dvi_21426

Name	Class	Family	Strand
Ulysses_I-int	LTR	Gypsy	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GCGTTTACGGTAACAAAGCTGCTCATCAATTGTGTAGGCTCATGGATAAGGTGAGCTCGGCTACCTTAACGTGTACTTGTATGATTTGTTGATAATTTTAATAGATTTTCAGAAGCACATAAATGCCTGAGATTGGTGACCGTATGCTTGAAGAGAGCAATTCTCACAATAGGCATTGCAAAATCGAAGTTCTAGATTCGCAACATAAATTACTTCCCCTTTATTATATGCGGCGGGGCAGCTAAGGCGAT ************************************************..((((((((..........((((..(((...((((((((((.....))))))))))..)))..))))...((((((((......((((..((.(((((.....)))))))..))))..))))))))......))).))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M027 male body	SRR060660 Argentina_ovaries_total	SRR060662 9x160_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total
...............................................................................................................................TGAGATTGGTGACTGTTT..........................................................................................................	18	2	6	0.17	1	1	0	0	0
.............................................................................................................................CCTGAAGTCGGTGACCGT............................................................................................................	18	3	20	0.10	2	0	2	0	0
.......................................TGATGGATTAGGTGAGCT..................................................................................................................................................................................................	18	2	10	0.10	1	0	0	1	0
.......................................................................................GTTGCTAATTCTACTAGAT.................................................................................................................................................	19	3	20	0.05	1	0	0	0	1

