ID:

dvi_21457

 Coordinate:

scaffold_13324:1977864-1978014 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ19743-cds]; exon [dvir_GLEANR_4997:2]; intron [Dvir\GJ19743-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1_DVirRCHelitron+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAATAATAAGAGCTAGAGTCACCAAACTTGACATATAGCTTGTAAAATAGAATATATATAACATTTGATGCTGGAAGAAGAGGGAAAAACAACGATGCCCTTCTTGCACACGAACGTTATCTAACCAACTTGGATATAAATAAAACCTACGAATATATATTATTAGATATATTATAATTAAATTAAAATAAAACATTTCAGGTTTTCCAGTGGAAGATACACCAAGCCACATTATTCCGATAAAAATTGGA
**************************************************(((((((((.((.((((.((.((.((((((.((..............)))))))).)))))))).))(((((((.....)))))))................)))))))))........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060672
9x160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060660
Argentina_ovaries_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 SRR060678
9x140_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060655
9x160_testes_total
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060670
9_testes_total
 SRR060673
9_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060688
160_ovaries_total
 SRR060689
160x9_testes_total
 V053
head
 V116
male body
..........................................................................................................................................................................................................................ACACCAAGCCACATTATTCCGAT.......... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGATACACCAAGCCACATTATTCCGATA......... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GGAAGATACACCAAGCCACATT.................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACCAAGCCACATTATTCCG............ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CCAGTGGAAGATACACCAAGCCAC..................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AGGTTTTCCAGTGGAAGATAC............................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GAAGATACACCAAGCCACAT................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TTCCAGTGGAAGATACACCAAGCCACA.................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GGTTTTCCAGTGGAAGATACACC............................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTGGAAGATACACCAAGCCAC..................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCCAGTGGAAGATACACCAAGCCACA.................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GAAGGTTTTCCAGTGGAAGATAC............................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGAAGGTTTTCCAGTGGAAGATAC............................... 24 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TAATAAGAGCTAGAGTCACCAAA................................................................................................................................................................................................................................. 23 0 20 0.30 6 0 0 0 0 0 0 0 0 0 0 0 0 0 2 3 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................GCGGGAAAATCAACGATG.......................................................................................................................................................... 18 2 12 0.17 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TAATAAGAGCTAGAGTCACCAAACTT.............................................................................................................................................................................................................................. 26 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AAGAGCTAGAGTCACCAAACTTGACA.......................................................................................................................................................................................................................... 26 0 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...TAATAAGAGCTAGAGTCACCAAAC................................................................................................................................................................................................................................ 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................CTGGTAGAAGTGGGAAAA................................................................................................................................................................... 18 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CTAACGGACTTGGATAT.................................................................................................................. 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........AGAGCTAGAGTCACCAAACTTGA............................................................................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.AATAATAAGAGCTAGAGTCACCAAA................................................................................................................................................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................TTTGATGCTGGAGGAAGAG......................................................................................................................................................................... 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......AAGAGCTAGAGTCACCAAACTTG............................................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GAGTCACCAAACTTGACAT......................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..ATAATAAGAGCTAGAGTCACC.................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CGTGACATATAGCTTGTC............................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........GCTAGAGTCACCAAACTTGACATA........................................................................................................................................................................................................................ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...TAATAAGAGCTAGAGTCACCAAACTTG............................................................................................................................................................................................................................. 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......TAAGAGCTAGAGTCACCAAACTTG............................................................................................................................................................................................................................. 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...TAATAAGAGCTAGAGTCACCAAACT............................................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............CTAGAGTCACCAAACTTGACATATAGCT................................................................................................................................................................................................................... 28 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......AAGAGCTAGAGTCACCAAACTTGACAT......................................