))))))....((((.....))))........)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 SRR060664
9_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 V047
embryo
 SRR060681
Argx9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060658
140_ovaries_total
 M027
male body		 SRR060672
9x160_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060662
9x160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR1106714
embryo_2-4h
 SRR1106720
embryo_8-10h
 V116
male body
.........AAAAAGCCCAAGACTCAGCT.............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............AGCCCAAGACTCAGCTGAAAAAATA..................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........AAAAAGCCCAAGACTCAGCTGAAA.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GACTCAGCTGAAAAAATA..................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AAAAAAAGCCCAAGACTCAGC............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AAAAAAAGCCCAAGACTCAGCT.............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....AGCAAAAAAAGCCCAAGACTC.................................................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AGAAGTAAAAAAAGCCCAAGA..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TATATTCTTGGTCACCATCAATAGCCAA............. 28 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................ATAAACAACGCCAGGGTAAGT................................................................................................................................................................................................... 21 3 5 0.40 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTGAAAATGGGTAAAAAGGGTATA............................................................................................. 24 0 20 0.30 6 0 0 0 0 0 0 0 1 1 0 0 0 2 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................TTGAAAATGGGTAAAAAGGGTA............................................................................................... 22 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................TTGAAAATGGGTAAAAAGG.................................................................................................. 19 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTGAAAATGGGTAAAAAGGGT................................................................................................ 21 0 20 0.10 2 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................ATCTTGGACTCCATA................................................ 15 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0
......................................................................................................................................TTGAAAATGGGTAAAAAGGGTATAATG.......................................................................................... 27 0 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTGAAAATGGGTAAAAAGGGTATAA............................................................................................ 25 0 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TATATTCTTGATCACCATCAATAG................. 24 0 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................GACCCAGCTGAAAAAAAAA.................................................................................................................................................................................................................... 19 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CAACATCTTCGACTCCATTG............................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CCCATTGAAAATGGGTAAAAAGGGT................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ATTGAAAATGGGTAAAAAGG.................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................TTGAAAATGGGTAAAAAGGGTATAAA........................................................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................ACCCATTGAAAATGGGTAAAAAGGGT................................................................................................ 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................TTGAAAATGGGTAAAAAGGGTAT.............................................................................................. 23 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AAAATGGGTAAAAAGGGTAT.............................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................TTGAAAATGGGTAAAAAG................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TTGAAAATGGGTAAAAAGGG................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATCTTCATTTTTTTCGGGTTCTGAGTCGACTTTTTTATTTGTTGCGTTTACATTCATTAGTGTGTTATAAAATATATAAATAACATACATGTTTATAAGGCATAAAATTTTTGATAAAAATAAGAGCCTTGGGTAACTTTTACCCATTTTTCCCATATTACATATATAAGTTTGGACGTCTTTCGTCGTAGAAGCTGAGGTATTTCATATATATAAGAACTAGTGGTAGTTATCGGTTCAGCCAGATCGGT
**************************************************...(((.........(((((((((((((.....))))))).))))))((((.....((((((...))))))....))))(((((((...))))))).....(((((((.....)))))))....((((.....))))........)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 SRR060684
140x9_0-2h_embryos_total
 SRR060655
9x160_testes_total
 V053
head
 SRR060679
140x9_testes_total
 SRR060664
9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 M047
female body
 SRR060668
160x9_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060658
140_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR1106729
mixed whole adult body
..........TGTTCGGGTTAGGAGTCGACTT........................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AAACAGAGCCTTGGGTAA................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAAGCTGAGGTATTTCATATATA...................................... 23 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GAGGTATTTCATATATATAAGAAC............................... 24 0 20 0.25 5 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........TTTTTTCCGGTTCGGAGGCGA.............................................................................................................................................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GAAGCTGAGGTATTTCATA.......................................... 19 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TGGTGGCAGTTATGGGTTC............ 19 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0
....................................................TTCATTAGCGTCTTATAAAA................................................................................................................................................................................... 20 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
ATCTTCATTTTTGCCGGGC........................................................................................................................................................................................................................................ 19 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATTTCATATATATAAGAACTAGTGGT........................ 26 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0
..................................................................AGAGAATATATAAATAACATA.................................................................................................................................................................... 21 2 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................AGTCGACATTTTTACTTGTCG............................................................................................................................................................................................................... 21 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CCCATTTTTCCCATATTACATA....................................................................................... 22 0 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGAGGTATTTCATATATATAAGAACT.............................. 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................TACCCATTTTTCCCATATTAC.......................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................GCTGAGGTATTTCATATATATAAGAAC............................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGAGGTATTTCATATATATAAGAAC............................... 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GAGGTATTTCATATATATAAGAACTAG............................ 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGAGGTATTTCATATATATAAGAA................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................TTTTACCCATTTTACCCATATTACAT........................................................................................ 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13052:734745-734995 + dvi_21812 TAGAAGTAAAAAAA-GCC-CAAG-------A-----CTCAGCTGA------------AAAAAT-----------------------------------A------------------------AACAAC----GCAAATGTAAGTAATCA---------------C--------------AC----------------------------------------------------------------------------------------------------------------------------AA--TA-TT---------------------TTATATATTTATTGTATGTACAAATATTCCGT---------------------------A----------------------T---------------------------------------------------------------------------------------------------------------TT-------------TA------------AAAACTATTTTTAT--------TCTCGGAACCCATT--GAAAATGGGTAAAAAGGGTATAATGTATAT-------------------ATTCA---------AACCTGCAGAAAGCAGCATCTTCGACTCCATAAAGTATATAT----ATTCTTGATCACCATCAATAGCCAAGTCGGTCTAGCCA
