dvi_21656

Name	Class	Family	Strand
Helitron-1_DVir	RC	Helitron	+

Species	Coordinate	ID	Alignment
droVir3	scaffold_13324:2542419-2542669 +	dvi_21656	AATGA---------------CAACAAGTTT-AAATGGTTGT--------------------------ACCGATGTAC-CAACGCCT----------------------------------TTGAGCG-------------------------------------------GTGAGTATTCAT-------T--TGTTTT------------------T--------------------A---TACCC----TGAACCCATTAAAA-ATGGGT-ATAAGGGTATATTGTA-TA-TGTGCAAAATCCAAATGTATGTAACA-GGCAGAAGGAA-GCATCTCCGACCCCATA-----------------TGATCAGCATAAATAGCCGAGTCGATCTAGCCATATCCGTCTGTCCG------------TATGTATGAATG----CA------------------AGGATCTTAGAACCT-----ATAAGAG
droMoj3	scaffold_6540:33186773-33187026 -		AACTT---------------TAT----------ATGTTTGTATCCCAT-------------GTCTTCATAAACGGAT-------------------------------------------TT-------------AAGTCTCTTGCGCTTACA----------------------------G-------T--TCTTAT------------------T--------------------A---TACCC----TGAACCCATTGAAA-ATGGGAAATCAGGGTATAATGGT-TT-TGTGAA-------AAAGTATGTAACG-GGCAGAAGGAG-GCGTGGCAGACCCCACAAAGTATATAT--ATTCTTGATCAGCGCGATGAGCTGAGTCGATATAGCCTTGTCCGTCTGTCCG----------------TATGAGTG----CG------------------TCGATCTCAGAAGAT-----ATAACAG
droGri2	scaffold_14822:526199-526454 +		TAAT-----------------ATCAAGTTC-ATATGCAAGT--------------------------ATTAATTTAA-TAATTTTTCTAAACTGT-----------------------------------------------------T------------------------T-----ATC-------T--ACTTTT------------------T--------------------A---TACCC----TGAACGCATTAAAA-ATGGGTAAAAATGGTATAATGGT-TT-TGTGCA-------AATGTATGTAACA-GGCAGAAAGAA-GCATCTCCGATCCCATAAAGTATATAT--ATTCTTGATCAGGAT-AACAGCCGAACCGATATAGTCATGTCCGTCCGTCCGTTC--------ATCTGTATGAAAA----CG------------------CAGATCGCAGAGACC-----ATAAGAG
droWil2	scf2_1100000004585:3969460-3969719 +		AATGA---------------TGATAAATTG-A--------TAAATGTT-------------AGCTGAATGAACGTAA-AA------------GATTAGT---------------C------------------------------TGCATACA---------------------------------------GATTTT------------------T--------------------A---TACCA----TACACCC-------ATAGGGT-GAAATGGTATATTAAA-GT-CGCCAA-------AATGTATGTAACA-GGCAGAAGGAA-GCATCTCCGACCCCACAAAGTATATAT--ATTCCTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGTCCGTATGAACA----CC------------------TAGATCTCGGAGACT-----ATAAGAG
dp5	Unknown_group_2:32494-32748 +		AATGA---------------AAA---AC---------------------------------------------GGA----GCCTGC-----------------------------------------------------------------CTGATTGT---------------------------------ATTTTATATATCATGTCTTTGTGTTGA--TAATTAAAAAGTTTTTAAGTTACCC----GATACTCA----AA-ATGAGT-ATAGGGGTATATTAGA-TT-TGTGGTAAAAGTGGATGTGTGTAACG-TCCAGAAGGAC-GCGTTTCCGACCCCATAAGGTATATAT--ATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCC--------GTCTGCCTGTACG----T-------------------------------ACT------TTAGAA
droPer2	scaffold_3638:950-1233 -		GAGCA---------------TAT----------ATATTAATA--------------------------CATATATAC-----------------------------------ATATG------TACATCT-----AACCCTC------TTG-------GACGCAA------TAA-------CTACACATATAACTCAT------------------T--------------------A---TACCC----GATACTCA----TA-ATGAGT-ATTGGGGTATATTAGA-TT-TGTGGTAAAAGTGTATGTGTGTAACG-TCCAGAAGGAA-TCGTTTCCGACCCCATAAAGTATATAT--ATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCC--------GTCCGTCTGTCCG----TC------TGTCTGAGTTCAAGGATCTCAGAACCC-----ATAAGAG
droAna3	scaffold_13339:4421908-4422135 -		TTACC---------------TAA----------CTGC------------------------------AAGGGTGTAT-CA------------ACTTCGG---------------CT----CCGCCC-----------------------------------------GAAGTAAGATTTCCT-------T--TCTTGT------------------T--------------------A---TACCC----TT------------GC-------AGAGGGTATTATAAT-TT-TGGTCA-------AAAGTGTGCAACG-CAGTGAAGGAG-ACATCTCCGACCCTATAAAGTATATAT--AT--GTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCG----------------TTTCTACGCAAACT------------------AGTCTCTCAG----T-----TTTAAAG
droBip1	scf7180000395086:16731-16942 -		TAAAT---------------GATTGATC-----------------------------------------GGAAATGC-CA--------------------------------AAACT------T------------------------T--------------------------------G-------G--TGTTTT------------------T--------------------A---TAACC----GGTACTT-------GTAGAGT-ATAAGTGTATAATTGTAGT-CGGTG--------AATGTATGTACCA-TAGAGAAGGAA-TCATCTCCGGCCCCATAAAGTA--------TTCTTGATCAGCATCAACAGCCTAGTCGACATAGCCATGTCCGTCTGTCCG----------------TATGAACG----CG------------------TGGATCTCAGAGACT-----ATAAGAG
droKik1	scf7180000302356:8681-8907 -		AATTT---------------CAAAAAATTT-AAATCGAT------------------------------CCATA------ATCTATCTAAGGTAT-----------------------------------------------------T--------------------------------T-------A--TTTTTT------------------T--------------------A---TACCC----TT---------------------GCAGGGTATTATAAT-TT-CAGTCA-------GAAGTTTGCAACG-CAGTGAAGGAG-ACGTTTCCGACCCTATAAAGTATAGAT--ATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCTGTCTGTCTGTCT--------GTCTGTTTCTACGCAAACT------------------AGTCCCTCAG----T-----TTTAAAG
droFic1	scf7180000453926:281938-282195 -		AACCT---------------CGGTGATC-CAAAACGTTTGT--------------------------ACCCTTGCAG-TTAAA-A------------------------------------------------------CTTTAGCCTATGAAGA---------------------TTTTTC-------T--TTTTGT------------------TAAATCTATT-----------A---AAACA----ACAAATTATTAAAT-ATTGAA-GTAAGTGCAG-----A-AA-TGTTTAAAATCGAAAAGTATGTAACA-GGTTGAAGGGA-GCCCTTACAACCCTCTGTAGTATATATAGATTTTTGATCAGGATCATCAGACAAGTCGATCTATGTATGTCTGTCTGTCTG----------------TTTAGAAT---ATT------------------GGGA---------C--------TAGAA
droEle1	scf7180000490847:1445-1692 -		AGTAT---------------AA-----------GTATAAGT--------------------------ATGGATATAA-----------------------------------AAATG------TGAGGAG-----GACTAAC------TTG-------T---------------------------------ACTTTG------------------T--------------------A---TACTCTGCCGCTCCACA----A-GTAGAGT-AAAAGGGTATATTATA-TT-CGTTGA-------AAAGTATGTGACA-GGTAGAAAGAA-GCGTATCCGACAATATAAAGTATATAT--ATTTTTAATCAGGATCAATAGCCGAATCGATCTAGACATGTCCGTCTGTCTGTCC--------GTCTGTATGAACG----TC------------------GAGATCTCGGAAACT-----ATTAAAG
droRho1	scf7180000779910:2415-2664 +		AAGGA---------------CAATAAATG-------G-------------------------------CCTATACAA-AAAATTCT----------------------------------ATGAGCA-------------------------------------------GCAGGTAAAAAA-------A--CGTTTT------------------T--------------------A---TACCC----GTTACTC-------GTAGAGT-AAAAGGGTATATTGTA-TT-CGTTCA-------AAAGTATGTAACA-GCTAGAAGGAA-GCGTTTCCGACCCTATAAAGTATATAT--ATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCT----CTCCGTCCGTATGAACG----CT------------------GAGATCTCGGAAACT-----ATAAAAG
droBia1	scf7180000302402:2635132-2635373 -		AACAA---------------------ATTT-T------GGTATA----ACGATTTTGA---------A-----CCAC-----------------------------------AC------ATGAGCAGAGAATTTACCTCGC------TTG-------G------------------------------A--CATTTT------------------T--------------------A---TACCC----GTTACTC-------GTAGAAT-GAAAGGGTATACTAAA-TT-CGTCGG-------AAAGTATCTAACA-GGCAGAAGGAA-GCGTTTCCGACCCCATAAAGTGT------ATTTTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCG----------------TATGAACG----CT------------------GAGATCTTGGAAACT-----ATAAAAG
droTak1	scf7180000415703:118405-118668 +		TAAA-----------------AACAAATTC-AAAATATT------------------------------CCACATAC-TT-----TTTAGA--------TCCTTGAAGATCAAAAGG------TGA----------------------TTA-------T--------------------AGT-------T--TATAGT------------------T--------------------A---TACCC----GTTACTC-------GAAGAGT-AAAAGGGTATATTGTA-TT-CGTGCA-------AAAGTATGTAACA-GGGAGAAGGAA-GCGTTTCCGACCCCATAAAGTATATAT--ATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCT----GTCCGTCTGTATGAACG----CT------------------GAGATCTCAGAAACT-----ATAAAAG
droEug1	scf7180000408850:13494-13749 +		TATGG---------------CATAAAACTT-AAATAC-TGT--------------------------ATTAAAGGAG-GATAGCAC----------------------------------TGCAGCT-------------------------------------------GCTGGTCCTCTT-------A--CTTTAT------------------C--------------------A---TACCC----GTAACTC-------GTAGAGT-AAAAGGGTATACTAGA-TT-CGTTGA-------AAAGTATGTAACA-GATTGAAGGAA-GCGTTTCCGACCCAATAAAGAATATAT--ATTCTTGATCAGGATAAATAGCGAAGGCGATTGAGCCATGTCCGTCTGTGCGTCC--------GTCCGTATGAACG----CT------------------GAGATCTCAGGAACT-----ATAACAG
dm3	chr3L:22883623-22883884 +		AACGG---------------CAATAATGGCAAAAGATT--T--------------------------ATCGACCCTA-----------------------------------AAATGTACTCGAGTG--------------------TCGATCAA------------------------CTT-------T--ACTTTT------------------T--------------------A---TACCC----CTTACTC-------GTAGAGT-AAAAGGGTATACTAGA-TT-CGTTGA-------AAAGTATGTAACA-GGCACAAGAAA-GCGTTTCCGACTATATAAAGTCTATAT--ATTCTGGATCAAGATCAATAACTGAGTCGATCTAGCCCTTTCCGTCTGTCCG----------------TCTGAACG----TCGAGATATGTA--------CGAACCACAGGAACTACAATATAAAAG
droSim2	x:19874851-19875095 -		TTTAA---------------TA------------TGCCAGG--C----ACAATATTGTATCGATTGAGTGG----AA-AGATTTC------------------------------------------------------------TAAAAACG----------------------------G-------C--CATTTT------------------T--------------------A---TACCC----GTTACTC-------GTAGAGT-AAAAGGGTATACTAGA-TT-CGTTGA-------AGGGTATGTAACAAGGCAGAAGGAAGGCGTTTCCAACTATATAAAGTATACAA--GTTCTTGATCAGGATCAATAGCCGAGTCGGTCTAGCCATGTCCGTCTGTCCG----------------TATGAACG----TC------------------GAGATCTCAGAAGCT-----ATAAAAG
droSec2	scaffold_7341:213-453 +		TATAA---------------TGAAAGAA-----AAAATTGT--------------------------ACCCATATAT-TTA----TTT-----------------------------------TGA-------------TTA------TTG-------GCCGCAATCGGGAT--------------------GGGTGT------------------T--------------------A---TACCC----CTTACTC-------GTAGAGT-AAAAGGGTATACGAGA-TTCCGTTGA-------AAAGTATGTAACA-GGCAGAAGGAA-GTGTTTCCGACTATACATA--------------TAAATCAGGATCAATAGTCTAGTCGATCCGTC----------TTTCCAACTGTCCGTCTGTCCGTATGAACG----TC------------------GAAATCTCAGGAACT-----ATAATAG
droYak3	X:21643807-21644063 -		AATGCATACAAGATATAATGCGCTGCGT-CAAAATATCGTT--------------------------ACTTTTGCGG-TAAGT-A------------------------------------------------------------------------------------------------CTACACGTGTGAATATT------------------T--------------------A---TACCC----GTTACTC-------GTAGAGT-AAAAGGGTATACTAGA-TT-CGTTGA-------AAAGTATGTAACA-CGCAGAAGGAA-TCGTTTCCGACCATATAAAGTATATAT--ATTCTTGATCAGGATCAATAGCCGAGTCGATCTTGCCATGTCCGTCTGTCCG------------TCCGTATGAACG----TC------------------GAGATCTCAGGAACT-----ATAAAAG