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.AATAATAAGAGCTAGAGTCACCAAACT............................................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........GCTAGAGTCACCAAACTTGACATAT....................................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....ATAAGAGCTAGAGTCACCAAACT............................................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................GACATAGAGGGTGTAAAATA.......................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........AGAGCTAGAGTCACCAAACTTGACATA........................................................................................................................................................................................................................ 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GATACACCAGGACACGTT.................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTATTATTCTCGATCTCAGTGGTTTGAACTGTATATCGAACATTTTATCTTATATATATTGTAAACTACGACCTTCTTCTCCCTTTTTGTTGCTACGGGAAGAACGTGTGCTTGCAATAGATTGGTTGAACCTATATTTATTTTGGATGCTTATATATAATAATCTATATAATATTAATTTAATTTTATTTTGTAAAGTCCAAAAGGTCACCTTCTATGTGGTTCGGTGTAATAAGGCTATTTTTAACCT
**************************************************(((((((((.((.((((.((.((.((((((.((..............)))))))).)))))))).))(((((((.....)))))))................)))))))))........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 V116
male body		 SRR060678
9x140_testes_total
 M047
female body
 M027
male body		 SRR060675
140x9_ovaries_total
 SRR060687
9_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060658
140_ovaries_total
 SRR060679
140x9_testes_total
 SRR060683
160_testes_total
 SRR060659
Argentina_testes_total
 SRR060657
140_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 M028
head
 SRR060668
160x9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060685
9xArg_0-2h_embryos_total
..........................................................................................................................................................................................................................TGTGGTTAGGTGTAAGAAG.............. 19 2 6 2.50 15 0 11 0 0 0 0 0 1 1 0 0 0 1 1 0 0 0 0 0 0 0
.................................................................................CCGTTTTTGTTGCTACGGGGC..................................................................................................................................................... 21 3 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTTTTGTTGCTACTGGGC..................................................................................................................................................... 21 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTGTAGTTGCTACGGGAA..................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTGAGGTTGCTACGGGAA..................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CTCTTTTTGTTGCTACGGGGC..................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GGGCTTGCAATAGAGTGG............................................................................................................................. 18 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TAGTTGCTACCGGAAGAATG................................................................................................................................................ 20 3 3 1.00 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTTTAGTTGCTACGGGGC..................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GGTCACCTTCTATGTGGTTC......................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTGTTGTTGCTACGGGAG..................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCCCTTCTTGTTGCTACGGGGC..................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTTTTGTTGCTACGGGG...................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCCCTTGTGGTGGCTACGGGAA..................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCGTTTTTGTTGCTACAGGAC..................................................................................................................................................... 21 3 3 0.67 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............GATCTCAGTGGTTTGAACTGTATAT...................................................................................................................................................................................................................... 25 0 20 0.65 13 0 0 0 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGCTACTGGATGAAAGTGTG............................................................................................................................................ 20 3 4 0.50 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTGTTGTTGCTACGGGGC..................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CACTTGTTGTTGCTACGGGGA..................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCATTTTTGTTGCTACGGGGC..................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTGTTGTTGCTACGGGGT..................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTGTAGTGGCTACGGGAA..................................................................................................................................................... 21 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCCCTTTTCGTTGCTACTGGGA..................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TGTGCTTGGAATAGATCG.............................................................................................................................. 18 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTGTTGTAGCTACTGGAA..................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................TCCGTTTTTGTTGCTACGGGGT..................................................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCTTTTTTGTTGCTACGGGG...................................................................................................................................................... 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTGTGGTTGCTACGGGAC..................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTGTAGTTGCTACGGGAT..................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................GTTGCTACCGGAAGAATG................................................................................................................................................ 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTTTAGTTGCTACTGGG...................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................CCACGGGAAGGACGTGTGGT.......................................................................................................................................... 20 3 10 0.30 3 0 0 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0