droMoj3 scaffold_6680:16371473-16371731 + GTAGTAAAA------ACG-TAAT-------T------------------ATAGAGG-------------------CAA---------------------TAAA--------------------TTCAGA----GTATGTAAGAGT-------------------------------------------------------------------------------------------------------A-------AGTAA---------------TA-----------------------TATATAATATATTT---------------------TTATATATTTATT---TATAT-------------------------------------------------------AATTT-----TATT------------------------------------------------ATTTT-------------------------------------------------------TCT-T-----TCT---------------GTTATTTTTAT--------ACCCTGAACCCATT--GAAAATGGGAAATCAGGGTATAATGGTTTT-------------------GTGAAAAAGTATGTAACGGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTATATAT----ATTCTTGATCAGCGCGACGAGCTGAGTTGATATAGCCC
droGri2 scaffold_15110:17154560-17154846 - AGAAGTGTACA--A--AA---A----------G--AAG-------------------------------------------ATGAAG---AAG--CA------GAGC-AACTTAATAAAGCCA--------------------------------------------------CA--------------------AA--GATATGT---------------GCAA-------------------------------AGAAA---------------TG-----------------------TATA-------------------------------------------------------TTATATATATATATATATATTTGGGAGTGTTATC------------------AATTT-----AGTT------------------------------------------------CGC-------------------------------------------------------TTTTGC------TTT---------------GCCTTTTTTAT--------ACCCTGAACCCATT--GAAAATGGATAAAAAGGGTATAATGTAAT----------ATAATAAT-TGTGCAAATGTATGTAACAGACAGAAGGAAGCATCTCTGACTCCATAAAGTACATGC----ACTCGAGATCACGATTAACAGCCGAGTCGATATAGCGA
droWil2 scf2_1100000004909:8166931-8167181 - AAATAAAAAAA----TTC-CTAA-------AAA------------------------------------------CAA---------------AAAAAA------------------------AACTGT----G-----------------------------------------------------------------------------------------------------------GAAAAATGCGTGCAAA-------------------TACCGT-------------------TAC--AA--TA--------------------TTGCTTAGAAATTTGTTG------------------------------------------GA------------------AATTA-----AATT------------------------------------------------AAATT------------TCGT-----------------------------------TA------------TTG---------------GCACTTTTTAT--------ACCATACACCCATC--GG-------GTGAAATGGTATATTAAAGTC-------------------GCCAAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATAT----ATTCTTGATCAGGATCAAAAACCGAGTCGATCTAGCCA
dp5 2:18266937-18267159 + CAATGGTTAAAACA-GCC-AAA--------------ATTGCTTGT------------AAGAAT-----------------------------------A------------------------AATATC----GTCGATGTTAAAAAACACATGGCTGC------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------TTCTTTTTACTGTAATGTGTA-----------------------------------------AATCATAGAATTTGTAT--------AGCCGATACTCAAAA-TG-------GTAAAAG------------------------------------TGGATGTGTGTAACGCCCAGAAGGAAGCGTTTCCGACCTCATAAAGTATATAT----ATTCTTGATCAGCATCAATAGTCGAGTCGATTGAGCCC
droPer2 scaffold_5:2150885-2151092 - dpe_1754 TAAAAGTAAGAAAA-GCT-CGAA-------AAA------------------------------------------CAG------------AGG--TT------TTAT-A------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACATGCG--ATTTCATTGTTATATTTTT-AC--------------------------------------------------------------AT---------------------------T----------------------T---------------------------------------------------------------------------------------------------------------TT-------------TA---------------AATATTATTGT--------ACCCGATACTCTAAATGA---------GTTTGGGTAAAA----------------------------ATGGATGTGTGTAACGTCCAGAAGGAATCATTTCCGACCCCATAAAGTGTATAT----ATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGTCA
droAna3 scaffold_12943:4095847-4096130 - AAATGCGATAA--TAACG-GAAGACTCAGAAAACAAATA-----------------T-------------------------------------------------------------------------------------------------------------------------------------------------ATTT-------------ATAAATAAAAACCTAAAGTGAGCACACTTCCATACAGA-AAATATTTATTCAGTACATG-G--ATTTTAC---------------------------------------------------------------------------------------------------------------------------CATTTAATTTT---A---------------------CCATTAAT---------------------------------------------------------------------------T----T-TACCATTCCCATTCCACGGGAAAGGGGTTTTTTAT--------ACCCTT-------G-------------CAGAGGGTATTATAATTTT-------------------GGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATAT----ATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCA
droBip1 scf7180000391810:415-653 + TAAAAAGAAAAAAA-GAC-CAA------------------ATT-------------T----------------------------------A-TGGATAAATAAAACAGATTTAT-TAAAATA--------------------------------------------------AAATTTTACAAATTGGAATTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTATACAAATTATACATACATATATACA-----------------------------------------------------------------------------------------------------T-------------------------------------------------TT------------------------------TTAATTTTTAT--------ACCCTT-------G--C-----------AGAGGGTATTATAATTTT-------------------GGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCATATAAAGTATATAT----ATTCTTGATCAGCATCACCTCCTGAGTTGATATGAGCA
droKik1 scf7180000302408:281947-282188 - AAATAAATAGA--G--AA---A----------AAAAATAGATTAT------------A---------------------------------A-TAGGTAAAT----A----------------AATAATATTTAAA-TAATTAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AA--CA-ATTTAATAACATTTAAATAATATTTAAAATAATGTAG------------------------------------------CAGA------------------TCT-----AA-------------------------------------------------------------------------------------------------------------------------T----------------TGACTTTTTAT--------ACCCTT-------G---------------CAGGGTATTATAATTTC-------------------AGTCAGAAGTTTACAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATAT----ATTCTTGATCAGCATCAACAGCCAAGTCGATCTAGCCA
droFic1 scf7180000451474:14942-15182 - TAAATGGAA-------CC-CAA---------------CCAGTT------------------------------------------------A-TGAATAAAT---------------------AAAAAT----GCCAATGAAAAAATTC---------------------------------------GAATTTAACTTT--GTCG-------------TTGCATGACGG----------------------------------------------------------------------------------------------------------------------------CACA---A--------------------------------------------------------------------------------------------------------------GTC---CATTTTAAAAATTTGG---------------------------------------------------TT---------------GTTATTTTTAT--------ACCCTT-----GCA--GA-------GCA-AAGGGTATTATAATTTC-------------------AGTCAGAAGTTTGCCATGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATAT----ATTCTTGATCAGCATCACAATCTGAATCGAAATATGTA
droEle1 scf7180000491215:614426-614677 + TAAAAATAAATATG-AAT-AAA--------------ATC----ATAATTTTAAATA-------------------CAACACATAT--------------------------------------------------------TA--A--------------ATTACAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTTAATATT---AAAATGTTGAACTTATGGGAAAATATTAACT------TTAAAATAGTTCCT-------------------------------------------------------ATTTGA------TTT---------------AAATTCATTAT--------ACCCTT-------G--C-----------AGAGGGTATTATAATTTC-------------------AGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATAT----ATTCTTGTTCAGCATCACTAGGAGAGTCGATCTAGACA
droRho1 scf7180000763316:715-970 + AGTCAAAGAAA-----TA---AA------------AATCAGTTAC-----CAAATTG--------------------------------------------------------------------------------------AACAATACATTGATGAAAATCTATCAAATAAAATTGAAGAATCCTGCGTTTATTTGA------TATATATCAATATCTGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAA---------------------------------------------------TC---------------GTTATTTTTAT--------ACCCGTTACTCGTA--GA-------GTAAAAGGGTATATTGTATTC-------------------GT-GCAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATAT----ATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCA
droBia1 scf7180000301256:24878-25129 - AAGGAAAAAGA----ATC-A---------------AATGAATTTT-----CAAATGTAAC-------------------------------------------AATC----------------AATAATGTG---TTAAAAAAGTAATCT---------------A--------------ACA----------------------------------------------------------------------AAGT-ATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCTACATTTCCAAAAAAATTC---TTCT------------------------------------------------TT-------------TT---------------AATTTTTTTAG--------ACCCGTTACTCGTA--GA-------GTAAAAGGGTATACTAGATTC-------------------GTCAGAAAGTATGTAACAGGTTAAAGAAAACGTTTCCGACCCCATAAAGTATACATATAT-TGGTTGATCGGGATCACTAGCCGAGTCGATCTAGCCT
droTak1 scf7180000413944:13480-13745 - AAAAATAATAA--A-ATCGATTT----------------------------AAATA-------------------GAGAAAATAT--TTT-------------AAAC----------------AATGATTTA---GATGATAAGTAATAA---------------T--------------AAA----------------------------------------------------------------------AAGT-ATTAATATATTAAGTAAT------------------------------------------------------------------------------TAGAAATA--------------------------------------------------------------------------------------------------------------GTC---TAATTTAAACATAAGG---------------------------------------------------TT------------AAAAGTGTATTTAT--------ACCCGTTACTCGTA--GA-------GTAAAAGGGTATATTAGATTC-------------------GTGCAAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCACATAAAGTATATAT----ATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCCA
droEug1 scf7180000409561:38491-38737 + TACAAATTTAAAAA-ACA-CGAA-------AGT------------------------------------------CAA---------------AAAATGAAAAAAA-----------------AAGAGT----GCATAAGTAAAAAATT------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------A------------------------------------------AAGATCTGGTTACTCTACATCTTTTCATTTT-----------------------------------------------------TTA-------------------------------------------------------CTT-T-----TGC---------------ACTCTTTTTAT--------ACCCGTTACTCGTA--GA-------GTAAAAGGGTATACTAGATTC-------------------GTTGAAAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATATAT----ATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCA
dm3 chr4:643043-643287 - TTGAATTAACA----ATT-T--------------------GATGT------------AAAATTAAAATACAAAAACAAAATAAAAAA----------------------------------------------------------A----------------------------------AC-----TACATCTAAATAT--ATTT-------------TTGAAAATAAACT---------------------------------------------------------------------TAC-------------------------------------------------------------ATT---------------------------A----------------------T---------------------------------------------------------------------------------------------------------------TT-------------TT---------------AACATTCTTATCCTTATATA----------------------------GACGAAGTTATAAATTAAGACGCAAGACAAAGGTATGTATGTTCGTATGTAACAGGCAAATGGAAACGTTTCCGACCACATAAATTATATAT----ATTCCTGATCAGGATCAATAGCCCAGTCGATCTAGCCA
droSim2 3l:17795807-17796050 + AATTAAGGAAA--CAACA---AG------------AACGAGTTTA------------TAAAAC---------------------------AAG--AA------AATC-AATATAA-AAAGCCA--------------------------------------------------AGAA--------------AATAAA--------------------------------------------GATG---------------------------------------------------------------------------------------------------------CTTGCGCAAACACTCTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------AACGCTTTC---------------CT-AA------------TAAGTTTTTAT--------ACGCGTTACTCGTA--GA-------GTA-AAGGGTATACTGGATTC-------------------GTTGAAAAATATGTAACAGGTAGAAGGAAGACTTTCCGACCATATAAAATATATAT----ATTCTTGATCAGGGACAATAGCCAAGTCGAAATAGCCA
droSec2 scaffold_8:3598466-3598690 + AGCATTAAAAA--AAACC-TAAT-------T----------------------------------------------------GTTA----A-AGGACAGACA--------------------ATGAAG----GTATATTGAAGTATTTT---------------T----------------------------------------------------------------------------------------------------------------------------------------AC--A----------------------------------------------------------------------------------------------------------CTTT-----TTTT------------------------------------------------TAA-------------------------------------------------------TTGCAT------GCT---------------CCTTTTTTTAT--------ACCCGCTACTTTTA--GA-------GTAAAAGGGTATACTAGATTC-------------------GTTGAAAAGTATGTAACAGGGAGAAGGAAGCGTTTACGACTATATAAAGTATACAT----ATTCTTAATCAGGTTCAATAGCCGAGTCGATCTAGCCA
droYak3 v2_chrUn_515:5-244 - AATATGATAGA------C-CAAC------------------TA-------------A----------------------------------A-CAGGTAAAT----A-------A-AAA----ATCAAT----GCA--------------------------------------------------------------------------------------------------------------------------------------------TACTTT-------------------TAT--TA--TA--------------------T------------------------------TCTTT---------------------------A----------------------TTTTA---A---------------------ACAATAAT-----------------TAT------------------------------------------------------TA------------TTAAATATGATAAGACAAACACTTTTTAT--------ACCCGTTACTCGAA--GA-------GT---GGGGTATACTAAATTA-------------------TGT---AAGTATGTAACAGGCAGAAGGAAACGTTTCCGACCATATAAAGTATATGTATATATTCTTGATCAGTATCAATAGCCAAGTCGATCTGGCCA
droEre2 scaffold_4820:1732902-1733128 + TAAAAGAGAAA--A-ACC-AAAG----------------------------------------------------------AAAAAA---AAG--AA------CAAC-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAGTAATATAATATGTAATGGTTAAAAATTTC---------------CC-ATTAAAC--CAAAGGAGCTTTTTAT--------TCCCGTTACTCGTA--GA-------GTAAAAGGGTATACAAGGTTC-------------------GTTGAAAAGTATGTAACAGGCAGAAGGTAGCGTTTCCGACCATATAAAGTATATAT----ATTCTTGATCAGGATCAATAACCGAGTCGAACTGGCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TAGAAGTAAAAAAA-GCC-CAAG-------A-----CTCAGCTGA------------AAAAAT-----------------------------------A------------------------AACAAC----GCAAATGTAAGTAATCA---------------C--------------AC----------------------------------------------------------------------------------------------------------------------------AA--TA-TT---------------------TTATATATTTATTGTATGTACAAATATTCCGT---------------------------A----------------------T---------------------------------------------------------------------------------------------------------------TT-------------TA------------AAAACTATTTTTAT--------TCTCGGAACCCATT--GAAAATGGGTAAAAAGGGTATAATGTATAT-------------------ATTCA---------AACCTGCAGAAAGCAGCATCTTCGACTCCATAAAGTATATAT----ATTCTTGATCACCATCAATAGCCAAGTCGGTCTAGCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........AAAAA-GCC-CAAG-------A-----CTCAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
.............A-GCC-CAAG-------A-----CTCAGCTGA------------AAAAAT-----------------------------------A------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........AAAAA-GCC-CAAG-------A-----CTCAGCTGA------------AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
......................G-------A-----CTCAGCTGA------------AAAAAT-----------------------------------A------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
.......AAAAAAA-GCC-CAAG-------A-----CTCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.......AAAAAAA-GCC-CAAG-------A-----CTCAGCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.AGAAGTAAAAAAA-GCC-CAAG-------A-----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GAAAATGGGTAAAAAGGGTATA.............................................................................................................................24200.306000000001000000000000000010012000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GAAAATGGGTAAAAAGGGTA...............................................................................................................................22200.102000000000000000000000000000100000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GAAAATGGGTAAAAAGG..................................................................................................................................19200.102000000000000000000000000020000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GAAAATGGGTAAAAAGGGT................................................................................................................................21200.102000000001000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GAAAATGGGTAAAAAGGGTATAATG..........................................................................................................................27110.091001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GAAAATGGGTAAAAAGGGTATAA............................................................................................................................25130.081000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----ATTCTTGATCACCATCAATAG.................24140.071000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATT--GAAAATGGGTAAAAAGGGT................................................................................................................................25200.051000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--GAAAATGGGTAAAAAGG..................................................................................