ID:

dvi_2123

 Coordinate:

scaffold_12758:30862-31012 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.9 -8.9

Flybase annnotation

CDS [Dvir\GJ15496-cds]; exon [dvir_GLEANR_15919:2]; intron [Dvir\GJ15496-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GACAACCTGCAAGAGGATGGATACCACTACCAGCAGCCAGCCAAGCAGTTCGTCATTGACGTGCCACAAACCTATGAGCAGCCAGCTCCCGTAGTCTATGAGAAGCCAGCTCCAGTTGTCTACCAGAAGCCCGCTCCCGTTGTCTACGAGAAGCCTGCTCCCGTTGTCTACGAGAAGCCTGCTCCCGTTGTCTACGAGAAGCCCGCTCCAGTAGTCTATGAGAAGCCCGCTCCTGTTGTCTACGAGAAGCC
*****************************************************************.....................((..((((.....(((.......))).......))))..)).*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M061
embryo
 V047
embryo
 SRR1106713
embryo_0-2h
 SRR060687
9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 M047
female body
 V053
head
 V116
male body		 SRR060666
160_males_carcasses_total
............................................................................................................................................................................................TGTCTACGAGAAGCCCGCTCCA......................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0
..........................................AAGCAGTTCGTCATTGACGT............................................................................................................................................................................................. 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.............................................................................................................CTCCAGTTGTCTACCAGAA........................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................ACAAACCTATGAGCAGCCAGCTCC.................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTCTATGAGAAGCCCGCTCCTGTTGT............ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..CAACCTGCAAGAGGATGGATACCAC................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................GTTGTCTACCAGAAGCCCGCTCC.................................................................................................................. 23 0 2 1.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................TCCAGTTGTCTACCAGAAGCCCGCTC................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................CGTCATTGACGTGCCACAAACCTATGAGC............................................................................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................CATTGACGTGCCACAAACCTATGAGC............................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................AAGCCAGCTCCCGTAGTCTATGAGAAGCCA............................................................................................................................................... 30 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................................................AGCTCCCGTAGTCTATGAGAAGCCAGCT............................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................CAAACCTATGAGCAGCCAGCTCCCGT............................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................CACAAACATATGAGCAGCCAGCTCCC................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................AGCCAGCTCCCGTAGTCTATGATA.................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................CCCGTTGTCTACGAGAAGCCTG.............................................................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................CCCGTTGTCTACGAGAAGCCTG...................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TGTCTACCAGAAGCCCGCTCCC................................................................................................................. 22 0 2 0.50 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................CTACGAGAAGCCTGCTCCCGTT.............................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................CTGCTCCCGTTGTCTACGAGA............................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GTCTACGAGAAGCCTGCTCCC................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................GTCTACGAGAAGCCTGCTCCC......................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................TTGTCTACGAGAAGCCTGCTCCCGTTGT............................................................ 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................TTGTCTACGAGAAGCCTGCTCCCGTTGT.................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGTCTACGAGAAGCCTGC..................................................................... 18 0 2 0.50 1 0 1 0 0 0 0 0 0 0
................................................................................................................CGGTTGTCTACCAGAAGCCCG...................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................CTACGAGAAGCCTGCTCCCGTT...................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................TGTCTACGAGAAGCCTGC............................................................................................. 18 0 2 0.50 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................CTGCTCCCGTTGTCTACGAGA.................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TGTCTACAAGGAGCCCGCA.................................................................................................................... 19 3 11 0.18 2 0 0 0 0 1 1 0 0 0
............................................................................................................................................................................................TGTCTACAAGGAGCCCGCA............................................ 19 3 11 0.18 2 0 0 0 0 1 1 0 0 0
.....................................................................................................................GTCTTCCAGAACCCCTCTC................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 1 0 0
............................................................................................................................TGAAGCCCGGTACCGTTGT............................................................................................................ 19 3 11 0.09 1 0 0 0 0 0 0 0 1 0
...................................................................................................GAAAAGCCAGCTCCAGTC...................................................................................................................................... 18 2 14 0.07 1 0 0 0 0 1 0 0 0 0
.........................................CAAGCCTTTCGTCATGGAC............................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTGTTGGACGTTCTCCTACCTATGGTGATGGTCGTCGGTCGGTTCGTCAAGCAGTAACTGCACGGTGTTTGGATACTCGTCGGTCGAGGGCATCAGATACTCTTCGGTCGAGGTCAACAGATGGTCTTCGGGCGAGGGCAACAGATGCTCTTCGGACGAGGGCAACAGATGCTCTTCGGACGAGGGCAACAGATGCTCTTCGGGCGAGGTCATCAGATACTCTTCGGGCGAGGACAACAGATGCTCTTCGG
***************************************************************************************************************************.....................((..((((.....(((.......))).......))))..)).***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060661
160x9_0-2h_embryos_total
 V053
head
 SRR060666
160_males_carcasses_total
...................................................................................................................................................CTCTTCGGACGCAGGCAA...................................................................................... 18 2 4 0.25 1 1 0 0 0
...........................................................................................................................................................................CTCTTCGGACGCAGGCAA.............................................................. 18 2 4 0.25 1 1 0 0 0
...............................................................................................................................TCGGGCGAGGGCGACAGAGGT....................................................................................................... 21 3 5 0.20 1 0 0 1 0
.....................................................................................................CTTCGGTGGAGGTCAATA.................................................................................................................................... 18 2 5 0.20 1 0 1 0 0
......................................................................................................................................................TTGGGACGAGGGCAAGGGAT................................................................................. 20 3 16 0.06 1 0 0 0 1
..............................................................................................................................................................................TTGGGACGAGGGCAAGGGAT......................................................... 20 3 16 0.06 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12758:30812-31062 - dvi_2123 GACAACCTGCAAGAGGATGGATACCACTACCAGCAGCCAGC---C---------------------------------AAGCAGTT---CGTCATTGACGTGCCA---C---------AAAC-----CTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCCAGCTCCC---------------------GTAGTCTATGAGAAGCC------AGCTCCAGTTGTCTACCAGAAGCCCGCTCCCGTTGTCTACGAGAAGCCTGCTCCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCTACGAGAAGCCTGCTCCCGTTGTCTACGAGA----------------------------------------------------------------------AGCCCGCTCCAGTAGTCTATGAG------AAGCCCGCTCCT---------------------------------------------------------------------------------------------GTTGTCTAC------GAGAA----------------------GCC
droMoj3 scaffold_6680:1155232-1155479 - GATAATCGGCAAGCGGATGGTTACCACTATCAGCAACCAAG---T---------------------------------CAGCCATT---CGTCATCGATGTGCCCCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCATCAAACAAAAGGAGGTGGTCTACGAACAGCA------ACCTCAGGTAGTCTACCAAAAGCAAAACCAGGTGATCTACGAGCAGCCCGCTCCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCGTCCAACAGCAAAATAAGGTGGTTTACGAGC----------------------------------------------------------------------AGCCCGCTCCAGTGTTCGTCCAA------AACCAA------AATAA---------------------------------------------------------------------------------------GGTGGTTTAC------GAACA----------------------GCA
droGri2 scaffold_15110:1327858-1328072 + GATAACCTGCAGGATGATGGATATCATTATCAGCAGCCTGC---C---------------------------------AAGCAGTT---C------GAAGTGCAG---C---------AATA-----CCATGAGTCTGCACCAGCTCCAGT---CTACCACGCACCCGCTCCCGTAGTTCATCATG------CACCCGCTCCAGTTTACCAC------------------GCACCT------GCTCCA-----------------------------------------------------------------------------GTG----GT------------------------------------------------------------------------------------------------------------------------------CCATCATGCACCCGCTCCAGTTTACCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACCTGCTCCA---------------------------------------------------------------------------------------GTGGTTCAT------CATGC----------------------ACC
droWil2 scf2_1100000004511:10831929-10832223 - ACTT----GCC---------------------------------CCCCGTGGTGCAGGAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATTGTCGTTTCTCCCAGCAATGAGTACTTACCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTAGATA------CTCAGCCAGCCCATGAGCTTGCCGATGATGGTTACCGTTACAAGACCCACAAGCGTGTGGTGCTCCGTCGTCACCGTCGTGATGTGAGCCACTTGCCTTCCAACGAATACCTACCCCCTGTTCAAGCTGCTCCATCCAACGAGTACTTGCCCCCAGTCCAGGTA-GCTGCTCCAGCTCCTATCCAA------GTTGCTGCCCCCATTCC------------------------------------------------------------------------------------------TGTCCAAGTTGAGAATGA----------------------GCC
dp5 XL_group1e:6170202-6170481 - GAGTACCTGCC---------------------------------ACCTG---TCCAGAACTCATACGCGGCTCCATCGGTGAGCTACTCCGCACC-----------GG-CCATCCAGCAGACGTACT--------------------------------------------------------------------CGGCCCCAGCCATCCAGCAGCAGACGTACTCC---------GCACCGGC---C-------------ATCCAGCAGACGTACTCGGCC-------------------CCAGCCATCCAGCA-------------------GCAGACCTATGCCGCCCCCAGCAACGAGTATCTGCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGACCTACTCCGCTCCAGCTGTCCAGAGGACCTA-----------------------------------CTCGGCTCCATCCGTGAGCTACTCGGCCCCGTCCGTGAG--------------------CT----------------------ACT
droPer2 scaffold_4:120451-120659 + GGCTA------------------CGACTACGCTCCCCCGGCGCCA---GTGGC-------T--------------CC---------------------CGTGCA--GG-TC-----------------TACCAGCCA------------------------GCACCTGCCCCGGTTTACCAGCCAGCTCCCGCTCCCGCTCCAGTCTACCAGC------C---------AGCTCCAGCTCCTGCTCCA-----------------------------------------------------------------------------GTT----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCAGCTCCAGCTCCGGTCTACCAGCCAGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCACCCATCCGC------ATCCCAGCTCCCGCCCCA------------------------------------------------------------------------------------------GTGC---------AGAG----------------------CTA
droAna3 scaffold_13337:2544329-2544518 - AACAACCTGCAGGAGGATGGCTACCACTACGGCCCTCCCCG---T---------------------------------ACTCCCCT---CGTGATCGACGTGCCG---G---------TGCC-----CCATGAGTCGGCCCCTCCTCCAGTGGTCTA---------------------TGTGCCCC------CC---------------AAAA------C---------GACTCCT------CGTCCGGTCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTCCACCCCCACCACCACCACCACCACCAACT--------------------------------------------------------------------------------------------------AAGC---------------------------------------------------------------------------------------------------GTGTGGTCTA----------CA----------------------CCC
droBip1 scf7180000396740:378796-378966 + GCCC--GTGCC---------------------------------CGTTG---TCCATGAGCA----------------------------GCACC-----------AGGTGATCCAGCAGACCTACT--------CC------------------------GCTCCAGCTCCTGTCC------------------------------AGCAGA------CCTACTCC---------GCTCCTGCTCCT------------------------------------------------------------------------------------------------------------------------------------GTCCAGCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT---------------------------------------------------ACTCCGCTCCAGCTCCTGTCCAGCAGACCTACTCCGCTCCAGCT------------------------------------------------------------------------------------------CCTGTCCAGC---AGACCTA----------------------CTC
droKik1 scf7180000302486:443773-443945 + AACAACCTCCACGAGGATGGCTACCACTACGGAGCTCCCTC---G---------------------------------GAGCCCTTCCCTGTGATCGATCTGCCG---G---------TGCC-----CCACGAGACTGCCCCCGCACCGGT------------------GG------------------------------TCGTCTACAAGC------CCCAGCCCACTCCTCCT------CGTCCCGTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCT---C---CCCC---------------------------------------------------------------------------------------GGTGGTCTACA---AGCCACA----------------------GCC
droFic1 scf7180000454065:1111440-1111642 - GAGTACCTGCC---------------------------------TCCCG---TCCAGGAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCGTGGCCGCCCCCTCCAACGAGTACCTGCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGGCCGCCGAGCCCGAGCCCGCCCACGAGCTGGCCGATGATGGCTACCGCTACAAGACCCACCGTCGCGTGGTCCTGCGTCGCCACCGCCGCGACGTCAACGAGCTGCCCTCCAACGAGTACCTGCCCCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------------GCC
droEle1 scf7180000491249:5368002-5368207 + GAGTACCTGCC---------------------------------TCCCG---TCCAGGAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCATCGCTGGCCCCAGCAACGAGTACCTGCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGGAGGCTGAGGCCGAGCCCGCCCACGAGCTGGCTGCTGATGGATACCGCTACAAGACCCACAAGCGCGTGGTGCTCCGCCGCCACCGTCGCGATGTCAACGAGCTG---TCCAACGAGTACTTGCCCCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCC---------AGGA----------------------GGC
droRho1 scf7180000776873:17952-18207 + GGCATCCTGAAGGACGATGGCTACCACTACGCCCAGCCCTC---G---------------------------------GTGAAGTT---CG------AGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGGCTCCTCCCCCACCGAAGGTCGAGTACCTGCCTCCCCCACCCACCAAGAAGG---------------------TGTACGTTGCC---------------------------------------------------CCACCAGTGTACGTGCCTCCCCCAACCAAGAAGGTCGTCTACACCCCACCCCCAACGACCAAGAGGGCTTACGTCGCCCCCAAGGTCGAGTACCTGCCCCCCGCAGAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG------AAGG---------------------------------------------------------------------------------------------------TCGTCGTCTA----------CA----------------------CCC
droBia1 scf7180000302428:9991511-9991704 - GAGTACCTGCC---------------------------------TCCCG---TCCAGGAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCATCGCTGGCCCCAGCAACGAGTACCTGCCCC---CTGTCGCCCAGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGGCTGCCCCAGCCCATGAGCTCGCCGACGATGGCTACCGCTACAAGACCCACCGCCGTGTGGTGCTCCGTCGCCACCGTCGTGATGTCAACGAACTG---TCCAACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTA----------------------CCT
droTak1 scf7180000415941:366717-366949 + GAGTACCTGCC---------------------------------TCCCGTCGTCCAGGAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCATCGCTGGACCCTCCAACGAGTACCTTCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTTGCTGTTGAGGCTGAGCCCGCCCATGAGCTGGCCGATGATGGCTACCGCTACAAGACCCATAAGCGCGTGGTTCTCCGTCGTCACCGTCGCGATGTGAACGAGCTC---TCCAACGAGTACCTGCCCCCT-------------------------------------------------------------GTCCAG------GAGGCCGTTGCT---------------------------------------------------------------------------------------------CCCTCCAAC------GAGTA----------------------CTT
droEug1 scf7180000409672:2064867-2065117 + GGATA------------------CGACTACTCTCCCCCGGCTCCG---G---C-------T--------------CC-----------------------------GG-TC-----------------TACCAGCCT------------------------GCTCCGGCTCCTGTCTACCAGCCAG------CTCCGGCTCCGGTCTACCAGC------C---------TGCTCCTG------CTCCA-----------------------------------------------------------------------------GTTGTGATC------------------------------------------------------------------------------------------------------------------------------CCAGC----------------------------TCCTGCC----------------------------------------------------------------------------------------------------------------------------------CCAGCTCCAGTTGTGATCCCAGCCCCAGCT---------------------------------------------------------------------------------------------------CCAGTTGT------G------ATCCCAGCTCCAGCTCCCGTGAGGACCTATGTCCCACCTGCACCAATCAGCATCCCAGCTCCAG---------------------------------------CTCCGGTCTACC---ACCCAGC----------------------GCC
dm3 chrX:14069067-14069332 + GAGTACCTGCC---------------------------------CCCCG---TCCAGAGCTCGTACGCCGCTCCCTCGGTGAGCTACTCCGCACC-----------AG-CCGTGCAGCAGACCTACG--------------------------------------------------------------------CCGCTCCAGCCATCCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGTATGTCGCCCCCAGCAACGAGTACCTGCCTCCTGTGCAGACCTACTCCGCACCGGCC------------------------------------------------------------------------GTCCAGAGGA----------------CCT---------------------------------------------------ACTCCGCACCAG------------------------------CTGTCCAGAGGACCTA-----------------------------------CTCCGCCCCCTCTGTTAGCTACTCGGCACCCTCTGTGAG--------------------CTACTCGGCTCCATCGGTCAGCTACTC
droSim2 2r:13717790-13717965 - GGTTA------------------CGACTACTCTCCTCCGGCCCCA---G---C-------T--------------CC-----------------------------GG-TT-----------------TACCAGCCA------------------------GCTCCGGCTCCGGTCTACCAGCCCG------CCCCGGCTCCGGTCTACCAGC------C---------TGCTCCT------GCTCCG-----------------------------------------------------------------------------GTC----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCCGCCCCGGCTCCGGTCTACCAGCCAGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCTCCAGTTGT------G------ATCCCAGCTCCTGC-------------------------------------------------------------------------------------------------------------------------------------TCC
droSec2 scaffold_1:10563949-10564115 - GGTTA------------------CGACTACTCTCCTCCGGCCCCA---G---C-------T--------------CC-----------------------------GG-TT-----------------TACCAGCCT------------------------GCTCCAGCTCCGGTCTACCAGCCCG------CCCCGGCTCCGGTCTACCAGC------C---------TGCTCCAG------CACCA-----------------------------------------------------------------------------GTTGTTATC------------------------------------------------------------------------------------------------------------------------------CCTGC----------------------------TCCTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCTCCAGTTGT------G------ATCCCAGCTCCAGCTCCCG------------------------------------------------------------------------------------------------------TGAA----------------------GTC
droYak3 3L:5037137-5037470 - AACAACCTGCAGGAGGATGGATACCACTATGCCCCACCACG---C---------------------------------GCCCCGGT---CGTCATCGATGTGCCCTACG---------TGCC-----CCACGAGTCTGCCCCACCAGTAGTGGTCTA---------------------CGAGGCCC------CC---------------AAGC------CCAGGCCCACACCCCCT------CGCCCCGTCTACACCCCTCAGCCCGCTGGTGTTCTCAAGGACGATGGCTACCACTACGCCCAGCCTTCCGTGAAATTCGAGGT---------TGCTGCTCCTCCACCACCAAAGGTCGAGTACCTGCCTC---CTCCCACCAAGAAGG---------------------TGGTGATCGCC------------------------------------------------CCACCCCCAGTGTACGTGCCTCCCCCAACCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------AAGG---------------------------------------------------------------------------------------------------TCGTCGTCTA----------CA----------------------CCC
droEre2 scaffold_4845:12795067-12795293 + GGTTA------------------CGACTACTCTCCTCCGGCCCCG---G---C-------T--------------CC-----------------------------GG-TC-----------------TACCAGCCT------------------------GCTCCGGCTCCGGTCTACCAGCCTG------CTCCGGCTCCGGTCTACCAGC------C---------TGCTCCAG------CTCCG-----------------------------------------------------------------------------GTC----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCTGCTCCAGCTCCCGTCTACCAGCCTGCTCCGGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATTCCAGTCTC------G------ATCCCAGCTCCAGCTCCCGTGAGGGCCTATGTCCCACCCGCACCCATCA------------------------------------------------------------GCATC------CCGGC----------------------TCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GACAACCTGCAAGAGGATGGATACCACTACCAGCAGCCAGC---C---------------------------------AAGCAGTT---CGTCATTGACGTGCCA---C---------AAAC-----CTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCCAGCTCCC---------------------GTAGTCTATGAGAAGCC------AGCTCCAGTTGTCTACCAGAAGCCCGCTCCCGTTGTCTACGAGAAGCCTGCTCCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCTACGAGAAGCCTGCTCCCGTTGTCTACGAGA----------------------------------------------------------------------AGCCCGCTCCAGTAGTCTATGAG------AAGCCCGCTCCT---------------------------------------------------------------------------------------------GTTGTCTAC------GAGAA----------------------GCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTACGAGA----------------------------------------------------------------------AGCCCGCTCCA........................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000002000
..............................................................................AAGCAGTT---CGTCATTGACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000002000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGTTGTCTACCAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................A---C---------AAAC-----CTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCCAGCTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATGAG------AAGCCCGCTCCT---------------------------------------------------------------------------------------------GTTGT........................................2611.001000100000000000000000000000000000000000000000000000000000000000
..CAACCTGCAAGAGGATGGATACCAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTACCAGAAGCCCGCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2321.002000200000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGTTGTCTACCAGAAGCCCGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................CGTCATTGACGTGCCA---C---------AAAC-----CTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................CATTGACGTGCCA---C---------AAAC-----CTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGCTCCC---------------------GTAGTCTATGAGAAGCC------AGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................C---------AAAC-----CTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCCAGCTCCC---------------------GT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGTTGTCTACGAGAAGCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCTACGAGAAGCCTG...........................................................................................................................................................................................................................................................................2220.501000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTACCAGAAGCCCGCTCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAGAAGCCTGCTCCCGTT...................................................................................................................................................................................................................................................................2220.501000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGTCTACGAGA.................................................................................................................................................................................................................................................................................2120.501000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACGAGAAGCCTGCTCCC......................................................................................................................................................................................................................................................................2120.501000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACGAGAAGCCTGCTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.501000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTACGAGAAGCCTGCTCCCGTTGT.................................................................................................................................................................................................................................................................2820.501000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCTACGAGAAGCCTGCTCCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGT.........................................................................................................................................................................................................................................................................................2820.501000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTACGAGAAGCCTGC..........................................................................................................................................................................................................................................................................1820.501000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAGAAGCCTGCTCCCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT...........................................................................................................................................................................................................................................................................................2220.501000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTACGAGAAGCCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCCCGTTGTCTACGAGA----------------------------------------------------------------------...................................................................................................................................................................................2120.501000100000000000000000000000000000000000000000000000000000000000
droMoj3
GATAATCGGCAAGCGGATGGTTACCACTATCAGCAACCAAG---T---------------------------------CAGCCATT---CGTCATCGATGTGCCCCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCATCAAACAAAAGGAGGTGGTCTACGAACAGCA------ACCTCAGGTAGTCTACCAAAAGCAAAACCAGGTGATCTACGAGCAGCCCGCTCCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCGTCCAACAGCAAAATAAGGTGGTTTACGAGC----------------------------------------------------------------------AGCCCGCTCCAGTGTTCGTCCAA------AACCAA------AATAA---------------------------------------------------------------------------------------GGTGGTTTAC------GAACA----------------------GCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCCGCTCCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTC........................................................................................................................................................................................................................................................................................1911.001000010
droGri2
GATAACCTGCAGGATGATGGATATCATTATCAGCAGCCTGC---C---------------------------------AAGCAGTT---C------GAAGTGCAG---C---------AATA-----CCATGAGTCTGCACCAGCTCCAGT---CTACCACGCACCCGCTCCCGTAGTTCATCATG------CACCCGCTCCAGTTTACCAC------------------GCACCT------GCTCCA-----------------------------------------------------------------------------GTG----GT------------------------------------------------------------------------------------------------------------------------------CCATCATGCACCCGCTCCAGTTTACCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACCTGCTCCA---------------------------------------------------------------------------------------GTGGTTCAT------CATGC----------------------ACCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ACTT----GCC---------------------------------CCCCGTGGTGCAGGAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATTGTCGTTTCTCCCAGCAATGAGTACTTACCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTAGATA------CTCAGCCAGCCCATGAGCTTGCCGATGATGGTTACCGTTACAAGACCCACAAGCGTGTGGTGCTCCGTCGTCACCGTCGTGATGTGAGCCACTTGCCTTCCAACGAATACCTACCCCCTGTTCAAGCTGCTCCATCCAACGAGTACTTGCCCCCAGTCCAGGTA-GCTGCTCCAGCTCCTATCCAA------GTTGCTGCCCCCATTCC------------------------------------------------------------------------------------------TGTCCAAGTTGAGAATGA----------------------GCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCGTCGTGATGTGAGC.............................................................................................................................................................................................................................................................2012.00200020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTGTGGTGCTCCGTCGTCACC...........................................................................................................................................................................................................................................................................2511.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGCCCCCAGTCCAGGT...................................................................................................................................................................................1911.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCTCCATCCAACGA........................................................................................................................................................................................................1911.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACCGTCGTGATGTGA...............................................................................................................................................................................................................................................................1811.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCAGGTA-GCTGCTCCAG.......................................................................................................................................................................2011.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTCAAGCTGCTCCATCCAAC..........................................................................................................................................................................................................2311.00100010
.............................................CCCGTGGTGCAGGAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATCCAA------GTTGCTGCCCC...........................................................................................................................................2111.00100010
.................................................................................................................................................................................................................................................................................................................................................GATTGTCGTTTCTCCCAGCAATGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGGTA-GCTGCTCCAG.......................................................................................................................................................................1911.00100010
.................................................................................................................................................................................................................................................................................................................................................GATTGTCGTTTCTCCCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------CTCAGCCAGCCCATGAGCT...................................................................................................................................................................................................................................................................................................................................2011.00100010
...........................................................GTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATTGTCGTTTCTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..........................................................AGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATTGTCGTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................................................................................................................................................................................................................................................................................................................................CAGATTGTCGTTTCTCCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGACCCACAAGCGTGT............................................................................................................................................................................................................................................................................................2070.57400040
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACCCACAAGCGTGTG...........................................................................................................................................................................................................................................................................................1970.57400040
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTGCCGATGATGGTT.....................................................................................................................................................................................................................................................................................................................2120.50100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATGAGCTTGCCGATGATG........................................................................................................................................................................................................................................................................................................................2220.50100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCATGAGCTTGCCGATGAT.........................................................................................................................................................................................................................................................................................................................2220.50100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCATGAGCTTGCCGATGATGGTT.....................................................................................................................................................................................................................................................................................................................2620.50100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCATGAGCTTGCCGAT............................................................................................................................................................................................................................................................................................................................1920.50100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCATGAGCTTGCCGATG...........................................................................................................................................................................................................................................................................................................................2020.50100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGAGCTTGCCGATGATGGT......................................................................................................................................................................................................................................................................................................................2220.50100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTGCCGATGATG........................................................................................................................................................................................................................................................................................................................1820.50100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGATGATGGTTACCGT................................................................................................................................................................................................................................................................................................................1820.50100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCTTGCCGATGATGGTTACC..................................................................................................................................................................................................................................................................................................................2420.50100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCCGATGATGGTTACCGT................................................................................................................................................................................................................................................................................................................2220.50100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCCATGAGCTTGCCGATGATGG.......................................................................................................................................................................................................................................................................................................................2520.50100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGCCACTTGCCTTCC.................................................................................................................................................................................................................................................1830.33100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGATGTGAGCCACTTGCCT....................................................................................................................................................................................................................................................2130.33100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGCCACTTGCCTTCCA................................................................................................................................................................................................................................................2030.33100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACCCACAAGCGTGT............................................................................................................................................................................................................................................................................................1870.29200020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAGCCACTTGC......................................................................................................................................................................................................................................................1890.22200020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGATGTGAGCCACTTGC......................................................................................................................................................................................................................................................2190.22200020
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACAAGACCCACAAGCGTGT............................................................................................................................................................................................................................................................................................2170.14100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAGCGTGTGGTGCTCCGTC.................................................................................................................................................................................................................................................................................2270.14100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGACCCACAAGCGTGTGG..........................................................................................................................................................................................................................................................................................2270.14100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGACCCACAAGCGTGT............................................................................................................................................................................................................................................................................................1970.14100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGACCCACAAGCGT..............................................................................................................................................................................................................................................................................................1870.14100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGTTACAAGACCCACAAGCGTGT............................................................................................................................................................................................................................................................................................2670.14100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCGTGTGGTGCTCCGTC.................................................................................................................................................................................................................................................................................2170.14100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGTTACAAGACCCACAAGC................................................................................................................................................................................................................................................................................................2280.13100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCGTTACAAGACCCACAAGC................................................................................................................................................................................................................................................................................................2480.13100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTCGTGATGTGAGCCACTTGCC.....................................................................................................................................................................................................................................................2590.11100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGTCGTGATGTGAGCCACTTGC......................................................................................................................................................................................................................................................2590.11100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTGAGCCACTTGCC.....................................................................................................................................................................................................................................................1990.11100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGATGTGAGCCACTTGCC.....................................................................................................................................................................................................................................................2190.11100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTCGTGATGTGAGCCACT.........................................................................................................................................................................................................................................................2190.11100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTACCGTTACAAGAC........................................................................................................................................................................................................................................................................................................19200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTACCGTTACAAGA.........................................................................................................................................................................................................................................................................................................18200.05100010
dp5
GAGTACCTGCC---------------------------------ACCTG---TCCAGAACTCATACGCGGCTCCATCGGTGAGCTACTCCGCACC-----------GG-CCATCCAGCAGACGTACT--------------------------------------------------------------------CGGCCCCAGCCATCCAGCAGCAGACGTACTCC---------GCACCGGC---C-------------ATCCAGCAGACGTACTCGGCC-------------------CCAGCCATCCAGCA-------------------GCAGACCTATGCCGCCCCCAGCAACGAGTATCTGCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGACCTACTCCGCTCCAGCTGTCCAGAGGACCTA-----------------------------------CTCGGCTCCATCCGTGAGCTACTCGGCCCCGTCCGTGAG--------------------CT----------------------ACTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................CTG---TCCAGAACTCATACGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000002
....................................................................................................................GCAGACGTACT--------------------------------------------------------------------CGGCCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.0020010100000
..........................................................................................................................................................................................................................................................................GCAGACGTACTCGGCC-------------------CC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1821.0020010100000
.........CC---------------------------------ACCTG---TCCAGAACTCATACGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
droPer2
GGCTA------------------CGACTACGCTCCCCCGGCGCCA---GTGGC-------T--------------CC---------------------CGTGCA--GG-TC-----------------TACCAGCCA------------------------GCACCTGCCCCGGTTTACCAGCCAGCTCCCGCTCCCGCTCCAGTCTACCAGC------C---------AGCTCCAGCTCCTGCTCCA-----------------------------------------------------------------------------GTT----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCAGCTCCAGCTCCGGTCTACCAGCCAGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGCACCCATCCGC------ATCCCAGCTCCCGCCCCA------------------------------------------------------------------------------------------GTGC---------AGAG----------------------CTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..CTA------------------CGACTACGCTCCCCCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
..............................................................................................................................................................................................................TACCAGC------C---------AGCTCCAGCTCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
........................................................................................................................................................................................AGCTCCCGCTCCCGCTCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
droAna3
AACAACCTGCAGGAGGATGGCTACCACTACGGCCCTCCCCG---T---------------------------------ACTCCCCT---CGTGATCGACGTGCCG---G---------TGCC-----CCATGAGTCGGCCCCTCCTCCAGTGGTCTA---------------------TGTGCCCC------CC---------------AAAA------C---------GACTCCT------CGTCCGGTCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTCCACCCCCACCACCACCACCACCACCAACT--------------------------------------------------------------------------------------------------AAGC---------------------------------------------------------------------------------------------------GTGTGGTCTA----------CA----------------------CCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACT--------------------------------------------------------------------------------------------------AAGC---------------------------------------------------------------------------------------------------GTGTGGT........................................1911.001010000
.........................................................................................CGTGATCGACGTGCCG---G---------TGCC-----C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACCAACT--------------------------------------------------------------------------------------------------AAGC---------------------------------------------------------------------------------------------------GTGC...........................................1811.001010000
............................................................................................GATCGACGTGCCG---G---------TGCC-----CC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.......................................................................................................................GCC-----CCATGAGTCGGCCCCTCCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...................GCTACCACTACGGCCCTCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..............................................................................ACTCCCCT---CGTGATCGACGTGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
droBip1
GCCC--GTGCC---------------------------------CGTTG---TCCATGAGCA----------------------------GCACC-----------AGGTGATCCAGCAGACCTACT--------CC------------------------GCTCCAGCTCCTGTCC------------------------------AGCAGA------CCTACTCC---------GCTCCTGCTCCT------------------------------------------------------------------------------------------------------------------------------------GTCCAGCAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT---------------------------------------------------ACTCCGCTCCAGCTCCTGTCCAGCAGACCTACTCCGCTCCAGCT------------------------------------------------------------------------------------------CCTGTCCAGC---AGACCTA----------------------CTCSizeHit CountTotal NormTotal
No Reads
droKik1
AACAACCTCCACGAGGATGGCTACCACTACGGAGCTCCCTC---G---------------------------------GAGCCCTTCCCTGTGATCGATCTGCCG---G---------TGCC-----CCACGAGACTGCCCCCGCACCGGT------------------GG------------------------------TCGTCTACAAGC------CCCAGCCCACTCCTCCT------CGTCCCGTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCT---C---CCCC---------------------------------------------------------------------------------------GGTGGTCTACA---AGCCACA----------------------GCCSizeHit CountTotal NormTotal
No Reads
droFic1
GAGTACCTGCC---------------------------------TCCCG---TCCAGGAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCGTGGCCGCCCCCTCCAACGAGTACCTGCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGGCCGCCGAGCCCGAGCCCGCCCACGAGCTGGCCGATGATGGCTACCGCTACAAGACCCACCGTCGCGTGGTCCTGCGTCGCCACCGCCGCGACGTCAACGAGCTGCCCTCCAACGAGTACCTGCCCCCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT----------------------GCCSizeHit CountTotal NormTotal
No Reads
droEle1
GAGTACCTGCC---------------------------------TCCCG---TCCAGGAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCATCGCTGGCCCCAGCAACGAGTACCTGCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTGGAGGCTGAGGCCGAGCCCGCCCACGAGCTGGCTGCTGATGGATACCGCTACAAGACCCACAAGCGCGTGGTGCTCCGCCGCCACCGTCGCGATGTCAACGAGCTG---TCCAACGAGTACTTGCCCCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCC---------AGGA----------------------GGCSizeHit CountTotal NormTotal
No Reads
droRho1
GGCATCCTGAAGGACGATGGCTACCACTACGCCCAGCCCTC---G---------------------------------GTGAAGTT---CG------AGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAGGCTCCTCCCCCACCGAAGGTCGAGTACCTGCCTCCCCCACCCACCAAGAAGG---------------------TGTACGTTGCC---------------------------------------------------CCACCAGTGTACGTGCCTCCCCCAACCAAGAAGGTCGTCTACACCCCACCCCCAACGACCAAGAGGGCTTACGTCGCCCCCAAGGTCGAGTACCTGCCCCCCGCAGAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAG------AAGG---------------------------------------------------------------------------------------------------TCGTCGTCTA----------CA----------------------CCCSizeHit CountTotal NormTotal
No Reads
droBia1
GAGTACCTGCC---------------------------------TCCCG---TCCAGGAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCATCGCTGGCCCCAGCAACGAGTACCTGCCCC---CTGTCGCCCAGGAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGGCTGCCCCAGCCCATGAGCTCGCCGACGATGGCTACCGCTACAAGACCCACCGCCGTGTGGTGCTCCGTCGCCACCGTCGTGATGTCAACGAACTG---TCCAACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTA----------------------CCTSizeHit CountTotal NormTotal
No Reads
droTak1
GAGTACCTGCC---------------------------------TCCCGTCGTCCAGGAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATCATCGCTGGACCCTCCAACGAGTACCTTCCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTTGCTGTTGAGGCTGAGCCCGCCCATGAGCTGGCCGATGATGGCTACCGCTACAAGACCCATAAGCGCGTGGTTCTCCGTCGTCACCGTCGCGATGTGAACGAGCTC---TCCAACGAGTACCTGCCCCCT-------------------------------------------------------------GTCCAG------GAGGCCGTTGCT---------------------------------------------------------------------------------------------CCCTCCAAC------GAGTA----------------------CTTSizeHit CountTotal NormTotal
No Reads
droEug1
GGATA------------------CGACTACTCTCCCCCGGCTCCG---G---C-------T--------------CC-----------------------------GG-TC-----------------TACCAGCCT------------------------GCTCCGGCTCCTGTCTACCAGCCAG------CTCCGGCTCCGGTCTACCAGC------C---------TGCTCCTG------CTCCA-----------------------------------------------------------------------------GTTGTGATC------------------------------------------------------------------------------------------------------------------------------CCAGC----------------------------TCCTGCC----------------------------------------------------------------------------------------------------------------------------------CCAGCTCCAGTTGTGATCCCAGCCCCAGCT---------------------------------------------------------------------------------------------------CCAGTTGT------G------ATCCCAGCTCCAGCTCCCGTGAGGACCTATGTCCCACCTGCACCAATCAGCATCCCAGCTCCAG---------------------------------------CTCCGGTCTACC---ACCCAGC----------------------GCCSizeHit CountTotal NormTotal
No Reads
dm3
GAGTACCTGCC---------------------------------CCCCG---TCCAGAGCTCGTACGCCGCTCCCTCGGTGAGCTACTCCGCACC-----------AG-CCGTGCAGCAGACCTACG--------------------------------------------------------------------CCGCTCCAGCCATCCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGTATGTCGCCCCCAGCAACGAGTACCTGCCTCCTGTGCAGACCTACTCCGCACCGGCC------------------------------------------------------------------------GTCCAGAGGA----------------CCT---------------------------------------------------ACTCCGCACCAG------------------------------CTGTCCAGAGGACCTA-----------------------------------CTCCGCCCCCTCTGTTAGCTACTCGGCACCCTCTGTGAG--------------------CTACTCGGCTCCATCGGTCAGCTACTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCC------------------------------------------------------------------------GTCCAGAGGA----------------CCT---------------------------------------------------ACTCCGC............................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------ACTCCGCACCAG------------------------------CTGTCCAGA................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.............................................................CGTACGCCGCTCCCTCGGTGAGCTACTCCGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GCTCGTACGCCGCTCCCTCGGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................CCCTCGGTGAGCTACTCCGCACC-----------AG-C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGCAACGAGTACCTGCCTCCTGTGC...............................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AGCAGACCTACG--------------------------------------------------------------------CCGCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAGGACCTA-----------------------------------CTCCGCCCC.............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--------------------CTACTCGGCTCCATCGGTC........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACCTGCCTCCTGTGC...............................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCTCTGTGAG--------------------CTACTCGG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................................................................TCCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGTATGTCGCCCCCAGCAA...................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ACGCCGCTCCCTCGGTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTA-----------------------------------CTCCGCCCCCTCTGTTA.....................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ACGCCGCTCCCTCGGTGAGCTACTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACCTA-----------------------------------CTCCGCCCCCT...........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................CCAGCCATCCAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTCGTAT.................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................................TACGCCGCTCCCTCGGTGAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCTCTGTGAG--------------------CTACTCGGC..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................ACGCCGCTCCCTCGGTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------CCT---------------------------------------------------ACTCCGCACCAG------------------------------CTGTC....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCTGTGCAGACCTCTG......................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGTTA------------------CGACTACTCTCCTCCGGCCCCA---G---C-------T--------------CC-----------------------------GG-TT-----------------TACCAGCCA------------------------GCTCCGGCTCCGGTCTACCAGCCCG------CCCCGGCTCCGGTCTACCAGC------C---------TGCTCCT------GCTCCG-----------------------------------------------------------------------------GTC----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCCGCCCCGGCTCCGGTCTACCAGCCAGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCTCCAGTTGT------G------ATCCCAGCTCCTGC-------------------------------------------------------------------------------------------------------------------------------------TCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGTTGT------G------ATCCCAGCTC............................................................................................................................................2111.00100100000000000000
...TA------------------CGACTACTCTCCTCCGGCCCCA---G---C-------T--------------CC-----------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000000000
..TTA------------------CGACTACTCTCCTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
....A------------------CGACTACTCTCCTCCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
...........................................................................................................................................................................................................................................T------GCTCCG-----------------------------------------------------------------------------GTC----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
GGTTA------------------CGACTACTCTCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................TC----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCCGCCCCGGCTCCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000000000100000
.......................................................................................................................................................................GCTCCGGTCTACCAGCCCG------CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000000000100000
...............................................................................................................................................................................CTACCAGCCCG------CCCCGGCTCCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100100000000000000
..............................................................................................................................................................................TCTACCAGCCCG------CCCCGGCTCCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100000000000100000
..................................................................................................................................................................................................................................................GCTCCG-----------------------------------------------------------------------------GTC----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCCGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000000000100000
.......................................................................................................................................................................................................................................................................................................................................C----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCCGCCCCGGCTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100100000000000000
droSec2
GGTTA------------------CGACTACTCTCCTCCGGCCCCA---G---C-------T--------------CC-----------------------------GG-TT-----------------TACCAGCCT------------------------GCTCCAGCTCCGGTCTACCAGCCCG------CCCCGGCTCCGGTCTACCAGC------C---------TGCTCCAG------CACCA-----------------------------------------------------------------------------GTTGTTATC------------------------------------------------------------------------------------------------------------------------------CCTGC----------------------------TCCTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGCTCCAGTTGT------G------ATCCCAGCTCCAGCTCCCG------------------------------------------------------------------------------------------------------TGAA----------------------GTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AACAACCTGCAGGAGGATGGATACCACTATGCCCCACCACG---C---------------------------------GCCCCGGT---CGTCATCGATGTGCCCTACG---------TGCC-----CCACGAGTCTGCCCCACCAGTAGTGGTCTA---------------------CGAGGCCC------CC---------------AAGC------CCAGGCCCACACCCCCT------CGCCCCGTCTACACCCCTCAGCCCGCTGGTGTTCTCAAGGACGATGGCTACCACTACGCCCAGCCTTCCGTGAAATTCGAGGT---------TGCTGCTCCTCCACCACCAAAGGTCGAGTACCTGCCTC---CTCCCACCAAGAAGG---------------------TGGTGATCGCC------------------------------------------------CCACCCCCAGTGTACGTGCCTCCCCCAACCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------AAGG---------------------------------------------------------------------------------------------------TCGTCGTCTA----------CA----------------------CCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GGTTA------------------CGACTACTCTCCTCCGGCCCCG---G---C-------T--------------CC-----------------------------GG-TC-----------------TACCAGCCT------------------------GCTCCGGCTCCGGTCTACCAGCCTG------CTCCGGCTCCGGTCTACCAGC------C---------TGCTCCAG------CTCCG-----------------------------------------------------------------------------GTC----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCTGCTCCAGCTCCCGTCTACCAGCCTGCTCCGGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATTCCAGTCTC------G------ATCCCAGCTCCAGCTCCCGTGAGGGCCTATGTCCCACCCGCACCCATCA------------------------------------------------------------GCATC------CCGGC----------------------TCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTACCAGCCTGCTCCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCAGTCTC------G------ATCCCAGCTCCAGCTCC.....................................................................................................................................2911.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCCGTCTACCAGCCTGCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGTCTACCAGCCTGCTCCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCTCCAGCTCCCGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCGCACCCATCA------------------------------------------------------------GCATC------CC............................2211.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCCGGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCATTCCA........................................................................................................................................................................2011.0010100000
.................................................................................................................................................................GCTCCGGCTCCGGTCTACCAGCCTG------CTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2921.0020200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCCTGCTCCGGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC..............................................................................................................................................................................2011.0010100000
.........................................................................................................................................................................................G------CTCCGGCTCCGGTCTACCAGC------C---------TGCTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2921.0020200000
.......................................................................................................................................................................................................................................................................................................................................C----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCTGCTCCAGCTCCCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCCACCCGCACCCATCA------------------------------------------------------------GCATC------C.............................2711.0010100000
.......................................................................................................................................................................................CTG------CTCCGGCTCCGGTCTACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010001000
...............................................................................................................................................................................................................ACCAGC------C---------TGCTCCAG------CTCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000
.......................................................................................................................................CT------------------------GCTCCGGCTCCGGTCTACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010001000
.........................................................................................................................................................................................................................................CCAG------CTCCG-----------------------------------------------------------------------------GTC----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCTGCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010100000
.............................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------------------------------CCAGCCTGCTCCAGCTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000
.........................................................................................................................................................................................................................................CCAG------CTCCG-----------------------------------------------------------------------------GTC----TA------------------------------------------------------------------------------------------------------------------------------CCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010001000
..............................................................................................................C-----------------TACCAGCCT------------------------GCTCCGGCTCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCAGCCTGCTCCGGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC...............................................................................................................................................................................2130.3310100000
...............................................................................................................................................................................CTACCAGCCTG------CTCCGGCTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310100000
................................................G---C-------T--------------CC-----------------------------GG-TC-----------------TACCAGCCT------------------------GCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010001000
.....................................................................................................................................................................................................GCTCCGGTCTACCAGC------C---------TGCTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010001000
.......................................................................................................................................................................GCTCCGGTCTACCAGCCTG------CTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010001000
............................................................................................................................................................................................................................................G------CTCCG-----------------------------------------------------------------------------GTC----TA------------------------------------------------------------------------------------------------------------------------------CCAGCCTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.2010001000

Generated: 05/19/2015 at 11:43 AM