..................................................................................CCTTGTAGTTGCTACGGGGA..................................................................................................................................................... 20 3 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ACCTTTTAGTTGCTACGGGA...................................................................................................................................................... 20 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TAGTTGCTACCGGAAGAA.................................................................................................................................................. 18 2 8 0.25 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0
..................................................................................CCTTCTAGTTGCTACGGGG...................................................................................................................................................... 19 3 8 0.25 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTGTAGTGGCTACGGGAA..................................................................................................................................................... 20 3 8 0.25 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCTTTTTAGTTGCTACGGGG...................................................................................................................................................... 20 3 14 0.21 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTTTTGTTGCTACCGGGC..................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTGTGGTGGCTACGGGAA..................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCTTTTTTGTTGCTACGGGGC..................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTATAATTGCTACGGGAA..................................................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTGTAGTTGCTACGGGG...................................................................................................................................................... 19 3 16 0.19 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTGTGGTTGCTACGGGGA..................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTGTTGCTGCTACGGGGA..................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CGTTTTTGTTGCTACGGGG...................................................................................................................................................... 19 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTTTAGTTGCTACCGGG...................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTATGGTGGCTACGGGAA..................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCGTTTTTGTTGCTACTGGGA..................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GAATGGTTGAACCGATATCT............................................................................................................... 20 3 12 0.17 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................CCTTTTAGTTGCTACGGGGC..................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCGTTTTGTTGCTACGGGGC..................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCTTTTATGTTGCTACCGGA...................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTGCTGTTGCTACGGGGA..................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTGGTTAGGTGTAAGAAG.............. 18 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TTTTTGTTGCTACGGGGC..................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................CTACTGGATGAAAGTGTGC........................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................GTGGTTTGAACTGTATAT...................................................................................................................................................................................................................... 18 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTTTTGTTGCTACCGGGG..................................................................................................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCGTGTTGTTGTTACGGGAA..................................................................................................................................................... 21 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCCTTGTTGTTGCTACTGGAC..................................................................................................................................................... 21 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CCTTGTTGTCGCTACGGGGA..................................................................................................................................................... 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCGTTTTTTTTGCTACGGGG...................................................................................................................................................... 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................TCTTCTCCCTTCTTCTGGCT............................................................................................................................................................ 20 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TGTAGTTGCTACCGGAAGAA.................................................................................................................................................. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................AGTGGTTTGAACTGTATAT...................................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........CGATCTCAGTGGTTTGAACTGTATATC..................................................................................................................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
....................................................................................TTTTGGTTGCTACGGGG...................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CCGTTTTTGTTGCTACTGGG...................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13324:1977814-1978064 + dvi_21457 AAATAAT-------------------AAGAGCTAGAGTCACCAAACTTGACATATAGCTTGTAA-----------AATAGAATATATA----TAAC------ATTTGATGCTG--GAA----GAAGAGGGAAAAACAACGATGCCCTTCTTGCACACGAACGTTATCTAACCA-------------ACTTGGATATAAATAAAACCTACGAATATATATTATT-------AGATATATTATAATTAAATTAAAAT---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACATTTCAGGTTTTCCA-GTGGAAGATACACCAAGCCACATTATT-CCGATAAAAA--TTGGA
droMoj3 scaffold_6500:29606526-29606715 - AAACTTT-------------------TAGACCTGTAGACTTCAAATTTGCGTTATAT---------------------ATAAA--------------------------------------------------------------------------------------------------------------------GTTAATGGAAACAAAGATATTGTA-------TTTTATATTT------------------------------------------TGGATAACACGCCCCCTTCGCCC--------------------------------------------------------------------------------------------------------------------ACAATTTGTAAAAAACTTATTTCAATTATT------------------------------------------------AATCATATGATTATGTTTTGAAAGTTTC-ATTAAGATTGTATGT----------CT-ACAAAAGAAA--TTATT
droGri2 scaffold_15203:1324092-1324261 + GCACAACTTTTTAAAGAGAAATTTGCAAAT-AAAATTATA-----------------------------------------ATATATT----TAAC------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGTTTAGGCATCAACGTATACAACACCAATGTT------------------------CTTGTCGAAATTCCACAACTTCTGCTTGGATATAAGGATCAACTTGGTTTTATCACTTAAATACAT----------------------------------------------------------------------------------------------------------------------------------------------------T-AGTATTAGAC--CAAAA
droWil2 scf2_1100000004965:370568-370800 - AAACTAA-------------------GTA-----GAGTCACCAAATTTGGTATATATATTG------------GCTTTGAAATATATATAAATTTTATC-------AAAAT--T----GGAAAATC-GAAAAAAATAGCCAAGT----TATGCATATAAACGATTTCCAT-AAGGCCAGAGTTGCCCGTTGGCTGGTGGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATACAAAAATATGCTTGTAAAAATACATAATTGCATTTGTTATTTTAAATTTTAA-----------ATATTTGTTTTACTG-GTGGATGGT-------------------------------GTACC
dp5 Unknown_singleton_3832:2147-2303 + GACTATT-------------------AAG-GCTAGAGTAACCAAATTTGGTATCCACACTCCAGTTAGATCTCACTATAAAATGTATA-------TTTAAAAATTTCGCCCCC--CAC----AAAAGACGAAAATCA----------------------GTGGCATCCAC-AATATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATACAAGTAAACTACAAACGCACATT--------------------------------------------------------------------------------------------------------C--ATAGA
droPer2 scaffold_2033:2236-2433 - AAATAAA-------------------GAAAAATATAATAAATA-ATATCA-----AATAT----------------AATAAATAATATCAAATATAAT----AAT-AAAAA--TGGAA----TAATAAAAAAAAATAATAAAAA-----AAAATAATAAAAAAAAATAA------------------------TAAAAATAGA-----------------------------------------------------------------------------------------------------------------------------------------ATAA---------------------------------------------------------------------------------------------------------TAAAAATATAATAATAAAAATATAATAATAAAAATAAAATAATAAT-----------------ATATAATATATTTACAGTA---------------------------------TA--ATATA
droAna3 scaffold_7767:655-864 + ACAGAAG-------------------ACAT---------------------------------------------------------A----AATA------AATTAATACGG--GAA----GAAGAGGAAAATGAAGCCTTGCACC------------------------------------------------------------------TTT-------TTAGATACT---CTTT--ACACATTTTTCTAG---AATACATTGAAGATTTACAAATGGGGATTCAGTTAA------CAAGAATTGGAATATTTAATCCTAAAATATTAAAACATGAAGAG---------------------------------------------------------------------------------------------------------TTAGATGACATT-----------------------------------------------------------------------------AATGAAGAAAAATTATTATCAATAAAGA--CTTCA
droBip1 scf7180000391383:10108-10221 - GGAAACG-------------------AGA-----------AA--------------------------------------------------------------------------------------------ACGGCGGTGTCCGTATTTTCCACTTCAGTTATCTGGTCA-------------CCCTACATACACACATACCATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATTTTTTTCGGTG----------------CAATTAAT-CCAAAGAGGA--AAAAA
droKik1 scf7180000302698:1069284-1069400 - AAATGGT-------------------CAAAAAAAT-GACATTTTTTTTGC-----ATCGT----------------TAAAAATGTTAAAAAAATTTGCA-------AAAAT--T----GGA-----------------------------------------------------------------------ATTTGAAAAAAATACCTAAATTTATATTATT-------ATTTATATTTAATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT
droFic1 scf7180000451556:8185-8259 - ATCAGTC-------------------CAA-----------G---------------------------------------------------------------------------------------------------------------------------------------------------TTGGATGAGGAAAGCATCATCGATTATATCATAGA-------GGGTATACCAGACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCAAAA--TAAAA
droEle1 scf7180000491028:1291417-1291512 - AACTGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAGAATAAAATTTTAAAATTTATTTAATT-------AGTTAGACTTACTTTAACTTAAAATCCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTTAAAATTTTCCT-GCAATGGATA-----------------------------------
droRho1 scf7180000776671:5236-5365 - AATACCT-------------------AAA-----------ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-------TTTCAAACTACTTATCACTATTAAATTTAAAT---AAAACTATGAACTTTTTATAATGGAAGTACAAACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGACTTCTT-ATT-------TAAATAGGAAAACCATT-CCTACAAATA--TTGGG
droBia1 scf7180000302143:380951-381007 + ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTTTCCCC-GTCGAAGAAACGCCCAGCCACATCATC-CCCATCAAGA--TCGGA
droTak1 scf7180000414416:12178-12332 - AAATTAA-------------------AAAT-GCAGTTTTACTGTGTTTATCA-ATACCTA----------------TCGAAATGTAGGAGAATGTCACT------AAGTGACA--GAA----AAATAAAGGAAATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCCTTAATTACAGACCAACGTGAAGTGAAAAGAACATAAACAAATTGTGAACTCAGGCA--------------------------------------------------------------------------------------------------------T--A-TAT
droEug1 scf7180000409464:226337-226440 + AATATAG-------------------AAA-----------ATT----------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTTAAC-----------TTTCAGTTTACTTATT------------ATAT---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCATTTCAGGTTTTCCC-GTTGAAGAAACACCCAGTCACATCATT-CCAATCAAGA--TCGGA
dm3 chr2R:19853787-19853844 + CATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTTTCCCC-GTCGAAGAAACGCCCAGCCACATCATT-CCCATTAAGA--TCGGA
droSim2 2r:1973033-1973104 - ACGAGTG-------------------TGA-----------TTT-----------------------------------------------------------------------------------------------------------------------------ATTCA-------------ACCCTGGTGTGG------------GACATTTATTATT-------ATTTGAATTATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTAAAA--TTAAA
droSec2 scaffold_61:153505-153612 - TAACCCG-------------------CTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAATACAAGACTGACCGTTATATATCTAA-------AAACGTTTTATAATCAAATAAAACT---A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCATT-----------------ATCCCAACTTCTTCG--------------------------------ACAAATACGCCAAG
droYak3 2R:19831578-19831635 + CATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTTTTCCC-GTTGAAGAAACCCCCAGCCACATCATT-CCCATTAAAA--TCGGA
droEre2 scaffold_4784:22648005-22648112 + ATATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATATAATAATATACATTTTT-------ATTTCTATTTATTTTAATATTAAGT---G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAATTTTGATATCCTT-ATCATAGATACAAATAGGCGC-----------CGAAAA--TTAGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AAATAAT-------------------AAGAGCTAGAGTCACCAAACTTGACATATAGCTTGTAA-----------AATAGAATATATA----TAAC------ATTTGATGCTG--GAA----GAAGAGGGAAAAACAACGATGCCCTTCTTGCACACGAACGTTATCTAACCA-------------ACTTGGATATAAATAAAACCTACGAATATATATTATT-------AGATATATTATAATTAAATTAAAAT---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACATTTCAGGTTTTCCA-GTGGAAGATACACCAAGCCACATTATT-CCGATAAAAA--TTGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCAAGCCACATTATT-CCGAT............2311.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATACACCAAGCCACATTATT-CCGATA...........2811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGATACACCAAGCCACATT.....................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAGCCACATTATT-CCG..............1911.001000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA-GTGGAAGATACACCAAGCCAC........................2411.001000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTCCA-GTGGAAGATAC..................................2111.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATACACCAAGCCACAT......................2011.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCA-GTGGAAGATACACCAAGCCACA.......................2711.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTCCA-GTGGAAGATACACC...............................2311.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAGATACACCAAGCCAC........................2111.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA-GTGGAAGATACACCAAGCCACA.......................2611.001000000000000000000000000001000000000000000000000000000000000000
...TAAT-------------------AAGAGCTAGAGTCACCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.306000000000000000000000001000200030000000000000000000000000000000
...TAAT-------------------AAGAGCTAGAGTCACCAAACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.153000000000000000000000000000030000000000000000000000000000000000
..........................AAGAGCTAGAGTCACCAAACTTGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102001000000000000000000000000100000000000000000000000000000000000
...TAAT-------------------AAGAGCTAGAGTCACCAAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000000000000000000001000000000001000000000000000000000000000000
...........................AGAGCTAGAGTCACCAAACTTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000001000000000000000000000000
.AATAAT-------------------AAGAGCTAGAGTCACCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000001000000000000000000000000000000
..........................AAGAGCTAGAGTCACCAAACTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000010000000000000000000000000000000000
..................................GAGTCACCAAACTTGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
..ATAAT-------------------AAGAGCTAGAGTCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
..............................GCTAGAGTCACCAAACTTGACATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
...TAAT-------------------AAGAGCTAGAGTCACCAAACTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000001000000000000000000000000000000000000000000000000000000
......T-------------------AAGAGCTAGAGTCACCAAACTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
...TAAT-------------------AAGAGCTAGAGTCACCAAACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
...............................CTAGAGTCACCAAACTTGACATATAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000001000000000000000000000000000000000000
..........................AAGAGCTAGAGTCACCAAACTTGACAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000000010000000000000000000000000
.AATAAT-------------------AAGAGCTAGAGTCACCAAACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000100000000000000000000000000000000000000000000000000000000
..............................GCTAGAGTCACCAAACTTGACATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
.....AT-------------------AAGAGCTAGAGTCACCAAACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000100000000000000000000000
...........................AGAGCTAGAGTCACCAAACTTGACATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
droMoj3
AAACTTT-------------------TAGACCTGTAGACTTCAAATTTGCGTTATAT---------------------ATAAA--------------------------------------------------------------------------------------------------------------------GTTAATGGAAACAAAGATATTGTA-------TTTTATATTT------------------------------------------TGGATAACACGCCCCCTTCGCCC--------------------------------------------------------------------------------------------------------------------ACAATTTGTAAAAAACTTATTTCAATTATT------------------------------------------------AATCATATGATTATGTTTTGAAAGTTTC-ATTAAGATTGTATGT----------CT-ACAAAAGAAA--TTATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................T------------------------------------------TGGATAACACGCCCCCTTCGCCC--------------------------------------------------------------------------------------------------------------------........................................................................................................................................................2420.501000010
........................................................T---------------------ATAAA--------------------------------------------------------------------------------------------------------------------GTTAATGGAAACAAAGAT....................................................................................................................................................................................................................................................................................................................................................................2440.502100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAAGTTTC-ATTAAGATT....................................21200.051100000
droGri2
GCACAACTTTTTAAAGAGAAATTTGCAAAT-AAAATTATA-----------------------------------------ATATATT----TAAC------AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGGTTTAGGCATCAACGTATACAACACCAATGTT------------------------CTTGTCGAAATTCCACAACTTCTGCTTGGATATAAGGATCAACTTGGTTTTATCACTTAAATACAT----------------------------------------------------------------------------------------------------------------------------------------------------T-AGTATTAGAC--CAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAACTAA-------------------GTA-----GAGTCACCAAATTTGGTATATATATTG------------GCTTTGAAATATATATAAATTTTATC-------AAAAT--T----GGAAAATC-GAAAAAAATAGCCAAGT----TATGCATATAAACGATTTCCAT-AAGGCCAGAGTTGCCCGTTGGCTGGTGGGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATACAAAAATATGCTTGTAAAAATACATAATTGCATTTGTTATTTTAAATTTTAA-----------ATATTTGTTTTACTG-GTGGATGGT-------------------------------GTACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
GACTATT-------------------AAG-GCTAGAGTAACCAAATTTGGTATCCACACTCCAGTTAGATCTCACTATAAAATGTATA-------TTTAAAAATTTCGCCCCC--CAC----AAAAGACGAAAATCA----------------------GTGGCATCCAC-AATATTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATACAAGTAAACTACAAACGCACATT--------------------------------------------------------------------------------------------------------C--ATAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................ATCCACACTCCAGTTAGATCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310001000000
......................................AACCAAATTTGGTATCCACACTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530300000000
.....TT-------------------AAG-GCTAGAGTAACCAAATTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530020000010
.....................................TAACCAAATTTGGTATCCACACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530000000030
..........................................AAATTTGGTATCCACACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020020000000
......T-------------------AAG-GCTAGAGTAACCAAATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000002000
........................................CCAAATTTGGTATCCACACTCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23150.0710100000000
..........................................AAATTTGGTATCCACACTCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.0710000000010
...........................AG-GCTAGAGTAACCAAATTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
......T-------------------AAG-GCTAGAGTAACCAAATTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000100000
...TATT-------------------AAG-GCTAGAGTAACCAAATTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000001000
......T-------------------AAG-GCTAGAGTAACCAAATTTGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
..............................GCTAGAGTAACCAAATTTGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010000000
.....................................TAACCAAATTTGGTATCCACACTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
droPer2
AAATAAA-------------------GAAAAATATAATAAATA-ATATCA-----AATAT----------------AATAAATAATATCAAATATAAT----AAT-AAAAA--TGGAA----TAATAAAAAAAAATAATAAAAA-----AAAATAATAAAAAAAAATAA------------------------TAAAAATAGA-----------------------------------------------------------------------------------------------------------------------------------------ATAA---------------------------------------------------------------------------------------------------------TAAAAATATAATAATAAAAATATAATAATAAAAATAAAATAATAAT-----------------ATATAATATATTTACAGTA---------------------------------TA--ATATASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ACAGAAG-------------------ACAT---------------------------------------------------------A----AATA------AATTAATACGG--GAA----GAAGAGGAAAATGAAGCCTTGCACC------------------------------------------------------------------TTT-------TTAGATACT---CTTT--ACACATTTTTCTAG---AATACATTGAAGATTTACAAATGGGGATTCAGTTAA------CAAGAATTGGAATATTTAATCCTAAAATATTAAAACATGAAGAG---------------------------------------------------------------------------------------------------------TTAGATGACATT-----------------------------------------------------------------------------AATGAAGAAAAATTATTATCAATAAAGA--CTTCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................TACGG--GAA----GAAGAGGAAAATGAAGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................26140.142110000
..................................................................................................................................................................................................................................................................................................................................TAAAATATTAAAACATGAAGAG---------------------------------------------------------------------------------------------------------TTAGA.......................................................................................................................27200.102000020
....................................................................................................................................................................................................................................TACT---CTTT--ACACATTTTTCTAG---AA.........................................................................................................................................................................................................................................................................................................................24200.102200000
..........................................................................................................................................................................................................................................................TCTAG---AATACATTGAAGATTTACAAA......................................................................................................................................................................................................................................................................................................26200.102200000
...................................................................................................................................AATGAAGCCTTGCACC------------------------------------------------------------------TTT-------TTAGATA.......................................................................................................................................................................................................................................................................................................................................................26130.081010000
................................................................................................................................GAAAATGAAGCCTTGCACC------------------------------------------------------------------TTT-------TTAGA.........................................................................................................................................................................................................................................................................................................................................................27130.081010000
...............................................................................................................................GGAAAATGAAGCCTTGCACC------------------------------------------------------------------TTT-------TT............................................................................................................................................................................................................................................................................................................................................................25130.081010000
..........................................................................................................................GAAGAGGAAAATGAAGCCTTGCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................24130.081010000
..........................................................................................................................GAAGAGGAAAATGAAGCCTTGCACC------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................25130.081010000
.............................................................................................................ACGG--GAA----GAAGAGGAAAATGAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................24140.071000010
...............................................................................................................................................................................................................................................................................TTTACAAATGGGGATTCAGT..........................................................................................................................................................................................................................................................................................20200.051000010
...............................................................................................................................................................................................................................TTAGATACT---CTTT--ACACATTT....................................................................................................................................................................................................................................................................................................................................21200.051100000
..........................................................................................................................................................................................................................................................................................................................................TAAAACATGAAGAG---------------------------------------------------------------------------------------------------------TTAGATGACAT.................................................................................................................25200.051100000
...........................................................................................................................................................................................................................................................CTAG---AATACATTGAAGATTTACAAA......................................................................................................................................................................................................................................................................................................25200.051010000
.........................................................................................................TAATACGG--GAA----GAAGAGGAAAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
...........................................................................................................................................................................................................................................................CTAG---AATACATTGAAGATTTACAA.......................................................................................................................................................................................................................................................................................................24200.051010000
...............................................................................................................................................................................................................................................................................TTTACAAATGGGGATTCAGTTAA------CA...............................................................................................................................................................................................................................................................................25200.051000001
........................................................................................................................................................................................................................................................................TTGAAGATTTACAAATGGGGATTC.............................................................................................................................................................................................................................................................................................24200.051010000
........................................................................................................................................................................................................................................................................TTGAAGATTTACAAATGGGGATTCAG...........................................................................................................................................................................................................................................................................................26200.051100000
..................................................................................................................................................................................................................................................................................................................................TAAAATATTAAAACATGAAGAG---------------------------------------------------------------------------------------------------------............................................................................................................................22200.051100000
..................................................................................................................................................................................................................................................................................................................................................GAAGAG---------------------------------------------------------------------------------------------------------TTAGATGACATT-----------------------------------------------------------------------------AATGAAGAA..........................27200.051100000
........................................................................................................................................................................................................................................................................................................................................ATTAAAACATGAAGAG---------------------------------------------------------------------------------------------------------TTAGATG.....................................................................................................................23200.051010000
...........................................................................................................................................................................................................................................................CTAG---AATACATTGAAGATTTACAAAA.....................................................................................................................................................................................................................................................................................................26200.051010000
.............................T---------------------------------------------------------A----AATA------AATTAATACGG--GAA----GAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
......................................................................................................................................................................................................................................................................................................................................................AG---------------------------------------------------------------------------------------------------------TTAGATGACATT-----------------------------------------------------------------------------AATGAAGAAAAAT......................27200.051100000
............................................................................................................TACGG--GAA----GAAGAGGAAAATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
droBip1
GGAAACG-------------------AGA-----------AA--------------------------------------------------------------------------------------------ACGGCGGTGTCCGTATTTTCCACTTCAGTTATCTGGTCA-------------CCCTACATACACACATACCATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATTTTTTTCGGTG----------------CAATTAAT-CCAAAGAGGA--AAAAASizeHit CountTotal NormTotal
No Reads
droKik1
AAATGGT-------------------CAAAAAAAT-GACATTTTTTTTGC-----ATCGT----------------TAAAAATGTTAAAAAAATTTGCA-------AAAAT--T----GGA-----------------------------------------------------------------------ATTTGAAAAAAATACCTAAATTTATATTATT-------ATTTATATTTAATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTSizeHit CountTotal NormTotal
No Reads
droFic1
ATCAGTC-------------------CAA-----------G---------------------------------------------------------------------------------------------------------------------------------------------------TTGGATGAGGAAAGCATCATCGATTATATCATAGA-------GGGTATACCAGACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCAAAA--TAAAASizeHit CountTotal NormTotal
No Reads
droEle1
AACTGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAGAATAAAATTTTAAAATTTATTTAATT-------AGTTAGACTTACTTTAACTTAAAATCCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTATTTAAAATTTTCCT-GCAATGGATA-----------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AATACCT-------------------AAA-----------ACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATT-------TTTCAAACTACTTATCACTATTAAATTTAAAT---AAAACTATGAACTTTTTATAATGGAAGTACAAACAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGGACTTCTT-ATT-------TAAATAGGAAAACCATT-CCTACAAATA--TTGGGSizeHit CountTotal NormTotal
No Reads
droBia1
ATTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTTTCCCC-GTCGAAGAAACGCCCAGCCACATCATC-CCCATCAAGA--TCGGASizeHit CountTotal NormTotal
No Reads
droTak1
AAATTAA-------------------AAAT-GCAGTTTTACTGTGTTTATCA-ATACCTA----------------TCGAAATGTAGGAGAATGTCACT------AAGTGACA--GAA----AAATAAAGGAAATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGCCTTAATTACAGACCAACGTGAAGTGAAAAGAACATAAACAAATTGTGAACTCAGGCA--------------------------------------------------------------------------------------------------------T--A-TATSizeHit CountTotal NormTotal
No Reads
droEug1
AATATAG-------------------AAA-----------ATT----------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTTAAC-----------TTTCAGTTTACTTATT------------ATAT---A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCATTTCAGGTTTTCCC-GTTGAAGAAACACCCAGTCACATCATT-CCAATCAAGA--TCGGASizeHit CountTotal NormTotal
No Reads
dm3
CATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTTTCCCC-GTCGAAGAAACGCCCAGCCACATCATT-CCCATTAAGA--TCGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCC-GTCGAAGAAACGCC...............................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCC-GTCGAAGAAACGCCCA.............................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-GTCGAAGAAACGCCCAGCC..........................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAACGCCCAGCCACATCA....................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCACATCATT-CCCATTAAGA--TCGGA2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-GTCGAAGAAACGCCCAGCCACATC.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCC-GTCGAAGAAACGCCCAGCC..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCC-GTCGAAGAAACGCCCAGCCACA.......................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCCAGCCACATCAT...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCC-GTCGAAGAAACGCCCAGC...........................2511.0010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGAAACGCCCAGCCACA.......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACATCATT-CCCATTAAGA--TCGGA2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACATCATT-CCCATTAA.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC-GTCGAAGAAACGCCCAGC...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTCCCC-GTCGAAGA.....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATT-CCCATTAAGA--TCGGA2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCCC-GTCGAAGAAACGCCCAGCCAC........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTCCCC-GTCGAAGAAACGCCCA.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATT-CCCATTAAGA--TCGGA2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-GTCGAAGAAACGCCCAGC...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAACGCCCAGCCACATC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-GTCGAAGAAACGCCCAGCCACATCA....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGAAACGCCCAGCCACAT......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC-GTCGAAGAAACGCCCA.............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCCCAGCCACATCA....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAACGCCCAGCCAC........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTCCCC-GTCGAAGAAACGCC...............................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATT-CCCATTAAGA--TCGG.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droSim2
ACGAGTG-------------------TGA-----------TTT-----------------------------------------------------------------------------------------------------------------------------ATTCA-------------ACCCTGGTGTGG------------GACATTTATTATT-------ATTTGAATTATTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTAAAA--TTAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................TGTGG------------GACATTTATTATT-------ATTTGAAT...............................................................................................................................................................................................................................................................................................................................................2613.00300000000210000000
droSec2
TAACCCG-------------------CTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAATACAAGACTGACCGTTATATATCTAA-------AAACGTTTTATAATCAAATAAAACT---A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGGCATT-----------------ATCCCAACTTCTTCG--------------------------------ACAAATACGCCAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTTTTCCC-GTTGAAGAAACCCCCAGCCACATCATT-CCCATTAAAA--TCGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTTTTCCC-GTTGAAGA.....................................1811.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATT-CCCATTAAAA--TCGGA1911.00101000000000
droEre2
ATATAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATATAATAATATACATTTTT-------ATTTCTATTTATTTTAATATTAAGT---G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAATTTTGATATCCTT-ATCATAGATACAAATAGGCGC-----------CGAAAA--TTAGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 09:08 PM