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GAAAATGGGTAAAAAGGGTATAAA...........................................................................................................................26200.051000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCATT--GAAAATGGGTAAAAAGGGT................................................................................................................................26200.051000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GAAAATGGGTAAAAAGGGTAT..............................................................................................................................23200.051000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGGTAAAAAGGGTAT..............................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GAAAATGGGTAAAAAG...................................................................................................................................18200.051000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--GAAAATGGGTAAAAAGGG.................................................................................................................................20200.051000000001000000000000000000000000000000000000000000000000000000
droMoj3
GTAGTAAAA------ACG-TAAT-------T------------------ATAGAGG-------------------CAA---------------------TAAA--------------------TTCAGA----GTATGTAAGAGT-------------------------------------------------------------------------------------------------------A-------AGTAA---------------TA-----------------------TATATAATATATTT---------------------TTATATATTTATT---TATAT-------------------------------------------------------AATTT-----TATT------------------------------------------------ATTTT-------------------------------------------------------TCT-T-----TCT---------------GTTATTTTTAT--------ACCCTGAACCCATT--GAAAATGGGAAATCAGGGTATAATGGTTTT-------------------GTGAAAAAGTATGTAACGGGCAGAAGGAGGCGTGGCAGACCCCATAAAGTATATAT----ATTCTTGATCAGCGCGACGAGCTGAGTTGATATAGCCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATAATGGTTTT-------------------G.................................................................................................262013.8527727700000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATAATGGTTT......................................................................................................................242013.7527527500000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GAAAATGGGAAATCAGGGTA...............................................................................................................................21200.408701000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----ATTCTTGATCAGCGCGACGA..................21200.102000002
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAATCAGGGTATAATGGTT.......................................................................................................................23200.102002000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGGCAGACCCCATAAAGTATATAT----......................................27200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGGGCAGAAGGAGGCG..................................................................19200.051000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCGCGACGAGCTGAGTTG.........21200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT----ATTCTTGATCAGCGCGACGAGCTG..............28200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCGCGACGAGC................18200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------------GTGAAAAAGTATGTAACGGG..............................................................................22200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCGCGACGAGC................20200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATAATGGTTTT-------------------GTGAAAAAGTATGT....................................................................................28200.051000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT-------------------GTGAAAAAGTATGTAACGGGC.............................................................................25200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCGCGACG...................19200.051100000
droGri2
AGAAGTGTACA--A--AA---A----------G--AAG-------------------------------------------ATGAAG---AAG--CA------GAGC-AACTTAATAAAGCCA--------------------------------------------------CA--------------------AA--GATATGT---------------GCAA-------------------------------AGAAA---------------TG-----------------------TATA-------------------------------------------------------TTATATATATATATATATATTTGGGAGTGTTATC------------------AATTT-----AGTT------------------------------------------------CGC-------------------------------------------------------TTTTGC------TTT---------------GCCTTTTTTAT--------ACCCTGAACCCATT--GAAAATGGATAAAAAGGGTATAATGTAAT----------ATAATAAT-TGTGCAAATGTATGTAACAGACAGAAGGAAGCATCTCTGACTCCATAAAGTACATGC----ACTCGAGATCACGATTAACAGCCGAGTCGATATAGCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAATAAAAAAA----TTC-CTAA-------AAA------------------------------------------CAA---------------AAAAAA------------------------AACTGT----G-----------------------------------------------------------------------------------------------------------GAAAAATGCGTGCAAA-------------------TACCGT-------------------TAC--AA--TA--------------------TTGCTTAGAAATTTGTTG------------------------------------------GA------------------AATTA-----AATT------------------------------------------------AAATT------------TCGT-----------------------------------TA------------TTG---------------GCACTTTTTAT--------ACCATACACCCATC--GG-------GTGAAATGGTATATTAAAGTC-------------------GCCAAAATGTATGTAACAGGCAGAAGGAAGCATCTCCGACCCCACAAAGTATATAT----ATTCTTGATCAGGATCAAAAACCGAGTCGATCTAGCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCATCTC..............................................................25201.2024000240
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAAGTC-------------------GCCAAAATGTATGTAA..................................................................................27200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAAAGTC-------------------GCCAAAATGTATGTA...................................................................................26200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAGTC-------------------GCCAAAATGT........................................................................................19200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCTCCGACCCCACAAAG.................................................21200.05101000
dp5
CAATGGTTAAAACA-GCC-AAA--------------ATTGCTTGT------------AAGAAT-----------------------------------A------------------------AATATC----GTCGATGTTAAAAAACACATGGCTGC------------------------------------------------------------------------------------------------------------------------------------------------C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------TTCTTTTTACTGTAATGTGTA-----------------------------------------AATCATAGAATTTGTAT--------AGCCGATACTCAAAA-TG-------GTAAAAG------------------------------------TGGATGTGTGTAACGCCCAGAAGGAAGCGTTTCCGACCTCATAAAGTATATAT----ATTCTTGATCAGCATCAATAGTCGAGTCGATTGAGCCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCGAGT...........23201.202402300000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCGAG............22200.80160900010420
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----ATTCTTGATCAGCATCA.....................20200.3060600000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------TGGATGTGTGTAACGCCCA............................................................................21200.2550500000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAG------------------------------------TGGATGTGTGTA...................................................................................19200.2550000002300
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTGTGTAACGCCCAGA..........................................................................21200.2040400000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGCCCAGAAGGA......................................................................21200.2040400000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCGA.............21200.2040400000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCGAGTCG.........25180.1730200000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAT----ATTCTTGATCAGCATC......................21200.1530003000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAG------------------------------------TGGATGTGTGTAA..................................................................................20200.1530000003000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG------------------------------------TGGATGTGTGTAACGC...............................................................................21140.1420000001010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGTCGAGTCGATTG.....25140.1420000000200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGTCGAGTCGATTG.....21150.1320000000020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCGAGTCGAT.......27170.1220100001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCGAGTCGA........26180.1120200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------TGGATGTGTGTAACGCC..............................................................................19200.1021100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCGAGTCGATT......28100.1010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAAGCGTTTCCGACC.........................................................22200.1020110000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCGAGTC..........24200.1020200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTAACGCCCAGAAGG.......................................................................20200.1020200000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGTCGAG............23200.1020000000020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----ATTCTTGATCAGCATCAATAG.................24200.1020000000020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------TGGATGTGTGTAACGCCC.............................................................................20200.1020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAG------------------------------------TGGATGTGTGTAACGC...............................................................................22140.0710100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATAGTCGAGTCGATT......21150.0710100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTCGAGTCGATTGAGCC.20150.0710100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGTCGAGTCGATT......20150.0710100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGTCGAGTCGATTGA....20150.0710000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG------------------------------------TGGATGTGTGTAACGCC..............................................................................21200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGTCGAGTCGA........22200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAAGGAAGCGTTTCCGACC.........................................................23200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGCCCAGAAGG.......................................................................21200.0510000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGTCG..............20200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG------------------------------------TGGATGTGTGTAACGC...............................................................................20200.0510000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------TGGATGTGTGTAACGCCCA............................................................................20200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTAACGCCCAGAAGG.......................................................................19200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGTCGAG............21200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------------------TGGATGTGTGTAACGC...............................................................................17200.0510000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGCCCAGAAGGA......................................................................22200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATAT----ATTCTTGATCAGCATC......................24200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTGTGTAACGCCCA............................................................................19200.0510010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATATAT----ATTCTTGATCAGCAT.......................26200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----ATTCTTGATCAGCATCAATAGT................24200.0510000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAATAGTCGAGTCGAT.......21200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATGTGTGTAACGCCCAGAA.........................................................................22200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG------------------------------------TGGATGTGTGTAACGCCC.............................................................................22200.0510100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------TGGATGTGTGTAACGC...............................................................................18200.0510000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGTCGAGTCG.........21200.0510100000000
droPer2
TAAAAGTAAGAAAA-GCT-CGAA-------AAA------------------------------------------CAG------------AGG--TT------TTAT-A------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACATGCG--ATTTCATTGTTATATTTTT-AC--------------------------------------------------------------AT---------------------------T----------------------T---------------------------------------------------------------------------------------------------------------TT-------------TA---------------AATATTATTGT--------ACCCGATACTCTAAATGA---------GTTTGGGTAAAA----------------------------ATGGATGTGTGTAACGTCCAGAAGGAATCATTTCCGACCCCATAAAGTGTATAT----ATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGTCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAG............25200.102020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGAGTCA21200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGAGT..19200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCATAAAGTGTATAT----AT....................................19200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGACCCCATAAAGTGTATAT----A.....................................24200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTGAGTA.21200.051000001
droAna3
AAATGCGATAA--TAACG-GAAGACTCAGAAAACAAATA-----------------T-------------------------------------------------------------------------------------------------------------------------------------------------ATTT-------------ATAAATAAAAACCTAAAGTGAGCACACTTCCATACAGA-AAATATTTATTCAGTACATG-G--ATTTTAC---------------------------------------------------------------------------------------------------------------------------CATTTAATTTT---A---------------------CCATTAAT---------------------------------------------------------------------------T----T-TACCATTCCCATTCCACGGGAAAGGGGTTTTTTAT--------ACCCTT-------G-------------CAGAGGGTATTATAATTTT-------------------GGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATAT----ATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------------GGTCAAAAGTGTGCAACGC...............................................................................21200.459900000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAATTTT-------------------GGTCAAAAGTGTGCAACG................................................................................27200.255000005
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGTGCAACGCAGTGAAGGAGAC...................................................................26200.102000002
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCAGTGAAGGA......................................................................20200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTT-------------------GGTCAAAAGTGTGCA...................................................................................22200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTT-------------------GGTCAAAAGTGTGCAA..................................................................................22200.051001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATATAT----ATTCTTGATCAGGAT.......................26200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----ATTCTTGATCAGGAT.......................21200.051001000
droBip1
TAAAAAGAAAAAAA-GAC-CAA------------------ATT-------------T----------------------------------A-TGGATAAATAAAACAGATTTAT-TAAAATA--------------------------------------------------AAATTTTACAAATTGGAATTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTATACAAATTATACATACATATATACA-----------------------------------------------------------------------------------------------------T-------------------------------------------------TT------------------------------TTAATTTTTAT--------ACCCTT-------G--C-----------AGAGGGTATTATAATTTT-------------------GGTCAAAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCATATAAAGTATATAT----ATTCTTGATCAGCATCACCTCCTGAGTTGATATGAGCASizeHit CountTotal NormTotal
No Reads
droKik1
AAATAAATAGA--G--AA---A----------AAAAATAGATTAT------------A---------------------------------A-TAGGTAAAT----A----------------AATAATATTTAAA-TAATTAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------AA--CA-ATTTAATAACATTTAAATAATATTTAAAATAATGTAG------------------------------------------CAGA------------------TCT-----AA-------------------------------------------------------------------------------------------------------------------------T----------------TGACTTTTTAT--------ACCCTT-------G---------------CAGGGTATTATAATTTC-------------------AGTCAGAAGTTTACAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATAT----ATTCTTGATCAGCATCAACAGCCAAGTCGATCTAGCCASizeHit CountTotal NormTotal
No Reads
droFic1
TAAATGGAA-------CC-CAA---------------CCAGTT------------------------------------------------A-TGAATAAAT---------------------AAAAAT----GCCAATGAAAAAATTC---------------------------------------GAATTTAACTTT--GTCG-------------TTGCATGACGG----------------------------------------------------------------------------------------------------------------------------CACA---A--------------------------------------------------------------------------------------------------------------GTC---CATTTTAAAAATTTGG---------------------------------------------------TT---------------GTTATTTTTAT--------ACCCTT-----GCA--GA-------GCA-AAGGGTATTATAATTTC-------------------AGTCAGAAGTTTGCCATGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATAT----ATTCTTGATCAGCATCACAATCTGAATCGAAATATGTASizeHit CountTotal NormTotal
No Reads
droEle1
TAAAAATAAATATG-AAT-AAA--------------ATC----ATAATTTTAAATA-------------------CAACACATAT--------------------------------------------------------TA--A--------------ATTACAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTTAATATT---AAAATGTTGAACTTATGGGAAAATATTAACT------TTAAAATAGTTCCT-------------------------------------------------------ATTTGA------TTT---------------AAATTCATTAT--------ACCCTT-------G--C-----------AGAGGGTATTATAATTTC-------------------AGTCAGAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTATATAT----ATTCTTGTTCAGCATCACTAGGAGAGTCGATCTAGACASizeHit CountTotal NormTotal
No Reads
droRho1
AGTCAAAGAAA-----TA---AA------------AATCAGTTAC-----CAAATTG--------------------------------------------------------------------------------------AACAATACATTGATGAAAATCTATCAAATAAAATTGAAGAATCCTGCGTTTATTTGA------TATATATCAATATCTGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAA---------------------------------------------------TC---------------GTTATTTTTAT--------ACCCGTTACTCGTA--GA-------GTAAAAGGGTATATTGTATTC-------------------GT-GCAAAGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATAT----ATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCASizeHit CountTotal NormTotal
No Reads
droBia1
AAGGAAAAAGA----ATC-A---------------AATGAATTTT-----CAAATGTAAC-------------------------------------------AATC----------------AATAATGTG---TTAAAAAAGTAATCT---------------A--------------ACA----------------------------------------------------------------------AAGT-ATTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCTACATTTCCAAAAAAATTC---TTCT------------------------------------------------TT-------------TT---------------AATTTTTTTAG--------ACCCGTTACTCGTA--GA-------GTAAAAGGGTATACTAGATTC-------------------GTCAGAAAGTATGTAACAGGTTAAAGAAAACGTTTCCGACCCCATAAAGTATACATATAT-TGGTTGATCGGGATCACTAGCCGAGTCGATCTAGCCTSizeHit CountTotal NormTotal
No Reads
droTak1
AAAAATAATAA--A-ATCGATTT----------------------------AAATA-------------------GAGAAAATAT--TTT-------------AAAC----------------AATGATTTA---GATGATAAGTAATAA---------------T--------------AAA----------------------------------------------------------------------AAGT-ATTAATATATTAAGTAAT------------------------------------------------------------------------------TAGAAATA--------------------------------------------------------------------------------------------------------------GTC---TAATTTAAACATAAGG---------------------------------------------------TT------------AAAAGTGTATTTAT--------ACCCGTTACTCGTA--GA-------GTAAAAGGGTATATTAGATTC-------------------GTGCAAAAGTATGTAACAGGTAGAAGGAAGCGTTTCCGACCACATAAAGTATATAT----ATTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCCASizeHit CountTotal NormTotal
No Reads
droEug1
TACAAATTTAAAAA-ACA-CGAA-------AGT------------------------------------------CAA---------------AAAATGAAAAAAA-----------------AAGAGT----GCATAAGTAAAAAATT------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------A------------------------------------------AAGATCTGGTTACTCTACATCTTTTCATTTT-----------------------------------------------------TTA-------------------------------------------------------CTT-T-----TGC---------------ACTCTTTTTAT--------ACCCGTTACTCGTA--GA-------GTAAAAGGGTATACTAGATTC-------------------GTTGAAAAGTATGTAACAGATAGAAGGAAGCTTTTGCGACCCTATAAAGTATATAT----ATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCASizeHit CountTotal NormTotal
No Reads
dm3
TTGAATTAACA----ATT-T--------------------GATGT------------AAAATTAAAATACAAAAACAAAATAAAAAA----------------------------------------------------------A----------------------------------AC-----TACATCTAAATAT--ATTT-------------TTGAAAATAAACT---------------------------------------------------------------------TAC-------------------------------------------------------------ATT---------------------------A----------------------T---------------------------------------------------------------------------------------------------------------TT-------------TT---------------AACATTCTTATCCTTATATA----------------------------GACGAAGTTATAAATTAAGACGCAAGACAAAGGTATGTATGTTCGTATGTAACAGGCAAATGGAAACGTTTCCGACCACATAAATTATATAT----ATTCCTGATCAGGATCAATAGCCCAGTCGATCTAGCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------------------------------------------------------------TT-------------TT---------------AACATTCTTATCCTTATATA----------------------------......................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCCAGTCGATCTAGCG.2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTATGTAACAGGCAAATGG.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAGACGCAAGACAAAGG.....................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATA----------------------------GACGAAGTTATAAATTAAGA..................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----ATTCCTGATCAGGATCAATAGCCCA.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCCAGTC..........2170.5740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCCAGTCGATCTAGCC.2720.5010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCAGGATCAATAGCCCAGT...........2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGATCAGGATCAATAGCC...............2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCAATAGCCCAGTCGATC......2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCCAGTCGA........2060.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCCAGTCGA........2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCCAGTCGA........2560.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCCAGTCG.........2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCCAG............2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----ATTCCTGATCAGGATCAAT...................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCCAGT...........1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTATGTAACAGGGTG...........................................................................19130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......TAACA----ATT-T--------------------GATGT------------AAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
droSim2
AATTAAGGAAA--CAACA---AG------------AACGAGTTTA------------TAAAAC---------------------------AAG--AA------AATC-AATATAA-AAAGCCA--------------------------------------------------AGAA--------------AATAAA--------------------------------------------GATG---------------------------------------------------------------------------------------------------------CTTGCGCAAACACTCTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------AACGCTTTC---------------CT-AA------------TAAGTTTTTAT--------ACGCGTTACTCGTA--GA-------GTA-AAGGGTATACTGGATTC-------------------GTTGAAAAATATGTAACAGGTAGAAGGAAGACTTTCCGACCATATAAAATATATAT----ATTCTTGATCAGGGACAATAGCCAAGTCGAAATAGCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAATATGTAACAGGTA............................................................................2545.2521000000413220000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGACTT................................................................2514.00400000001002010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAATATGTAACAGGT.............................................................................2443.001200000024402000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATAT----ATTCTTGATCAGGGACAA....................2613.00300000002001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATATGTAACAGGTAGAAGGAAGA...................................................................2712.00200000000000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT----ATTCTTGATCAGGGACAATAGC................2512.00200000001001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA--GA-------GTA-AAGGGTATACTGGAAA......................................................................................................................2611.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----ATTCTTGATCAGGGA.......................2111.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTGGATTC-------------------GTTGAAAAATATGTA...................................................................................2711.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGACAATAGCCAAGTCGAAATAG...2511.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTA--GA-------GTA-AAGGGTATACTGGA........................................................................................................................2411.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGGACAATAGCCAAGTCGAAA......2711.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATATAT----ATTCTTGATCAGGGACA.....................2711.00100000001000000000
.ATTAAGGAAA--CAACA---AG------------AACGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAT----ATTCTTGATCAGGGACAATAGC................2711.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGACAATAGCCAAGTCGAAATAGC..2611.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGACAATAGCCAAGTCGAAA......2611.00100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATATAT----ATTCTTGATCAGGGA.......................2511.00100000010000000000
...TAAGGAAA--CAACA---AG------------AACGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGACT.................................................................2411.00100000000010000000
...TAAGGAAA--CAACA---AG------------AACGAGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................CGCAAACACTCTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------AACGC..........................................................................................................................................................................................................................2011.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTTTTAT--------ACGCGTTACTCGTA--GA-------GT........................................................................................................................................2911.00100000000010000000
..............................................................................................................TATAA-AAAGCCA--------------------------------------------------AGAA--------------AATAAA--------------------------------------------GATG---------------------------------------------------------------------------------------------------------CT........................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTAGAAGGAAGACTTTC..............................................................1911.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAT----ATTCTTGATCAGGGACA.....................2311.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGGACAATAGCCAAGT...........2511.00100000000100000000
................................................................................................................................................................................................................................................................................................................................................................TGCGCAAACACTCTGTT--------------------------------------------------------------------------------------------------------------------------------------------------------AACG...........................................................................................................................................................................................................................2111.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATATATAT----ATTCTTGATCAGGGA.......................2711.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAATATGTAACAGGTAGAAGGA......................................................................2670.86600000001210020000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAATATGTAACAGGTAG...........................................................................2640.75300000300000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAATATGTAACAGGTAGAAGGAA.....................................................................2770.57400000002000020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------GTTGAAAAATATGTAACAGGTA............................................................................2440.50200000002000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------GTTGAAAAATATGTAACAGGT.............................................................................2340.50200000000000020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATATGTAACAGGTAGAAGGAAG....................................................................2650.40200000000000011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAG....................................................................21200.35700000000040030000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAATATGTAACAGG..............................................................................2370.29200020000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------GTTGAAAAATATGTAACAGGTAGAAGGA......................................................................3040.25100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAATATGTAACAGGTAGA..........................................................................2740.25100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAG........................................................................17200.25500000000005000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAATATGTA...................................................................................1890.22200000000002000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAATATGT....................................................................................17100.20200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAATATGTAACAGGTAGAAGGAAG....................................................................2850.20100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGG.......................................................................18200.20400000000004000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-AAGGGTATACTGGA........................................................................................................................1650.20100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATATGTAACAGGTAGAAGGAAGT...................................................................2750.20100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAATATG.....................................................................................16110.18200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTGGATTC-------------------GTTG..............................................................................................1960.17100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTGGATTC-------------------GTTGAAA...........................................................................................2060.17100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTGGATTC-------------------GTTGAAAA..........................................................................................2360.17100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAA.........................................................................16200.15300000000003000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATATGTAACAGGTAGAAGGAA.....................................................................2570.14100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAAATATGTAACAGGTAGAAGGA......................................................................2770.14100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAATATGTAACAG...............................................................................2270.14100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAATATGTAACAGGTAGAA.........................................................................2570.14100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATATGTAACAGGTAGAAG........................................................................2270.14100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATATGTAACAGGTAGAAGGA......................................................................2470.14100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGA......................................................................19200.10200000002000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAA.....................................................................20200.10200000000002000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGA..........................................................................15200.05100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGTAGAAGGAAGT...................................................................22200.05100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCAAGTCGA........15200.05100000000001000000
droSec2
AGCATTAAAAA--AAACC-TAAT-------T----------------------------------------------------GTTA----A-AGGACAGACA--------------------ATGAAG----GTATATTGAAGTATTTT---------------T----------------------------------------------------------------------------------------------------------------------------------------AC--A----------------------------------------------------------------------------------------------------------CTTT-----TTTT------------------------------------------------TAA-------------------------------------------------------TTGCAT------GCT---------------CCTTTTTTTAT--------ACCCGCTACTTTTA--GA-------GTAAAAGGGTATACTAGATTC-------------------GTTGAAAAGTATGTAACAGGGAGAAGGAAGCGTTTACGACTATATAAAGTATACAT----ATTCTTAATCAGGTTCAATAGCCGAGTCGATCTAGCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAGTATGTAACAGGGA............................................................................2527.501511040
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAGTATGTAACAGGG.............................................................................2425.00108011
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------GTTGAAAAGTATGTAACAGGGA............................................................................2422.5052120
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAGTATGTAACAGGGAGA..........................................................................2721.5033000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAGTATGTAACAGG..............................................................................23201.402828000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTTCAATAGCCGAGTCGATCTA....2511.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAGTATGTAACAGGGAG...........................................................................2621.0022000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTTCAATAGCCGAGTCGATC......2311.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAAGCGTTTACGACTATATAAAGTA...............................................2711.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------GTTGAAAAGTATGTAACAGGG.............................................................................2321.0021010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------GTTGAAAAGTATGTAACAGGGAGA..........................................................................2621.0022000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTAATCAGGTTCAATAGCCGAGTCG.........2711.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGGTTCAATAGCCGAGTCGATC......2811.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------GTTGAAAAGTATGTAACAGGGAG...........................................................................2521.0022000
......................................................................................A----A-AGGACAGACA--------------------ATGAAG----GTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAGTATGTAACAGGGAT...........................................................................2640.2510010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------GTTGAAAAGTATGTAACAGGGAT...........................................................................2440.2511000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATCTAGCCA21200.1020020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAGTATGTAACAGGGATT..........................................................................27100.1011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTC-------------------GTTGAAAAGTAT......................................................................................21200.1020200
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTC-------------------GTTGAAAAGTA.......................................................................................27200.0511000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTC-------------------GT................................................................................................20200.0510100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAG...20200.0511000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--GA-------GTAAAAGGGTATACTAGATTC-------------------GT................................................................................................26200.0510100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTC-------------------GTTGAAAAG.........................................................................................21200.0510001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------GTTGAAAAGTATGTAACAGG..............................................................................21200.0511000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTC-------------------GTTGAAAAGT........................................................................................20200.0510001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTC-------------------GT................................................................................................22200.0511000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTC-------------------GTT...............................................................................................21200.0510001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--GA-------GTAAAAGGGTATACTAGA........................................................................................................................21200.0511000
droYak3
AATATGATAGA------C-CAAC------------------TA-------------A----------------------------------A-CAGGTAAAT----A-------A-AAA----ATCAAT----GCA--------------------------------------------------------------------------------------------------------------------------------------------TACTTT-------------------TAT--TA--TA--------------------T------------------------------TCTTT---------------------------A----------------------TTTTA---A---------------------ACAATAAT-----------------TAT------------------------------------------------------TA------------TTAAATATGATAAGACAAACACTTTTTAT--------ACCCGTTACTCGAA--GA-------GT---GGGGTATACTAAATTA-------------------TGT---AAGTATGTAACAGGCAGAAGGAAACGTTTCCGACCATATAAAGTATATGTATATATTCTTGATCAGTATCAATAGCCAAGTCGATCTGGCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAACGTTTCCGACC.........................................................27200.6513000000000013
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAAACGTTTCC.............................................................22200.05100100000000
droEre2
TAAAAGAGAAA--A-ACC-AAAG----------------------------------------------------------AAAAAA---AAG--AA------CAAC-A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAGTAATATAATATGTAATGGTTAAAAATTTC---------------CC-ATTAAAC--CAAAGGAGCTTTTTAT--------TCCCGTTACTCGTA--GA-------GTAAAAGGGTATACAAGGTTC-------------------GTTGAAAAGTATGTAACAGGCAGAAGGTAGCGTTTCCGACCATATAAAGTATATAT----ATTCTTGATCAGGATCAATAACCGAGTCGAACTGGCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-------------------GTTGAAAAGTATGTAACAGGCAGA..........................................................................26200.1530000003
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGTA--GA-------GTAAAAGGGT................................................................................................................................20200.0510000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----ATTCTTGATCAGGATC......................18200.0510000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC-------------------GTTGAAAAGTATGTAACAGGCAGAA.........................................................................28200.0510000001

Generated: 05/17/2015 at 04:56 AM