ID:

dvi_21164

 Coordinate:

scaffold_13049:23753764-23753914 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.5

Flybase annnotation

exon [dvir_GLEANR_11325:2]; CDS [Dvir\GJ11274-cds]; intron [Dvir\GJ11274-in]

Repeatable elements

NameClassFamilyStrand
(TTTTG)nSimple_repeatSimple_repeat+
(TTG)nSimple_repeatSimple_repeat+
mature
star
  1. scaffold_10324:493716-493736 +
  2. scaffold_12726:2348443-2348463 +
  3. scaffold_12726:2446083-2446103 +
  4. scaffold_12822:2300016-2300036 +
  5. scaffold_12823:1793389-1793409 +
  6. scaffold_12823:2338586-2338606 +
  7. scaffold_12855:2302194-2302214 +
  8. scaffold_12855:8685535-8685555 +
  9. scaffold_12875:8475877-8475897 +
  10. scaffold_12875:13659567-13659587 +
  11. scaffold_12928:4914054-4914074 +
  12. scaffold_12932:536317-536337 +
  13. scaffold_12963:12903454-12903474 +
  14. scaffold_12963:13781099-13781119 +
  15. scaffold_12970:8089843-8089863 +
  16. scaffold_13042:2001808-2001828 +
  17. scaffold_13042:4474279-4474299 +
  18. scaffold_13047:5718491-5718511 +
  19. scaffold_13047:6357912-6357932 +
  20. scaffold_13047:16512191-16512211 +
  21. scaffold_12723:1212738-1212758 +
  22. scaffold_12822:3038400-3038420 +
  23. scaffold_12855:3051068-3051088 +
  24. scaffold_12855:5962389-5962409 +
  25. scaffold_12875:10583776-10583796 +
  26. scaffold_12875:16968883-16968903 +
  27. scaffold_12928:1458193-1458213 +
  28. scaffold_12928:3217556-3217576 +
  29. scaffold_12928:5366413-5366433 +
  30. scaffold_12932:1873089-1873109 +
  31. scaffold_12963:8748677-8748697 +
  32. scaffold_12963:18840427-18840447 +
  33. scaffold_12970:3636880-3636900 +
  34. scaffold_12970:4010158-4010178 +
  35. scaffold_12970:7693662-7693682 +
  36. scaffold_13047:10009170-10009190 +
  37. scaffold_13047:10062564-10062584 +
  38. scaffold_13049:6497158-6497178 +
  39. scaffold_13049:20489459-20489479 +
  40. scaffold_13246:1182396-1182416 +
  41. scaffold_12823:1700822-1700842 -
  42. scaffold_12855:1656270-1656290 -
  43. scaffold_12875:14641192-14641212 -
  44. scaffold_12875:15136288-15136308 -
  45. scaffold_12970:1837446-1837466 -
  46. scaffold_12970:3340411-3340431 -
  47. scaffold_12970:6634411-6634431 -
  48. scaffold_12970:6975504-6975524 -
  49. scaffold_12970:9758794-9758814 -
  50. dvi_14126  scaffold_13042:442093-442113 -
  51. scaffold_13047:10217962-10217982 -
  52. scaffold_13047:10713907-10713927 -
  53. scaffold_13047:11745651-11745671 -
  54. scaffold_13049:1705937-1705957 -
  55. scaffold_13049:3880315-3880335 -
  56. scaffold_13049:6971797-6971817 -
  57. scaffold_13049:14746484-14746504 -
  58. scaffold_13049:14998399-14998419 -
  59. scaffold_13049:21893715-21893735 -
  60. dvi_21164  scaffold_13049:23753885-23753905 -
  61. scaffold_10324:434407-434427 -
  62. scaffold_12723:5089899-5089919 -
  63. scaffold_12726:1189287-1189307 -
  64. scaffold_12726:2450999-2451019 -
  65. scaffold_12822:2016417-2016437 -
  66. scaffold_12855:3903657-3903677 -
  67. scaffold_12875:4387829-4387849 -
  68. scaffold_12875:4475976-4475996 -
  69. scaffold_12875:14374824-14374844 -
  70. scaffold_12928:1028715-1028735 -
  71. scaffold_12928:6044896-6044916 -
  72. scaffold_12963:10702032-10702052 -
  73. scaffold_12963:10857032-10857052 -
  74. scaffold_12963:12697208-12697228 -
  75. scaffold_13047:9203040-9203060 -
  76. scaffold_13047:11366321-11366341 -
  77. scaffold_13047:14648967-14648987 -
  78. scaffold_13047:18912065-18912085 -
  79. scaffold_13049:9592396-9592416 -
  80. scaffold_13049:10249393-10249413 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TATAAAATTGTGTAAAATATGTTAAAGCCAAGCAGCAGCGGACAAATGTGCAAAACATAAACAACAACAACAACAACAACAACAGTAAGAAACCACAGGCGAAAAGCTAAACGATCAAAAACAAAGCAAAACAAAAAACAACAAAAAAAAAAATAAGCAAAAGTGACTGTGAATAATGTTGAGAGCGCCCACACAGCACATTGTGGAACTGGGTTTCGGTACAGCGACAGCAGCAGCAGCCACCGCCACAA
***********************************************************......................................(((.....)))........*************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M061
embryo
 M028
head
 SRR060678
9x140_testes_total
 SRR060667
160_females_carcasses_total
 SRR1106730
embryo_16-30h
 V047
embryo
TATAAAATTGTGTAAAATA........................................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................AACCACAGGCGAAAAGCTAAACGATC....................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................CAACAACAACAGTAAGAAAC.............................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................ACAGCAGCAGCAGCCACCGCC.... 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGCGACAGCAGCAGCAGCCACC....... 22 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................TACAGCGACAGCAGCAGCA............. 19 0 2 0.50 1 0 0 0 1 0 0 0
...........................................................AACAACAACAACAACAACAAC........................................................................................................................................................................... 21 0 20 0.15 3 0 0 0 0 3 0 0
.............................................................CAACAACAACAACAACAACAACA....................................................................................................................................................................... 23 0 20 0.15 3 3 0 0 0 0 0 0
..................................................................................................................................................................................................AGCCCATTGTGGAACT......................................... 16 1 14 0.14 2 0 0 0 0 0 2 0
................................................................................................................................................................................................................................CGACGGCAGCAGCAGCCAC........ 19 1 9 0.11 1 0 0 0 0 0 0 1
..........................................................AAACAACAACAACAACAACAACAAC........................................................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 1 0 0
...............................................................................................................................TAAACAAAAAACAACAAAAAA....................................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

ATATTTTAACACATTTTATACAATTTCGGTTCGTCGTCGCCTGTTTACACGTTTTGTATTTGTTGTTGTTGTTGTTGTTGTTGTCATTCTTTGGTGTCCGCTTTTCGATTTGCTAGTTTTTGTTTCGTTTTGTTTTTTGTTGTTTTTTTTTTTATTCGTTTTCACTGACACTTATTACAACTCTCGCGGGTGTGTCGTGTAACACCTTGACCCAAAGCCATGTCGCTGTCGTCGTCGTCGGTGGCGGTGTT
***************************************************************************************************************************************......................................(((.....)))........*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 M027
male body		 SRR060678
9x140_testes_total
 SRR060654
160x9_ovaries_total
 SRR060656
9x160_ovaries_total
......................................................................................................................................................TTTAGTCGTTTGGACTGACACT............................................................................... 22 3 1 1.00 1 1 0 0 0 0
......................................................................................................................................................TTTAGTCGTTTCGACTGACACT............................................................................... 22 3 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................TTATTACAACTCTCGCGGGTG........................................................... 21 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................CCAAAGCCATGTCGCTGTCGT................... 21 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................CTTATTCGTTTCGACTGACACT............................................................................... 22 3 2 0.50 1 1 0 0 0 0
........................................................................TGTTGTTGTTGTCATTCTT................................................................................................................................................................ 19 0 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................................................ATGTCGCTGCCCTCGTCGTCG........... 21 2 7 0.14 1 0 0 1 0 0
..................................................................................................CCCTTTTCGGTTTGCTTGTTT.................................................................................................................................... 21 3 20 0.10 2 0 2 0 0 0
........................................................................................................................TGTTTCATTTTGTTTTTTGT............................................................................................................... 20 1 10 0.10 1 0 0 0 1 0
......................................................................................................................................TTTTGTTGTTTTTTTTTTT.................................................................................................. 19 0 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:23753714-23753964 - dvi_21164 TATAAA-----------------ATTGTGTAAAA-TATGTTAAAGCCAAGCAGCA-G-CGGACAA-------------------ATGTGCAAAACAT------------AAA---CAA---------CAACAACAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------CAACAACAGTAAGAAACCACAGGCGAAAAGCTA-----AACGATCAAAAACAAA--------------------------------------------------------------------------------------------------------GCAAA----------ACAAAAAACAAC--------AA-AAAAA--------------AAAATAAGCAAAAGTGAC----------T-GTGAATA----ATGTTGAGAGCGCCCAC--ACAGCACATTG--------TGGAACTGGGTTTCGGTACAGCGACA------------------GCA---------------------------------------------------------------------------------------------------------------------------GCAGCAGC----------------------------------------------------------------------CACCG---CC----------ACAA
droMoj3 scaffold_6680:18376830-18377063 - TACATA-------------AACAACTGTGTAAAA-TATGCTAAAGTCAAGCAAAA-G----------------A---CTGCA--------------------------AAAG---CAA---------CAACAACAACAA----------------------------CATTAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA----------------------------------A--------------------------------------------------------------ACTA--------------------------AA--ATCAAAAAC-------------------------------------------------------------------------------------------------------AAACGCAAA----------ACCAGAAACAAA--------CA-CA-AAC-------------ACAA-AAGCAAAAGTGAG----------T-GTGAATA----ATGTTGAGAGCGCCCAC--ACAGCACATCG--------TGGAACTTGGTTTCGGTACAGCGGCT------------------GCCACA-AGCGAAA------------------------------------------------------------------------------------------------------A---------GAAACAGC----------------------------------------------------------------------AAAAG---CA----------ACAA
droGri2 scaffold_15110:13914017-13914243 + CACAAA-CTAA----------------------A--AATTTAAAACTAAGCAGCG-AACGAACAA-------------------ATGTGCAAATCAT------------AAG---CAG---------CAACAACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAA----------GCTAAAAAGTAA----AGCGAGC-----------------------------GC---A---------------------------------------------------------------------------------------------------------------------------------------AC-AAAAGCAAAAGTGAC----------GGGTGAATA----ATGTTGAGAGCGCCCAC--ACAGCACATTG--------TGGAACTCGGTTTCGGTACGTCAGCA------------------G-------------CAGCAGCAGCGACAGCTA-----------------C---CACAA---------------------------------------------------------CAACA------ACAACAGCAGCG----------------------------------------------------------------------A---GA----------ACAA
droWil2 scf2_1100000004511:875622-875929 - TATAAA----------------ATTGGTATAACA-A-ATGCAA------------------------------------------------------------------CAG---CAG------CAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA---ACAACAAGCAA----------------------------GCAACGAGGCAG--------CAGACAGCGACAATTTCTAAGACAACAACAGCAGCAGCAACAA------------CAACAACAATAA----------TCACAACAGCAACACAAGCAATCACAATC------------------AAATCGTAG----------------------------------------------------ATA--------------------------------ACACTGCAACA---------ACAAA---CTA------CAAT-------------------AAAATGACCAAAAATAGTT-TTAGAGG---ACAGATGAGATTTACCAC--ACCAAACTCCACTCAATTGTTATACGCATCATCATCACAGCAACA------------------A------------------------------------------------------------------------------------------------------------------CAGAAAC------AGAGAC---AACAAC----------------------------------------------------------------AG---CAATATAATTCAAATA
dp5 XR_group6:10135346-10135605 + TT-----------------TAAATGTGTGCAAAAGTAAGTTAA----------------------------------TCGCA--------------------------AAAG---CAA---------CAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACACAGTGACAAAAACGAAAAGAAGAGAAACAAAAGGAAAAGAAGACGATAAGCAGAGACGAAA--------------------------------AA-----------------------GTA------AAACAGAAAATCAGTAAAGGAGAAAAGTGAC----------A-GTGAATG----ATGTTGAGAGCGCCCAC--ACAGCACATCG--------TGGAACTCGGCTTCGGAACGAAAACC------------------CCAACAA-------CAACAACAACGACGACGA-----------------C---GTCAG---------------------------------------------------------CAGCGAC------AGCGGCAGCG----------------------------------------------------------------------G---CA----------GCGA
droPer2 scaffold_20:67749-68002 + TT-----------------TAAATGTGTGCAAAAGTAAGTTAA----------------------------------TCGCA--------------------------AAAG---CAA---------CAAAAACAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------AAACACAGTGACAAAAACGAAA---------------AGAAAAGAAGACGATAAGCAGAGACGAAA--------------------------------AA-----------------------GTA------AAACAGAAAATCAGTAAAGGAGAAAAGTGAC----------A-GTGAATG----ATGTTGAGAGCGCCCAC--ACAGCACATCG--------TGGAACTCGGCTTCGGAACGAAAACC------------------CCAGCAA-------CAACAACGACGACG--------------------------TCAG---------------------------------------------------------CAGCGACAGCGGCAGCGGC----------------------------------------------------------------------AGCAG---CA----------GCCA
droAna3 scaffold_12943:4167668-4167944 - ATATA------------------ATTGCATAAAT-GATAATAAAAATAAAAATAA-A----------------T---TTAAAAAATA-----------------------------GG---------TAAAAATTGTAA----------------------------ATTTAAAATAAAAAATACA------ACAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAA----------AATAAAATATAA----AATTTTA-----------------------------AA---ATT------------------------------------------------------------------------------------------------------------------------AAAAGG---------AAAAATAAAAAATAAT----------A-ATATAAA----AAGTAAAAA----TTGT--AAATTACTTCA-----TTTAGTTACTTTGCCCCACAGTAA---CT---AGCAGCAGCCAAATGCTAATAA--------AATAATAAA-----------------TCGAATGGCAACAGCAG---------------------------------------------------------CAGCAGCAGCGGCAGC----------------------------------------------------------------------------AGCAGCAATA----GC-ATAA
droBip1 scf7180000395895:7794-8086 + GAAAGA-----------------AATGGAAAA---TAGTGCAAGTGCAGCAGTTCGG-CTGGCATATTGTTGC-AAGTGG-----------------------------CAG---CAA------CAACAACAACAACAACAACCTACCAGCAAACTAAAAAATGAAAAAGAAAAATTATAAATAAATAGGAAAAATAAAAATAAAATTAAAAAAACTAACCCCAGGTTCAACCCGGAAATAAAAAAAGAAACTAAAAAAGAAAAATTGTTTTTTTTTTGTGGGGCATTTCCTATTGGAGGATGTCGCAGTGCAATGGTGTTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACA------------------AAA---------------------------------------------------------------------------------------------------------------------------GCAACAAC----------------------------------------------------------------------AACAA---CA----------ACAA
droKik1 scf7180000302391:1295386-1295591 + AAACAAACTGAATAAAATTAAAATGAGTG------TGAGTCAA-------------------------------C-----------------------------------AG---CAA------CAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAA---------------------------------------------------------------------------------------------------CAG--------------------------------CAAATGAGTAAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------ATA------AAGCAGA-------AAACAGTGAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCTCCCAC--ACAGCACATCG--------TGCAACTTGGCTTCGGAACGAAGACA------------------ACA---------------------------------------------------TCGA---------------------------------------------------------CACCAAC------AGCAGC-------------------------------------------------------------------------AGCAGCAACA----CCAAGTG
droFic1 scf7180000453488:501844-502081 + CATTT--------------AATATCTACGCATAA--AAATAAAAGTCTGGCAGCC-GGC-AATGG-------------------AAGTGAC---CAAAAGAAGCCACGACAGCGGCAGCAACAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------------------AACAGCAG--------CAACACTACAGC------------------------------------------------------------------------------------------------AGCAACATCAACGCAGTACA---------------GCAGCAAC-----------------------------------------------AGCAACAACAAGGGAAAGTAACGGA------CA--------------------GCGGACAAC-------------------GGACAACGGACACGGGCAGC----------G-GTAGAAAAGGACAGTTGAG--------------------------------------------------------------------------------------------------------------------------------CCGG---------------------------------------------------------CGGA---------GAAAGC---GGCAGCA----------------------------------------------------------------G---C---------------
droEle1 scf7180000491023:317750-318031 - CGTAAA----------------AT-TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTGGGGCATTTCCGA---GAGAATGTCGCAGTGCAATAATGTTGCAACTGTCGGCAGCAGCAAGAGCAACAACAACAACAACAACAG-------CAACAGCAACACGTTAA----------------------------------C------------------------------------------------------------------------------------------------ACCACCACCACCACCAAACAAATCAATCAATTCTGCGGCCAAC------------------------------------------------------------------------------------------------------------AA-CA-AGT-------------GTTTAAGCCAAAAGAGT-----------T-CGGCATG----AAAT-GGAAGCAGCTATACGCTCCACTTCA-----GTGCAGGTCGGTGCTCCGC--------CG------------------CCCACA-AACAACA----------------------------------------ACAA---------------------------------------------------------CAATAAC------AACAAC---AACAACA----------------------------------------------------------------A---C---------------
droRho1 scf7180000779504:29421-29645 + TT-----------------AAAATGTGTGCAAAA-TCAGTTAA-------------------------------C-----------------------------------AG---CAG------CGACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------------------AGCAGCAA---------------------------------------------------------------------------------------------------TAA--------------------------------CAAATGAGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------ATA------AAACAG---------AAAAGCCAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCGCCCAC--ACAGCACATCG--------TGCAACTCGGTTTCGGAACGAAGACG------------------TCGACGA-------CAACGACAACATCGACAG-----------------C---GGCAG---------------------------------------------------------CAACTGC------AGCAGC--------------------------------------------------------------AGC--------AGCAGCAACA----TCTAGCG
droBia1 scf7180000302126:2974569-2974802 - GT-----------------TGCAGCTTAGCGGCA-GCG----------------------------------------------------------------------GCAG---CAG---------CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGC---------------------------------------------AGCAGCAACA--ACAGGAA------------------------CAGTATGAACAGTAACAACAGC---AAAAACAGTATGAACAGCAACAACAG----------CCACAG--------------------------------CAACAACGGGAATGGTTTGAAC---------------------------------------------------------------------------------------------------------------------------------------AAAAAACAACAG-----------------------------------------------------------------------------------------------------------------CAA-------CAGCAACAAC----------------------------------GGGAGTAATATGAACAGTACCAACAGCGACAGCAACAACAGTATGAACACTAACAAC-------A------GCAAC--------------------------------------------------------------A-----------A---CAGTATGA-AC-ACTA
droTak1 scf7180000415349:81166-81348 + TT-----------------AAAATGTGTGCAAAA-TCAGTTAA-------------------------------C-----------------------------------AG---CAG------CAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA------------------------------GCAGAAGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAATGAGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------TT-------------------CA-AAAAGCCAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCGCCTAC--ACAGCACATCG--------TGCAACTCGGCTTCGGAACGAAGACA------------------ACG---------------------------------------------------------------------------------------------------------------------AC------AGCAGC-------------------------------------------------------------------------AGCAGCA----------AC-A
droEug1 scf7180000409711:3416671-3416904 - AAACAAACTGAATAAAATTAAAATGTGTGCAAAG-TCAGTTAA-------------------------------C-----------------------------------AA---CAA------CAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA---ATAACAAACAACAACAACAACTTAGAAGCAGCAGCAACAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAATAAGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------T-------------------TAAAAAAAGCCAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCGCCCAC--ACAGCACATCG--------TGCAACTCGGCTTCGGAACGAAGACA------------------ACAACAA-------CAACAAAAACAACG--------------------------TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACA
dm3 chr3L:11535698-11535879 - TT-----------------AAAATGTGTGCAAAA-TCAGTTAA-------------------------------CAGTCGCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAATAAGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------T-------------------GAATAAAAGCCAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCGCCCAC--TCAGCACATCG--------TGCAAATCGGCTTCGGAACGAAGACG------------------ACCACAA-------CAACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------ACAG
droSim2 3l:11256162-11256376 - TT-----------------AAAATGTGTGCAAAA-TCAGTTAA-------------------------------CAGTCGCA--------------------------GCAG---CAG------CAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA------------------------------GCAGCAGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAATGAGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------T-------------------GAATAAAAGCCAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCGCCCAC--TCAGCACATCG--------TGCAAATCGGCTTCGGAACGAAGACG------------------ACCACAA-------CAACAACAA--------------------------------------------------------------------------------------------------CA------GCAGC--------------------------------------------------------------AGC--------AGCAGCAACA----CCAGGCG
droSec2 scaffold_21:97694-97928 + ACTAAA-----------------AACGGCAGAAG-ACACTAAG--C---------------------------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATAACA---ACCAAA------------------------------------------GCG--ACAACTG------------------------CAACACCAACGATGGCCTCACC---AAAAA------------CAACACTAA-----------------------------------------------------------------------------------------------------------------------------------GGAACACAAACAAA------CA--------------------ACAAA---C---------------------------------------------------------T----AAGGAAGAAATATC-AC--AAAAAACAG-----------AAA--------------------------------------------GTG-------CAGCTACATC----------------------------------ACAAATAAAGGCCGATAAACCAACAGCACTGCAAGTAAAACCACAAGAACTAACGAA-------A------GTAGC--------------------------------------------------------------AGA--------GCCCACAACA----CC-ACAA
droYak3 3R:18798229-18798441 + AGCAGC-----------------AGCAG-CAACA-GCA-GCAA------------------------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAACAACA------------G-------CAACA--------------------------ACA--GCAGCAG--------CA-ACAGCAACAACAGCAAAAGCAGCAACAGCAGCAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAG-------CAACAGCAGCAACAACAG-----------------C---AACAG---------------------------------------------------------CAGCAAC------AGCAGCAGCA---GCAGCAAATTGCCGCAGTCGCAGCAGCCAAATCGCATAAAAGTAATGCCACAGACGTAATCGCCACCG---CA----------ACAC
droEre2 scaffold_4690:15698633-15698890 + TTATGT-----------------ATTGTATATAA-TGTTTCTAGGTCAAATGTCGAG-CAG----------------TCACT--------------------------GGTG---CAA---------CAACAACAACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGACACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAACAACAACAACGACA---------------CCAGAACAGCACATTTAACAACAACAACAACAACCAT---------------------GCACCACAGCA---------ACACT---C-------------------------------------------------------------------------------------TTCACCA--------AACAACCAGAC-------CAATAGTAGCCA--------------CCATCAT-------CATCATCAACAACCACAACATGCCTTAGCCAAAAGTCTCAGCAG---------------------------------------------------------CAGCAAC------AGCAAC---AACAGCA----------------------------------------------------------------G---C---------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TATAAA-----------------ATTGTGTAAAA-TATGTTAAAGCCAAGCAGCA-G-CGGACAA-------------------ATGTGCAAAACAT------------AAA---CAA---------CAACAACAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------CAACAACAGTAAGAAACCACAGGCGAAAAGCTA-----AACGATCAAAAACAAA--------------------------------------------------------------------------------------------------------GCAAA----------ACAAAAAACAAC--------AA-AAAAA--------------AAAATAAGCAAAAGTGAC----------T-GTGAATA----ATGTTGAGAGCGCCCAC--ACAGCACATTG--------TGGAACTGGGTTTCGGTACAGCGACA------------------GCA---------------------------------------------------------------------------------------------------------------------------GCAGCAGC----------------------------------------------------------------------CACCG---CC----------ACAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
TATAAA-----------------ATTGTGTAAAA-TA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCACAGGCGAAAAGCTA-----AACGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------CAACAACAGTAAGAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------GCA---------------------------------------------------------------------------------------------------------------------------GCAGCAGC----------------------------------------------------------------------CACCG---CC----------....2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACA------------------GCA---------------------------------------------------------------------------------------------------------------------------GCAGCAGC----------------------------------------------------------------------CACC....................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCGACA------------------GCA---------------------------------------------------------------------------------------------------------------------------GCAGCA................................................................................................1920.501000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................AA---CAA---------CAACAACAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------CAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000000000000000003000000000000000000000000000000000000000000000
...................................................................................................................CAA---------CAACAACAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------CAACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.153003000000000000000000000000000000000000000000000000000000000000
.............................................................................................................AAA---CAA---------CAACAACAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------CAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000001000000000000000000000000000000000000000000000
droMoj3
TACATA-------------AACAACTGTGTAAAA-TATGCTAAAGTCAAGCAAAA-G----------------A---CTGCA--------------------------AAAG---CAA---------CAACAACAACAA----------------------------CATTAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA----------------------------------A--------------------------------------------------------------ACTA--------------------------AA--ATCAAAAAC-------------------------------------------------------------------------------------------------------AAACGCAAA----------ACCAGAAACAAA--------CA-CA-AAC-------------ACAA-AAGCAAAAGTGAG----------T-GTGAATA----ATGTTGAGAGCGCCCAC--ACAGCACATCG--------TGGAACTTGGTTTCGGTACAGCGGCT------------------GCCACA-AGCGAAA------------------------------------------------------------------------------------------------------A---------GAAACAGC----------------------------------------------------------------------AAAAG---CA----------ACAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CACAAA-CTAA----------------------A--AATTTAAAACTAAGCAGCG-AACGAACAA-------------------ATGTGCAAATCAT------------AAG---CAG---------CAACAACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATAA----------GCTAAAAAGTAA----AGCGAGC-----------------------------GC---A---------------------------------------------------------------------------------------------------------------------------------------AC-AAAAGCAAAAGTGAC----------GGGTGAATA----ATGTTGAGAGCGCCCAC--ACAGCACATTG--------TGGAACTCGGTTTCGGTACGTCAGCA------------------G-------------CAGCAGCAGCGACAGCTA-----------------C---CACAA---------------------------------------------------------CAACA------ACAACAGCAGCG----------------------------------------------------------------------A---GA----------ACAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGAC----------GGGTGAATA----ATGTTGAGAG............................................................................................................................................................................................................................................................................................................2711.00101
droWil2
TATAAA----------------ATTGGTATAACA-A-ATGCAA------------------------------------------------------------------CAG---CAG------CAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA---ACAACAAGCAA----------------------------GCAACGAGGCAG--------CAGACAGCGACAATTTCTAAGACAACAACAGCAGCAGCAACAA------------CAACAACAATAA----------TCACAACAGCAACACAAGCAATCACAATC------------------AAATCGTAG----------------------------------------------------ATA--------------------------------ACACTGCAACA---------ACAAA---CTA------CAAT-------------------AAAATGACCAAAAATAGTT-TTAGAGG---ACAGATGAGATTTACCAC--ACCAAACTCCACTCAATTGTTATACGCATCATCATCACAGCAACA------------------A------------------------------------------------------------------------------------------------------------------CAGAAAC------AGAGAC---AACAAC----------------------------------------------------------------AG---CAATATAATTCAAATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................ACAAGCAA----------------------------GCAACGAGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..............................................................................................................AG---CAG------CAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA---ACAACAAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.22200020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.15300030
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACAA------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAA------------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAA------------CAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
dp5
TT-----------------TAAATGTGTGCAAAAGTAAGTTAA----------------------------------TCGCA--------------------------AAAG---CAA---------CAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACACAGTGACAAAAACGAAAAGAAGAGAAACAAAAGGAAAAGAAGACGATAAGCAGAGACGAAA--------------------------------AA-----------------------GTA------AAACAGAAAATCAGTAAAGGAGAAAAGTGAC----------A-GTGAATG----ATGTTGAGAGCGCCCAC--ACAGCACATCG--------TGGAACTCGGCTTCGGAACGAAAACC------------------CCAACAA-------CAACAACAACGACGACGA-----------------C---GTCAG---------------------------------------------------------CAGCGAC------AGCGGCAGCG----------------------------------------------------------------------G---CA----------GCGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GTGAATG----ATGTTGAGAGCGCCC.......................................................................................................................................................................................................................................................................................................2311.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATCG--------TGGAACTCGGCTTCGG................................................................................................................................................................................................................................................................2411.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----------A-GTGAATG----ATGTTGAGAGCGCCCA......................................................................................................................................................................................................................................................................................................2611.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--ACAGCACATCG--------TGGAACTCGGCTT...................................................................................................................................................................................................................................................................2711.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACGACGACGA-----------------C---...............................................................................................................................................................................19130.0810010000000
droPer2
TT-----------------TAAATGTGTGCAAAAGTAAGTTAA----------------------------------TCGCA--------------------------AAAG---CAA---------CAAAAACAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------------------------------------------------------------------------------AAACACAGTGACAAAAACGAAA---------------AGAAAAGAAGACGATAAGCAGAGACGAAA--------------------------------AA-----------------------GTA------AAACAGAAAATCAGTAAAGGAGAAAAGTGAC----------A-GTGAATG----ATGTTGAGAGCGCCCAC--ACAGCACATCG--------TGGAACTCGGCTTCGGAACGAAAACC------------------CCAGCAA-------CAACAACGACGACG--------------------------TCAG---------------------------------------------------------CAGCGACAGCGGCAGCGGC----------------------------------------------------------------------AGCAG---CA----------GCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ATATA------------------ATTGCATAAAT-GATAATAAAAATAAAAATAA-A----------------T---TTAAAAAATA-----------------------------GG---------TAAAAATTGTAA----------------------------ATTTAAAATAAAAAATACA------ACAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAA----------AATAAAATATAA----AATTTTA-----------------------------AA---ATT------------------------------------------------------------------------------------------------------------------------AAAAGG---------AAAAATAAAAAATAAT----------A-ATATAAA----AAGTAAAAA----TTGT--AAATTACTTCA-----TTTAGTTACTTTGCCCCACAGTAA---CT---AGCAGCAGCCAAATGCTAATAA--------AATAATAAA-----------------TCGAATGGCAACAGCAG---------------------------------------------------------CAGCAGCAGCGGCAGC----------------------------------------------------------------------------AGCAGCAATA----GC-ATAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAG---------------------------------------------------------CAGCAGCAGCGGCA...................................................................................................2150.201000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAG---------------------------------------------------------CAGCAGCAGCGGC....................................................................................................2150.201000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---------------------------------------------------------CAGCAGCAGCGGCAGC----------------------------------------------------------------------------AGCAGC...............26130.081010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------------------------------------------------------CAGCAGCAGCGGCAGC----------------------------------------------------------------------------AGCAGC...............24150.071010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCGGCAGC----------------------------------------------------------------------------AGCAGC...............22200.051000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------------------------------------------------------CAGCAGCAGCGGCAGC----------------------------------------------------------------------------A....................20200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---------------------------------------------------------CAGCAGCAGCGGCAGC----------------------------------------------------------------------------AGCA.................24200.051000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---------------------------------------------------------CAGCAGCAGCGGCAGC----------------------------------------------------------------------------A....................22200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCGGCAGC----------------------------------------------------------------------------AGCAGC...............19200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------------------------------------------------------CAGCAGCAGCGGCAGC----------------------------------------------------------------------------AGCA.................22200.051000001
droBip1
GAAAGA-----------------AATGGAAAA---TAGTGCAAGTGCAGCAGTTCGG-CTGGCATATTGTTGC-AAGTGG-----------------------------CAG---CAA------CAACAACAACAACAACAACCTACCAGCAAACTAAAAAATGAAAAAGAAAAATTATAAATAAATAGGAAAAATAAAAATAAAATTAAAAAAACTAACCCCAGGTTCAACCCGGAAATAAAAAAAGAAACTAAAAAAGAAAAATTGTTTTTTTTTTGTGGGGCATTTCCTATTGGAGGATGTCGCAGTGCAATGGTGTTGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACA------------------AAA---------------------------------------------------------------------------------------------------------------------------GCAACAAC----------------------------------------------------------------------AACAA---CA----------ACAASizeHit CountTotal NormTotal
No Reads
droKik1
AAACAAACTGAATAAAATTAAAATGAGTG------TGAGTCAA-------------------------------C-----------------------------------AG---CAA------CAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAA---------------------------------------------------------------------------------------------------CAG--------------------------------CAAATGAGTAAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------ATA------AAGCAGA-------AAACAGTGAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCTCCCAC--ACAGCACATCG--------TGCAACTTGGCTTCGGAACGAAGACA------------------ACA---------------------------------------------------TCGA---------------------------------------------------------CACCAAC------AGCAGC-------------------------------------------------------------------------AGCAGCAACA----CCAAGTGSizeHit CountTotal NormTotal
No Reads
droFic1
CATTT--------------AATATCTACGCATAA--AAATAAAAGTCTGGCAGCC-GGC-AATGG-------------------AAGTGAC---CAAAAGAAGCCACGACAGCGGCAGCAACAGCAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------------------AACAGCAG--------CAACACTACAGC------------------------------------------------------------------------------------------------AGCAACATCAACGCAGTACA---------------GCAGCAAC-----------------------------------------------AGCAACAACAAGGGAAAGTAACGGA------CA--------------------GCGGACAAC-------------------GGACAACGGACACGGGCAGC----------G-GTAGAAAAGGACAGTTGAG--------------------------------------------------------------------------------------------------------------------------------CCGG---------------------------------------------------------CGGA---------GAAAGC---GGCAGCA----------------------------------------------------------------G---C---------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGTAAA----------------AT-TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTGGGGCATTTCCGA---GAGAATGTCGCAGTGCAATAATGTTGCAACTGTCGGCAGCAGCAAGAGCAACAACAACAACAACAACAG-------CAACAGCAACACGTTAA----------------------------------C------------------------------------------------------------------------------------------------ACCACCACCACCACCAAACAAATCAATCAATTCTGCGGCCAAC------------------------------------------------------------------------------------------------------------AA-CA-AGT-------------GTTTAAGCCAAAAGAGT-----------T-CGGCATG----AAAT-GGAAGCAGCTATACGCTCCACTTCA-----GTGCAGGTCGGTGCTCCGC--------CG------------------CCCACA-AACAACA----------------------------------------ACAA---------------------------------------------------------CAATAAC------AACAAC---AACAACA----------------------------------------------------------------A---C---------------SizeHit CountTotal NormTotal
No Reads
droRho1
TT-----------------AAAATGTGTGCAAAA-TCAGTTAA-------------------------------C-----------------------------------AG---CAG------CGACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA------------------------------------AGCAGCAA---------------------------------------------------------------------------------------------------TAA--------------------------------CAAATGAGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------ATA------AAACAG---------AAAAGCCAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCGCCCAC--ACAGCACATCG--------TGCAACTCGGTTTCGGAACGAAGACG------------------TCGACGA-------CAACGACAACATCGACAG-----------------C---GGCAG---------------------------------------------------------CAACTGC------AGCAGC--------------------------------------------------------------AGC--------AGCAGCAACA----TCTAGCGSizeHit CountTotal NormTotal
No Reads
droBia1
GT-----------------TGCAGCTTAGCGGCA-GCG----------------------------------------------------------------------GCAG---CAG---------CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGC---------------------------------------------AGCAGCAACA--ACAGGAA------------------------CAGTATGAACAGTAACAACAGC---AAAAACAGTATGAACAGCAACAACAG----------CCACAG--------------------------------CAACAACGGGAATGGTTTGAAC---------------------------------------------------------------------------------------------------------------------------------------AAAAAACAACAG-----------------------------------------------------------------------------------------------------------------CAA-------CAGCAACAAC----------------------------------GGGAGTAATATGAACAGTACCAACAGCGACAGCAACAACAGTATGAACACTAACAAC-------A------GCAAC--------------------------------------------------------------A-----------A---CAGTATGA-AC-ACTASizeHit CountTotal NormTotal
No Reads
droTak1
TT-----------------AAAATGTGTGCAAAA-TCAGTTAA-------------------------------C-----------------------------------AG---CAG------CAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA------------------------------GCAGAAGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAATGAGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------TT-------------------CA-AAAAGCCAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCGCCTAC--ACAGCACATCG--------TGCAACTCGGCTTCGGAACGAAGACA------------------ACG---------------------------------------------------------------------------------------------------------------------AC------AGCAGC-------------------------------------------------------------------------AGCAGCA----------AC-ASizeHit CountTotal NormTotal
No Reads
droEug1
AAACAAACTGAATAAAATTAAAATGTGTGCAAAG-TCAGTTAA-------------------------------C-----------------------------------AA---CAA------CAACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA---ATAACAAACAACAACAACAACTTAGAAGCAGCAGCAACAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAATAAGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------T-------------------TAAAAAAAGCCAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCGCCCAC--ACAGCACATCG--------TGCAACTCGGCTTCGGAACGAAGACA------------------ACAACAA-------CAACAAAAACAACG--------------------------TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACASizeHit CountTotal NormTotal
No Reads
dm3
TT-----------------AAAATGTGTGCAAAA-TCAGTTAA-------------------------------CAGTCGCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAATAAGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------T-------------------GAATAAAAGCCAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCGCCCAC--TCAGCACATCG--------TGCAAATCGGCTTCGGAACGAAGACG------------------ACCACAA-------CAACAACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA----------ACAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAACGAAGACG------------------ACCAC...............................................................................................................................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------TGCAAATCGGCTTCGGAACG............................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CAGTTAA-------------------------------CAGTCGCA--------------------------GCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC--TCAGCACATCG--------TGCAAATCGGC.....................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------------------------------------CAA--------------------------------CAAATAAGTGAATTATAGTGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------T-------------------GATC.............................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAACGAAGACG------------------ACCACAA-------C.....................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG--------TGCAAATCGGCTTCGGAACGAAGAC.......................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------T-------------------GAAT.............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG--------TGCAAATCGGCTTCGGA...............................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
....................................CAGTTAA-------------------------------CAGTCGCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......................................TTAA-------------------------------CAGTCGCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCG--------TGCAAATCGGCTTCGGAACGAA..........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.T-----------------AAAATGTGTGCAAAA-TCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCCAC--TCAGCACATCG--------T...............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTTCGGAACGAAGACG------------------ACCA................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAACGAAGACG------------------ACCACAA-------CAACAA................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGTGACAAA------------------------------------------------------------------------------------------------------------T-------------------GAATAAAAG........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGCCAAAAGTGAC----------A-GTGAATA----A.....................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG--------TGCAAATCGGCTTCGGAACGA...........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCAAAAGTGAC----------A-GT...............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------T-------------------GAATAAAA.........................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAGTGAC----------A-GTGAATA----ATGTTG................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAACGAAGACG------------------ACCACAA-------CAA...................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAACGAAGACG------------------ACCACAA-------CAAC..................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAATAAGTGAATTATAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGAACGAAGACG------------------ACCACAA-------CAACA.................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCG--------TGCAAATCGGCTTCGGAAC.............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAAGACG------------------ACCACAA-------C.....................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCAAAAGTGAC----------A-GTGA.............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------T-------------------GAAT.............................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTTCGGAACGAAGACG------------------ACCACAA-------C.....................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCAAAAGTGAC----------A-GTG..............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCGGCTTCGGAACGAAG.........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAGAGCGCCCAC--TCAGCACATCG--------TG..............................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAAAGCCAAAAGTGAC----------A-GTGAAT...........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCG--------TGCAAATCGGCTTCGGA...............................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
........................................TAA-------------------------------CAGTCGCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................TAA-------------------------------CAGTCGCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AA-------------------------------CAGTCGCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100010000000000000000000000000000000
.............................................................................TCGCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AA-------------------------------CAGTCGCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1980.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................AG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................AGTCGCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CAGTCGCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................G---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GCA--------------------------GCAG---CAG---------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TT-----------------AAAATGTGTGCAAAA-TCAGTTAA-------------------------------CAGTCGCA--------------------------GCAG---CAG------CAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA------------------------------GCAGCAGCAGCAA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAATGAGTGAATTATAGTGACAAA------------------------------------------------------------------------------------------------------------T-------------------GAATAAAAGCCAAAAGTGAC----------A-GTGAATA----ATGTTGAGAGCGCCCAC--TCAGCACATCG--------TGCAAATCGGCTTCGGAACGAAGACG------------------ACCACAA-------CAACAACAA--------------------------------------------------------------------------------------------------CA------GCAGC--------------------------------------------------------------AGC--------AGCAGCAACA----CCAGGCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------------------CAAATGAGTGAATTATAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000200000
..................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------------------------------------------------------------------------------CAA--------------------------------CAAATGAGTGAATTATAGTGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG--------TGCAAATCGGCTTCGGAACGA...........................................................................................................................................................................................................................................................2411.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCCAAAAGTGAC----------A-GT...............................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------ACCACAA-------CAACAACAA--------------------------------------------------------------------------------------------------CA------GC.................................................................................................2120.50100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA--------------------------------------------------------------------------------------------------CA------GCAGC--------------------------------------------------------------AGC--------AGCAGC...............24200.05100010000000000000
droSec2
ACTAAA-----------------AACGGCAGAAG-ACACTAAG--C---------------------------------------------------------------------------------CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATAACA---ACCAAA------------------------------------------GCG--ACAACTG------------------------CAACACCAACGATGGCCTCACC---AAAAA------------CAACACTAA-----------------------------------------------------------------------------------------------------------------------------------GGAACACAAACAAA------CA--------------------ACAAA---C---------------------------------------------------------T----AAGGAAGAAATATC-AC--AAAAAACAG-----------AAA--------------------------------------------GTG-------CAGCTACATC----------------------------------ACAAATAAAGGCCGATAAACCAACAGCACTGCAAGTAAAACCACAAGAACTAACGAA-------A------GTAGC--------------------------------------------------------------AGA--------GCCCACAACA----CC-ACAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................AACGGCAGAAG-ACACTAAG--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droYak3
AGCAGC-----------------AGCAG-CAACA-GCA-GCAA------------------------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAACAACA------------G-------CAACA--------------------------ACA--GCAGCAG--------CA-ACAGCAACAACAGCAAAAGCAGCAACAGCAGCAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAG-------CAACAGCAGCAACAACAG-----------------C---AACAG---------------------------------------------------------CAGCAAC------AGCAGCAGCA---GCAGCAAATTGCCGCAGTCGCAGCAGCCAAATCGCATAAAAGTAATGCCACAGACGTAATCGCCACCG---CA----------ACACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGACGTAATCGCCACCG---CA----------ACA.2411.00100010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGCAACAGCAGCAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC..................................................................................................................................................................................................................................2320.50101000000000
.......................................GCAA------------------------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAACAACA------------G-------CAACA--------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2440.25101000000000
AGCAGC-----------------AGCAG-CAACA-GCA-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10202000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAG-------C.....................................................................................................................................................................................................................27150.07100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC------AGCAGCAGCA---GCA....................................................................................19200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------------------------------------------------------CAGCAAC------AGCAGCAGCA---GCAGC..................................................................................24200.05100010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAG-----------------C---AACAG---------------------------------------------------------CAGCAAC------....................................................................................................20200.05100000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................A--GCAGCAG--------CA-ACAGCAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC------AGCAGCAGCA---GC.....................................................................................19200.05100010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAG-------CAACAGCAGCA...........................................................................................................................................................................................................21200.05101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAG-------CA....................................................................................................................................................................................................................23200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---------------------------------------------------------CAGCAAC------AGCAGCAGCA---G......................................................................................23200.05101000000000
...........................................................................................................................................................................................................................................................................................................................................................CAACA------------G-------CAACA--------------------------ACA--GCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................A------------G-------CAACA--------------------------ACA--GCAGCAG--------CA-ACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAG-------CAACAGCA..............................................................................................................................................................................................................24200.05101000000000
.GCAGC-----------------AGCAG-CAACA-GCA-GCAA------------------------------------------------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAG-----------------C---AACAG---------------------------------------------------------CAGC.............................................................................................................20200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................CA------------G-------CAACA--------------------------ACA--GCAGCAG--------CA-ACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAG-------CAACAGCAG.............................................................................................................................................................................................................20200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAG-------CAACAGCA..............................................................................................................................................................................................................19200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---------------------------------------------------------CAGCAAC------AGCAGCAGCA---GC.....................................................................................24200.05101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGCAG-------CA....................................................................................................................................................................................................................20200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................G-------CAACA--------------------------ACA--GCAGCAG--------CA-A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................CA------------G-------CAACA--------------------------ACA--GCAGCAG--------CA-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
AGCAGC-----------------AGCAG-CAACA-GCA-GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010000000
droEre2
TTATGT-----------------ATTGTATATAA-TGTTTCTAGGTCAAATGTCGAG-CAG----------------TCACT--------------------------GGTG---CAA---------CAACAACAACAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAGACACAACAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAACAACAACAACGACA---------------CCAGAACAGCACATTTAACAACAACAACAACAACCAT---------------------GCACCACAGCA---------ACACT---C-------------------------------------------------------------------------------------TTCACCA--------AACAACCAGAC-------CAATAGTAGCCA--------------CCATCAT-------CATCATCAACAACCACAACATGCCTTAGCCAAAAGTCTCAGCAG---------------------------------------------------------CAGCAAC------AGCAAC---AACAGCA----------------------------------------------------------------G---C---------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCA--------AACAACCAGAC-------CAAT..........................................................................................................................................................................................................................................................2111.0010001000
..............................................................................CACT--------------------------GGTG---CAA---------CAACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAGTCTCAGCAG---------------------------------------------------------CAGC.............................................................................................................1911.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC-------CAATAGTAGCCA--------------CCATCAT-------......................................................................................................................................................................................................................2211.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGCA---------ACACT---C-------------------------------------------------------------------------------------TTCACC.........................................................................................................................................................................................................................................................................................2011.0010100000
...............................................AAATGTCGAG-CAG----------------TCACT--------------------------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC------AGCAAC---AACAGCA----------------------------------------------------------------G---C---------------20200.1021100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC------AGCAAC---AACAGCA----------------------------------------------------------------G---................20200.0511000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---------------------------------------------------------CAGCAAC------AGCAAC---AA.........................................................................................20200.0510001000

Generated: 05/16/2015 at 09:20 PM