droEre2	scaffold_4845:2335014-2335263 +		AATTA---------------TTAAAAATTT-CAATTGT--T--------------------------ATGAATCCGATGGTTGAGT----------------------------------TGTGTCC--------------G------TTG-----------------------------------------GCTTTGTTTA-------C------T--------------------T---TTATT----GATAATAA----A-ATAGAGT-AAAAGGGTTATCTAGA-TT-CGCTGA-------AAAGTATGTAACA-GACAGAAGGAA-ACGTTTTCGACCATATAAAGTATTTAT--ATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCCGTCTG------------TCCGTATGAACG----CC------------------TCGATCTCACGAACT-----ACACAAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AATGA---------------CAACAAGTTT-AAATGGTTGT--------------------------ACCGATGTAC-CAACGCCT----------------------------------TTGAGCG-------------------------------------------GTGAGTATTCAT-------T--TGTTTT------------------T--------------------A---TACCC----TGAACCCATTAAAA-ATGGGT-ATAAGGGTATATTGTA-TA-TGTGCAAAATCCAAATGTATGTAACA-GGCAGAAGGAA-GCATCTCCGACCCCATA-----------------TGATCAGCATAAATAGCCGAGTCGATCTAGCCATATCCGTCTGTCCG------------TATGTATGAATG----CA------------------AGGATCTTAGAACCT-----ATAAGAG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACA-GGCAGAAGG...............................................................................................................................................................	26	20	8.50	170	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	170	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACA-GGCAGAAG................................................................................................................................................................	25	20	6.65	133	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	114	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTAAAA-ATGGGT-ATAAGGGTATATTG.........................................................................................................................................................................................................	26	20	3.90	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................ATTCAT-------T--TGTTTT------------------T--------------------A---TACCC----TGAACCC......................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AGTTT-AAATGGTTGT--------------------------ACCG................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTATGTAACA-GGCAGAAGGAA-GCATC.......................................................................................................................................................	26	20	0.65	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATGAATG----CA------------------AGGATCTTAGAACC.............	28	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATGAATG----CA------------------AGGATCTTA..................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTATGTAACA-GGCAGAAGGAA-G...........................................................................................................................................................	22	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTATGTAACA-GGCAGAAGGAA-GCAT........................................................................................................................................................	25	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTATGTAACA-GGCAGAAGGAA-............................................................................................................................................................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTAAAA-ATGGGT-ATAAGGGT...............................................................................................................................................................................................................	20	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTAAAA-ATGGGT-ATAAGGGTA..............................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATGAATG----CA------------------AGGATCTTAT.................	24	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CATTAAAA-ATGGGT-ATAAGGGT...............................................................................................................................................................................................................	22	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGCCATATCCGTCTGTC.............................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TAACA-GGCAGAAGGAA-GCATC.......................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTATGAATG----CA------------------AGGATCTTAGAAT..............	27	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTCCG------------TATGTATGAATG----CA------------------AGGA.......................	29	16	0.13	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TATGTAACA-GGCAGAAGGAA-GCA.........................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATAAATAGCCGAGTCG..................................................................................................	24	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TAAAA-ATGGGT-ATAAGGGTATATTG.........................................................................................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TGTAACA-GGCAGAAGGAA-GCATCTCCG...................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AATCCAAATGTATGTAACA-GG......................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTATGTAACA-GGCAGAAGGA..............................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CAAATGTATGTAACA-GGCAGAAGG...............................................................................................................................................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACA-GGC.....................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TATGTAACA-GGCAGAAGGAA-GCAT........................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GAAGGAA-GCATCTCCGACCCC..............................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACA-GGCAGAAGGA..............................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TAAATAGCCGAGTCGATCTAGCC..........................................................................................	23	11	0.09	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCG------------TATGTATGAATG----C..............................................	25	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................ATGGGT-ATAAGGGTATATTGTA-TA-TG.................................................................................................................................................................................................	26	19	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TA-TGTGCAAAATCCAAATGTATGT.............................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CA-GGCAGAAGGAA-GCATCTCC....................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT........................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................ATGGGT-ATAAGGGTATATTGTA-TA-T..................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................T-ATAAGGGTATATTGTA-TA-T..................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TGAACCCATTAAAA-ATGGGT-ATAAGGG................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ATTGTA-TA-TGTGCAAAATCCAAATGT.................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTATGTAACA-GGCAGAAGGAA-GCATCTC.....................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................ATAAGGGTATATTGTA-TA-TG.................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................T--------------------A---TACCC----TGAACCCATTAAAA-ATGG..........................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGTATGTAACA-GGCAGAAGG...............................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AACA-GGCAGAAGGAA-GCATCTCC....................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................CAGAAGGAA-GCATCTCCGACC................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TAACA-GGCAGAAGGAA-GCATCTCCG...................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TGTAACA-GGCAGAAGGAA-GCATCTC.....................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TAAGGGTATATTGTA-TA-T..................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................A-GGCAGAAGGAA-GCATCTCCGACC................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ATTAAAA-ATGGGT-ATAAGGGTATAT...........................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCCG------------TATGTATGAATG----CA------------------AGG........................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................ACA-GGCAGAAGGAA-GCATCTC.....................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................ATGGGT-ATAAGGGTATATTGTA-TA-...................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................AATGTATGTAACA-GGCAGAAG................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................TGTATGTAACA-GGCAGAAGGA..............................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AACTT---------------TAT----------ATGTTTGTATCCCAT-------------GTCTTCATAAACGGAT-------------------------------------------TT-------------AAGTCTCTTGCGCTTACA----------------------------G-------T--TCTTAT------------------T--------------------A---TACCC----TGAACCCATTGAAA-ATGGGAAATCAGGGTATAATGGT-TT-TGTGAA-------AAAGTATGTAACG-GGCAGAAGGAG-GCGTGGCAGACCCCACAAAGTATATAT--ATTCTTGATCAGCGCGATGAGCTGAGTCGATATAGCCTTGTCCGTCTGTCCG----------------TATGAGTG----CG------------------TCGATCTCAGAAGAT-----ATAACAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................................................................................................................................................................................................................................GGCAGAAGGAG-GCGTGGCAG...................................................................................................................................................	20	20	0.30	6	6	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AGAAGGAG-GCGTGGCAGACC................................................................................................................................................	20	20	0.20	4	4	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................TAACG-GGCAGAAGGAG-GCGTGG......................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCCG----------------TATGAGTG----CG------------------TC.........................	21	16	0.06	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TGTAACG-GGCAGAAGGAG-GC..........................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................ATGGT-TT-TGTGAA-------AAAGTATGT.............................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................T--ATTCTTGATCAGCGCGATGG...........................................................................................................	21	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAGTG----CG------------------TCGATCTCAGAAG..............	23	20	0.05	1	1	0	0	0	0	0

