dvi_21390

CDS [Dvir\GJ20040-cds]; CDS [Dvir\GJ20040-cds]; exon [dvir_GLEANR_55:1]; exon [dvir_GLEANR_55:2]; intron [Dvir\GJ20040-in]

##################################################------------------------------------------------------------------################################################## CTTGAAAACGGTTAAGGTGAAGACCGAACCCTTTTCCACTCTATCGCCAGGTGAGAAAGGCAGCGTGAATTCCTTAATAAACAATAACATGCTGTTTTTTTGATTTTTTTTTTTAGAGAACGCAAGCAATCAAAACCAAACCATGTCAGATGAAGTGGACGCACCT ************************************************((.((((((((((((((....................)))))))))))))).))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M027 male body	SRR060660 Argentina_ovaries_total	SRR060661 160x9_0-2h_embryos_total	SRR060678 9x140_testes_total	SRR060682 9x140_0-2h_embryos_total	SRR060684 140x9_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	V047 embryo	SRR060689 160x9_testes_total	SRR060659 Argentina_testes_total	SRR060662 9x160_0-2h_embryos_total	SRR060687 9_0-2h_embryos_total
...................................................................................................................GAGAACGCAAGCAATCAAAACCAA...........................	24	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0
............................CCCTTTTCCACTCTATCGCCAGAGA.................................................................................................................	25	3	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................CTTAATAAACAATAACATGCTGTTTT....................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0
................................TTTCCACTCTATCGCCAGA...................................................................................................................	19	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................ACCATGTCAGATGAAGTG.........	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0
......AACGGTTAGGGTGAAGAC..............................................................................................................................................	18	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................ATGTCAGATGAAGTGTAC......	18	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................GTGAGATGAAGTGGACGTA...	19	2	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0
...................................................TGAGAAAGGAAGTGTGTATTCC.............................................................................................	22	3	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0
.........GATTAAGGTGAAGTCGGAAC.........................................................................................................................................	20	3	6	0.17	1	0	0	0	0	0	0	0	0	0	1	0	0
......................................................GTAAGGCAGCGCGGATTCC.............................................................................................	19	3	10	0.10	1	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................GCTGTTTTCTTGATTTTTTGT.......................................................	21	2	11	0.09	1	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................GTTGTATTTTTAGAGAACG............................................	19	3	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1

