ID:

dvi_21187

 Coordinate:

scaffold_13049:23891958-23892108 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.8 -11.8 -11.7

Flybase annnotation

CDS [Dvir\GJ14061-cds]; exon [dvir_GLEANR_13904:1]; intron [Dvir\GJ14061-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAATAAGGATTTGCTGCCCATGAAGGCGCATTACTTTCTCTATAATGCCGGTAAAGTGCCCTCAAATCAACTAATATCATTTTACTACACCATCCGATAAGACTGAAACACCAGATCTACGATAAATACTTCTCGTTTATAATAAGTACATTATTTTGTCTAGTTGGGCCGGCGTGCAAGGTGTGCACACAAAAAAATAACTGATAAGACATCTATTCTGGCAGTCAACTAGATAGTCAATAAAAAAAAAA
******************************************************************************************....((...((((((......))).))).))....((((((..((((..((((.((.(((......))))).))))....))))....)))))).****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 M028
head
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 M027
male body		 SRR060665
9_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR1106729
mixed whole adult body
 V053
head
 V047
embryo
 M061
embryo
 SRR060684
140x9_0-2h_embryos_total
 SRR060658
140_ovaries_total
..........................................................................................................AACACCAGATCTGCGATAA.............................................................................................................................. 19 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGGGCCGGCGTGCAAGGTGTG.................................................................. 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TATAATGCCGGTAAAGTGC................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TCTAGTTGGGCCGGCGTGCA......................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..ATAAGGATTTGCTGCCCATGA.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CAAATCAACTAATGTCATTTT........................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CATCCGATAAGACTGAAACA............................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ATTATTTTGTCTAGTTGGGCC................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GGGCCGGCGTGCAGGGTGTG.................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................ACCATCCGATAAGACTGA................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................TTGGGCCGGCGTGCACGGTGTCC................................................................. 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......GATTTGCTGCCCATGAAGGCG............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................TAGTTGGGCCGGCGTGCAAGG...................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TACTACACCATCCGATAAGAC.................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................GAAGGCGCATTACTTTCTCTATAATGC........................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CTACATTATTTTGTCTAGTTG..................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CCGGCGTGCAAGGTGTGCACT.............................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................ACCATCCGATAAGACTGAAAC.............................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ATTGTTTTGTCTAGTTGGGCC................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ATTATTTTGTCTAGTTGGGC.................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CCGGCGTGCAGGGTGTGCACA.............................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................ATAATGCCGGTAAAGTGCCCT............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CATTGTTTTGTCTAGTTGGGC.................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................TAATGCCGGTAAAGTGCCCTC............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TTGTCTGGTTGGGCCGGCGTGC.......................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TAAGGATTTGCTGCCCATGAAGGCGCAT............................................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AACACCAGATCTGCGATAAATC........................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TCGATAGTCAATACAAAAAAA. 21 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GTTGGTCCCGCGTGGAAGG...................................................................... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................TAGATAGTAAATAAAAAAACA. 21 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.GATAAGGATTTGCTCCTCAT...................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................TTATGGGAGTCAACTAGAC................. 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................TAGATAGTAAATAAAGGAAAAA 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................................................TAACGAGTACATTATTTT.............................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GTTATTCCTAAACGACGGGTACTTCCGCGTAATGAAAGAGATATTACGGCCATTTCACGGGAGTTTAGTTGATTATAGTAAAATGATGTGGTAGGCTATTCTGACTTTGTGGTCTAGATGCTATTTATGAAGAGCAAATATTATTCATGTAATAAAACAGATCAACCCGGCCGCACGTTCCACACGTGTGTTTTTTTATTGACTATTCTGTAGATAAGACCGTCAGTTGATCTATCAGTTATTTTTTTTTT
******************************************************************....((...((((((......))).))).))....((((((..((((..((((.((.(((......))))).))))....))))....)))))).****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 M027
male body		 SRR060656
9x160_ovaries_total
 SRR060669
160x9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060675
140x9_ovaries_total
 GSM1528803
follicle cells		 SRR060666
160_males_carcasses_total
 SRR060657
140_testes_total
 SRR060662
9x160_0-2h_embryos_total
.......................................................................................................ACTTTGTGGTCTAGATGCTAT............................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................TTCACGGGAGTTTAGTTGATT................................................................................................................................................................................. 21 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................TCCGCGTAATGAAAGAGATAT............................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................GGGTACTTCCGCGTAATGA........................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GTAGATAAGACCGTCAGTTGA..................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ACCGTCAGTTGATCTATCAGT............ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GTACTTCCGCGTAATGGAAG..................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................TTCCGCGTAATGAAAGAGATA................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................TTTAGTTGATTATAGTAAAAT....................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................GGCCATTTCACGGGAGTTTAG....................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTGTAGATAAGACCGTCAGTT....................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGCGTAGTGAAAGAGATATTA............................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TGAAAGAGATATTACGGCCAT...................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................GGGTACTTCCGCGTAATGGAA...................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGGCTATTCTGACTTTGTGGT.......................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ACTATTCTGTAGATAAGACC.............................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................TCCGCGTAATGGGAGAGATATT.............................................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GAGTTTAGTTGATTATAGTAA.......................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTGTGGTCTAGGTGCTGTTT............................................................................................................................. 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGGCTTTGTAGTCTAGAT.................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................TACCTTTGTGGTCTAGATTC.................................................................................................................................. 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TGGCTTTGTGGTCTAGAAA................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0
..........................................................................ATAGGAAACTGATGTAGTAG............................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................GTTTAGTTGATAATAGAAA.......................................................................................................................................................................... 19 2 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTGCCTATTCAGTAGAAAAG................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................CTATCCTGACTTCTTGGTC......................................................................................................................................... 19 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GACTATTCTGCAGCCAAG................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:23891908-23892158 + dvi_21187 CAATAAGGATTTGCTGCCCATGAAGGCGCATTACTTTCTCTATAATGCCGGTAAAGTGCCC--------------TC--------------------AAATCAACTAATATCATTT------------------------TACTACACCATCCGATAAGACTG-------------AAACACCAGATCTACGATAAATACTTCTCGTTTATAATAAGTACATTATTTTGTCTAGTTGGGCCGGCGTGCAAGGTGTG-CACA-----CAAAAAAATAACTGATAAGACATCT--------------------------ATTCTGGCAGT------CAACTAGATAG---------------------------------------------TCAATAAAAAAAAAA
droMoj3 scaffold_6680:18519308-18519541 + TGATAAGGATTTGCTGCCTATGAAGGCGCATTACTTTCTCTTCAATGCCGGTAAAGTATTT--------------TACGGT----------------ATATTAACTAATCTCATTCAAATTACAACAGGCACGTTGAACAAGTTGGACCTGTTGATAAGAGTA-------------GAATAC-------------------------------------------------------------------------------------------ATAACTGATAAGAAATTG--------------------------ACAC-----AT------CATCTAGTTAAAGTGTAAATAAAGGGTGCATAGATATCAGGGTTCTGATAAGAAGTACAATAAAAAATAAA
droGri2 scaffold_15110:13778211-13778474 - CGATAAGGAATTGCTGCCGATGAAGGCGCATTACTTTCTCTTTAATGCCGGTAAGTATTTAGGAAGTACTTAGTACT-AGTTACAAACAACACG--------------------------------------------CAATTTACATTAACTAATAAGATATTATCTGATTAGATATCGATCAGATT-----------------G-------------------TTTGTAGTATCAAAACTGTGTGCAAAGTGTTTCATAGATAAGAAATAAAGAGCCGATAAGACTCTTATATATATCTCTATATATATATACTTATAGCGGCAATAGATGCTCGCTTGATA------------------------------------------------------------A
droWil2 scf2_1100000004762:2672923-2672976 - CGATAAGGAGCTGCTGCCCATGAAGGCGCATTACTTTCTCTTCAATGCTGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:10014993-10015055 - CGATAAGGAGCTGCTGCCTATGAAGGCGCATTACTTTCTGTTTAATGCCGGTGAGTGGCCA--------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_61:295459-295521 - CGATAAGGAGCTGCTGCCGATGAAGGCGCATTACTTTCTGTTTAATGCCGGTGAGTGGCCA--------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:5942944-5943021 + CGATAAGGAGCTGCTGCCGATGAAGGCGCACTACTTTCTGTTTAATGCCGGTAAGCTTACC--------------CC-CGTTA-AAACAACACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396518:6675-6732 + CGATAAGGAGCTGCTGCCCATGAAGGCGCACTACTTTCTGTTCAATGCCGGTAAGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302391:1164236-1164355 - CGATAAGGAGCTGCTGCCAATGAAGGCACACTACTTTCTCTTCAATGCCGGTAAGCACACC--------------CC-TGT-------------CCCAAAGCCATTAATCT---------------AAGTACCGGGCATCGCTTACATCAGCCGATAAGGTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454113:3023911-3023964 - CGATAAGGAGCTGCTGCCCATGAAGGCGCACTATTTTCTCTTCAATGCCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490993:2119462-2119589 - CGATAAGGAGCTGCTGCCCATGAAGGCGCACTACTTTCTATTCAATGCCGGTAAGTAACTC--------------CC-CCCGA-ACACACCCCCCAGAAATCCATTATTTT---------------AAGTACCGCGCATCGCTTACATCAGCCGATAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779604:19989-20042 + CGATAAAGAGCTGCTGCCCATGAAGGCGCACTATTTTCTCTTCAATGCCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302334:118620-118696 + CGACAAGGAGCTGCTGCCCATGAAGGCGCACTACTTCCTCTTCAACGCCGGTAAGCGACTC--------------CCCT-----------------GAAACCCATTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000414445:528667-528782 - CGATAAGGAGCTGCTGCCCATGAAGGCGCACTACTTTCTCTTCAATGCCGGTAAGTAACTC--------------CC-CCC-------------CGAAAACCCATTAACTT---------------AAGTACCGCGCATCGCTTACATCAGCCGATAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409711:3553215-3553268 + CGATAAGGAGCTACTGCCCATGAAGGCTCACTACTTTCTCTTCAATGCCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3l:11385559-11385612 + CGATAAGGAGCTGCTGCCCATGAAGGCGCACTACTTTCTCTTCAATGCCGGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_0:3864005-3864065 + CGATAAGGAGCTGCTGCCCATGAAGGCGCACTACTTTCTCTTCAATGCCGGCAAGTAGCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 3L:11706406-11706459 + CGATAAGGAGCTGCTGCCCATGAAGGCGCACTATTTTCTCTTCAATGCCGGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAATAAGGATTTGCTGCCCATGAAGGCGCATTACTTTCTCTATAATGCCGGTAAAGTGCCC--------------TC--------------------AAATCAACTAATATCATTT------------------------TACTACACCATCCGATAAGACTG-------------AAACACCAGATCTACGATAAATACTTCTCGTTTATAATAAGTACATTATTTTGTCTAGTTGGGCCGGCGTGCAAGGTGTG-CACA-----CAAAAAAATAACTGATAAGACATCT--------------------------ATTCTGGCAGT------CAACTAGATAG---------------------------------------------TCAATAAAAAAAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................TGGGCCGGCGTGCAAGGTGTG-....................................................................................................................................................2112.002000000000000000001000000000000000000000000000000000000000000010
........................................TATAATGCCGGTAAAGTGC..........................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................TCTAGTTGGGCCGGCGTGCA............................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
..ATAAGGATTTGCTGCCCATGA..............................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................CATCCGATAAGACTG-------------AAACA................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................ATTATTTTGTCTAGTTGGGCC....................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ACCATCCGATAAGACTG-------------A....................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000100000
.......GATTTGCTGCCCATGAAGGCG.........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TAGTTGGGCCGGCGTGCAAGG.........................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................TACTACACCATCCGATAAGAC....................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
.....................GAAGGCGCATTACTTTCTCTATAATGC.....................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CCGGCGTGCAAGGTGTG-CACT-----...........................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................ACCATCCGATAAGACTG-------------AAAC.................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................ATTATTTTGTCTAGTTGGGC.....................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................ATAATGCCGGTAAAGTGCCC--------------T.........................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
..........................................TAATGCCGGTAAAGTGCCC--------------TC--------------------....................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
...TAAGGATTTGCTGCCCATGAAGGCGCAT......................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000100000000000000000000000000000000000000
droMoj3
TGATAAGGATTTGCTGCCTATGAAGGCGCATTACTTTCTCTTCAATGCCGGTAAAGTATTT--------------TACGGT----------------ATATTAACTAATCTCATTCAAATTACAACAGGCACGTTGAACAAGTTGGACCTGTTGATAAGAGTA-------------GAATAC-------------------------------------------------------------------------------------------ATAACTGATAAGAAATTG--------------------------ACAC-----AT------CATCTAGTTAAAGTGTAAATAAAGGGTGCATAGATATCAGGGTTCTGATAAGAAGTACAATAAAAAATAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CGATAAGGAATTGCTGCCGATGAAGGCGCATTACTTTCTCTTTAATGCCGGTAAGTATTTAGGAAGTACTTAGTACT-AGTTACAAACAACACG--------------------------------------------CAATTTACATTAACTAATAAGATATTATCTGATTAGATATCGATCAGATT-----------------G-------------------TTTGTAGTATCAAAACTGTGTGCAAAGTGTTTCATAGATAAGAAATAAAGAGCCGATAAGACTCTTATATATATCTCTATATATATATACTTATAGCGGCAATAGATGCTCGCTTGATA------------------------------------------------------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................ATTTAGGAAGTACTTAGTA..........................................................................................................................................................................................................................................................................................................................................1911.00110
droWil2
CGATAAGGAGCTGCTGCCCATGAAGGCGCATTACTTTCTCTTCAATGCTGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.GATAAGGAGCTGCTGCCCATGAAGGCG.........................................................................................................................................................................................................................................................................................................................................................................................2711.00100001
dp5
CGATAAGGAGCTGCTGCCTATGAAGGCGCATTACTTTCTGTTTAATGCCGGTGAGTGGCCA--------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CGATAAGGAGCTGCTGCCGATGAAGGCGCATTACTTTCTGTTTAATGCCGGTGAGTGGCCA--------------TC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CGATAAGGAGCTGCTGCCGATGAAGGCGCACTACTTTCTGTTTAATGCCGGTAAGCTTACC--------------CC-CGTTA-AAACAACACC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
CGATAAGGAGCTGCTGCCGATT...............................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droBip1
CGATAAGGAGCTGCTGCCCATGAAGGCGCACTACTTTCTGTTCAATGCCGGTAAGTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGATAAGGAGCTGCTGCCAATGAAGGCACACTACTTTCTCTTCAATGCCGGTAAGCACACC--------------CC-TGT-------------CCCAAAGCCATTAATCT---------------AAGTACCGGGCATCGCTTACATCAGCCGATAAGGTCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGATAAGGAGCTGCTGCCCATGAAGGCGCACTATTTTCTCTTCAATGCCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGATAAGGAGCTGCTGCCCATGAAGGCGCACTACTTTCTATTCAATGCCGGTAAGTAACTC--------------CC-CCCGA-ACACACCCCCCAGAAATCCATTATTTT---------------AAGTACCGCGCATCGCTTACATCAGCCGATAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGATAAAGAGCTGCTGCCCATGAAGGCGCACTATTTTCTCTTCAATGCCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGACAAGGAGCTGCTGCCCATGAAGGCGCACTACTTCCTCTTCAACGCCGGTAAGCGACTC--------------CCCT-----------------GAAACCCATTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGATAAGGAGCTGCTGCCCATGAAGGCGCACTACTTTCTCTTCAATGCCGGTAAGTAACTC--------------CC-CCC-------------CGAAAACCCATTAACTT---------------AAGTACCGCGCATCGCTTACATCAGCCGATAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CGATAAGGAGCTACTGCCCATGAAGGCTCACTACTTTCTCTTCAATGCCGGTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droSim2
CGATAAGGAGCTGCTGCCCATGAAGGCGCACTACTTTCTCTTCAATGCCGGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................CTACTTTCTCTTCAATGCCGG..................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
.....AGGAGCTGCTGCCCATGAAGG...........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
droSec2
CGATAAGGAGCTGCTGCCCATGAAGGCGCACTACTTTCTCTTCAATGCCGGCAAGTAGCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..ATAAGGAGCTGCTGCCCATGA..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.GATAAGGAGCTGCTGCCCATGAAGGCG.........................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
droYak3
CGATAAGGAGCTGCTGCCCATGAAGGCGCACTATTTTCTCTTCAATGCCGGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.GATAAGGAGCTGCTGCCCATGAAGGCGC........................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000

Generated: 05/16/2015 at 09:34 PM