droGri2

TAAT-----------------ATCAAGTTC-ATATGCAAGT--------------------------ATTAATTTAA-TAATTTTTCTAAACTGT-----------------------------------------------------T------------------------T-----ATC-------T--ACTTTT------------------T--------------------A---TACCC----TGAACGCATTAAAA-ATGGGTAAAAATGGTATAATGGT-TT-TGTGCA-------AATGTATGTAACA-GGCAGAAAGAA-GCATCTCCGATCCCATAAAGTATATAT--ATTCTTGATCAGGAT-AACAGCCGAACCGATATAGTCATGTCCGTCCGTCCGTTC--------ATCTGTATGAAAA----CG------------------CAGATCGCAGAGACC-----ATAAGAG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AATGA---------------TGATAAATTG-A--------TAAATGTT-------------AGCTGAATGAACGTAA-AA------------GATTAGT---------------C------------------------------TGCATACA---------------------------------------GATTTT------------------T--------------------A---TACCA----TACACCC-------ATAGGGT-GAAATGGTATATTAAA-GT-CGCCAA-------AATGTATGTAACA-GGCAGAAGGAA-GCATCTCCGACCCCACAAAGTATATAT--ATTCCTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGTCCGTATGAACA----CC------------------TAGATCTCGGAGACT-----ATAAGAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................................................................................................................................................AACAACCGAGTCGATCTAGCCATGT......................................................................................	25	20	0.30	6	0	6	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GAACA----CC------------------TAGATCTCGGAGA..............	20	20	0.20	4	0	0	4	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCCGTCCGTCCG...................................................................	21	20	0.15	3	0	3	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AACAACCGAGTCGATCTAGCCATGTCCG...................................................................................	28	20	0.15	3	0	3	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CTGATCAGGATCAACAACCGAG.....................................................................................................	22	8	0.13	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCCGTCCGTCCGTATGAACA----CC------------------G..........................	28	20	0.10	2	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCCGTATGAACA----CC------------------TAGATC.....................	28	20	0.10	2	0	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTCCGTCCGTC.................................................................	24	20	0.10	2	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AT--ATTCCTGATCAGGATC...............................................................................................................	18	15	0.07	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCCGTCCGTCCGTA.........................................................	22	20	0.05	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGTCCGTCC........................................................................	19	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................A-GGCAGAAGGAA-GCATCTCC....................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................AGGATCAACAACCGAGTCGA.................................................................................................	20	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCCGTCCGTATGAACA----...............................................	21	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGTCCGTCC....................................................................	22	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................TAAA-GT-CGCCAA-------AATGTATGTAACA-GGC.....................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCCGTCCGTATGAACA----CC------------------TAGATC.....................	27	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTCCGTC.....................................................................	18	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACA----CC------------------TAGATCTCGGAGACT-----AT.....	27	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................ATTAAA-GT-CGCCAA-------AATGTATGT.............................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0

dp5

AATGA---------------AAA---AC---------------------------------------------GGA----GCCTGC-----------------------------------------------------------------CTGATTGT---------------------------------ATTTTATATATCATGTCTTTGTGTTGA--TAATTAAAAAGTTTTTAAGTTACCC----GATACTCA----AA-ATGAGT-ATAGGGGTATATTAGA-TT-TGTGGTAAAAGTGGATGTGTGTAACG-TCCAGAAGGAC-GCGTTTCCGACCCCATAAGGTATATAT--ATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCC--------GTCTGCCTGTACG----T-------------------------------ACT------TTAGAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................TT-TGTGGTAAAAGTGGATGTG................................................................................................................................................................................	21	20	12.75	255	0	0	0	0	0	0	255	0	0	0
.................................................................................................................................................................................................................................................................................................TT-TGTGGTAAAAGTGGATG..................................................................................................................................................................................	19	20	9.30	186	0	186	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TATAT--ATTCTTGATCAGCATC...............................................................................................................	21	20	3.15	63	0	63	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCG...........................................................................	21	20	2.45	49	0	49	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGTA............................................................................................................................................................................	21	20	1.60	32	0	16	0	0	0	0	0	0	16	0
............................................................................................................................................................................................................................................................................................TAGA-TT-TGTGGTAAAAGTGGA....................................................................................................................................................................................	21	20	1.50	30	0	0	0	0	0	0	0	0	30	0
...............................................................................................................................................................................................................................................................................................A-TT-TGTGGTAAAAGTGGATGT.................................................................................................................................................................................	21	20	0.90	18	0	18	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................T-TGTGGTAAAAGTGGATG..................................................................................................................................................................................	18	20	0.90	18	0	18	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAG.....................................................................................................	22	20	0.75	15	0	0	15	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TT-TGTGGTAAAAGTGGATGTGTGT.............................................................................................................................................................................	24	20	0.75	15	0	0	15	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................AAAAGTGGATGTGTGTAACG-T.......................................................................................................................................................................	21	20	0.70	14	0	0	0	0	0	0	14	0	0	0
................................................................................................................................................................................................................................................................................................................................................................ATATAT--ATTCTTGATCAGCA.................................................................................................................	20	20	0.55	11	0	11	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATTGAGCCATGTCT....................................................................................	21	20	0.55	11	0	10	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGAT................................................................................................	27	20	0.55	11	0	0	0	0	0	0	0	0	11	0
....................................................................................................................................................................................................................................................................................................................GTGTGTAACG-TCCAGAAGG...............................................................................................................................................................	19	20	0.55	11	0	11	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TTAGA-TT-TGTGGTAAAAGTGG.....................................................................................................................................................................................	21	20	0.50	10	0	0	0	0	0	0	0	10	0	0
.........................................................................................................................................................................................................................................................................................................TAAAAGTGGATGTGTGTAAC..........................................................................................................................................................................	20	20	0.45	9	0	0	0	0	0	0	0	0	9	0
...............................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCCATGTC.....................................................................................	19	20	0.45	9	0	9	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCC............................................................................	20	20	0.40	8	0	0	0	0	0	0	0	8	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTGTCCGTCC--------GTC.............................................................	19	20	0.40	8	0	8	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TT-TGTGGTAAAAGTGGATGT.................................................................................................................................................................................	20	20	0.30	6	0	0	0	0	6	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCC........................................................................................................	22	20	0.30	6	0	6	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................TTAGA-TT-TGTGGTAAAAGTG......................................................................................................................................................................................	20	20	0.25	5	0	0	0	0	0	0	0	0	5	0
.............................................................................................................................................................................................................................................................................................AGA-TT-TGTGGTAAAAGTGGAT...................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	3	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCTGTCCGTCC--------GTC.............................................................	20	20	0.15	3	0	0	0	0	0	0	0	2	1	0
..TGA---------------AAA---AC---------------------------------------------GGA----GCCTGC-----------------------------------------------------------------CTGA............................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................GATACTCA----AA-ATGAGT-ATAGGG.................................................................................................................................................................................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATTGAG............................................................................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCCATGTCTGTCTGTC.............................................................................	21	20	0.15	3	0	0	0	0	0	0	3	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTCC--------GTC.............................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GCCATGTCTGTCTGTCCGTCC--------................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................C----GATACTCA----AA-ATGAGT-ATAGGG.................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................TCGATTGAGCCATGTCTGT..................................................................................	19	20	0.10	2	0	0	0	0	0	0	2	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTGAGCCATGTC.....................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCCGAGTCGATTG..............................................................................................	21	20	0.10	2	0	0	0	0	0	2	0	0	0	0
............................................................................................................................................................................................................................................................TACTCA----AA-ATGAGT-ATAGGGGTA..............................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TCA----AA-ATGAGT-ATAGGGGTAT.............................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATTG..............................................................................................	19	20	0.10	2	0	0	0	0	0	0	2	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATTGA.............................................................................................	21	20	0.10	2	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCTGTCCGTCC--------GTCT............................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCTGTCTGTCCGTC.........................................................................	19	20	0.10	2	0	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................A-TT-TGTGGTAAAAGTGGAT...................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TATATAT--ATTCTTGATCAGCA.................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	2	0	0	0
.............................................................................................................................................................................................................................................................................GT-ATAGGGGTATATTAGA-TT-TG.................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TCA----AA-ATGAGT-ATAGGGGTATAT...........................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCCATGTC.....................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	2	0
........................................................................................................................................................................................................................................................................................................................................................................................................GAGCCATGTCTGTCTGTCCGT..........................................................................	21	20	0.10	2	0	0	0	0	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GTTTCCGACCCCATAAGGTAT.....................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTCC--------GTCT............................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATTGAGCCATGTCTGTCTG...............................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATTGAGCCATGTC.....................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................A----AA-ATGAGT-ATAGGGGTATATTAG........................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGTCC--------G...............................................................	25	20	0.05	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTCC--------GTCTG...........................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TACTCA----AA-ATGAGT-ATAGGGGTAT.............................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AA-ATGAGT-ATAGGGGTATATTAGA-......................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................A-TT-TGTGGTAAAAGTGGA....................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATTGAGCCA.........................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGTCTGTCCGTC.........................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGA......................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................ATAGGGGTATATTAGA-TT-TGT................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................CTCA----AA-ATGAGT-ATAGGGGTATAA...........................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAGCATCAATAGCCGAGTCGATTGAGC...........................................................................................	27	20	0.05	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCGTCC--------GTCTG...........................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TACTCA----AA-ATGAGT-ATAGGG.................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TAGGGGTATATTAGA-TT-TGTGG..............................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................TACTCA----AA-ATGAGT-ATAGG..................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GATCAGCATCAATAGCCGAGTCGATT...............................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CA----AA-ATGAGT-ATAGGGGTATATT..........................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCCATGTCTGTCTG...............................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...GA---------------AAA---AC---------------------------------------------GGA----GCCTGC-----------------------------------------------------------------CTG.............................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.ATGA---------------AAA---AC---------------------------------------------GGA----GCCTGC-----------------------------------------------------------------CTGA............................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................T--ATTCTTGATCAGCATCAATA...........................................................................................................	21	20	0.05	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCATGTCTGTCTGTCCGTCC--------GTC.............................................................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................GTAAAAGTGGATGTGTGTAACG-TCCA....................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GCATCAATAGCCGAGTCGATTGAGC...........................................................................................	25	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

GAGCA---------------TAT----------ATATTAATA--------------------------CATATATAC-----------------------------------ATATG------TACATCT-----AACCCTC------TTG-------GACGCAA------TAA-------CTACACATATAACTCAT------------------T--------------------A---TACCC----GATACTCA----TA-ATGAGT-ATTGGGGTATATTAGA-TT-TGTGGTAAAAGTGTATGTGTGTAACG-TCCAGAAGGAA-TCGTTTCCGACCCCATAAAGTATATAT--ATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCTGTCTGTCCGTCC--------GTCCGTCTGTCCG----TC------TGTCTGAGTTCAAGGATCTCAGAACCC-----ATAAGAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................TAA-------CTACACATATAACTCAT------------------T--------------------A---TACC..................................................................................................................................................................................................................................................	26	4	0.50	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCATGTCTGTC.................................................................................	19	20	0.30	6	0	0	0	0	0	6
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCAAGGATCTCAGAACCC-----ATAAGA.	27	20	0.25	5	0	5	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCCATGTC.....................................................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAGGATCTCAGAACCC-----AT.....	20	20	0.05	1	0	0	0	0	1	0
.................................................................................................................TATG------TACATCT-----AACCCTC------TTG-------GAC......................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................GGGGTATATTAGA-TT-TGTGGTAAAAGT.......................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0

droAna3

TTACC---------------TAA----------CTGC------------------------------AAGGGTGTAT-CA------------ACTTCGG---------------CT----CCGCCC-----------------------------------------GAAGTAAGATTTCCT-------T--TCTTGT------------------T--------------------A---TACCC----TT------------GC-------AGAGGGTATTATAAT-TT-TGGTCA-------AAAGTGTGCAACG-CAGTGAAGGAG-ACATCTCCGACCCTATAAAGTATATAT--AT--GTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCG----------------TTTCTACGCAAACT------------------AGTCTCTCAG----T-----TTTAAAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................AGTGTGCAACG-CAGTGAAGGAG-ACA.........................................................................................................................................................	25	20	0.45	9	0	0	9	0	0	0
.....................................................................................................................................................................................................................................................................................................................TGTGCAACG-CAGTGAAGGAG-ACAT........................................................................................................................................................	24	20	0.40	8	8	0	0	0	0	0
........................................................................TGTAT-CA------------ACTTCGG---------------CT----CCGCC..........................................................................................................................................................................................................................................................................................................................................................................	21	18	0.33	6	2	3	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................TGTGCAACG-CAGTGAAGGAG-ACATCT......................................................................................................................................................	26	20	0.25	5	0	0	5	0	0	0
...............................................................................................................................................................................................................................................................................................T-TT-TGGTCA-------AAAGTGTGCAAC..........................................................................................................................................................................	21	20	0.20	4	0	4	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CG-CAGTGAAGGAG-ACATCTCCG...................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	3
....................................C------------------------------AAGGGTGTAT-CA------------ACTTCGG---------------C....................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	3	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................ACG-CAGTGAAGGAG-ACATCT......................................................................................................................................................	20	20	0.15	3	3	0	0	0	0	0
........................................................................TGTAT-CA------------ACTTCGG---------------CT----CCGCCC-----------------------------------------GAAGT...........................................................................................................................................................................................................................................................................................................................	27	16	0.13	2	0	2	0	0	0	0
........................................................................TGTAT-CA------------ACTTCGG---------------CT----CCGCCC-----------------------------------------................................................................................................................................................................................................................................................................................................................................	22	18	0.11	2	0	2	0	0	0	0
...................................................................AAGGGTGTAT-CA------------ACTTCGG---------------CT----...............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTCCGTCTGTCCG----------------TT.........................................................	20	20	0.10	2	0	0	0	0	0	2
........................................................................TGTAT-CA------------ACTTCGG---------------CT----CCGCCC-----------------------------------------G...............................................................................................................................................................................................................................................................................................................................	23	16	0.06	1	0	1	0	0	0	0
........................................................................TGTAT-CA------------ACTTCGG---------------CT----CCGCCC-----------------------------------------GA..............................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	0	1	0	0	0	0
.........................................................................GTAT-CA------------ACTTCGG---------------CT----CCGCCC-----------------------------------------G...............................................................................................................................................................................................................................................................................................................................	22	18	0.06	1	0	0	0	0	0	1
..................................TGC------------------------------AAGGGTGTAT-CA------------ACTTCGG---------------CT----C..............................................................................................................................................................................................................................................................................................................................................................................	25	19	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................T-TT-TGGTCA-------AAAGTGTGCAACG-........................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................TT-TGGTCA-------AAAGTGTGCAACG-........................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..................................TGC------------------------------AAGGGTGTAT-CA------------ACTTCGG---------------CT----...............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.....................................................................GGGTGTAT-CA------------ACTTCGG---------------CT----C..............................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.................................CTGC------------------------------AAGGGTGTAT-CA------------ACTTC......................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................TATGAGCATGTCCGTCTGTCCG----------------TTA........................................................	25	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................ATATGAGCATGTCCGTCTGTCC............................................................................	22	20	0.05	1	0	1	0	0	0	0
....................................................................AGGGTGTAT-CA------------ACTTCGG---------------C....................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...................................................................AAGGGTGTAT-CA------------ACTTCGG---------------.....................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
........................................................................TGTAT-CA------------ACTTCGG---------------CT----CCG............................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................ATCTCCGACCCTATAAAGT.......................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
........................................................................TGTAT-CA------------ACTTCGG---------------CT----CCGC...........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droBip1

TAAAT---------------GATTGATC-----------------------------------------GGAAATGC-CA--------------------------------AAACT------T------------------------T--------------------------------G-------G--TGTTTT------------------T--------------------A---TAACC----GGTACTT-------GTAGAGT-ATAAGTGTATAATTGTAGT-CGGTG--------AATGTATGTACCA-TAGAGAAGGAA-TCATCTCCGGCCCCATAAAGTA--------TTCTTGATCAGCATCAACAGCCTAGTCGACATAGCCATGTCCGTCTGTCCG----------------TATGAACG----CG------------------TGGATCTCAGAGACT-----ATAAGAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AATTT---------------CAAAAAATTT-AAATCGAT------------------------------CCATA------ATCTATCTAAGGTAT-----------------------------------------------------T--------------------------------T-------A--TTTTTT------------------T--------------------A---TACCC----TT---------------------GCAGGGTATTATAAT-TT-CAGTCA-------GAAGTTTGCAACG-CAGTGAAGGAG-ACGTTTCCGACCCTATAAAGTATAGAT--ATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCTGTCTGTCTGTCT--------GTCTGTTTCTACGCAAACT------------------AGTCCCTCAG----T-----TTTAAAG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACCT---------------CGGTGATC-CAAAACGTTTGT--------------------------ACCCTTGCAG-TTAAA-A------------------------------------------------------CTTTAGCCTATGAAGA---------------------TTTTTC-------T--TTTTGT------------------TAAATCTATT-----------A---AAACA----ACAAATTATTAAAT-ATTGAA-GTAAGTGCAG-----A-AA-TGTTTAAAATCGAAAAGTATGTAACA-GGTTGAAGGGA-GCCCTTACAACCCTCTGTAGTATATATAGATTTTTGATCAGGATCATCAGACAAGTCGATCTATGTATGTCTGTCTGTCTG----------------TTTAGAAT---ATT------------------GGGA---------C--------TAGAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGTAT---------------AA-----------GTATAAGT--------------------------ATGGATATAA-----------------------------------AAATG------TGAGGAG-----GACTAAC------TTG-------T---------------------------------ACTTTG------------------T--------------------A---TACTCTGCCGCTCCACA----A-GTAGAGT-AAAAGGGTATATTATA-TT-CGTTGA-------AAAGTATGTGACA-GGTAGAAAGAA-GCGTATCCGACAATATAAAGTATATAT--ATTTTTAATCAGGATCAATAGCCGAATCGATCTAGACATGTCCGTCTGTCTGTCC--------GTCTGTATGAACG----TC------------------GAGATCTCGGAAACT-----ATTAAAG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAGGA---------------CAATAAATG-------G-------------------------------CCTATACAA-AAAATTCT----------------------------------ATGAGCA-------------------------------------------GCAGGTAAAAAA-------A--CGTTTT------------------T--------------------A---TACCC----GTTACTC-------GTAGAGT-AAAAGGGTATATTGTA-TT-CGTTCA-------AAAGTATGTAACA-GCTAGAAGGAA-GCGTTTCCGACCCTATAAAGTATATAT--ATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCT----CTCCGTCCGTATGAACG----CT------------------GAGATCTCGGAAACT-----ATAAAAG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACAA---------------------ATTT-T------GGTATA----ACGATTTTGA---------A-----CCAC-----------------------------------AC------ATGAGCAGAGAATTTACCTCGC------TTG-------G------------------------------A--CATTTT------------------T--------------------A---TACCC----GTTACTC-------GTAGAAT-GAAAGGGTATACTAAA-TT-CGTCGG-------AAAGTATCTAACA-GGCAGAAGGAA-GCGTTTCCGACCCCATAAAGTGT------ATTTTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCG----------------TATGAACG----CT------------------GAGATCTTGGAAACT-----ATAAAAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAAA-----------------AACAAATTC-AAAATATT------------------------------CCACATAC-TT-----TTTAGA--------TCCTTGAAGATCAAAAGG------TGA----------------------TTA-------T--------------------AGT-------T--TATAGT------------------T--------------------A---TACCC----GTTACTC-------GAAGAGT-AAAAGGGTATATTGTA-TT-CGTGCA-------AAAGTATGTAACA-GGGAGAAGGAA-GCGTTTCCGACCCCATAAAGTATATAT--ATTCTTGATCAGGATCACTAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCT----GTCCGTCTGTATGAACG----CT------------------GAGATCTCAGAAACT-----ATAAAAG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TATGG---------------CATAAAACTT-AAATAC-TGT--------------------------ATTAAAGGAG-GATAGCAC----------------------------------TGCAGCT-------------------------------------------GCTGGTCCTCTT-------A--CTTTAT------------------C--------------------A---TACCC----GTAACTC-------GTAGAGT-AAAAGGGTATACTAGA-TT-CGTTGA-------AAAGTATGTAACA-GATTGAAGGAA-GCGTTTCCGACCCAATAAAGAATATAT--ATTCTTGATCAGGATAAATAGCGAAGGCGATTGAGCCATGTCCGTCTGTGCGTCC--------GTCCGTATGAACG----CT------------------GAGATCTCAGGAACT-----ATAACAG	Size	Hit Count	Total Norm	Total
No Reads

dm3

AACGG---------------CAATAATGGCAAAAGATT--T--------------------------ATCGACCCTA-----------------------------------AAATGTACTCGAGTG--------------------TCGATCAA------------------------CTT-------T--ACTTTT------------------T--------------------A---TACCC----CTTACTC-------GTAGAGT-AAAAGGGTATACTAGA-TT-CGTTGA-------AAAGTATGTAACA-GGCACAAGAAA-GCGTTTCCGACTATATAAAGTCTATAT--ATTCTGGATCAAGATCAATAACTGAGTCGATCTAGCCCTTTCCGTCTGTCCG----------------TCTGAACG----TCGAGATATGTA--------CGAACCACAGGAACTACAATATAAAAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGTA--------CGAACCACAGGAAC.............	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TT-CGTTGA-------AAAGTATGTAACA-GGC.....................................................................................................................................................................	24	20	4.80	96	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	3	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	11	6	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	15	0	0	0	0	0	0	0	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCG----------------TCTGAACG----TCGAGA.........................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................T-CGTTGA-------AAAGTATGTAACA-GGC.....................................................................................................................................................................	23	20	3.05	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	2	0	0	0	2	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGTA--------CGAACCACAGGAACTACAA........	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................C-------GTAGAGT-AAAAGGGTATACT..........................................................................................................................................................................................................	21	20	2.25	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TT-CGTTGA-------AAAGTATGTAACA-GG......................................................................................................................................................................	23	20	2.05	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................AGA-TT-CGTTGA-------AAAGTAT...............................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................ACTC-------GTAGAGT-AAAAGGGTATACT..........................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................AAGGGTATACTAGA-TT-CGTTGA-------AAA...................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSim2

TTTAA---------------TA------------TGCCAGG--C----ACAATATTGTATCGATTGAGTGG----AA-AGATTTC------------------------------------------------------------TAAAAACG----------------------------G-------C--CATTTT------------------T--------------------A---TACCC----GTTACTC-------GTAGAGT-AAAAGGGTATACTAGA-TT-CGTTGA-------AGGGTATGTAACAAGGCAGAAGGAAGGCGTTTCCAACTATATAAAGTATACAA--GTTCTTGATCAGGATCAATAGCCGAGTCGGTCTAGCCATGTCCGTCTGTCCG----------------TATGAACG----TC------------------GAGATCTCAGAAGCT-----ATAAAAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................TACTC-------GTAGAGT-AAAAGGGTA..............................................................................................................................................................................................................	21	20	7.35	147	0	0	0	0	147	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TCCG----------------TATGAACG----TC------------------GAGATCTCAGA................	25	19	2.26	43	0	0	10	0	0	0	19	4	5	4	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................TT-CGTTGA-------AGGGTATGTAACAAGGC.....................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TT-CGTTGA-------AGGGTATGTAACAAGGCAGA..................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGGT................................................................................................	23	2	1.50	3	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGGTC...............................................................................................	24	2	1.50	3	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGG.................................................................................................	21	2	1.50	3	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................GATCAGGATCAATAGCCGAGTCGGT................................................................................................	25	2	1.50	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TAGAGT-AAAAGGGTATACTAGA-TT-CGT................................................................................................................................................................................................	27	20	1.45	29	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GGGTATACTAGA-TT-CGTTGA-------AGGGTA................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................TGTAACAAGGCAGAAGGAAGGCGTT.......................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGGTC...............................................................................................	23	2	1.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGAGTCGG.................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATACTAGA-TT-CGTTGA-------AGGGC.................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGAGTCGGT................................................................................................	26	2	1.00	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TATGTAACAAGGCAGAAGGAAGGCG.........................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGGTCTAGCCATGTCCGTCT................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................A-------AGGGTATGTAACAAGGCAGAAGGTT.............................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGGT................................................................................................	27	2	1.00	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................A-------AGGGTATGTAACAAGGCAGAAGG...............................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TT-CGTTGA-------AGGGTATGTAACAAGGCA....................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCG----------------TATGA......................................................	25	20	0.85	17	0	0	0	0	0	0	5	7	1	4	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................ACTAGA-TT-CGTTGA-------AGGGTAT...............................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGTC...................................................................................................	26	20	0.50	10	0	1	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGGTCTAGC...........................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGGTC...............................................................................................	28	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGGT................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------GAGATCTCAGAAGCT-----ATAAAAG	23	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCGG.................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCGAGTCGGT................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCG----------------TATGAAC....................................................	27	20	0.40	8	0	0	0	0	0	0	0	0	6	2	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCG----------------TATG.......................................................	24	20	0.40	8	0	0	0	0	0	0	2	3	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCCG----------------TATGAACG----TC------------------GAGATCTCAGA................	26	13	0.38	5	0	0	0	0	0	0	3	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCG----------------TATGAA.....................................................	28	20	0.35	7	0	0	0	0	0	0	0	2	3	2	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCG----------------TATG.......................................................	26	20	0.35	7	0	0	1	0	0	0	2	3	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCCG----------------TATGAACG----TC------------------GA.........................	25	20	0.35	7	0	0	0	0	0	0	0	4	3	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCG----------------TATGAACG----TC------------------GAGA.......................	26	20	0.30	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCG----------------TATGAACG----...............................................	28	20	0.30	6	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGGTC...............................................................................................	16	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCG----------------TATGAACG----TC------------------...........................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCG----------------TATGA......................................................	27	20	0.20	4	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCG----------------TATGAACG----TC------------------...........................	16	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATCAGGATCAATAGC.........................................................................................................	22	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGTCCG----------------TATGAACG----T..............................................	27	20	0.20	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGTCCG----------------TATGAAC....................................................	25	20	0.20	4	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGTCCG----------------TATGAACG----TC------------------GAGA.......................	24	20	0.15	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TTT------------------T--------------------A---TACCC----GTTACTC-------GTAGAGT-.......................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCG----------------TATGAACG----TC------------------GAGATC.....................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCG----------------TATGAA.....................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTC...................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCG----------------TATGAA.....................................................	26	20	0.10	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCTAGCCATGTCCGTCTGTCCG----------------TA.........................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
..................................................................................................................................................................................................TTTT------------------T--------------------A---TACCC----GTTACTC-------GTAGAGT-.......................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCG----------------TATGAACG----T..............................................	29	20	0.10	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCCG----------------TATGAACG----TC------------------GA.........................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GTTCTTGATCAGGATC...............................................................................................................	16	15	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TCCG----------------TATGAACG----TC------------------GAGATCTCAGAT...............	26	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCG----------------TATGAACG----...............................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCG----------------TAT........................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................GAGT-AAAAGGGTATACT..........................................................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................GAGT-AAAAGGGTATAC...........................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCCG----------------TATGAACG----TC------------------GAGATCTCAG.................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................GTCCG----------------TATGAACG----TC------------------GAGATCT....................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................TT------------------T--------------------A---TACCC----GTTACTC-------GTAGAGT-AAA....................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCTGTCCG----------------TATG.......................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATGTCCGTCTGTCCG----------------TATGAACG----TC------------------...........................	30	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GCCATGTCCGTCTGTCCG----------------TATGAACG----TC------------------GA.........................	30	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCG----------------TATGAACG----TC------------------G..........................	17	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................TCCG----------------TATGAACG----TC------------------GAGA.......................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCG----------------TATGAACG----T..............................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGTCCG----------------TATGAACG----...............................................	25	20	0.05	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TTTT------------------T--------------------A---TACCC----GTTACTC-------G..............................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCTGTCCG----------------TATGAACG----...............................................	29	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCG----------------TATGAACG----TC------------------GAGA.......................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................TTT------------------T--------------------A---TACCC----GTTACTC-------GTAGAGT-A......................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCG----------------TATGAACG----TC------------------GA.........................	27	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

TATAA---------------TGAAAGAA-----AAAATTGT--------------------------ACCCATATAT-TTA----TTT-----------------------------------TGA-------------TTA------TTG-------GCCGCAATCGGGAT--------------------GGGTGT------------------T--------------------A---TACCC----CTTACTC-------GTAGAGT-AAAAGGGTATACGAGA-TTCCGTTGA-------AAAGTATGTAACA-GGCAGAAGGAA-GTGTTTCCGACTATACATA--------------TAAATCAGGATCAATAGTCTAGTCGATCCGTC----------TTTCCAACTGTCCGTCTGTCCGTATGAACG----TC------------------GAAATCTCAGGAACT-----ATAATAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTATGAACG----TC------------------...........................	24	20	0.10	2	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTATGAACG----TC------------------GAAATC.....................	28	20	0.05	1	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CGTC----------TTTCCAACTGTCCGTCTGTCCG...........................................................	26	20	0.05	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACG----TC------------------GAAATCTCAGGAACT-----A......	25	20	0.05	1	1	0	0	0
................................................................................................................................................................................................................................................................C-------GTAGAGT-AAAAGGGTATA............................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTGTCCGTATGAACG----TC------------------GAAATCT....................	28	20	0.05	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAACTGTCCGTCTGTCCGTATGA......................................................	27	20	0.05	1	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTATGAACG----TC------------------GAAATC.....................	20	20	0.05	1	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................GTC----------TTTCCAACTGTCCGTCTGTCCGTA.........................................................	27	20	0.05	1	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................CCAACTGTCCGTCTGTCCGTATG.......................................................	23	20	0.05	1	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTATGAACG----TC------------------GAAATCTA...................	22	20	0.05	1	1	0	0	0

droYak3

AATGCATACAAGATATAATGCGCTGCGT-CAAAATATCGTT--------------------------ACTTTTGCGG-TAAGT-A------------------------------------------------------------------------------------------------CTACACGTGTGAATATT------------------T--------------------A---TACCC----GTTACTC-------GTAGAGT-AAAAGGGTATACTAGA-TT-CGTTGA-------AAAGTATGTAACA-CGCAGAAGGAA-TCGTTTCCGACCATATAAAGTATATAT--ATTCTTGATCAGGATCAATAGCCGAGTCGATCTTGCCATGTCCGTCTGTCCG------------TCCGTATGAACG----TC------------------GAGATCTCAGGAACT-----ATAAAAG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................AAGTATGTAACA-CGCAGAAGG...............................................................................................................................................................	21	7	1.29	9	0	9	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TTGCCATGTCCGTCTGTCCG------------TCCGT..........................................................	25	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TTGCCATGTCCGTCTGTCCG------------TCC............................................................	23	2	1.00	2	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCG------------TCCGTATGAACG----TC------------------GA.........................	28	20	0.60	12	0	0	0	0	0	0	0	0	0	0	12
......................................................................................................................................................................................................................................................................................................................................................................................................TCTTGCCATGTCCGTCTGTCCG------------TCC............................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TTGCCATGTCCGTCTGTCCG------------TCCG...........................................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................TTGCCATGTCCGTCTGTCCG------------TC.............................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................GA-------AAAGTATGTAACA-CGCAGA..................................................................................................................................................................	21	8	0.38	3	0	3	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTATGTAACA-CGCAGAAGGAA-............................................................................................................................................................	21	11	0.36	4	0	4	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................AAAGTATGTAACA-CGCAGAAGG...............................................................................................................................................................	22	7	0.29	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACA-CGCAGA..................................................................................................................................................................	20	8	0.25	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................A-------AAAGTATGTAACA-CGCAGAA.................................................................................................................................................................	21	8	0.25	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................AAAGTATGTAACA-CGCAGAAG................................................................................................................................................................	21	9	0.22	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTTGCCATGTCCGTCTGTCCG------------...............................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCTTGCCATGTCCGTCTGTCC............................................................................	21	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................AGTATGTAACA-CGCAGAAGGA..............................................................................................................................................................	21	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TATT------------------T--------------------A---TACCC----GTTACTC-------GTAGAGT-.......................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTATGTAACA-CGCAGAAGGA..............................................................................................................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ATGTAACA-CGCAGAAGGAA-............................................................................................................................................................	19	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GT-AAAAGGGTATACTAGA-TT-...................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................GTATGTAACA-CGCAGAAGGAA-A...........................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AATTA---------------TTAAAAATTT-CAATTGT--T--------------------------ATGAATCCGATGGTTGAGT----------------------------------TGTGTCC--------------G------TTG-----------------------------------------GCTTTGTTTA-------C------T--------------------T---TTATT----GATAATAA----A-ATAGAGT-AAAAGGGTTATCTAGA-TT-CGCTGA-------AAAGTATGTAACA-GACAGAAGGAA-ACGTTTTCGACCATATAAAGTATTTAT--ATTCTTGATCAGGATCAATAGCCGAGTCGATCTGGCCATGTCCGTCCGTCTG------------TCCGTATGAACG----CC------------------TCGATCTCACGAACT-----ACACAAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................GAATCCGATGGTTGAGT----------------------------------TGTGTC.........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................GACAGAAGGAA-ACGTTTTCGACCATATA...........................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGAGTCGATC...............................................................................................	27	20	0.40	8	0	0	0	0	0	0	8
............................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGT....................................................................................................	23	20	0.25	5	0	0	0	0	0	0	5
.......................................................................................................................................................................................................................................................................................................TGA-------AAAGTATGTAACA-GACAA...................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTGGCCATGTCCGTCCGTCT............................................................................	25	20	0.05	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCG.......................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATC...............................................................................................	24	20	0.05	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTGGCC..........................................................................................	28	20	0.05	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCTG------------TCCGTATGAACG----CC------------------...........................	26	20	0.05	1	1	0	0	0	0	0	0

dvi_21656

scaffold_13324:2542469-2542619 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-7.2	-7.0	-6.9

TTACTGTTGTTCAAATTTACCAACATGGCTACATGGTTGCGGAAACTCGCCACTCATAAGTAAACAAAAATATGGGACTTGGGTAATTTTTACCCATATTCCCATATAACATATACACGTTTTAGGTTTACATACATTGTCCGTCTTCCTTCGTAGAGGCTGGGGTATACTAGTCGTATTTATCGGCTCAGCTAGATCGGTATAGGCAGACAGGCATACATACTTACGTTCCTAGAATCTTGGATATTCTC ****************************************************************************************************.......((.(((((.((((...(((((....))))).))))...))))).))............**********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060678 9x140_testes_total	SRR060679 140x9_testes_total	SRR060681 Argx9_testes_total	SRR060680 9xArg_testes_total	SRR060675 140x9_ovaries_total	SRR060684 140x9_0-2h_embryos_total	SRR060670 9_testes_total	SRR060655 9x160_testes_total	SRR060657 140_testes_total	SRR060674 9x140_ovaries_total	SRR060683 160_testes_total	SRR060658 140_ovaries_total	SRR060676 9xArg_ovaries_total	SRR060673 9_ovaries_total	SRR060656 9x160_ovaries_total
...........................................................................................................AACATATACACGTTTTAGGTTTACAT......................................................................................................................	26	0	20	1.40	28	0	0	0	0	0	21	0	0	0	5	0	0	2	0	0
........................................................................................................................................................................................................TATAGGCAGACAGGCATACATACTT..........................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TACATGGTTGCGGAAACTCGCCACT.....................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................ATAGGCAGACAGGCTTACATACTTAC........................	26	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TGGGGTATACTAGTCGTATTTATCGGCT...............................................................	28	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................TGGTTGCGGAAACTCGCCACTCATAAGT..............................................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CATGGTTGCGGAAACTCGCCACTCAT..................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TACGTTCCTAGAATCTTGGATATTCT.	26	0	2	1.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTATAGGCAGACAGGCATACAT..............................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................CTGGGGTATACTAGTCGT..........................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTTAGGCAGACAGGCATACATACTT..........................	25	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................ATAGGCAGACAGGCTTACATACTTACG.......................	27	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AACATGGCTACATGGTTGCGGAAACT............................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................GTAGAGGCTGGGGTATACTAGTCGT..........................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CATGGCTACATGGTTGCGGAAACTCG..........................................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................GGCTGGGGTATACTAGTCGT..........................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...CTGTTGTTCAAATTTACCAACATGGCT.............................................................................................................................................................................................................................	27	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................AGGCTGGGGTATACTAGTCGT..........................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................GGCTGGGGTATACTAGTCGTA.........................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................GCTGGGGTATACTAGTCGT..........................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................TGGTTGCGGAAACTCGCCACTCATA.................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GTTGCGGAAACTCGCCACTCATAAGT..............................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TACTTACGTTCCTAGAATCTTGGAT......	25	0	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TACATACTTACGTTCCTAGAATCTT..........	25	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTATAGGCAGACAGGCTTACATACT...........................	25	1	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TACATACTTACGTTCCTAGAATCT...........	24	0	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GGTATAGGCAGACAGGCTTACAT..............................	23	1	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TAGGCAGACAGGCATACATACTT..........................	23	0	7	0.43	3	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................TATAGGCAGACAGGCTTACATACTT..........................	25	1	3	0.33	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TAGTCGTATTTATCGGCTCAGCTAGA.......................................................	26	0	9	0.22	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTTATCGGCTCAGCTAGATC.....................................................	20	0	14	0.21	3	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1
.........................................................................................................................................................................................................ATAGGCAGACAGGCATACAT..............................	20	0	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ATTTATCGGCTCAGCTAGATC.....................................................	21	0	11	0.18	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................TCGTATTTATCGGCTCAGCTAGAT......................................................	24	0	11	0.18	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CGTATTTATCGGCTCAGCTAGATC.....................................................	24	0	11	0.18	2	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0
.............................................................................................................................................................................TCGTATTTATCGGCTCAGCTAGA.......................................................	23	0	12	0.17	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TTTATCGGCTCAGCTAGATCGGT..................................................	23	0	13	0.15	2	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TATTGGCAGATAGGCATACATACTT..........................	25	2	7	0.14	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TCGTATTTATCGGCTCAGCTA.........................................................	21	0	15	0.13	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
............................................................................................................................................................................CTCGTATTTATCGGCTCAGCTAGA.......................................................	24	1	16	0.13	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0