GAACTTTTGCCAATTCCACTTCTGGCTTGGGAAAAGGTGAGATAGCGGTCCACTCTTTCCGTCGCACTTAAGGAATTATTTGTTATTGTACGACAAAAAAACTAAAAAAAAAAATCTCTTGCGTTCGTTAGTTTTGGTTTGGTACAGTCTACTTCACCTGCGTGGA ************************************************((.((((((((((((((....................)))))))))))))).))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060662 9x160_0-2h_embryos_total	SRR060663 160_0-2h_embryos_total	V116 male body	SRR060667 160_females_carcasses_total	SRR060659 Argentina_testes_total	V053 head	SRR060657 140_testes_total	SRR060661 160x9_0-2h_embryos_total	SRR060677 Argx9_ovaries_total	SRR060684 140x9_0-2h_embryos_total
...........................................................................................................................................TGGTACAGACTAGTTCACG........	19	3	14	0.43	6	0	1	3	0	2	0	0	0	0	0
.....................CTGGTTTGGGAAAAAGTG...............................................................................................................................	18	2	4	0.25	1	1	0	0	0	0	0	0	0	0	0
.....................CTGGTTTGGGAAAAAGTGGG.............................................................................................................................	20	3	4	0.25	1	0	0	0	1	0	0	0	0	0	0
................................CAAGGTGAGATAGCGGAC....................................................................................................................	18	2	5	0.20	1	1	0	0	0	0	0	0	0	0	0
.....................CTGGTTTGGGAAGAGGTG...............................................................................................................................	18	2	13	0.15	2	0	0	0	0	0	1	1	0	0	0
...........................................................................................................................................TGGTACAGACTACTTTAC.........	18	2	8	0.13	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................TTTGGTACAGACTAGTTTAC.........	20	3	17	0.12	2	0	0	1	0	0	0	0	1	0	0
...............................................................................................................................................TCGGTCTACTTCACCTGGGT...	20	3	9	0.11	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................TGTGGTACAGTCTAGTTTAC.........	20	3	11	0.09	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................AAAAAAAAAAGCTCTGGCG...........................................	19	2	17	0.06	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................AAAAAAAAATTTTTTGTGTTCGT......................................	23	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................TGGTACAGACTACTTTACG........	19	3	20	0.05	1	0	0	0	0	1	0	0	0	0	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_13052:1057690-1057855 -	dvi_21390	CTTGAAAACGGTT-----------------------------AAGGTGAAGACCGAACCCTTTTCCACTCTATCGCCAGGTGAGAAAGGCAGCGTGAATTCCTTAATAA------------------ACAATAACATGCTGTT-------------TTTTTGATT------T-----------------------TTTTTTTTAGAGAACGCAAGCAATCAAAACCAAA------------------------------------------------CCATGTCAGATGAAGTGGACGC-ACCT
droMoj3	scaffold_6498:949360-949528 -		CTTGAAAGCGGTG-----------------------------AAAGTAAAAGCCGAGCCCTATTCAACTCTATCGCCAGGTGGGCTAAA-T--------------------AG--------------AC-----AATTTTA----------T----CAA------TGATGTATTTCTTTTTATTTTTCGTCATTTATTTACTCAGAGAACGCAAGTAATC--------------------------AAACGAAT-CAAA------------------CCATGTCAGATGAGGCGGATAC-ATCT
droGri2	scaffold_14822:1060649-1060765 +		CAACCAC--GGTT-----------------------------AAGGTAAAAAGCGAACCGTTTTCCACTCTATTGCCAGGTAAGAAAATAATAATAAAT----AAATAAGCA----------------TTCAT----TTAT------------------TTATTTTTATTT------------------------ATTTGTTTAAAAAACAA------------------------------------------------------------------------------------------AA
droWil2	scf2_1100000004558:2584067-2584217 -		ATCCTAAG--GCA-----------------------------A-AATAAGA---------------------------------------AGCGTAAGT--------------------TTA-CAAAATAACAAAATGTTA-----TAGTTA-------------AAATTAATTTCATTCTATTTTTAATC---------TTGAGCAGCATCGAA---AAA--------GAAAG--CC---------AGC---ATG--------GAGGCCAAAGAAGATGGAAAGGAAAAAGGAAAAGA-ATCT
dp5	XR_group6:6489046-6489131 +		TTGATGAACAATA-----------------------------A---------------------------------------------------------------------------------------------------TAATGAAGTTCCTTTGGAGAATG------TTT-------------------------------------TGAGCAATG----AAAAACAGCAGCAG---------ATCGAA-------------------------A--------TTGAGTATCAGC-AGCA
droPer2	scaffold_82:108751-108830 -		TTGATGAACAATA-----------------------------A---------------------------------------------------------------------------------------------------TAATGAAGTTCCTTTGGAGAATG------TTT-------------------------------------CGAGCAATG----AAAAACAGCAGCAG---------ATCGAA---------------------------------------ATTGAGT-ATCA
droAna3	scaffold_13337:12854354-12854425 -		TGCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------GCGTTT------TTG------------------------------CTTTTTCTGGGCAACA----AGTA---------AAAATAATTAATTATAGAT--------AAA---------TGT-------------GTGCGAC-GCGT
droBip1	scf7180000395933:148836-148916 -		TGCTGT----------------------------------------------------------------------------------------------------------------------------------------TTCTGCTGCT-------------------T-----------------------TTTTCGGCAGACAATGGCAA---TC----------AGC-------------AATAGCAACTAGAACGGG-------------CAAAGCCA-----GCAAACGGC-AATT
droKik1	scf7180000302610:1229111-1229178 -		AAAAAAC--AACA-----------------------------------------------------------------------------------------------------------------------------TGG----------C----TGT------TGACTTGTC------------------------TCTTTCAACAACAAC----------------------------------------------------------------AATTGCCAATTGCAATAGCAAC-ATTA
droFic1	scf7180000454044:330120-330205 +		TATTAA----------------------------------------------------------------------------------------------------------------------------------------TTGTTAACATCATTTGTTTGTTT------TTG------------------------------CTTTTCAGAAG-----------TAGCAGCAGCAA---------CGCAAA------------------------TCTTGTGA-TCAACGGCCTTAC-GTCA
droEle1	scf7180000491238:844958-845083 +		TGAAGA----------------------------------------------TCGAGCCCTTTTCCACTCTGTCTCCGGGTGAGTCGAC-C--------------------GCGCATTTATT-TATAATTGCTG-GAGTCC-----TAATAC-------------CAATTG-----GCTGTA------------------TTCCCAGATCAA----------ATCAAAA------------------------------------------------TAATGCC---------GGACGA-AAGT
droRho1	scf7180000776871:18126-18296 +		ATTGGGAACGGGGTGGCAGGCTCTAGCAGGAGCTCTCCAAAGAGTATGAAAAGCGAACCCTTTTCCACTCTGTCTCCGGGTAAGTCGATCGC-----------------------TTTTATTTTACACTTAAT----GTGT-----TAATAT-------------CAATTC-----GCTCTA------------------TTTTAAGATCAAA----------TAAAAA------------------------------------------------TAATGCCAGAAG------AAGT-GGCA
droBia1	scf7180000301760:4979397-4979453 +		TCGCTTT--TGCT-----------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAAAAACGCAC----------AA--------------------------------------TGA----------CCTTGCCCACAAACACACACGC-ATCT
droTak1	scf7180000415195:75540-75596 -		TTGCTTT--TGCT-----------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAAAAACGCAC----------AA--------------------------------------TGA----------CCTTGCCCACAAACACACACGC-ATCT
droEug1	scf7180000409093:121087-121191 -		TACTGGAAAATAA---------------------------------------------------------------------------------------------------------------------------------CTGCCTAAGCTGTTTTTTTGTTT------TGG------------------------------TGTGTGCGGAA-----------AAACGAGAGTGAAGAAAATGCTGTTCAAC----------------------AAATGCCTGGAAAAGTTGTCCA-GCTC
dm3	chr3R:199757-199815 -		TTAAAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------GAG---------CCTCTACCAGCAGAAGAAGCAGC-AA-C
droSim2	2r:7813213-7813262 +		AAACCGCA--GGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC----------AGTACAAG---------ACCAA-------------------------TAAAGTGA-----ACAATACGCGACGT
droSec2	scaffold_4:4792819-4792878 -		TTAAAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------GAG---------CCTCTACCAGCAGCAGAAGCAGC-AACA
droYak3	3L:4056878-4056955 +		TACTAA----------------------------------------------------------------------------------------------------------------------------------------TTTTCAAATT-------------------C-----------------------TTGTATTTAGATGCCGCCAA---TGG--------GAACA--CG---------ACC---ACG--------AAT-------------CCTCAACAGCAGTCGAATC-A-AC
droEre2	scaffold_4784:12689626-12689668 -		CGCGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA-AATTCAGA------------------------------------------------TCACGTTAACC--CATTGGCGC-GCCT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CTTGAAAACGGTT-----------------------------AAGGTGAAGACCGAACCCTTTTCCACTCTATCGCCAGGTGAGAAAGGCAGCGTGAATTCCTTAATAA------------------ACAATAACATGCTGTT-------------TTTTTGATT------T-----------------------TTTTTTTTAGAGAACGCAAGCAATCAAAACCAAA------------------------------------------------CCATGTCAGATGAAGTGGACGC-ACCT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................GAGAACGCAAGCAATCAAAACCAA............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................CCCTTTTCCACTCTATCGCCAGAGA..............................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CTTAATAA------------------ACAATAACATGCTGTT-------------TT..................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................TTTCCACTCTATCGCCAGA................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................A------------------------------------------------CCATGTCAGATGAAGTG..........	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CTTGAAAGCGGTG-----------------------------AAAGTAAAAGCCGAGCCCTATTCAACTCTATCGCCAGGTGGGCTAAA-T--------------------AG--------------AC-----AATTTTA----------T----CAA------TGATGTATTTCTTTTTATTTTTCGTCATTTATTTACTCAGAGAACGCAAGTAATC--------------------------AAACGAAT-CAAA------------------CCATGTCAGATGAGGCGGATAC-ATCT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................TTCGTCATTTATTTACTCAGAGAACG.............................................................................................	26	1	1.00	1	1	0	0	0	0	0