CGCAAATGCCATTGTTTCGACGAGTAGTTAACACATCCGAGTACCTATTCCACTCGAGCCGATGGAATTGCACATGAACATACTAAACAACTATTAAAATTATCTAAAAGTCTTCGTGTATTTACGGACTCTAACCACTGGCATACGAACTTCTCTCGTTAAGAGTGTTATCCGTAACGTTTTAGCTTCAAGATCTAAGCGTTGTATTTAATGAAGGGGAAATAATATACGCCGCCCCGTCGATTCCGCTA ************************************************..((((((((..........((((..(((...((((((((((.....))))))))))..)))..))))...((((((((......((((..((.(((((.....)))))))..))))..))))))))......))).))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	M047 female body
..........................................................CCGATGGAATTGCAAATGGGC............................................................................................................................................................................	21	3	1	1.00	1	1	0
..............................ACAGTTCCGAGTACCTATTCCAAT.....................................................................................................................................................................................................	24	3	1	1.00	1	0	1
..........................................................CCGATGGAATTGCCACTGAAC............................................................................................................................................................................	21	3	2	0.50	1	1	0
..........................................................CCGATGGAATAGCACGTGACC............................................................................................................................................................................	21	3	4	0.25	1	1	0
...........................................................CGATTGAATAGCACCTGAAC............................................................................................................................................................................	20	3	7	0.14	1	1	0
...............................................................................................................................................TAGGATCTTCTCTCGTTACG........................................................................................	20	3	9	0.11	1	0	1
..........................................................................................................................................................................................................TGTATTTATTGAAGGGGT...............................	18	2	9	0.11	1	1	0
............................................................GATGTAATTGCACATAAGC............................................................................................................................................................................	19	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_13324:1922471-1922721 +	dvi_21426	GCGTTTACGGTAA----------------------------------------------CAAAGCTGCTCATCAATTGTGTAGGCTCATGGATAAGGTGAGCTCGGCTA-------------CCTTAACGTGTACTTGTATGATTTGTTGATAATTTTAATAGATTTTCAGAAGCACATAA-ATGCCTGAGATTGGTGACCGTATGCTTGAAGAGAGCAATTCTCACAATAGGCATTGCAAAATCGAAGTTCTAGATTCGCAACATAAATTACTTCCCCTTTATTATATGCGGCGGGGCAGCT---------------------AAGGCGAT
droMoj3	scaffold_6498:3076035-3076286 +		A------------------------------------------------------------ATGCTCCACAGACAATGTCGAAGTTAATGGATAAAGTAATTCCCACTAATCTGCGTCGTGAAGTTTTTATCTATTTAGATGACTTGTTGGTAGTATCGGATACTTTCGAACGGCATCTAAATGTCCTAAAAGAGTTAGCGAATCAGATAAAAACAGCAGGTTTGACCATCAATATTGAGAGAAGTAATTTCTGTCTCAAAGAGGTAAAATATTTAGGTCATGTGAATCGCAATGGTACAGTTA--------------------GCACAGAT
droGri2	scaffold_15116:761484-761795 +		GCTTTTACGGTGCCTGGCCGCCCGCTCTACCAGTTCGTCGTAATGCCCTTCGGACTGTGTAACGCCGCTCAAAGACTTTGCCGTCTAATGGATAAGGTTATACTGTCACAGCTCAGGTCGAATGTGTTCGTGTACTTGGATGATTTGCTGATTATAGCTCCGGACTTTAACACACATATAAAATATTTGGGACTCGTGGCGCAGAAACTAAAAGAGGCCAATTTGACAATTGGATTAAAAAAATCTAAGTTCTGTTTCAAGAGTCTGAAATATCTAGGTTTCATAGTAGGGGGAGGGACTATGC--------------------GAACCGAT
droWil2	scf2_1100000004954:1809428-1809729 -		GCGTTTACCATGCCGGGGCGCCCGCTGTATCAGTTCCGCAGAATGCCTTTCGGTCTCTCCAATGCGGCGCAGCGCTTATGCCGACTCATGGATAAGGTCATTCCCAA-GGCTTGAGAAGCCACGTAATCGTGTATCTGGATGATCTCCTGATTATATCCCGCACGTTTGAAAAGCACATGAAGCACCTGGAGGCCGTAGCTGAATGTTTGAAGAAGGCCAATCTTACTATCGGGTTA-AAAAATCAAAATTTTGCTTTAGATTCTGTAAATACCTGGGATTTGTGATCGGAGATGGAAAATTAA----------------------------
dp5	Unknown_singleton_3565:3962-4229 -		GCCTT--------------------------------------------TTAGTTTATGCAACGTCTTACAAACCATGTCCAGACTCATGGATAAGGTAATACCCGCAGCTCTCCGAAATCAAGTTTTTGTCTACTTGGATGACCTTCTGGTTATTTCAGACACATTTCCCTCGCATCTTGAGGTACTGCGTTCGGTGGCAGAACACATCCGTCACGCAGGGCTGACCATAAATATAGAGAAGAGCAGATTCTGTAGGAGATCCGTAAAATATTTAGTTCACGTAATTGGCGAAGGCGGCATTA--------------------AAACAGAC
droPer2	scaffold_3:1022540-1022807 -		GCCC--------------------------------------------TTCGGGTTGTGCAATCCAGCCCAATGGCTGTTTCGGTTGATGGATCGAGTAATTGCACAACGACTCCGAAGCCATGTCTTTGTATACTTGGACGATCTACTAGTTATTTCACGGACGTTTGAGGAGCATATACAGCTGTTAGAGGAAGTGGCCAAGTGTCTCAAGGAGGCAAACCTAACAATTTAAAGAAAAAAATCGAAATTCGGCTATAAATATTTAAAGTATTTAGGGTACATCGTAGGCGACGGCGCACTTA--------------------GGACAGAT
droAna3	scaffold_13280:51699-51959 -		TT-----------------------------------------------TCGGTCTCC----AAGCGCTCAAACTCTGTGCAGATTGATGGATATTGTGATACCACCAACGTTGCGCACAAGAGTCTTCGTATATTTGGACGATTTGCTAGTTTTGTCCGAAGATTTCGAGTCACACATGACATTGCTCGAAGAAATCGCAAGCCACCTGCGTAAGGCAAACCTAACAATAAATATAGCTAAATCGAAGTTTTGCTTTACAGAGGTTAGATATCTGGGATATATCATTGGGCACGGCCAATTGA--------------------AAGTTGAC
droBip1	scf7180000396540:20391-20702 +		GCTTTCACGGTAGCGGGACGTCTGTTGTACCATTTCGTGGTTATGCCATTTTGGTTAACGAATGCAGCCCAGAGGTTGTGTTGGCTCACGGACAAAGTGATACGACAGGAACTCAGGGAAAGCGTCTTTGTGTACCTGGACGACTTGTTGGTGGTATCGGAAAACTTTCAGGACCACACGATGACGCTGGAGGAGGTTTCCAGAAGCTTGAAGGCGGCAGGACTGATAATAGGCCTGAAGAAATCGCACTTTTGTTTTAAGGAGCTGCGTTATCTGGGCTATGTGATTGACGGAGGAGTGGTGA--------------------GGACCGAT
droKik1	scf7180000302437:97372-97683 +		GCATTTACGGTAGCGGGAAGGCCACTGTACCAGTTCGCGATGATGCCGTTCGGGCTGTGCAACGCGGCGCAGCGGCTTTGCCGGCTCATGGATCAGGTGATTCCCGCGCAGCTGAGGTCAAACGTGTTCGTCTACCTAGACGATCTGCTGATCATCACGCCGGACTTCGACACGCACATGAAGTACCTCAGTTTGGTGGCGGAATGTCTGAGGAAGGCAAATTTGACGATAGGGTTGAAAAAGTCAAAGTTTTGCTTCAAGACGCTGAAGTACCTGGGGTTCATCATCGGCGGAGGGACACTCC--------------------GAATGGAT
droFic1	scf7180000454116:28927-29221 +		TCGTCCAC-----------------TGTATCAGTTTCGGCGAATGCCGTTTGGTCTATGCAATTCGGCACAGCGATTATGCAGCGTGATGGATAAGGTGATACCACAGCGATTGCGCAGTCAAGTATTTGTGTACCTGGATGATTTGTTGATGATATCTAAGACCTTCGAAGAGCACTGCAGATTGCTGAAAGAAGTGGCAGAGTGTTTAAGGAAAGCGAATTTGACGATCGGTATGCAAAAATCCAAATTTTGTTTTAAATACTTACGATATTTGGGATATATCATCGGCGATAGAGCCTTTC--------------------GAACTGAT
droEle1	scf7180000491119:3309-3559 +		------------------------------------------------------------AACGCCGCGCAAACACTCTGCAGGTTAATGGACTTAGTAATACCAGCTAGTCTGCGCACTCGGGTGTTTGTATACTTAGATGATTTGTTAATTTTGTCTGATGA-TTTGAGTCACACATGAAATTGCTAGAAGAGGTCGCTAGATATTTGCGAAAGGCTAATTTAACGATTAACATAGCAAAATCAAATTTTTGTATGACCGAGATCAAGTACTTAGGGTTCATCATAGGGCACGGACAGCTTA--------------------AAGTCGAT
droRho1	scf7180000760278:843-1097 -		GCATTTACGGTTCCT---------------------------------------------------------TGGTTGGTGAGACTTATGGACCGAGTGATCCCAGCTGAGATCCGCTCCAACGTTTTTGTCTACCTCGATGATCTGCTGATACTGGCTCCAGATATCCAGACCCACTTCAGGTACCTTCGGAGAGTCGCGGAATGCCTGAAAGCAGCGGGGTTAACGATAGGTATGAGTAAGTCAAAGTTTTGCTTCAAATCATTGACCTACCTGGGCTTTATCGTTGGTGGAGGTCGTCTAC--------------------GAATGGAT
droBia1	scf7180000299159:4501-4812 +		GCATTCACGATTCCAGGCAGACCGTTGTACCAGTTTCGAATGATGCCTTTCAGGCTGTCCAACGCTGCACAACGCTTGGTGCGGCTTATGGATCGGGTGATACCAGCGGAACTCAGATCAAACGTCCTCGTATACTTGGGCGACCTGTTAATCCACGCTCCAGATTTTCAGACGCACTTGAAATACTTGCGTCGAGTAGCCCACAGTGTGAAATCAGCCGGATTGACTATAGGTTTAAAGAAGCCGAAGTTTTACTTCAAATCGTTGACTTACCTATGGTTTAAAGTCGGAGGTGGACTGCTGC--------------------GGATGGAT
droTak1	scf7180000414889:7951-8226 +		CCTT---------------------------------------------TTGGGCTAACGAATGCCGCTCAGACTTTATGTAGGCTTATGGATCAAGTGATACCCGCCCATCTGCGAACGCGTGTTTTCGTCTATTTAGACGATCTTTTAGTGTTGTCCGATGATTTTGAATCTCATCTTATGTTGTTACGAGAAGTAGCGGTGCATTTACGGAAAGCTAATCTTACGATTAACGTAGCGAAGTCCAATTTCGTTCATTGTTGGA-----------TAATTCATAATTGGATATGGCCAACTTAAAACCGATCCTGGCAAAATTAAAGCAAT
droEug1	scf7180000409323:14287-14593 +		GCATTTACGATACCGAACAGGCCGTTATACCAATATAAAGTTATGCCTTTTGGTCTCTGTAATGCTGCCCAAACTTTGTGTAGATTGATGGATTTGGTTATCCCAGCGAAATAGCGTACGAGAGTATTTGTTTACTTAA----GCTCTTAGAGCTTTCTGAGGATTTCGAATCCCATATGAAACTATTAGAAGAAATAGCAAGTTATCTCCGTGATGCGAATTTTACGATAAACATAGCCAAATCA-AGTTCTGCGAGACCGAAATCAAATATTTAGGTTTTGTTATTGGTCATGGTGAGTTGA--------------------AAGTCGAT
dm3	chr4:20713-20727 +		GCGTTTACGGTGCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	node_43481:1704-2034 -		GCGTTCACAATTCCTGGGAGACCGTTGTATCAGTTCCGGATGATGCCATTCGGACTGTGCAACGCAGCGCAACGCTTGGTAAGTCTAATGGACCGGGTGATACCAGCGGACCTGAGATCGAACGTTTTTGTGTATCTGGTTGACCTTCCAATCTTGGCTTCCAATTACCAGACCCACTTAAAGTACCTGCTTGGAGTGGCCCAGGGCCTGAAATCAGCTTGTTTAACAATCGGCCTACAAAAATCATAATTTTGCCTTAAAGCATTGACTTACCTCGTGTATATAGTTGGAGGGGGGCTG-TGCGCATGAACCCAGGGCTAGTTTCGGCGAT
droSec2	scaffold_3033:1492-1502 -		GCGTTTACGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	v2_chrUn_508:2086-2346 -		GCAT---------------------------------------------TCGGTCTCACCAACGCTTCTCAAACTATGACTAGATTGATGGACAAGGTTATTCCCGCAAATCTGAGAAATGAGGTTTTCGTGTATCTGGATTACCTGCTCATAGTACCAGATAGCTTTGAGGCTCACATGAGGGTGTTAGGCTTAGTGGCGAGCTATGTAAAAACAGCAGGGTTAACTCTCAATGTCGAGAAAAGCAAGTTCTGCATGCGTACTGTCAAGTATCTGGGCCATATTGTCGGGGAGGGCGTT--------------------------ACAGAT
droEre2	scaffold_4845:493472-493782 +		GCGTATACGGTTGCCGGGAGGGCTTTGTACCAATTCGCAATGATGCCGTTCGGCCTGTGCAATGCGGCGCAGAGGCTCTATCGCCTGATGGACGAGGTGATTCCCGCGCAGTTGAGATCGAACGTCTTTGCCTACCTCAACGATCTGCTCATCATCGCGCCGGACTTCGAAACCCATCTGAAGTACCTCCGGTTGGTAACGGCATGCCTGAAAAAAGCAAATCTGACGATAGGTGTTAAGAAGTCAACATTTTTCTATAAGGCGTTAAAATACCTCGGATTCATAATCGGTGGAGGTACACTTC--------------------GGATGGA-

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

GCGTTTACGGTAA----------------------------------------------CAAAGCTGCTCATCAATTGTGTAGGCTCATGGATAAGGTGAGCTCGGCTA-------------CCTTAACGTGTACTTGTATGATTTGTTGATAATTTTAATAGATTTTCAGAAGCACATAA-ATGCCTGAGATTGGTGACCGTATGCTTGAAGAGAGCAATTCTCACAATAGGCATTGCAAAATCGAAGTTCTAGATTCGCAACATAAATTACTTCCCCTTTATTATATGCGGCGGGGCAGCT---------------------AAGGCGAT

Size

Hit Count

Total Norm

Total

M027
Male-body

M028
Head

M047
Female-body

M061
Embryo

SRR060654
Ovary

SRR060655
Testis

SRR060656
Ovary

SRR060657
Testis

SRR060658
Ovary

SRR060659
Testis

SRR060660
Ovary

SRR060661
Embryo

SRR060662
Embryo

SRR060663
Embryo

SRR060664
Male-body

SRR060665
Female-body

SRR060666
Male-body

SRR060667
Female-body

SRR060668
Male-body

SRR060669
Female-body

SRR060670
Testis

SRR060671
Male-body

SRR060672
Female-body

SRR060673
Ovary

SRR060674
Ovary

SRR060675
Ovary

SRR060676
Ovary

SRR060677
Ovary

SRR060678
Testis

SRR060679
Testis

SRR060680
Testis

SRR060681
Testis

SRR060682
Embryo

SRR060683
Testis

SRR060684
Embryo

SRR060685
Embryo

SRR060686
Embryo

SRR060687
Embryo

SRR060688
Ovary

SRR060689
Testis

SRR1106712
embryo_0-2h

SRR1106713
embryo_0-2h

SRR1106714
embryo_2-4h

SRR1106715
embryo_4-6h

SRR1106716
embryo_4-6h

SRR1106717
embryo_6-8h

SRR1106718
embryo_6-8h

SRR1106719
embryo_8-10h

SRR1106720
embryo_8-10h

SRR1106721
embryo_10-12h

SRR1106722
embryo_10-12h

SRR1106723
embryo_12-14h

SRR1106724
embryo_12-14h

SRR1106725
embryo_14-16h

SRR1106726
embryo_14-16h

SRR1106727
larvae

SRR1106728
larvae

SRR1106729
mixed whole adult body

SRR1106730
embryo_16-30h

V047
Embryo

V053
Head

V116
Male-body

GSM1528803
follicle cells

No Reads

droMoj3

A------------------------------------------------------------ATGCTCCACAGACAATGTCGAAGTTAATGGATAAAGTAATTCCCACTAATCTGCGTCGTGAAGTTTTTATCTATTTAGATGACTTGTTGGTAGTATCGGATACTTTCGAACGGCATCTAAATGTCCTAAAAGAGTTAGCGAATCAGATAAAAACAGCAGGTTTGACCATCAATATTGAGAGAAGTAATTTCTGTCTCAAAGAGGTAAAATATTTAGGTCATGTGAATCGCAATGGTACAGTTA--------------------GCACAGAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................ACCATCAATATTGAGAGAAGTAATTT.................................................................................	26	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................ACCATCAATATTGAGAGAAGTAATTTC................................................................................	27	1	2.00	2	2	0	0	0	0	0
.........................................................................CAATGTCGAAGTTAATGGATAAAGTAA........................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................TGACTTGTTGGTAGTATCGGATACTTT.....................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................ATGTGAATCGCAATGGTACAGTTA--------------------GC......	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................TGACTTGTTGGTAGTATCGGATACT.......................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................ACCATCAATATTGAGAGAAGTAAT...................................................................................	24	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................GACTTGTTGGTAGTATCGGATACTC......................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................GCGTCGTGAAGTTTTTATCTATTTAGA................................................................................................................................................................................................	27	4	1.00	4	3	0	0	0	1	0
.................................................................................................................................................................................................................................ACCATCAATATTGAGAGAAGTAATTC.................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................................................................ACAATGTCGAAGTTAATGGATAAAGTC.........................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................TGACTTGTTGGTAGTATCGGATAC........................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................ACCATCAATATTGAGAGAAGTAA....................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................GCGAATCAGATAAAAACAGCAGG...............................................................................................................	23	2	0.50	1	1	0	0	0	0	0
....................................................................................................................................................................................................TAGCGAATCAGATAAAAACAGCA.................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
...................................................................................................................................................................................AAATGTCCTAAAAGAGTTAGCGAATC...............................................................................................................................	26	2	0.50	1	0	0	0	0	0	1
.........................................................................................................................................................GTATCGGATACTTTCGAACGGC.............................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0
.................................................................................................................GCGTCGTGAAGTTTTTATCTATTTA..................................................................................................................................................................................................	25	4	0.50	2	2	0	0	0	0	0
................................................................................................................................................................ATACTTTCGAACGGCATCTAAATGTCCTA...............................................................................................................................................	29	4	0.25	1	1	0	0	0	0	0
................................................................................................................................................................ATACTTTCGAACGGCATCTAAATGTCCA................................................................................................................................................	28	4	0.25	1	0	0	0	0	1	0
................................................................................................................................TATCTATTTAGATGACTTGTTCCC....................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
.................................................................................................................................................................TACTTTCGAACGGCATCTAAATGTCC.................................................................................................................................................	26	4	0.25	1	1	0	0	0	0	0
.................................................................................................................GCGTCGTGAAGTTTTTATCTAT.....................................................................................................................................................................................................	22	4	0.25	1	1	0	0	0	0	0
......................................................................................................................................................................TCGAACGGCATCTAAATGTCCTAAAA............................................................................................................................................	26	4	0.25	1	0	0	0	0	1	0
................................................................................................................TGCGTCGTGAAGTTTTTATCTATTTAG.................................................................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0
................................................................................................................................................................ATACTTTCGAACGGCATCTAAATGTCC.................................................................................................................................................	27	4	0.25	1	1	0	0	0	0	0

droGri2

GCTTTTACGGTGCCTGGCCGCCCGCTCTACCAGTTCGTCGTAATGCCCTTCGGACTGTGTAACGCCGCTCAAAGACTTTGCCGTCTAATGGATAAGGTTATACTGTCACAGCTCAGGTCGAATGTGTTCGTGTACTTGGATGATTTGCTGATTATAGCTCCGGACTTTAACACACATATAAAATATTTGGGACTCGTGGCGCAGAAACTAAAAGAGGCCAATTTGACAATTGGATTAAAAAAATCTAAGTTCTGTTTCAAGAGTCTGAAATATCTAGGTTTCATAGTAGGGGGAGGGACTATGC--------------------GAACCGAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

GCGTTTACCATGCCGGGGCGCCCGCTGTATCAGTTCCGCAGAATGCCTTTCGGTCTCTCCAATGCGGCGCAGCGCTTATGCCGACTCATGGATAAGGTCATTCCCAA-GGCTTGAGAAGCCACGTAATCGTGTATCTGGATGATCTCCTGATTATATCCCGCACGTTTGAAAAGCACATGAAGCACCTGGAGGCCGTAGCTGAATGTTTGAAGAAGGCCAATCTTACTATCGGGTTA-AAAAATCAAAATTTTGCTTTAGATTCTGTAAATACCTGGGATTTGTGATCGGAGATGGAAAATTAA----------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................ACATGAAGCACCTGGAGGCCGTAGC....................................................................................................................................	25	2	1.00	2	0	2	0	0	0
......................CGCTGTATCAGTTCCGCAGAATGC..............................................................................................................................................................................................................................................................................................	24	15	0.47	7	0	7	0	0	0
......................CGCTGTATCAGTTCCGCAGAATGCCT............................................................................................................................................................................................................................................................................................	26	15	0.20	3	2	1	0	0	0
......................CGCTGTATCAGTTCCGCAGAATG...............................................................................................................................................................................................................................................................................................	23	15	0.20	3	0	3	0	0	0
......................CGCTGTATCAGTTCCGCAGAATGCCTT...........................................................................................................................................................................................................................................................................................	27	15	0.20	3	0	3	0	0	0
..................................................................................GACTCATGGATAAGGTCATTCC....................................................................................................................................................................................................................................	22	7	0.14	1	0	1	0	0	0
....................................................................GCAGCGCTTATGCCGACTCATGG.................................................................................................................................................................................................................................................	23	7	0.14	1	0	1	0	0	0
.............................................................ATGCGGCGCAGCGCTTATGCCG.........................................................................................................................................................................................................................................................	22	7	0.14	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................ATACCTGGGATTTGTGATCGGAGATGG....................................	27	10	0.10	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................AATACCTGGGATTTGTGATCGGAGA.......................................	25	10	0.10	1	0	1	0	0	0
..............................................................................TGCCGACTCATGGATAAGGTCAT.......................................................................................................................................................................................................................................	23	11	0.09	1	0	0	1	0	0
....................CCCGCTGTATCAGTTCCGCAGAATGCCTT...........................................................................................................................................................................................................................................................................................	29	15	0.07	1	0	1	0	0	0
.......................GCTGTATCAGTTCCGCAGAATGC..............................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	1	0	0	0
...................................................................................................................................................................................................GTAGCTGAATGTTTGAAGAAGG...................................................................................................................	22	15	0.07	1	0	1	0	0	0
......................CGCTGTATCAGTTCCGCAGAATGCC.............................................................................................................................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0
.......................................................................................................................................................................................................CTGAATGTTTGAAGAAGGCCAAT..............................................................................................................	23	15	0.07	1	0	1	0	0	0
..............................CAGTTCCGCAGAATGCCTTTCGG.......................................................................................................................................................................................................................................................................................	23	16	0.06	1	0	1	0	0	0
................................GTTCCGCAGAATGCCTTTCGG.......................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	1	0	0	0

dp5

GCCTT--------------------------------------------TTAGTTTATGCAACGTCTTACAAACCATGTCCAGACTCATGGATAAGGTAATACCCGCAGCTCTCCGAAATCAAGTTTTTGTCTACTTGGATGACCTTCTGGTTATTTCAGACACATTTCCCTCGCATCTTGAGGTACTGCGTTCGGTGGCAGAACACATCCGTCACGCAGGGCTGACCATAAATATAGAGAAGAGCAGATTCTGTAGGAGATCCGTAAAATATTTAGTTCACGTAATTGGCGAAGGCGGCATTA--------------------AAACAGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................GCAGAACACATCCGTCACGCAGGG..............................................................................................................	24	3	5.00	15	0	15	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAGAACACATCCGTCACGCAGG...............................................................................................................	23	3	4.67	14	0	14	0	0	0	0	0	0	0	0
............................................................................................................................................................TCAGACACATTTCCCTCGCATCT.........................................................................................................................................................	23	3	3.67	11	0	11	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAGAACACATCCGTCACGCAGGGC.............................................................................................................	25	3	2.67	8	0	8	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GAAGAGCAGATTCTGTAGGAGATC.....................................................................	24	3	1.67	5	0	5	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TACTGCGTTCGGTGGCAGAACACA............................................................................................................................	24	3	1.33	4	0	4	0	0	0	0	0	0	0	0
..........................................................................CATGTCCAGACTCATGGATAAGG...........................................................................................................................................................................................................................................	23	3	1.33	4	0	4	0	0	0	0	0	0	0	0
............................................................................................................................TTTTTGTCTACTTGGATGACCTTC........................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................TTTTTGTCTACTTGGATGACCTTCTGG.....................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................TACAAACCATGTCCAGACTCATG..................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TGCGTTCGGTGGCAGAACACATCCG........................................................................................................................	25	3	1.00	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TGCGTTCGGTGGCAGAACACATCC.........................................................................................................................	24	3	1.00	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CTGACCATAAATATAGAGAAGAGC......................................................................................	24	3	1.00	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................TTTTTGTCTACTTGGATGACCTT.........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TTAGTTCACGTAATTGGCGAAGGC...................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TCGGTGGCAGAACACATCCGTCACGC..................................................................................................................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCTTGAGGTACTGCGTTCGGTGG.....................................................................................................................................	23	3	0.67	2	0	1	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................TAGAGAAGAGCAGATTCTGTAGG..........................................................................	23	3	0.67	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TACTGCGTTCGGTGGCAGAACACATC..........................................................................................................................	26	3	0.67	2	0	2	0	0	0	0	0	0	0	0
..........................................................................CATGTCCAGACTCATGGATAAGGTA.........................................................................................................................................................................................................................................	25	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................TCATGGATAAGGTAATACCCGC.................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................TCTTGAGGTACTGCGTTCGGTG......................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TGGCGAAGGCGGCATTA--------------------AAACAGAC	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TAGAGAAGAGCAGATTCTGTAGA..........................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TACTGCGTTCGGTGGCAGAACACATCCG........................................................................................................................	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TGAGGTACTGCGTTCGGTGGCAGAACAC.............................................................................................................................	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CTGACCATAAATATAGAGAAGAGCAG....................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CGGTGGCAGAACACATCCGTCACG...................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CAGAACACATCCGTCACGCAGG...............................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAGAACACATCCGTCACGCA.................................................................................................................	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................TCAGACACATTTCCCTCGCATCTT........................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TGAGGTACTGCGTTCGGTGGCAGAA................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TTCGGTGGCAGAACACATCCGTCACGC..................................................................................................................	27	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................TTTCAGACACATTTCCCTCGCATCT.........................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...........................................................................ATGTCCAGACTCATGGATAAGGTA.........................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTCCCTCGCATCTTGAGGTACTGCGT............................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GAAGAGCAGATTCTGTAGGAGATCC....................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CGGTGGCAGAACACATCCGTCACGC..................................................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTCCCTCGCATCTTGAGGTACTG...............................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TCGGTGGCAGAACACATCCGTG......................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................CAGACACATTTCCCTCGCATCTTGAG.....................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGACCATAAATATAGAGAAGAGCAG....................................................................................	25	3	0.33	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CTGACCATAAATATAGAGAAGAGCAGAT..................................................................................	28	3	0.33	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGACCATAAATATAGAGAAGAGCAGA...................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCCCTCGCATCTTGAGGTACTGCGTT...........................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TACTGCGTTCGGTGGCAGAACT..............................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ACTGCGTTCGGTGGCAGAACACA............................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GCAGAACACATCCGTCACGCAG................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCCC--------------------------------------------TTCGGGTTGTGCAATCCAGCCCAATGGCTGTTTCGGTTGATGGATCGAGTAATTGCACAACGACTCCGAAGCCATGTCTTTGTATACTTGGACGATCTACTAGTTATTTCACGGACGTTTGAGGAGCATATACAGCTGTTAGAGGAAGTGGCCAAGTGTCTCAAGGAGGCAAACCTAACAATTTAAAGAAAAAAATCGAAATTCGGCTATAAATATTTAAAGTATTTAGGGTACATCGTAGGCGACGGCGCACTTA--------------------GGACAGAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................GAAAAAAATCGAAATTCGGCT............................................................................	21	11	0.18	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TACATCGTAGGCGACGGCGCACTT.............................	24	8	0.13	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................TACATCGTAGGCGACGGCGCAC...............................	22	11	0.09	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................GTACATCGTAGGCGACGGCGC.................................	21	12	0.08	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................TACATCGTAGGCGACGGCGC.................................	20	12	0.08	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................GGTACATCGTAGGCGACGG....................................	19	12	0.08	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................TTAGGGTACATCGTAGGCGACGG....................................	23	12	0.08	1	0	0	0	0	0	1

droAna3

TT-----------------------------------------------TCGGTCTCC----AAGCGCTCAAACTCTGTGCAGATTGATGGATATTGTGATACCACCAACGTTGCGCACAAGAGTCTTCGTATATTTGGACGATTTGCTAGTTTTGTCCGAAGATTTCGAGTCACACATGACATTGCTCGAAGAAATCGCAAGCCACCTGCGTAAGGCAAACCTAACAATAAATATAGCTAAATCGAAGTTTTGCTTTACAGAGGTTAGATATCTGGGATATATCATTGGGCACGGCCAATTGA--------------------AAGTTGAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................TATTGTGATACCACCAACGTTGC.........................................................................................................................................................................................................................	23	15	0.20	3	3	0	0	0	0	0
........................................................................................................................................................TTTGTCCGAAGATTTCGAGTCACACATG........................................................................................................................................................	28	9	0.11	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TATCTGGGATATATCATTGGGCACGGC...................................	27	10	0.10	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TGGGATATATCATTGGGCACGG....................................	22	10	0.10	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................GGATATATCATTGGGCACGGCC..................................	22	13	0.08	1	0	1	0	0	0	0
.................................................................................................................................................TGCTAGTTTTGTCCGAAGATTTCG...................................................................................................................................................................	24	13	0.08	1	1	0	0	0	0	0
...............................................................................................TGTGATACCACCAACGTTGCGCACAAGA.................................................................................................................................................................................................................	28	13	0.08	1	1	0	0	0	0	0
........................................................................................................................AGAGTCTTCGTATATTTGGACGATT...........................................................................................................................................................................................	25	14	0.07	1	1	0	0	0	0	0
............................................................................................TATTGTGATACCACCAACGTTGCG........................................................................................................................................................................................................................	24	15	0.07	1	1	0	0	0	0	0
............................................................................................TATTGTGATACCACCAACGTTGCGCA......................................................................................................................................................................................................................	26	15	0.07	1	1	0	0	0	0	0
.............................................................................................ATTGTGATACCACCAACGTTGCG........................................................................................................................................................................................................................	23	15	0.07	1	1	0	0	0	0	0
............................................................................................TATTGTGATACCACCAACGTTGCGCAC.....................................................................................................................................................................................................................	27	15	0.07	1	1	0	0	0	0	0
.........................................................................................GGATATTGTGATACCACCAACGTTG..........................................................................................................................................................................................................................	25	15	0.07	1	1	0	0	0	0	0
....................................................................................................TACCACCAACGTTGCGCACAAGAGTCC.............................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0
....................................................................................................TACCACCAACGTTGCGCACAAGAGTCT.............................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0
........................................................................................TGGATATTGTGATACCACCAACGTT...........................................................................................................................................................................................................................	25	16	0.06	1	1	0	0	0	0	0
...................................................................................................ATACCACCAACGTTGCGCACAAGAG................................................................................................................................................................................................................	25	16	0.06	1	1	0	0	0	0	0
..........................................................................................GATATTGTGATACCACCAACG.............................................................................................................................................................................................................................	21	17	0.06	1	1	0	0	0	0	0
................................................................................CAGATTGATGGATATTGTGATACCACC.................................................................................................................................................................................................................................	27	18	0.06	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................AATATAGCTAAATCGAAGTTTTGC.............................................................................	24	18	0.06	1	0	0	1	0	0	0
.............................................................................................................................................................................................GAAGAAATCGCAAGCCACCTGCGTAAGG...................................................................................................................	28	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................GCTCGAAGAAATCGCAAGCCACCTGC.........................................................................................................................	26	20	0.05	1	0	1	0	0	0	0

droBip1

GCTTTCACGGTAGCGGGACGTCTGTTGTACCATTTCGTGGTTATGCCATTTTGGTTAACGAATGCAGCCCAGAGGTTGTGTTGGCTCACGGACAAAGTGATACGACAGGAACTCAGGGAAAGCGTCTTTGTGTACCTGGACGACTTGTTGGTGGTATCGGAAAACTTTCAGGACCACACGATGACGCTGGAGGAGGTTTCCAGAAGCTTGAAGGCGGCAGGACTGATAATAGGCCTGAAGAAATCGCACTTTTGTTTTAAGGAGCTGCGTTATCTGGGCTATGTGATTGACGGAGGAGTGGTGA--------------------GGACCGAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCATTTACGGTAGCGGGAAGGCCACTGTACCAGTTCGCGATGATGCCGTTCGGGCTGTGCAACGCGGCGCAGCGGCTTTGCCGGCTCATGGATCAGGTGATTCCCGCGCAGCTGAGGTCAAACGTGTTCGTCTACCTAGACGATCTGCTGATCATCACGCCGGACTTCGACACGCACATGAAGTACCTCAGTTTGGTGGCGGAATGTCTGAGGAAGGCAAATTTGACGATAGGGTTGAAAAAGTCAAAGTTTTGCTTCAAGACGCTGAAGTACCTGGGGTTCATCATCGGCGGAGGGACACTCC--------------------GAATGGAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TCGTCCAC-----------------TGTATCAGTTTCGGCGAATGCCGTTTGGTCTATGCAATTCGGCACAGCGATTATGCAGCGTGATGGATAAGGTGATACCACAGCGATTGCGCAGTCAAGTATTTGTGTACCTGGATGATTTGTTGATGATATCTAAGACCTTCGAAGAGCACTGCAGATTGCTGAAAGAAGTGGCAGAGTGTTTAAGGAAAGCGAATTTGACGATCGGTATGCAAAAATCCAAATTTTGTTTTAAATACTTACGATATTTGGGATATATCATCGGCGATAGAGCCTTTC--------------------GAACTGAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

------------------------------------------------------------AACGCCGCGCAAACACTCTGCAGGTTAATGGACTTAGTAATACCAGCTAGTCTGCGCACTCGGGTGTTTGTATACTTAGATGATTTGTTAATTTTGTCTGATGA-TTTGAGTCACACATGAAATTGCTAGAAGAGGTCGCTAGATATTTGCGAAAGGCTAATTTAACGATTAACATAGCAAAATCAAATTTTTGTATGACCGAGATCAAGTACTTAGGGTTCATCATAGGGCACGGACAGCTTA--------------------AAGTCGAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCATTTACGGTTCCT---------------------------------------------------------TGGTTGGTGAGACTTATGGACCGAGTGATCCCAGCTGAGATCCGCTCCAACGTTTTTGTCTACCTCGATGATCTGCTGATACTGGCTCCAGATATCCAGACCCACTTCAGGTACCTTCGGAGAGTCGCGGAATGCCTGAAAGCAGCGGGGTTAACGATAGGTATGAGTAAGTCAAAGTTTTGCTTCAAATCATTGACCTACCTGGGCTTTATCGTTGGTGGAGGTCGTCTAC--------------------GAATGGAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCATTCACGATTCCAGGCAGACCGTTGTACCAGTTTCGAATGATGCCTTTCAGGCTGTCCAACGCTGCACAACGCTTGGTGCGGCTTATGGATCGGGTGATACCAGCGGAACTCAGATCAAACGTCCTCGTATACTTGGGCGACCTGTTAATCCACGCTCCAGATTTTCAGACGCACTTGAAATACTTGCGTCGAGTAGCCCACAGTGTGAAATCAGCCGGATTGACTATAGGTTTAAAGAAGCCGAAGTTTTACTTCAAATCGTTGACTTACCTATGGTTTAAAGTCGGAGGTGGACTGCTGC--------------------GGATGGAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCTT---------------------------------------------TTGGGCTAACGAATGCCGCTCAGACTTTATGTAGGCTTATGGATCAAGTGATACCCGCCCATCTGCGAACGCGTGTTTTCGTCTATTTAGACGATCTTTTAGTGTTGTCCGATGATTTTGAATCTCATCTTATGTTGTTACGAGAAGTAGCGGTGCATTTACGGAAAGCTAATCTTACGATTAACGTAGCGAAGTCCAATTTCGTTCATTGTTGGA-----------TAATTCATAATTGGATATGGCCAACTTAAAACCGATCCTGGCAAAATTAAAGCAAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GCATTTACGATACCGAACAGGCCGTTATACCAATATAAAGTTATGCCTTTTGGTCTCTGTAATGCTGCCCAAACTTTGTGTAGATTGATGGATTTGGTTATCCCAGCGAAATAGCGTACGAGAGTATTTGTTTACTTAA----GCTCTTAGAGCTTTCTGAGGATTTCGAATCCCATATGAAACTATTAGAAGAAATAGCAAGTTATCTCCGTGATGCGAATTTTACGATAAACATAGCCAAATCA-AGTTCTGCGAGACCGAAATCAAATATTTAGGTTTTGTTATTGGTCATGGTGAGTTGA--------------------AAGTCGAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCGTTTACGGTGCCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

GSM154618
Ovary

GSM154620
Ovary

GSM154621
Ovary

GSM154622
Ovary

GSM180328
Head

GSM180329
Mixed-body

GSM180330
Embryo

GSM180331
Embryo

GSM180332
Embryo

GSM180333
Embryo

GSM180334
Larvae

GSM180335
Disc

GSM180336
Pupae

GSM180337
S2

GSM231091
Ovary

GSM239041
Head

GSM239050
Head

GSM239051
S2

GSM239052
S2

GSM246084
Head

GSM266765
S2

GSM280082
Ovary

GSM280083
Ovary

GSM280084
Ovary

GSM280085
Testis

GSM280086
Ovary

GSM280087
S2-NP

GSM280088
S2-NP

GSM312995
Head

GSM313160
Head

GSM313161
Head

GSM313162
Head

GSM313163
Head

GSM313164
Head

GSM313165
Head

GSM343287
Embryo

GSM379050
Ovary

GSM379051
Ovary

GSM379052
Ovary

GSM379053
Ovary

GSM379054
Ovary

GSM379055
Ovary

GSM379056
Ovary

GSM379057
Ovary

GSM379058
Ovary

GSM379059
Ovary

GSM379060
Ovary

GSM379061
Ovary

GSM379062
Ovary

GSM379063
Ovary

GSM379064
Ovary

GSM379065
Ovary

GSM379066
Ovary

GSM379067
Ovary

GSM424739
S2

GSM424740
S2

GSM424741
S2

GSM467729
Female-body

GSM467730
Female-body

GSM467731
Female-body

M002
CS

M003
Male-body

M004
Male-body

M005
ML-DmD32

M006
ML-DmD32

M029
OSC

M030
OSC

M031
OSC

M032
S2-R+

M033
S2-R+

M034
S2-R+

M035
S2-R+

M036
S2-R+

M037
S2-R+

M038
S2-R+

M039
S2-R+

M048
S2-R+

OSS2
OSS

OSS6
OSS

OSS7
OSS

OSS8
OSS

S1
Head

S10
Embryo

S11
Embryo

S12
Embryo

S13
Embryo

S14
Embryo

S15
S2-GMR

S16
Kc

S17
Larvae

S18
Larvae

S19
Pupae

S2
Head

S20
Pupae

S21
Disc

S22
Head

S23
Female-body

S24
Male-body

S25
Larvae

S26
Larvae

S27
Pupae

S28
Pupae

S29
Head

S3
Male-body

S30
S2-GMR

S31
S2

S32
S2

S33
Kc

S34
Kc

S35
Kc

S4
Female-body

S5
Disc

S6
Embryo

S7
Embryo

S8
S2

S9
Embryo

SRR001337
Head

SRR001338
Head

SRR001339
Head

SRR001340
Head

SRR001341
Head

SRR001342
Head

SRR001343
Head

SRR001344
Head

SRR001345
Head

SRR001346
Head

SRR001347
Head

SRR001348
Head

SRR001349
Head

SRR001664
Head

SRR010951
Ovary

SRR010952
Ovary

SRR010953
Ovary

SRR010954
Ovary

SRR010955
Ovary

SRR010956
Ovary

SRR010957
Ovary

SRR010958
Ovary

SRR010959
Ovary

SRR010960
Ovary

SRR014268
Embryo

SRR014269
Embryo

SRR014270
Embryo

SRR014271
Embryo

SRR014272
Embryo

SRR014273
Ovary

SRR014274
Ovary

SRR014275
Ovary

SRR014276
Ovary

SRR014277
Ovary

SRR014278
Ovary

SRR014279
Ovary

SRR014280
Ovary

SRR014281
Ovary

SRR014282
Ovary

SRR023197
S2

SRR023399
S2

SRR023400
S2

SRR023402
S2

SRR023407
S2

SRR029028
S2

SRR029029
S2

SRR029030
S2

SRR029031
S2

SRR029032
S2

SRR029033
S2

SRR029608
Head

SRR029633
Head

SRR030145
gb3

SRR031692
Head

SRR031693
Head

SRR031694
Head

SRR031696
Head

SRR031697
Head

SRR031698
Head

SRR031699
Head

SRR031700
Head

SRR031701
Head

SRR031702
Head

SRR031703
Head

SRR031704
Head

SRR032092
S2

SRR032093
S2

SRR032094
S2

SRR032095
S2-NP

SRR032096
S2-NP

SRR032152
Head

SRR060643
Testis

SRR060644
Ovary

SRR060645
Testis

SRR060646
Ovary

SRR060647
Ovary

SRR060648
Ovary

SRR060649
Ovary

SRR060650
Testis

SRR060651
Ovary

SRR060652
Testis

SRR060653
Ovary

SRR065151
Ovary

SRR065152
Ovary

SRR065153
Ovary

SRR065154
Ovary

SRR065155
Ovary

SRR065800
Ovary

SRR065801
Ovary

SRR065802
Ovary

SRR065803
Ovary

SRR065804
Ovary

SRR065805
Ovary

SRR065806
Ovary

SRR065807
Ovary

SRR097865
S2-NP

SRR097866
S2-NP

SRR097867
S2-NP

SRR298536
Ovary

SRR298537
Ovary

SRR298711
Ovary

SRR298712
Ovary

SRR317110
Ovary

SRR317111
Ovary

SRR317112
Ovary

SRR317113
Ovary

SRR317114
Ovary

SRR317115
Ovary

SRR317116
Ovary

SRR317117
Ovary

SRR341115
S2

SRR341116
S2

SRR341117
S2

SRR341118
S2

SRR351332
Mixed-body

SRR351333
Mixed-body

T004
OSC

T005
CME-L1

V001
Embryo

V002
Embryo

V003
S2

V006
Female-body

V007
Head

V008
S2

V009
CME-L1

V010
ML-DmD20-C5

V011
Sg4

V012
Male-body

V013
Head

V014
DTT

V015
DreRFHV

V018
Kc167

V019
GM2

V020
S2-R+

V021
ML-DmD21

V022
ML-DmD32

V023
Head

V024
Kc167

V025
S2-R+

V026
1182-2H

V027
ML-DmD21

V028
CME-W1-Cl.8+

V029
ML-DmD9

V030
ML-DmD8

V031
GM2

V032
S1

V033
CME-W1-Cl.8+

V034
ML-DmD16-C3

V035
ML-DmD32

V036
ML-DmD20-C5

V037
S2

V038
S2

V063
Ovary

V0632
Ovary

V064
Ovary

V0642
Ovary

V065
Ovary

V0652
Ovary

V066
Ovary

V0662
Ovary

V067
S2-NP

V073
mbn2

V074
S3

V075
ML-DmBG1-C1

V076
ML-DmBG3-C2

V077
Head

V078
Head

V079
Head

V080
Head

V081
Embryo

V082
Embryo

V083
Male-body

V084
Female-body

V085
CME-W2

V086
Female-body

V088
Ovary

V0882
Ovary

V089
Ovary

V0892
Ovary

V090
Male-body

V091
fGS/OSS

V092
Male-body

V093
Male-body

V094
S2-R+

V095
S2-R+

V096
Ovary

V097
Ovary

V098
Ovary

V125
ML-DmD9

V126
CME-L1

V127
G2

V128
S3

V129
ML-DmBG1-C1

V130
ML-DmBG3-C2

V131
ML-DmD16-C3

V132
ML-DmD32

V133
Sg4

V134
ML-DmD8

V135
CME-W2

V136
Male-body

V137
Head

V138
Male-body

V139
Female-body

V140
Female-body

V141
Female-body

V142
Female-body

V144
OSC

V145
S2

V146
S1

V147
1182-2H

V148
mbn2

GSM1528798
follicle cells

No Reads

droSim2

GCGTTCACAATTCCTGGGAGACCGTTGTATCAGTTCCGGATGATGCCATTCGGACTGTGCAACGCAGCGCAACGCTTGGTAAGTCTAATGGACCGGGTGATACCAGCGGACCTGAGATCGAACGTTTTTGTGTATCTGGTTGACCTTCCAATCTTGGCTTCCAATTACCAGACCCACTTAAAGTACCTGCTTGGAGTGGCCCAGGGCCTGAAATCAGCTTGTTTAACAATCGGCCTACAAAAATCATAATTTTGCCTTAAAGCATTGACTTACCTCGTGTATATAGTTGGAGGGGGGCTG-TGCGCATGAACCCAGGGCTAGTTTCGGCGAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................TAAGTCTAATGGACCGGGTGATA......................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................TAAGTCTAATGGACCGGGTGATACCA...................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................TGCCATTCGGACTGTG.................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................GCTTCCAATTACCAGACC..............................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTCCAATCTTGGCTTCCAATTACCAGA................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................CCGGGTGATACCAGCGGACCTGAG........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................AGCGGACCTGAGATCGAACGTTTT............................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................CGCAGCGCAACGCTTGGTAAGTCTAA....................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AGTACCTGCTTGGAGTGGCCCAGGGC.............................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................GGACCTGAGATCGAACGTTTTTGTG........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................TGCCATTCGGACTGTGCAACGCAGCG.......................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................TGAGATCGAACGTTTTTGTGTAT.....................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................TTGGAGTGGCCCAGGGCCTGAAATC.....................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................TACCAGCGGACCTGAGATCGAACGTTT.............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................TAAGTCTAATGGACCGGGTGATACCAGC.................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................TAAGTCTAATGGACCGGGTGATAC.....................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................TCGAACGTTTTTGTGTATCTGGTTGACC...........................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................AACGTTTTTGTGTATC....................................................................................................................................................................................................	16	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................GCCATTCGGACTGTT.................................................................................................................................................................................................................................................................................	15	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

GCGTTTACGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

GCAT---------------------------------------------TCGGTCTCACCAACGCTTCTCAAACTATGACTAGATTGATGGACAAGGTTATTCCCGCAAATCTGAGAAATGAGGTTTTCGTGTATCTGGATTACCTGCTCATAGTACCAGATAGCTTTGAGGCTCACATGAGGGTGTTAGGCTTAGTGGCGAGCTATGTAAAAACAGCAGGGTTAACTCTCAATGTCGAGAAAAGCAAGTTCTGCATGCGTACTGTCAAGTATCTGGGCCATATTGTCGGGGAGGGCGTT--------------------------ACAGAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................AATGTCGAGAAAAGCAAGTTCTGC.............................................................................	24	13	0.85	11	3	5	2	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................CGTACTGTCAAGTATCTGGGCCATATT...............................................	27	13	0.38	5	0	0	0	0	0	0	0	0	0	0	5
.......................................................................................................................................................................................................................................AATGTCGAGAAAAGCAAGTTCTGCA............................................................................	25	13	0.38	5	0	5	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GAGGGTGTTAGGCTTAGTGGC....................................................................................................................................	21	17	0.18	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................TGTCAAGTATCTGGGCCATATTGTC............................................	25	17	0.18	3	0	2	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTCTGCATGCGTACTGTCAAGTATC..........................................................	25	13	0.15	2	0	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ATGTCGAGAAAAGCAAGTTCTGC.............................................................................	23	13	0.15	2	0	1	1	0	0	0	0	0	0	0	0
.....................................................................................TGATGGACAAGGTTATTCCCGCAAA..............................................................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................TCACCAACGCTTCTCAAACTATGACT...........................................................................................................................................................................................................................................................	26	19	0.11	2	0	1	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGAGGGTGTTAGGCTTAGTGGCGA..................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTGTTAGGCTTAGTGGCGAGCTATG............................................................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGAGGGTGTTAGGCTTAGTGGCGAG.................................................................................................................................	25	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................GGTGTTAGGCTTAGTGGCGAGC................................................................................................................................	22	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GAGAAAAGCAAGTTCTGCATGCGT.......................................................................	24	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ATGTCGAGAAAAGCAAGTTCTGCATGC.........................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AATGTCGAGAAAAGCAAGTTCTGCATGC.........................................................................	28	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TGCATGCGTACTGTCAAGTATCTGGGC.....................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AAAACAGCAGGGTTAACTCTCAA...................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CAATGTCGAGAAAAGCAAGTTCTGCA............................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TCGAGAAAAGCAAGTTCTGCATGCGTA......................................................................	27	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCTGCATGCGTACTGTCAAGTATCTG........................................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AATGTCGAGAAAAGCAAGTTCTGCATG..........................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CAAGTTCTGCATGCGTACTGTCAAGTA............................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGGTTAACTCTCAATGTCGAGAAAAGC......................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................CTAGATTGATGGACAAGGTTATT......................................................................................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AATGTCGAGAAAAGCAAGTTCTGCT............................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TACTGTCAAGTATCTGGGCCATATTG..............................................	26	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGTAAAAACAGCAGGGTTAACTCT......................................................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GAGAAAAGCAAGTTCTGCATG..........................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TATGTAAAAACAGCAGGGTTAACTC.......................................................................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................TGCATGCGTACTGTCAAGTATCTGG.......................................................	25	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TCAATGTCGAGAAAAGCAAGTTC................................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................TGCGTACTGTCAAGTATCTGGGCCA...................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TACTGTCAAGTATCTGGGCCAT..................................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATGCGTACTGTCAAGTATCTGGGC.....................................................	24	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAACTCTCAATGTCGAGAAAAGCAAG...................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TTGAGGCTCACATGAGGGTGTTAGG.............................................................................................................................................	25	14	0.07	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................CAAACTATGACTAGATTGATGGACA..............................................................................................................................................................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AATGTCGAGAAAAGCAAGTTCTG..............................................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................TATGACTAGATTGATGGACAAGGT..........................................................................................................................................................................................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................TATGACTAGATTGATGGACAAGGTTA........................................................................................................................................................................................................................................	26	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................ATGACTAGATTGATGGACAAGG...........................................................................................................................................................................................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AATGTCGAGAAAAGCAAGTTCT...............................................................................	22	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TATCTGGGCCATATTGTCGGGGAGG.....................................	25	15	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................GTATCTGGGCCATATTGTCGGGGAG......................................	25	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TATCTGGGCCATATTGTCGGGGAG......................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................CTGTCAAGTATCTGGGCCATATTGTC............................................	26	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................CTGTCAAGTATCTGGGCCATATTG..............................................	24	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TGAGGGTGTTAGGCTTAGTGGC....................................................................................................................................	22	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................TCTCACCAACGCTTCTCAAACTATGAC............................................................................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TCTGGGCCATATTGTCGGGGAGGGCGT.................................	27	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................GCTTCTCAAACTATGACTAGATTGATG..................................................................................................................................................................................................................................................	27	16	0.06	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GTCAAGTATCTGGGCCATATTGTC............................................	24	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................CAAACTATGACTAGATTGATG..................................................................................................................................................................................................................................................	21	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................AGGGTGTTAGGCTTAGTGGC....................................................................................................................................	20	18	0.06	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................TCACCAACGCTTCTCAAACTATGA.............................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................TCACCAACGCTTCTCAAACTATGACTA..........................................................................................................................................................................................................................................................	27	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................TCACCAACGCTTCTCAAACTATGAC............................................................................................................................................................................................................................................................	25	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................TCACCAACGCTTCTCAAACTATG..............................................................................................................................................................................................................................................................	23	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GCGTATACGGTTGCCGGGAGGGCTTTGTACCAATTCGCAATGATGCCGTTCGGCCTGTGCAATGCGGCGCAGAGGCTCTATCGCCTGATGGACGAGGTGATTCCCGCGCAGTTGAGATCGAACGTCTTTGCCTACCTCAACGATCTGCTCATCATCGCGCCGGACTTCGAAACCCATCTGAAGTACCTCCGGTTGGTAACGGCATGCCTGAAAAAAGCAAATCTGACGATAGGTGTTAAGAAGTCAACATTTTTCTATAAGGCGTTAAAATACCTCGGATTCATAATCGGTGGAGGTACACTTC--------------------GGATGGA-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_21426

scaffold_13324:1922521-1922671 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads