ID:

dvi_21731

 Coordinate:

scaffold_13052:1346432-1346582 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.5 -8.2 -8.0 -7.9

Flybase annnotation

CDS [Dvir\GJ19567-cds]; exon [dvir_GLEANR_45:3]; intron [Dvir\GJ19567-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron-
mature
  1. scaffold_12958:1732318-1732341 -
  2. dvi_21731  scaffold_13052:1346520-1346543 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCTGCATAGTAGCATTTTGTTGTATGGCGTTACCCATCTTAGTGTTTATATTGTTTTTGGTAGCATTTTGTTGTACGGTGTTACTCATCTTAGTGTTTATATTGCCTTTGGTTTCACTATGCCCCTTATATATTTGCAAAATCCTATCAACATCGGTTGCATGGCAAAATAATAATTAATGAAATGTTTTTACTATTTTAGAATTCCATAAGGCACAACCTGTCGCTGCACCACTGTTTTCGTAATCGCAA
******************************************************................................(((..((.((.......))))..))).****************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060676
9xArg_ovaries_total
 M061
embryo
 SRR060656
9x160_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 V047
embryo
 SRR060670
9_testes_total
 SRR060678
9x140_testes_total
 M027
male body		 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060675
140x9_ovaries_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060673
9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 V053
head
.........................................................................................TTAGTGTTTATATTGCCTTTGGTT.......................................................................................................................................... 24 0 2 8.00 16 14 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................TTAGTGTTTATATTGTTTTTGGTAGC........................................................................................................................................................................................... 26 0 1 8.00 8 6 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTTACTATTTTAGAATTCCATAAGGC..................................... 27 0 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTTACTATTTTAGAATTCCATAAGGCA.................................... 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAGTGTTTATATTGCCTTTGGTTT......................................................................................................................................... 25 0 2 2.50 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTACTATTTTAGAATTCCATAAGGCAC................................... 28 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCCATAAGGCACAACCTGTCGCT........................ 23 0 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ACTATTTTAGAATTCCATAAGGC..................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTTACTATTTTAGAATTCCATAAG....................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTACTATTTTAGAATTCCATAAGGCA.................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAGTGTTTATATTGCCTTTGGTTTC........................................................................................................................................ 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTACTATTTTAGAATTCCATAAGGC..................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTAGTGTTTATATTGTTTTTGGTAGCA.......................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTAGTGTTTATATTGTTTTTGGT.............................................................................................................................................................................................. 23 0 5 1.20 6 1 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0
......................................TTAGTGTTTATATTGTTTTTGG............................................................................................................................................................................................... 22 0 5 1.20 6 2 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................TCTTAGTGTTTATATTGTTTTTGGT.............................................................................................................................................................................................. 25 0 5 1.20 6 0 0 0 0 1 2 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TAAGGCACAACCTGTCGCTGCACCAA................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGAAATGTTTTTACTATTTTAGAATTCCA........................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CCATAAGGCACAACCTGTCGCTGCACCAC................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTCCATAAGGCACAACCTGTCGC......................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTTTACTATTTTAGAATTCCATAAGGCAC................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGAAATGTTTTTACTATTTTAGAATTCC............................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTACTATTTTAGAATTCCA........................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAGTGTTTATATTGCCTTTGGATTCA....................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TACTATTTTAGAATTCCATAAGGCA.................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TTTTGGTAGCATTTTGTTGTACGGTG........................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TTAGAATTCCAGAAGGCACAACCTGTC........................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TACTATTTTAGAATTCCATAAGGC..................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AACCTGTCGCTGCACCACTGTTTTCG......... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CATAAGGCACAACCTGTCGCTGCACCAC................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TAGTGTTTATATTGCCTTTGGTTTC........................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TAGTGTTTATATTGTTTTTGGTAGC........................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCCATAAGGCACAACCTGTCGCTGC...................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GGCACAACCTGTCGCTGCACCACTGTT............. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TTTACTATTTTAGAATTCCATAAGGCACA.................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AATCCTATCAACATCGGTTGCATGGC...................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTACTATTTTAGAATTCCATAAGG...................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GGCAAAATAATAATTAATGAAATG................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TCCATAAGGCACAACCTGTCGCTG....................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTAGTGTTTATATTGTTTTTGGTAG............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CCATAAGGCACAACCTGT............................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTAGTGTTTATATTGTTTTTGGTAGCT.......................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................GAAATGTTTTTACTATTTTAGAATTCCA........................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAGTGTTTATATTGCCTTTGG............................................................................................................................................ 22 0 4 0.75 3 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................CATCTTAGTGTTTATATTGTTTTTGGTA............................................................................................................................................................................................. 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAGTGTTTATATTGCCTTTGGT........................................................................................................................................... 23 0 4 0.50 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................TAGTGTTTATATTGCCTTTGGTTT......................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TAGTGTTTATATTGCCTTTGGTT.......................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TATATTTGCAAAATCCTATCAACATCGG............................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AACCTGTCACAGCACCACT................ 19 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCTTAGTGTTTATATTGCCTTTGGTT.......................................................................................................................................... 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TCTTAGTGTTTATATTGTTTTTGGTA............................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AGTAGCATTTTGTTGTATGGCGTTACC......................................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TGCATAGTAGCATTTTGTTGTATGGCG.............................................................................................................................................................................................................................. 27 0 20 0.45 9 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0
..TGCATAGTAGCATTTTGTTGTATG................................................................................................................................................................................................................................. 24 0 20 0.40 8 0 0 0 0 0 0 3 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 1 0
..TGCATAGTAGCATTTTGTTGTATGGC............................................................................................................................................................................................................................... 26 0 20 0.35 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 2 0 0
........GTAGCATTTTGTTGTATGGCGTTCCC......................................................................................................................................................................................................................... 26 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAGTGTTTATATTGCCTT............................................................................................................................................... 19 0 11 0.27 3 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0
......................................TTAGTGTTTATATTGTTTTTG................................................................................................................................................................................................ 21 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......TAGTAGCATTTTGTTGTATGGC............................................................................................................................................................................................................................... 22 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAGTGTTTATATTGCCTTTGGTTTGA....................................................................................................................................... 27 1 14 0.14 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0
........................................AGTGTTTATATTGTTTTTGGT.............................................................................................................................................................................................. 21 0 8 0.13 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTAGTGTTTATGTTGTTTTTGGT.............................................................................................................................................................................................. 23 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CTTTATATTGCCTTTGGTT.......................................................................................................................................... 19 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTAGTGTTTATATTGCTTTTGGT.............................................................................................................................................................................................. 23 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAGTGTTTATATTGCTTTTGGT........................................................................................................................................... 23 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TTTTGTTGTATGGCGTTATC......................................................................................................................................................................................................................... 20 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TGCATAGTAGCATTTTGTTGTAT.................................................................................................................................................................................................................................. 23 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TAGCATTTTGTTGTATGGCGTTAC.......................................................................................................................................................................................................................... 24 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TGCATAGTAGCCTTTTGTTGTATGGCG.............................................................................................................................................................................................................................. 27 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................TCTTAGTGTTTATATTGCCTTTG............................................................................................................................................. 23 0 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................ACTCATCTTAGTGTTTATATTGC.................................................................................................................................................. 23 0 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TACTCATCTTAGTGTTTATATTGCC................................................................................................................................................. 25 0 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AAGTTCTTACTCATCTTAGTGTTTA........................................................................................................................................................ 25 3 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAGTGTTTATATTGCCTTTTGTGT......................................................................................................................................... 25 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AAGTTCTTACTCATCTTAGTGT........................................................................................................................................................... 22 3 18 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTAGTGTTTATATTGCTGGTG................................................................................................................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAGTGTTTATATTGCCTTTGGTTC......................................................................................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.CTGCATAGTAGCCTTTTGTTGTAT.................................................................................................................................................................................................................................. 24 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AGTAGCATTTTGTTGTATGGCGT............................................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TAGCATTTTGTTGTATGGCGTTA........................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ATCTTAGTGTTTATATTGCTGGT.............................................................................................................................................. 23 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.CTGCATAGTAGCATTTTGTTGTATGGCG.............................................................................................................................................................................................................................. 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.CTGCATAGTAGCATTTTGTTGT.................................................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TGCATAGTAGCATTTTGTTGTATGGCC.............................................................................................................................................................................................................................. 27 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...GCATAGTAGCATTTTGTTGTATGGC............................................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TTAGTGTTTATATTGCTTTGG............................................................................................................................................. 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
GCTGCATAGTAGCATTTTGTTGTATGG................................................................................................................................................................................................................................ 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..TGCATAGTAGCATTTTGTTG..................................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................TGTGGCATTTGGTTGTACGG............................................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.CTGCATAGTAGCATTTTGTTGTATA................................................................................................................................................................................................................................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TTAGTGTTTATATTGCTTTGG................................................................................................................................................................................................ 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................GTGTTGTCCGGTGTTGCTC..................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGACGTATCATCGTAAAACAACATACCGCAATGGGTAGAATCACAAATATAACAAAAACCATCGTAAAACAACATGCCACAATGAGTAGAATCACAAATATAACGGAAACCAAAGTGATACGGGGAATATATAAACGTTTTAGGATAGTTGTAGCCAACGTACCGTTTTATTATTAATTACTTTACAAAAATGATAAAATCTTAAGGTATTCCGTGTTGGACAGCGACGTGGTGACAAAAGCATTAGCGTT
******************************************************************************************************************************************................................(((..((.((.......))))..))).****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 M027
male body		 SRR060673
9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060670
9_testes_total
 SRR060676
9xArg_ovaries_total
 V116
male body		 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060654
160x9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060655
9x160_testes_total
 SRR060659
Argentina_testes_total
 SRR060683
160_testes_total
 SRR060668
160x9_males_carcasses_total
........................................................................CATGCCACAATGAGTAGAATCACAAAT........................................................................................................................................................ 27 0 1 67.00 67 64 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ATGCCACAATGAGTAGAATCACAAAT........................................................................................................................................................ 26 0 1 16.00 16 15 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGACAGCGACGTGGTGACAAAAGCAT....... 26 0 1 15.00 15 13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTTGGACAGCGACGTGGTGACAAA............ 24 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CATACCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 27 0 3 6.33 19 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................ACATGCCACAATGAGTAGAATCACAAAT........................................................................................................................................................ 28 0 1 6.00 6 5 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CATGCCACAATGAGTAGAATCACAAA......................................................................................................................................................... 26 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GCCACAATGAGTAGAATCACAAAT........................................................................................................................................................ 24 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TGCCACAATGAGTAGAATCACAAAT........................................................................................................................................................ 25 0 1 5.00 5 3 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ATTCAAGAATGAGTAGAATCACAAAT........................................................................................................................................................ 26 3 13 4.31 56 0 0 0 3 0 3 5 0 3 4 3 0 8 11 2 3 3 1 3 1 1 1 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................GACGTGGTGACAAAAGCATTAG.... 22 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGACAGCGACGTGGTGACAAA............ 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACAGCGACGTGGTGACAAAAGCAT....... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TATTAATTACTTTACAAAAATGATAA...................................................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAGCGACGTGGTGACAAAAGCAT....... 23 0 1 3.00 3 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GGAATATATAAACGTTTTAGGATAGT...................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGGACAGCGACGTGGTGACAAA............ 22 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGGACAGCGACGTGGTGACAAAAGCAT....... 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ATACCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 26 0 3 2.00 6 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................AAAACAACATGCCACAATGAGTAGAAT............................................................................................................................................................... 27 0 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................ACAACATGCCACAATGAGTAGAATCA............................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ACATACCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 28 0 3 2.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTGTTGGACAGCGACGTGGTGACAAA............ 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TGTTGGACAGCGACGTGGTGACAAA............ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TAAACGTTTTAGGATAGTTGTAGCCA.............................................................................................. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GACAGCGACGTGGTGACAAA............ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GACAGCGACGTGGTGACAAAAGCAT....... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGGTGACAAAAGCATTAG.... 18 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................ACCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 24 0 3 1.67 5 4 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TTCAAGAATGAGTAGAATCACAAAT........................................................................................................................................................ 25 3 13 1.31 17 0 0 0 0 0 2 1 0 0 2 0 0 4 1 3 0 1 1 0 0 0 0 0 2 0 0 0 0 0
........................................................................CATGCCACAATGAGTAGAATCA............................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTTGGACAGCGACGTGGTGACAAAA........... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................AATGCCACAATGAGTAGAATCACAAAT........................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................CCATGCCACAATGAGTAGAATCACAAAT........................................................................................................................................................ 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CATGCCACAATGAGTAGAATCAGA........................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GACAGCGACGTGGTGACAAAAGCA........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGACGTGGTGACAAAAGCATTAGCG.. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 23 0 4 1.00 4 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACAGCGACGTGGTGACAAAAGCATT...... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGTTGGACAGCGACGTGGTGACAAAA........... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTGTTGGACAGCGACGTGGTGACA.............. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAGCGACGTGGTGACAAAAGCA........ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAATTACTTTACAAAAATGATA....................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CATGCCACAATGAGTAGAATCACAAATT....................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GCAGCGACGTGGTGACAAAAGCAT....... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................ACCGTTTTATTATTAATTACTTTACAAA.............................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGTGGTGACAAAAGCATTAG.... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CATGCCACAATGAGTAGAATCACGAA......................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................ACATGCCACAATGAGTAGAATCACAAA......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CATACCGCAATGGGTAGAATCACAAA............................................................................................................................................................................................................ 26 0 3 1.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CTTATTAATTACTTTACAAAAATGATAA...................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTTACAAAAATGATAAAATCTTAAGGT........................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGCGACGTGGTGACAAAAGCATT...... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGCGACGTGGTGACAAAAGCAT....... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCGACGTGGTGACAAAAGCATT...... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CATGCCACAATGAGTAGAATC.............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................CGTTTTATTATTAATTACTTTACAAA.............................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TTGGACAGCGACGTGGTGACAAAAGCAT....... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TAATTACTTTACAAAAATGATAAA..................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CATGCCACAATTAGTAGAATCACAAAT........................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................ACGTACCGTTTTATTATTAATTACTTTA.................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGACGTGGTGACAAAAGCATTAG.... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGGATAGTTGTAGCCAACGTACCGTT.................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGACAGCGACGTGGTGACAAATAT......... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGACAGCGACGTGGTGAC............... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATTTGGACAGCGACGTGGTGACAAAAGC......... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTAATTACTTTACAAAAATGATA....................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGGACAGCGACGTGGGGACAAAAGCAT....... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AGTTGTAGCCAACGTACCGTTTTAT................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CGTGTTGGACAGCGACGTGGTGACAAAA........... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CATGCCACAATGAGTAGAATCACAAGT........................................................................................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACAGCGACGTGGTGACAAA............ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGCGACGTGGTGACAAAAGCATTA..... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................AACATGCCACAATGAGTAGAATCACAAAT........................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CAGCGACGTGGTGACAAAAACATTA..... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGACAGCGACGTGGTGACAAAAGCA........ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TAAACCAACATGCCACAATGAGTAGAATC.............................................................................................................................................................. 29 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GCGACGTGGTGACAAAAGCA........ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CCTATTAATTACTTTACAAAAATGATAA...................................................... 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TCAAGAATGAGTAGAATCACAAAT........................................................................................................................................................ 24 3 20 0.80 16 0 0 0 1 0 3 1 0 0 2 0 0 3 2 0 0 1 0 0 0 1 0 2 0 0 0 0 0 0
..............................................................................ACAATGAGTAGAATCACAAAT........................................................................................................................................................ 21 0 12 0.67 8 1 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 1 0 0 1 2 0 0 0 0 0 0
........................................................................CATGCCACAATGAGTAGAATCACAAATC....................................................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................ACTTTACAAAAATGATAA...................................................... 18 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CCACAATGAGTAGAATCACAAAT........................................................................................................................................................ 23 0 9 0.44 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AATACCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 27 1 5 0.40 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................AACATACCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 29 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TACCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ATACCGCAATGGGTAGAATCACAAA............................................................................................................................................................................................................ 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TACCGCAATGGGTAGAATCACAAA............................................................................................................................................................................................................ 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CCCGTTTTATTATTAATTA....................................................................... 19 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CGCAATGGGTAGAATCACAAATATA........................................................................................................................................................................................................ 25 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................TATCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 25 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CACAATGAGTAGAATCACAAAT........................................................................................................................................................ 22 0 11 0.18 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................TTCCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 25 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ATACCGCAATGGGTGGAATCACAAAT........................................................................................................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ACATACCGCAATAGGTAGAATCACAAAT........................................................................................................................................................................................................... 28 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TAATACCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 28 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ATAATACCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 29 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATGAGTAGAATCACAAAT........................................................................................................................................................ 18 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0
...............................................................................CAATGAGTAGAATCACAAAT........................................................................................................................................................ 20 0 20 0.15 3 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AACCGCAATGGGTAGAATCACAAAT........................................................................................................................................................................................................... 25 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAGGTATGCCATGTTGGCC............................. 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CCACAATGAGTAGAATCACAA.......................................................................................................................................................... 21 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TCAAGAATGAGTAGAATCACAAATA....................................................................................................................................................... 25 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................CGCAATGGGTAAAATCACAAAT........................................................................................................................................................................................................... 22 1 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CACAATGAGTAGAATCACAAA......................................................................................................................................................... 21 0 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TTCAAGAATGAGTAGAATCACAAA......................................................................................................................................................... 24 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GCCCCAATGAGCAGAATCACAAAT........................................................................................................................................................ 24 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................TTCAAGAATGAGTAGAATCACAA.......................................................................................................................................................... 23 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................AAAATGAGTAGAATCACAAAT........................................................................................................................................................ 21 1 16 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................ACAATGAGAAGAATCACAAAT........................................................................................................................................................ 21 1 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................ACAATGAGTTGAATCACAAAT........................................................................................................................................................ 21 1 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................AATGAGTAGAATCACAAAT........................................................................................................................................................ 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CAATGAGTAGAATCACAAATATA..................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................TGCAATGGGTAGAATCACAA............................................................................................................................................................................................................. 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................AAAATGAGTAGAATCACAATT........................................................................................................................................................ 21 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TCAAGAATGAGTAGAATCACAAATAT...................................................................................................................................................... 26 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....TATCATCGTAAAACAACATAC................................................................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CAATGAGTAGAATCACAAA......................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATGTTTTAGGATAGTTGTAGCC............................................................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CGACGTATCATCGTAAAACAA...................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................CTGCAATGGGTAGAATCACAAATATA........................................................................................................................................................................................................ 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CGCAATGGGTAGAATCATAA............................................................................................................................................................................................................. 20 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATGAGTAGAATCACAAATATA..................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
CGACGTATCATCGTAAAACAACATAC................................................................................................................................................................................................................................. 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13052:1346382-1346632 - dvi_21731 GCTGCATAGTAGCATTTTGTTGTATGGCGTTACCCATCT--------TAGTGTTTATATTGTTTTTGGTAGCATTTTGTTG----TACGGTGTTACTCATCTTAGTGTTTATATTGCCTTTGGTTTCACTATGCCCCTTATATATTTGCAAAATCCTATCAACATCGGTTGCATGGCAAAATAATAATTAATG-------AAATGT-----TTTTAC-----TA-TTTTAGAATTCCATAAGGCACAACCTGTCGCTGCACCA-CTGTTTTCGTAATCGCAA
droMoj3 scaffold_6308:141097-141185 + CTGA---------------------------------------------TTGTTTTTATTGTTGTTGGCAGCATATTGCTGCTTCTAC---------------------------------------------------------------------------------------------------------------------------------------------------TGCGTTTGTGTAATTTTCTTTTATGTTG-TTGCTGTTTTTAATTTGC
droGri2 scaffold_14822:368889-368966 - ATAATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATAA-----TTTT-----TTCT-TTGCAGAATTCGATTAGGCATAATTTATCGTTGCATCA-TTGTTTTCGCAATCGCAA
droWil2 scf2_1100000004943:1032193-1032257 - TT-----------------------------------------------CT---------------------------------------------------------------------------------------------------------------------------------------------------------------A-----AA----TG-TTTCAGAATTCTATTAGACATAATTTGTCTCTACACCA-TTGCTTCCGCAACCGAAA
droPer2 scaffold_51:56686-56740 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGAACTCAATTAGGCACAACTTGTCGCTCCACCA-CTGCTTTCGTAATCGAAA
droAna3 scaffold_13099:2059369-2059428 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTGTAGAATTCTATAAGGCATAATTTATCACTTCATCA-CTGCTTTCGTAACCAAAA
droBip1 scf7180000395111:18441-18534 + AAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATAAATGAATC-------TTTATTATTATACAATT-TT-TTTTAGAACTCTATTAGGCATAATTTATCACTTCATCA-CTGTTTTCGTAACCGAAA
droKik1 scf7180000302243:9607-9698 + CAGT----------------------------------------------T-----------------------------------------------------------------------------------------------------------------------GCAATGTA------------ATTTAGCATATAATAA--TTG---------TTAT-TTACAGAACTCAATAAGACATAACTTGTCACTTCACCA-CTGCTTTCGCAATAGGAA
droFic1 scf7180000454086:166707-166799 + AA-----------------------------------------------TT-----------------------------------------------------------------------------------------------------------------------------------AATTATTAATTAAGC---TAATT-----AATTTGAAT-TTTT-TTCCAGAACTCCATAAGGCATAACTTATCATTGCACCA-TTGCTTTCGCAATCGAAA
droEle1 scf7180000491238:1355559-1355630 - AA-----------------------------------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTACATTT--T-TTTAAGAACTCCATAAGGCATAATTTATCACTACACCA-CTGCTTTCGTAACCGAAA
droRho1 scf7180000780202:41312-41387 + ATAA---------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATGCATTTTTTA-TAAAGAATTCCATAAGGCATAATTTATCACTACACCA-CTGCTTTCGCAACCGAAA
droBia1 scf7180000302087:188270-188367 - AAAGTGTAGTTTG------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------AAATGTGT---TAATT-----AATTGAAAAACGAT-TTATAGAACTCCATAAGGCACAATTTATCTCTACATCA-CTGCTTTCGTAACAGAAA
droTak1 scf7180000415683:239657-239820 - GCTGCGTAATTTGCTTTGACTTTATGGAATTTTGAATTTATTTGAGCTAGTGTTTTTATTTTGTTTGATACATTTTTATTG----TTTGTTTTCAATTTGTTTTGTTTTTA-------------------------------------------------------------------------------------------------------TGTAA-------TTTTTAATTATAGGTGGTATGTTTTTTAATTATTTGATCTATTTTAGTAAC----A
droEug1 scf7180000406964:106450-106513 + TT-----------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------A----------TTTG-TATAGAACTCTATAAGACATAACTTATCACTACACCA-CTGCTTTCGCAATCGAAA
dm3 chr4:173041-173114 + AA-----------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTACAATTTTAA-AATAGAATTCCATTAGGCATAACTTATCATTACACCA-TTGCTTTCGTAACCGAAA
droSim2 4:120846-120919 + AA-----------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTACAATTTCAA-AATAGAATTCCATTAGGCATAATTTATCATTGCACCA-TTGCTTTCGTAACCGAAA
droSec2 scaffold_52:114639-114712 + AA-----------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTACAATTTCAA-AATAGAATTCCATTAGGCATAATTTATCATTACACCA-TTGCTTTCGTAACCGAAA
droYak3 4:144244-144323 + TAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CAATA-----ATTTTACAAATTTTA-AACAGAATTCCATTAGGCATAACTTATCATTGCACCA-TTGCTTTCGTAACCGAAA
droEre2 scaffold_4512:1157030-1157098 - T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAATTTTAA-AATAGAATTCCATTAGGCATAACTTATCATTGCACCA-TTGCTTTCGTAACCTAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCTGCATAGTAGCATTTTGTTGTATGGCGTTACCCATCT--------TAGTGTTTATATTGTTTTTGGTAGCATTTTGTTG----TACGGTGTTACTCATCTTAGTGTTTATATTGCCTTTGGTTTCACTATGCCCCTTATATATTTGCAAAATCCTATCAACATCGGTTGCATGGCAAAATAATAATTAATG-------AAATGT-----TTTTAC-----TA-TTTTAGAATTCCATAAGGCACAACCTGTCGCTGCACCA-CTGTTTTCGTAATCGCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................TTAGTGTTTATATTGCCTTTGGTT.............................................................................................................................................................2428.00160014000000000000000000000000101000000000000000000000000000000000
......................................T--------TAGTGTTTATATTGTTTTTGGTAGC..................................................................................................................................................................................................................2618.008006100000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................TTTTAC-----TA-TTTTAGAATTCCATAAGGC......................................2715.005004100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TTTTAC-----TA-TTTTAGAATTCCATAAGGCA.....................................2813.003003000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTAGTGTTTATATTGCCTTTGGTTT............................................................................................................................................................2522.505004000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................TTTAC-----TA-TTTTAGAATTCCATAAGGCAC....................................2812.002001100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TCCATAAGGCACAACCTGTCGCT.........................2312.002001000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AC-----TA-TTTTAGAATTCCATAAGGC......................................2312.002002000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TTTTAC-----TA-TTTTAGAATTCCATAAG........................................2512.002002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TTTAC-----TA-TTTTAGAATTCCATAAGGCA.....................................2712.002002000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTAGTGTTTATATTGCCTTTGGTTTC...........................................................................................................................................................2612.002001000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................TTTAC-----TA-TTTTAGAATTCCATAAGGC......................................2612.002002000000000000000000000000000000000000000000000000000000000000
......................................T--------TAGTGTTTATATTGTTTTTGGTAGCA.................................................................................................................................................................................................................2712.002002000000000000000000000000000000000000000000000000000000000000
......................................T--------TAGTGTTTATATTGTTTTTGGT.....................................................................................................................................................................................................................2351.206001000000000000000000000002000001000110000000000000000000000000
......................................T--------TAGTGTTTATATTGTTTTTGG......................................................................................................................................................................................................................2251.206002000000000000000000000101000000000110000000000000000000000000
....................................TCT--------TAGTGTTTATATTGTTTTTGGT.....................................................................................................................................................................................................................2551.206000000000000000000000000210000000020100000000000000000000000000
..............................................................................................................................................................................................................................................TAAGGCACAACCTGTCGCTGCACCA-A.................2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TG-------AAATGT-----TTTTAC-----TA-TTTTAGAATTCCA............................................2911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CCATAAGGCACAACCTGTCGCTGCACCA-C.................2911.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TTCCATAAGGCACAACCTGTCGC..........................2311.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................TTTTAC-----TA-TTTTAGAATTCCATAAGGCAC....................................2911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TG-------AAATGT-----TTTTAC-----TA-TTTTAGAATTCC.............................................2811.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TTTAC-----TA-TTTTAGAATTCCA............................................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TAC-----TA-TTTTAGAATTCCATAAGGCA.....................................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................TTTTGGTAGCATTTTGTTG----TACGGTG..............................................................................................................................................................................................2611.001000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TAC-----TA-TTTTAGAATTCCATAAGGC......................................2411.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AACCTGTCGCTGCACCA-CTGTTTTCG.........2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CATAAGGCACAACCTGTCGCTGCACCA-C.................2811.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................TAGTGTTTATATTGCCTTTGGTTTC...........................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...............................................TAGTGTTTATATTGTTTTTGGTAGC..................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................TCCATAAGGCACAACCTGTCGCTGC.......................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GGCACAACCTGTCGCTGCACCA-CTGTT.............2711.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TTTAC-----TA-TTTTAGAATTCCATAAGGCACA...................................2911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................AATCCTATCAACATCGGTTGCATGGC.........................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................TTAC-----TA-TTTTAGAATTCCATAAGG.......................................2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................GGCAAAATAATAATTAATG-------AAATG.............................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TCCATAAGGCACAACCTGTCGCTG........................2411.001100000000000000000000000000000000000000000000000000000000000000
......................................T--------TAGTGTTTATATTGTTTTTGGTAG...................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................CCATAAGGCACAACCTGT.............................1811.001001000000000000000000000000000000000000000000000000000000000000
......................................T--------TAGTGTTTATATTGTTTTTGGTAGCT.................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................G-------AAATGT-----TTTTAC-----TA-TTTTAGAATTCCA............................................2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTAGTGTTTATATTGCCTTTGG...............................................................................................................................................................2240.753001000000000000000000000001100000000000000000000000000000000000
..................................CATCT--------TAGTGTTTATATTGTTTTTGGTA....................................................................................................................................................................................................................2820.501000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................TTAGTGTTTATATTGCCTTTGGT..............................................................................................................................................................2340.502000000100000000000000001000000000000000000000000000000000000000
......................................................................................................TAGTGTTTATATTGCCTTTGGTTT............................................................................................................................................................2420.501001000000000000000000000000000000000000000000000000000000000000
......................................................................................................TAGTGTTTATATTGCCTTTGGTT.............................................................................................................................................................2320.501001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TATATTTGCAAAATCCTATCAACATCGG..................................................................................................................2820.501001000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCTTAGTGTTTATATTGCCTTTGGTT.............................................................................................................................................................2620.501000000100000000000000000000000000000000000000000000000000000000
....................................TCT--------TAGTGTTTATATTGTTTTTGGTA....................................................................................................................................................................................................................2620.501001000000000000000000000000000000000000000000000000000000000000
.......AGTAGCATTTTGTTGTATGGCGTTACC........................................................................................................................................................................................................................................................2720.501001000000000000000000000000000000000000000000000000000000000000
..TGCATAGTAGCATTTTGTTGTATGGCG.............................................................................................................................................................................................................................................................27200.459000000000000000000000000004000000000005000000000000000000000000
..TGCATAGTAGCATTTTGTTGTATG................................................................................................................................................................................................................................................................24200.408000000000000000000000000000003040000000100000000000000000000000
..TGCATAGTAGCATTTTGTTGTATGGC..............................................................................................................................................................................................................................................................26200.357003020000002000000000000000000000000000000000000000000000000000
.....................................................................................................TTAGTGTTTATATTGCCTT..................................................................................................................................................................19110.273000000000000000000000000010100000000100000000000000000000000000
......................................T--------TAGTGTTTATATTGTTTTTG.......................................................................................................................................................................................................................2150.201000000000000000000000000010000000000000000000000000000000000000
......TAGTAGCATTTTGTTGTATGGC..............................................................................................................................................................................................................................................................22200.153000000000000000000000000000000030000000000000000000000000000000
................................................AGTGTTTATATTGTTTTTGGT.....................................................................................................................................................................................................................2180.131000000000000000000000000100000000000000000000000000000000000000
..TGCATAGTAGCATTTTGTTGTAT.................................................................................................................................................................................................................................................................23200.102000000000000000000000000200000000000000000000000000000000000000
.........TAGCATTTTGTTGTATGGCGTTAC.........................................................................................................................................................................................................................................................24200.102000000000000000000000000000000000000200000000000000000000000000
...................................................................................................TCTTAGTGTTTATATTGCCTTTG................................................................................................................................................................23100.101000000000000000000000000000000000000100000000000000000000000000
..............................................................................................ACTCATCTTAGTGTTTATATTGC.....................................................................................................................................................................23100.101000000000000000000000000100000000000000000000000000000000000000
.............................................................................................TACTCATCTTAGTGTTTATATTGCC....................................................................................................................................................................25100.101001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TTAGTGTTTATATTGCCTTTGGTTC............................................................................................................................................................25200.051000000000000000000000000000000000000001000000000000000000000000
.......AGTAGCATTTTGTTGTATGGCGT............................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000001000000000000000000000000000
.........TAGCATTTTGTTGTATGGCGTTA..........................................................................................................................................................................................................................................................23200.051000000000000000000001000000000000000000000000000000000000000000
.CTGCATAGTAGCATTTTGTTGTATGGCG.............................................................................................................................................................................................................................................................28200.051000000000000000000000000000000000000010000000000000000000000000
.CTGCATAGTAGCATTTTGTTGT...................................................................................................................................................................................................................................................................22200.051000000000000000000000000100000000000000000000000000000000000000
..TGCATAGTAGCATTTTGTTGTATGGCC.............................................................................................................................................................................................................................................................27200.051000000000000000000000000000001000000000000000000000000000000000
...GCATAGTAGCATTTTGTTGTATGGC..............................................................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
GCTGCATAGTAGCATTTTGTTGTATGG...............................................................................................................................................................................................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
..TGCATAGTAGCATTTTGTTG....................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000001000000000000000000000000000
.CTGCATAGTAGCATTTTGTTGTATA................................................................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
CTGA---------------------------------------------TTGTTTTTATTGTTGTTGGCAGCATATTGCTGCTTCTAC---------------------------------------------------------------------------------------------------------------------------------------------------TGCGTTTGTGTAATTTTCTTTTATGTTG-TTGCTGTTTTTAATTTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ATAATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATAA-----TTTT-----TTCT-TTGCAGAATTCGATTAGGCATAATTTATCGTTGCATCA-TTGTTTTCGCAATCGCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TT-----------------------------------------------CT---------------------------------------------------------------------------------------------------------------------------------------------------------------A-----AA----TG-TTTCAGAATTCTATTAGACATAATTTGTCTCTACACCA-TTGCTTCCGCAACCGAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droPer2
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGAACTCAATTAGGCACAACTTGTCGCTCCACCA-CTGCTTTCGTAATCGAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTGTAGAATTCTATAAGGCATAATTTATCACTTCATCA-CTGCTTTCGTAACCAAAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATATAAATGAATC-------TTTATTATTATACAATT-TT-TTTTAGAACTCTATTAGGCATAATTTATCACTTCATCA-CTGTTTTCGTAACCGAAASizeHit CountTotal NormTotal
No Reads
droKik1
CAGT----------------------------------------------T-----------------------------------------------------------------------------------------------------------------------GCAATGTA------------ATTTAGCATATAATAA--TTG---------TTAT-TTACAGAACTCAATAAGACATAACTTGTCACTTCACCA-CTGCTTTCGCAATAGGAASizeHit CountTotal NormTotal
No Reads
droFic1
AA-----------------------------------------------TT-----------------------------------------------------------------------------------------------------------------------------------AATTATTAATTAAGC---TAATT-----AATTTGAAT-TTTT-TTCCAGAACTCCATAAGGCATAACTTATCATTGCACCA-TTGCTTTCGCAATCGAAASizeHit CountTotal NormTotal
No Reads
droEle1
AA-----------------------------------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTACATTT--T-TTTAAGAACTCCATAAGGCATAATTTATCACTACACCA-CTGCTTTCGTAACCGAAASizeHit CountTotal NormTotal
No Reads
droRho1
ATAA---------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------ATTATGCATTTTTTA-TAAAGAATTCCATAAGGCATAATTTATCACTACACCA-CTGCTTTCGCAACCGAAASizeHit CountTotal NormTotal
No Reads
droBia1
AAAGTGTAGTTTG------------------------------------TT------------------------------------------------------------------------------------------------------------------------------------------AAATGTGT---TAATT-----AATTGAAAAACGAT-TTATAGAACTCCATAAGGCACAATTTATCTCTACATCA-CTGCTTTCGTAACAGAAASizeHit CountTotal NormTotal
No Reads
droTak1
GCTGCGTAATTTGCTTTGACTTTATGGAATTTTGAATTTATTTGAGCTAGTGTTTTTATTTTGTTTGATACATTTTTATTG----TTTGTTTTCAATTTGTTTTGTTTTTA-------------------------------------------------------------------------------------------------------TGTAA-------TTTTTAATTATAGGTGGTATGTTTTTTAATTATTTGATCTATTTTAGTAAC----ASizeHit CountTotal NormTotal
No Reads
droEug1
TT-----------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------A----------TTTG-TATAGAACTCTATAAGACATAACTTATCACTACACCA-CTGCTTTCGCAATCGAAASizeHit CountTotal NormTotal
No Reads
dm3
AA-----------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTACAATTTTAA-AATAGAATTCCATTAGGCATAACTTATCATTACACCA-TTGCTTTCGTAACCGAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................TACACCA-TTGCTTTCGTAACCGAA.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
droSim2
AA-----------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTACAATTTCAA-AATAGAATTCCATTAGGCATAATTTATCATTGCACCA-TTGCTTTCGTAACCGAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
AA-----------------------------------------------TT---------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTACAATTTCAA-AATAGAATTCCATTAGGCATAATTTATCATTACACCA-TTGCTTTCGTAACCGAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C---CAATA-----ATTTTACAAATTTTA-AACAGAATTCCATTAGGCATAACTTATCATTGCACCA-TTGCTTTCGTAACCGAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAATTTTAA-AATAGAATTCCATTAGGCATAACTTATCATTGCACCA-TTGCTTTCGTAACCTAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 08:18 PM