droGri2

CAACCAC--GGTT-----------------------------AAGGTAAAAAGCGAACCGTTTTCCACTCTATTGCCAGGTAAGAAAATAATAATAAAT----AAATAAGCA----------------TTCAT----TTAT------------------TTATTTTTATTT------------------------ATTTGTTTAAAAAACAA------------------------------------------------------------------------------------------AA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

ATCCTAAG--GCA-----------------------------A-AATAAGA---------------------------------------AGCGTAAGT--------------------TTA-CAAAATAACAAAATGTTA-----TAGTTA-------------AAATTAATTTCATTCTATTTTTAATC---------TTGAGCAGCATCGAA---AAA--------GAAAG--CC---------AGC---ATG--------GAGGCCAAAGAAGATGGAAAGGAAAAAGGAAAAGA-ATCT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................A--------GAAAG--CC---------AGC---ATG--------GAGGCC..................................	20	1	1.00	1	0	1	0	0	0

dp5

TTGATGAACAATA-----------------------------A---------------------------------------------------------------------------------------------------TAATGAAGTTCCTTTGGAGAATG------TTT-------------------------------------TGAGCAATG----AAAAACAGCAGCAG---------ATCGAA-------------------------A--------TTGAGTATCAGC-AGCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................TTTGGAGAATG------TTT-------------------------------------TGAGC........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AATG----AAAAACAGCAGCAG---------AT.......................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AAAAACAGCAGCAG---------ATCGAA-------------------------A--------TTG..............	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................TGAGCAATG----AAAAACAGCAGCAG---------AT.......................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................TT-------------------------------------TGAGCAATG----AAAAACAGCAGCAG---------.........................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................ATGAAGTTCCTTTGGAGAATG------.....................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AAAAACAGCAGCAG---------ATCGAA-------------------------..........................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................AAACAGCAGCAG---------ATCGAA-------------------------A--------.................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................AGCAGCAG---------ATCGAA-------------------------A--------TTGAGTAT.........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................TT-------------------------------------TGAGCAATG----AAAAACAGCAGCA...................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTGATGAACAATA-----------------------------A---------------------------------------------------------------------------------------------------TAATGAAGTTCCTTTGGAGAATG------TTT-------------------------------------CGAGCAATG----AAAAACAGCAGCAG---------ATCGAA---------------------------------------ATTGAGT-ATCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................TCCTTTGGAGAATG------TTT-------------------------------------CGAGC........................................................................................	22	1	1.00	1	1	0	0	0	0	0
............A-----------------------------A---------------------------------------------------------------------------------------------------TAATGAAGTTCCTTTGGA................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0

droAna3

TGCTTTT--------------------------------------------------------------------------------------------------------------------------------------------------------GCGTTT------TTG------------------------------CTTTTTCTGGGCAACA----AGTA---------AAAATAATTAATTATAGAT--------AAA---------TGT-------------GTGCGAC-GCGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................GTTT------TTG------------------------------CTTTTTCTGGGC........................................................................................	19	1	1.00	1	0	1	0	0	0	0

droBip1

TGCTGT----------------------------------------------------------------------------------------------------------------------------------------TTCTGCTGCT-------------------T-----------------------TTTTCGGCAGACAATGGCAA---TC----------AGC-------------AATAGCAACTAGAACGGG-------------CAAAGCCA-----GCAAACGGC-AATT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAAAAC--AACA-----------------------------------------------------------------------------------------------------------------------------TGG----------C----TGT------TGACTTGTC------------------------TCTTTCAACAACAAC----------------------------------------------------------------AATTGCCAATTGCAATAGCAAC-ATTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TATTAA----------------------------------------------------------------------------------------------------------------------------------------TTGTTAACATCATTTGTTTGTTT------TTG------------------------------CTTTTCAGAAG-----------TAGCAGCAGCAA---------CGCAAA------------------------TCTTGTGA-TCAACGGCCTTAC-GTCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGAAGA----------------------------------------------TCGAGCCCTTTTCCACTCTGTCTCCGGGTGAGTCGAC-C--------------------GCGCATTTATT-TATAATTGCTG-GAGTCC-----TAATAC-------------CAATTG-----GCTGTA------------------TTCCCAGATCAA----------ATCAAAA------------------------------------------------TAATGCC---------GGACGA-AAGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTGGGAACGGGGTGGCAGGCTCTAGCAGGAGCTCTCCAAAGAGTATGAAAAGCGAACCCTTTTCCACTCTGTCTCCGGGTAAGTCGATCGC-----------------------TTTTATTTTACACTTAAT----GTGT-----TAATAT-------------CAATTC-----GCTCTA------------------TTTTAAGATCAAA----------TAAAAA------------------------------------------------TAATGCCAGAAG------AAGT-GGCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCGCTTT--TGCT-----------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAAAAACGCAC----------AA--------------------------------------TGA----------CCTTGCCCACAAACACACACGC-ATCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTGCTTT--TGCT-----------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAAAAACGCAC----------AA--------------------------------------TGA----------CCTTGCCCACAAACACACACGC-ATCT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TACTGGAAAATAA---------------------------------------------------------------------------------------------------------------------------------CTGCCTAAGCTGTTTTTTTGTTT------TGG------------------------------TGTGTGCGGAA-----------AAACGAGAGTGAAGAAAATGCTGTTCAAC----------------------AAATGCCTGGAAAAGTTGTCCA-GCTC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTAAAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------GAG---------CCTCTACCAGCAGAAGAAGCAGC-AA-C	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................................................................................................................GTCAAATTCAAAG--------GAG---------CCTCTACCA...................	25	20	3.40	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	65	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GTCAAATTCAAAG--------GAG---------CCTCTACC....................	24	20	3.10	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCAAAG--------GAG---------CCTCTACCAGCAGATC............	25	2	3.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCAGATC............	24	2	3.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TCAAATTCAAAG--------GAG---------CCTCTACCAG..................	25	20	2.20	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TCTACCAGCAGAAGAAGCAGC-....	21	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCAGA..............	22	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------GA......................................	26	20	1.35	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	2	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................GTCAAATTCAAAG--------GAG---------CCTC........................	20	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCAAAG--------GAG---------CCTCTACCAG..................	19	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...............................................................................................................................................................................................................................................GGAAGTCAAATTCAAAG--------GAG---------C...........................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................................................................................................................TCAAATTCAAAG--------GAG---------CCTCTACCA...................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................GAAGTCAAATTCAAAG--------GAG---------CCTA........................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GTCAAATTCAAAG--------GAG---------CCTAA.......................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AATTCAAAG--------GAG---------CCTCTACCA...................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------G.......................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AAATTCAAAG--------GAG---------CCTCTACCAGC.................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................AG--------GAG---------CCTCTACCAGCAG...............	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................GAAGTCAAATTCAAAG--------GAG---------CC..........................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------GAT---------............................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................AAAG--------GAG---------CCTCTACCAGCA................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAT--------........................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AAGTCAAATTCAAAG--------GAG---------CCC.........................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAACCGCA--GGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC----------AGTACAAG---------ACCAA-------------------------TAAAGTGA-----ACAATACGCGACGT

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

TTAAAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------GAG---------CCTCTACCAGCAGCAGAAGCAGC-AACA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................................................ATTCAAAG--------GAG---------CCTCTACCAG..................	21	12	4.25	51	0	0	50	1
..........................................................................................................................................................................................................................................................TCAAAG--------GAG---------CCTCTACCAG..................	19	20	2.25	45	0	0	45	0
....................................................................................................................................................................................................................................................TCAAATTCAAAG--------GAG---------CCTCTACCAG..................	25	12	1.75	21	0	0	21	0
........................................................................................................................................................................................................................................................ATTCAAAG--------GAG---------CCTCTACCAGCAG...............	24	12	1.67	20	0	0	20	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAG..................	18	20	1.65	33	0	0	33	0
..............................................................................................................................................................................................................................................................AG--------GAG---------CCTCTACCAGCAG...............	18	20	1.60	32	0	0	32	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCAG...............	21	20	1.45	29	0	1	28	0
..........................................................................................................................................................................................................................................................TCAAAG--------GAG---------CCTCTACCAGCAG...............	22	20	1.20	24	0	0	24	0
.........................................................................................................................................................................................................................................................TTCAAAG--------GAG---------CCTCTACCAG..................	20	12	1.17	14	0	0	14	0
........................................................................................................................................................................................................................................................ATTCAAAG--------GAG---------CCTCTAC.....................	18	12	1.00	12	0	0	12	0
..........................................................................................................................................................................................................................................................TCAAAG--------GAG---------CCTCTACCAGCAGCAG............	25	20	0.95	19	0	0	19	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCAGCAG............	24	20	0.90	18	0	0	18	0
......................................................................................................................................................................................................................................................AAATTCAAAG--------GAG---------CCTCTACCAG..................	23	12	0.75	9	0	0	9	0
........................................................................................................................................................................................................................................................ATTCAAAG--------GAG---------CCTCTACCAGC.................	22	12	0.75	9	0	0	9	0
........................................................................................................................................................................................................................................................ATTCAAAG--------GAG---------CCTCTACC....................	19	12	0.75	9	0	0	9	0
..............................................................................................................................................................................................................................................................AG--------GAG---------CCTCTACCAGCAGCAG............	21	20	0.75	15	0	0	15	0
........................................................................................................................................................................................................................................................ATTCAAAG--------GAG---------CCTCTACCAGCAGCAG............	27	12	0.67	8	0	0	8	0
....................................................................................................................................................................................................................................................................................CCTCTACCAGCAGCAGAAGCAG......	22	20	0.65	13	0	0	13	0
......................................................................................................................................................................................................................................................AAATTCAAAG--------GAG---------CCTCTACCAGCAG...............	26	12	0.58	7	0	0	7	0
......................................................................................................................................................................................................................................................AAATTCAAAG--------GAG---------CCTCTAC.....................	20	12	0.58	7	0	0	7	0
....................................................................................................................................................................................................................................................TCAAATTCAAAG--------GAG---------CCTCTAC.....................	22	12	0.58	7	0	0	7	0
..............................................................................................................................................................................................................................................................AG--------GAG---------CCTCTACCAGCAGCAGAAGCAG......	27	20	0.55	11	0	0	11	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGC.................	19	20	0.50	10	0	0	9	1
.......................................................................................................................................................................................................................................................................................CTACCAGCAGCAGAAGCAG......	19	20	0.50	10	0	0	10	0
.........................................................................................................................................................................................................................................................TTCAAAG--------GAG---------CCTCTACCA...................	19	12	0.50	6	0	0	6	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCAGCAGAAG.........	27	20	0.40	8	0	0	8	0
............................................................................................................................................................................................................................................................AAAG--------GAG---------CCTCTACCAGCAGC..............	21	20	0.40	8	2	0	4	2
....AGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAA........................................................	18	13	0.38	5	0	0	5	0
.....................................................................................................................................................................................................................................................................................CTCTACCAGCAGCAGAAG.........	18	20	0.35	7	0	0	7	0
.....................................................................................................................................................................................................................................................CAAATTCAAAG--------GAG---------CCTCTACCA...................	23	12	0.33	4	0	0	4	0
...................................................................................................................................................................................................................................................GTCAAATTCAAAG--------GAG---------CCTCTACCAG..................	26	12	0.33	4	0	0	4	0
.....................................................................................................................................................................................................................................................CAAATTCAAAG--------GAG---------CCTCTACC....................	22	12	0.33	4	0	0	4	0
.........................................................................................................................................................................................................................................................TTCAAAG--------GAG---------CCTCTACCAGCAG...............	23	12	0.33	4	0	0	4	0
........................................................................................................................................................................................................................................................ATTCAAAG--------GAG---------CCTCTACCAGCA................	23	12	0.33	4	0	0	4	0
...........AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------G.......................................	22	13	0.31	4	0	0	4	0
.........................................................................................................................................................................................................................................................................AG---------CCTCTACCAGCAGCAGA...........	19	20	0.30	6	0	0	6	0
........................................................................................................................................................................................................................................................................................TACCAGCAGCAGAAGCAG......	18	20	0.30	6	0	0	6	0
..............................................................................................................................................................................................................................................................AG--------GAG---------CCTCTACCAGCAGCAGAAG.........	24	20	0.30	6	0	0	6	0
....................................................................................................................................................................................................................................................TCAAATTCAAAG--------GAG---------CCTCTACC....................	23	12	0.25	3	0	0	3	0
........................................................................................................................................................................................................................................................ATTCAAAG--------GAG---------CCTCTACCA...................	20	12	0.25	3	0	0	3	0
..........................................................................................................................................................................................................................................................TCAAAG--------GAG---------CCTCTACCAGCA................	21	20	0.25	5	0	0	5	0
.........................................................................................................................................................................................................................................................................AG---------CCTCTACCAGCAGCAGAAGCAGC-A...	26	20	0.25	5	0	0	5	0
.......................................................................................................................................................................................................................................................AATTCAAAG--------GAG---------CCTCTAC.....................	19	12	0.25	3	0	0	3	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCA................	20	20	0.25	5	0	0	5	0
..........GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------GAG---------C...........................	26	12	0.25	3	0	0	3	0
.............................................................................................................................................................................................................................................................AAG--------GAG---------CCTCTACCAGCAG...............	19	20	0.25	5	0	0	5	0
...........................................................................................................................................................................................................................................................................................CAGCAGCAGAAGCAGC-AAC.	19	20	0.25	5	0	0	5	0
....AGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAA.................................................	25	13	0.23	3	0	0	3	0
.TAAAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGT...........................................................	18	13	0.23	3	0	0	3	0
...AAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAA........................................................	19	13	0.23	3	0	0	3	0
..........................................................................................................................................................................................................................................................TCAAAG--------GAG---------CCTCTACCA...................	18	20	0.20	4	0	0	4	0
.........................................................................................................................................................................................................................................................................AG---------CCTCTACCAGCAGCAGAAGCAGC-AA..	27	20	0.20	4	0	0	4	0
....................................................................................................................................................................................................................................................TCAAATTCAAAG--------GAG---------CCTCTACCAGCAG...............	28	12	0.17	2	0	0	2	0
..................................................................................................................................................................................................................................................AGTCAAATTCAAAG--------GAG---------CCTC........................	21	12	0.17	2	0	0	2	0
.......................................................................................................................................................................................................................................................AATTCAAAG--------GAG---------CCTCTACCAGC.................	23	12	0.17	2	0	0	2	0
.........................................................................................................................................................................................................................................................TTCAAAG--------GAG---------CCTCTACCAGC.................	21	12	0.17	2	0	0	2	0
.....................................................................................................................................................................................................................................................CAAATTCAAAG--------GAG---------CCTC........................	18	12	0.17	2	0	0	2	0
......................................................................................................................................................................................................................................................AAATTCAAAG--------GAG---------CCTCTACC....................	21	12	0.17	2	1	0	1	0
......................................................................................................................................................................................................................................................AAATTCAAAG--------GAG---------CCTCTACCA...................	22	12	0.17	2	0	0	2	0
......................................................................................................................................................................................................................................................AAATTCAAAG--------GAG---------CCTCTACCAGC.................	24	12	0.17	2	0	0	2	0
.........................................................................................................................................................................................................................................................TTCAAAG--------GAG---------CCTCTACCAGCA................	22	12	0.17	2	0	0	2	0
.......................................................................................................................................................................................................................................................AATTCAAAG--------GAG---------CCTCTACCAGCA................	24	12	0.17	2	0	0	2	0
.........................................................................................................................................................................................................................................................TTCAAAG--------GAG---------CCTCTACC....................	18	12	0.17	2	0	0	2	0
.......................................................................................................................................................................................................................................................AATTCAAAG--------GAG---------CCTCTACC....................	20	12	0.17	2	0	0	2	0
....AGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAA.......................................................	19	13	0.15	2	0	0	2	0
...........AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCA...................................................	18	13	0.15	2	0	0	2	0
......AA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAAT......................................................	18	13	0.15	2	0	0	2	0
.........................................................................................................................................................................................................................................................................................ACCAGCAGCAGAAGCAGC-A...	19	20	0.15	3	0	0	3	0
.............................................................................................................................................................................................................................................................AAG--------GAG---------CCTCTACCAGCA................	18	20	0.15	3	0	0	3	0
............................................................................................................................................................................................................................................................AAAG--------GAG---------CCTCTACCAGC.................	18	20	0.15	3	0	0	3	0
............................................................................................................................................................................................................................................................AAAG--------GAG---------CCTCTACCAGCAG...............	20	20	0.15	3	0	0	3	0
..............................................................................................................................................................................................................................................................AG--------GAG---------CCTCTACCAGCAGC..............	19	20	0.15	3	0	0	3	0
.....................................................................................................................................................................................................................................................................................CTCTACCAGCAGCAGAAGCAG......	21	20	0.15	3	1	0	0	2
...............................................................................................................................................................................................................................................................G--------GAG---------CCTCTACCAGCAGC..............	18	20	0.15	3	0	0	3	0
.......................................................................................................................................................................................................................................................................................CTACCAGCAGCAGAAGCAGC-A...	21	20	0.10	2	0	0	2	0
..........................................................................................................................................................................................................................................................TCAAAG--------GAG---------CCTCTACCAGC.................	20	20	0.10	2	0	0	2	0
..........................................................................................................................................................................................................................................................TCAAAG--------GAG---------CCTCTACCAGCAGCA.............	24	20	0.10	2	0	0	2	0
..............................................................................................................................................................................................................................................................AG--------GAG---------CCTCTACCAGCAGCA.............	20	20	0.10	2	0	0	2	0
.........................................................................................................................................................................................................................................................................................ACCAGCAGCAGAAGCAGC-....	18	20	0.10	2	0	0	2	0
.............................................................................................................................................................................................................................................................AAG--------GAG---------CCTCTACCAGCAGCAGAAGC........	26	20	0.10	2	0	0	2	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCAGT..............	22	20	0.10	2	0	1	1	0
........................................................................................................................................................................................................................................................................GAG---------CCTCTACCAGCAGCAGAAGCAGC-A...	27	20	0.10	2	0	0	2	0
.......................................................................................................................................................................................................................................................................................CTACCAGCAGCAGAAGCA.......	18	20	0.10	2	0	0	2	0
.......................................................................................................................................................................................................................................................AATTCAAAG--------GAG---------CCTCTACCA...................	21	12	0.08	1	0	0	1	0
....................................................................................................................................................................................................................................................TCAAATTCAAAG--------GAG---------CCT.........................	18	12	0.08	1	0	0	1	0
.....................................................................................................................................................................................................................................................CAAATTCAAAG--------GAG---------CCTCTACCAGC.................	25	12	0.08	1	0	0	1	0
...............................................................................................................................................................................................................................................GGAAGTCAAATTCAAAG--------GAG---------CCTCT.......................	25	12	0.08	1	0	0	1	0
.................................................................................................................................................................................................................................................AAGTCAAATTCAAAG--------GAG---------C...........................	19	12	0.08	1	0	0	1	0
......................................................................................................................................................................................................................................................AAATTCAAAG--------GAG---------CCTCTA......................	19	12	0.08	1	0	0	1	0
.....................................................................................................................................................................................................................................................CAAATTCAAAG--------GAG---------CCTCTAC.....................	21	12	0.08	1	0	0	1	0
..............................................................................................................................................................................................................................................AGGAAGTCAAATTCAAAG--------GAG---------CCT.........................	24	12	0.08	1	0	0	1	0
.....................................................................................................................................................................................................................................................CAAATTCAAAG--------GAG---------CCTCTACCAGCAG...............	27	12	0.08	1	0	0	1	0
.....................................................................................................................................................................................................................................................CAAATTCAAAG--------GAG---------CCTCTACCAGCA................	26	12	0.08	1	0	0	1	0
......................................................................................................................................................................................................................................................AAATTCAAAG--------GAG---------CCTCTACCAGCAGC..............	27	12	0.08	1	0	0	1	0
.................................................................................................................................................................................................................................................AAGTCAAATTCAAAG--------GAG---------CCT.........................	21	12	0.08	1	0	0	1	0
...................................................................................................................................................................................................................................................GTCAAATTCAAAG--------GAG---------CCTCTACC....................	24	12	0.08	1	0	0	1	0
.........................................................................................................................................................................................................................................................TTCAAAG--------GAG---------CCTCTACCAGCAGCA.............	25	12	0.08	1	0	0	1	0
...................................................................................................................................................................................................................................................GTCAAATTCAAAG--------GAG---------CCTCTAC.....................	23	12	0.08	1	0	0	1	0
.....................................................................................................................................................................................................................................................CAAATTCAAAG--------GAG---------CCTCTACCAG..................	24	12	0.08	1	0	0	1	0
....................................................................................................................................................................................................................................................TCAAATTCAAAG--------GAG---------CCTCTACCA...................	24	12	0.08	1	0	0	1	0
.......................................................................................................................................................................................................................................................AATTCAAAG--------GAG---------CCTCTACCAG..................	22	12	0.08	1	0	0	1	0
..................................................................................................................................................................................................................................................AGTCAAATTCAAAG--------GAG---------CCTCTACCA...................	26	12	0.08	1	0	0	1	0
....................................................................................................................................................................................................................................................TCAAATTCAAAG--------GAG---------CCTCTA......................	21	12	0.08	1	0	0	1	0
..................................................................................................................................................................................................................................................AGTCAAATTCAAAG--------GAG---------CCTCTACC....................	25	12	0.08	1	0	0	1	0
.......A--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------GAG---------C...........................	27	12	0.08	1	0	0	1	0
...........AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------GAG---------CC..........................	26	12	0.08	1	0	0	1	0
.........................................................................................................................................................................................................................................................TTCAAAG--------GAG---------CCTCTACCAGCAGC..............	24	12	0.08	1	0	0	1	0
........................................................................................................................................................................................................................................................ATTCAAAG--------GAG---------CCTCTACCAGCAGCA.............	26	12	0.08	1	0	0	1	0
....................................................................................................................................................................................................................................................TCAAATTCAAAG--------GAG---------CCTCTACCAGCA................	27	12	0.08	1	0	0	1	0
.....................................................................................................................................................................................................................................................CAAATTCAAAG--------GAG---------CCTCT.......................	19	12	0.08	1	0	0	1	0
...................................................................................................................................................................................................................................................GTCAAATTCAAAG--------GAG---------CCT.........................	19	12	0.08	1	0	0	1	0
..............................................................................................................................................................................................................................................AGGAAGTCAAATTCAAAG--------GAG---------C...........................	22	12	0.08	1	0	0	1	0
..................................................................................................................................................................................................................................................AGTCAAATTCAAAG--------GAG---------CCTCTACCAG..................	27	12	0.08	1	0	0	1	0
..............................................................................................................................................................................................................................................AGGAAGTCAAATTCAAAG--------GAG---------CCTC........................	25	12	0.08	1	0	0	1	0
...AAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAA.......................................................	20	13	0.08	1	0	0	1	0
...........AG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAA.................................................	20	13	0.08	1	0	0	1	0
TTAAAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTC..........................................................	20	13	0.08	1	0	0	0	1
.TAAAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAAT......................................................	23	13	0.08	1	0	0	1	0
.TAAAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTC..........................................................	19	13	0.08	1	0	0	1	0
TTAAAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAG............................................................	18	13	0.08	1	0	0	1	0
......AA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATT.....................................................	19	13	0.08	1	0	0	1	0
.......A--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATT.....................................................	18	13	0.08	1	0	0	1	0
.....GAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATT.....................................................	20	13	0.08	1	0	0	1	0
....AGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAAT......................................................	20	13	0.08	1	0	0	1	0
......AA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCA...................................................	21	13	0.08	1	0	0	1	0
.....GAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCA...................................................	22	13	0.08	1	0	0	1	0
.......A--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCA...................................................	20	13	0.08	1	0	0	1	0
............G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------GA......................................	22	13	0.08	1	0	0	1	0
............G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------G.......................................	21	13	0.08	1	0	0	1	0
......AA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------G.......................................	25	13	0.08	1	0	0	1	0
..........GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------G.......................................	23	13	0.08	1	0	0	1	0
..........GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAAATTCAAAG--------GA......................................	24	13	0.08	1	0	0	1	0
TTAAAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGTCAA........................................................	22	13	0.08	1	0	0	1	0
TTAAAGAA--GAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAAGT...........................................................	19	13	0.08	1	0	0	1	0
.............................................................................................................................................................................................................................................................AAG--------GAG---------CCTCTACCAGCAGCAT............	22	20	0.05	1	0	1	0	0
..............................................................................................................................................................................................................................................................AG--------GAG---------CCTCTACCAGCAGCAGA...........	22	20	0.05	1	0	0	1	0
........................................................................................................................................................................................................................................................................GAG---------CCTCTACCAGCAGCAGAAG.........	22	20	0.05	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................CTCTACCAGCAGCAGAAGCAGC-....	22	20	0.05	1	0	1	0	0
.........................................................................................................................................................................................................................................................................AG---------CCTCTACCAGCAGCAGAAG.........	21	20	0.05	1	0	0	1	0
....................................................................................................................................................................................................................................................................................CCTCTACCAGCAGCAGAAGA........	20	20	0.05	1	0	0	1	0
.............................................................................................................................................................................................................................................................AAG--------GAG---------CCTCTACCAGCAGCAGAA..........	24	20	0.05	1	0	0	1	0
..........................................................................................................................................................................................................................................................TCAAAG--------GAG---------CCTCTACCAGCAGCAGA...........	26	20	0.05	1	0	0	1	0
........................................................................................................................................................................................................................................................................GAG---------CCTCTACCAGCAGCAGAAGCAG......	25	20	0.05	1	0	0	1	0
..............................................................................................................................................................................................................................................................AG--------GAG---------CCTCTACCAGCAGT..............	19	20	0.05	1	0	0	1	0
.........................................................................................................................................................................................................................................................................................ACCAGCAGCAGAAGCAGC-AAC.	21	20	0.05	1	0	0	1	0
........................................................................................................................................................................................................................................................................GAG---------CCTCTACCAGCAGCAGT...........	20	20	0.05	1	0	0	1	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCT................	20	20	0.05	1	0	0	1	0
......................................................................................................................................................................................................................................................................................TCTACCAGCAGCAGAAGCAGC-....	21	20	0.05	1	0	0	0	1
.............................................................................................................................................................................................................................................................AAG--------GAG---------CCTCTACCAGCAGCAGA...........	23	20	0.05	1	0	1	0	0
.............................................................................................................................................................................................................................................................AAG--------GAG---------CCTCTACCAGCAGCAGAAGCA.......	27	20	0.05	1	0	0	1	0
....................................................................................................................................................................................................................................................................................CCTCTACCAGCAGCAGAAGCAGC-AACA	27	20	0.05	1	0	0	1	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCAGCAGAA..........	26	20	0.05	1	0	0	1	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCAGCAGA...........	25	20	0.05	1	0	0	1	0
............................................................................................................................................................................................................................................................AAAG--------GAG---------CCTCTACCAGCAGCAG............	23	20	0.05	1	0	0	1	0
.....................................................................................................................................................................................................................................................................................CTCTACCAGCAGCAGAAGCAGC-AA..	24	20	0.05	1	0	0	1	0
..............................................................................................................................................................................................................................................................AG--------GAG---------CCTCTACCAGCAGCAGAA..........	23	20	0.05	1	0	1	0	0
..........................................................................................................................................................................................................................................................TCAAAG--------GAG---------CCTCTACCAGCAGCAGT...........	26	20	0.05	1	0	0	1	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCAGC..............	22	20	0.05	1	0	0	1	0
............................................................................................................................................................................................................................................................AAAG--------GAG---------CCTCTACCAGCA................	19	20	0.05	1	0	0	1	0
.........................................................................................................................................................................................................................................................................AG---------CCTCTACCAGCAGCAGAAGCA.......	23	20	0.05	1	0	0	1	0
.........................................................................................................................................................................................................................................................................AG---------CCTCTACCAGCAGCAGAAGCAGC-AAC.	28	20	0.05	1	0	0	1	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCAGCAGAAGC........	28	20	0.05	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................CTACCAGCAGCAGAAGCAGC-AACA	24	20	0.05	1	0	0	1	0
....................................................................................................................................................................................................................................................................................CCTCTACCAGCAGCAGAAGC........	20	20	0.05	1	0	0	1	0
.............................................................................................................................................................................................................................................................AAG--------GAG---------CCTCTACCAGCAGCAA............	22	20	0.05	1	0	0	1	0
........................................................................................................................................................................................................................................................................GAG---------CCTCTACCAGCAGCAGAAGC........	23	20	0.05	1	0	0	1	0
............................................................................................................................................................................................................................................................AAAG--------GAG---------CCTCTACCAGCAGCAGAA..........	25	20	0.05	1	0	0	1	0
...........................................................................................................................................................................................................................................................CAAAG--------GAG---------CCTCTACCAGCAT...............	21	20	0.05	1	0	0	1	0

droYak3

TACTAA----------------------------------------------------------------------------------------------------------------------------------------TTTTCAAATT-------------------C-----------------------TTGTATTTAGATGCCGCCAA---TGG--------GAACA--CG---------ACC---ACG--------AAT-------------CCTCAACAGCAGTCGAATC-A-AC

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

CGCGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA-AATTCAGA------------------------------------------------TCACGTTAACC--CATTGGCGC-GCCT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dvi_21390

scaffold_13052:1057740-1057805 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads