ID:

dvi_21144

 Coordinate:

scaffold_13049:23574780-23574930 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.5 -33.4 -32.8

Flybase annnotation

CDS [Dvir\GJ14044-cds]; exon [dvir_GLEANR_13888:1]; intron [Dvir\GJ14044-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
mature
  1. scaffold_12734:57-75 +
  2. scaffold_12823:2005685-2005703 +
  3. scaffold_12875:3509976-3509994 +
  4. scaffold_12875:4728152-4728170 +
  5. scaffold_12875:6509321-6509339 +
  6. scaffold_12875:9918133-9918151 +
  7. scaffold_12875:16655864-16655882 +
  8. scaffold_12928:4670433-4670451 +
  9. scaffold_12928:7680284-7680302 +
  10. scaffold_12932:1556898-1556916 +
  11. scaffold_12970:1792835-1792853 +
  12. scaffold_12970:10281591-10281609 +
  13. scaffold_13047:6086639-6086657 +
  14. scaffold_13047:11245310-11245328 +
  15. scaffold_13047:11649748-11649766 +
  16. scaffold_13049:4884177-4884195 +
  17. scaffold_13049:11011838-11011856 +
  18. scaffold_13049:17134879-17134897 +
  19. dvi_21144  scaffold_13049:23574823-23574841 +
  20. scaffold_13246:1308455-1308473 +
  21. scaffold_12823:1689889-1689907 +
  22. scaffold_12855:2541112-2541130 +
  23. scaffold_12855:4493213-4493231 +
  24. scaffold_12875:6004276-6004294 +
  25. scaffold_12875:6521399-6521417 +
  26. scaffold_12875:17226914-17226932 +
  27. scaffold_12928:2017165-2017183 +
  28. scaffold_12928:3924135-3924153 +
  29. scaffold_12928:5383043-5383061 +
  30. scaffold_12928:6516247-6516265 +
  31. scaffold_12932:962819-962837 +
  32. scaffold_12963:7435901-7435919 +
  33. scaffold_12963:8663287-8663305 +
  34. scaffold_12963:15827150-15827168 +
  35. scaffold_12970:2995690-2995708 +
  36. scaffold_13042:496388-496406 +
  37. scaffold_13042:2355858-2355876 +
  38. scaffold_13047:3383143-3383161 +
  39. scaffold_13246:1359463-1359481 +
  40. scaffold_13324:2674435-2674453 +
  41. scaffold_12472:170854-170872 +
  42. scaffold_12472:337393-337411 +
  43. scaffold_12855:7604882-7604900 +
  44. scaffold_12875:16489291-16489309 +
  45. scaffold_12875:17040099-17040117 +
  46. scaffold_12875:18930008-18930026 +
  47. scaffold_12963:1789276-1789294 +
  48. scaffold_12970:4016898-4016916 +
  49. scaffold_12970:6585779-6585797 +
  50. scaffold_12970:9641148-9641166 +
  51. scaffold_12970:10166534-10166552 +
  52. scaffold_12970:10742567-10742585 +
  53. scaffold_13042:905385-905403 +
  54. scaffold_13042:2966220-2966238 +
  55. scaffold_13042:4249302-4249320 +
  56. scaffold_13047:5625703-5625721 +
  57. scaffold_13047:8018051-8018069 +
  58. scaffold_13047:8028527-8028545 +
  59. scaffold_13047:10036837-10036855 +
  60. scaffold_13047:12927663-12927681 +
  61. scaffold_12723:654070-654088 +
  62. scaffold_12726:752367-752385 +
  63. scaffold_12823:530985-531003 +
  64. scaffold_12823:2084593-2084611 +
  65. scaffold_12855:3879981-3879999 +
  66. scaffold_12855:4487704-4487722 +
  67. dvi_8242  scaffold_12928:360462-360480 +
  68. scaffold_12928:6366495-6366513 +
  69. scaffold_12932:1068417-1068435 +
  70. scaffold_12963:8451092-8451110 +
  71. scaffold_12963:13576117-13576135 +
  72. scaffold_12963:17885534-17885552 +
  73. scaffold_12970:4374905-4374923 +
  74. scaffold_13047:3273952-3273970 +
  75. scaffold_13047:9476930-9476948 +
  76. scaffold_13047:12328333-12328351 +
  77. scaffold_13047:19172425-19172443 +
  78. scaffold_13049:5822237-5822255 +
  79. scaffold_13049:10205101-10205119 +
  80. scaffold_13049:23656691-23656709 +
  81. scaffold_12875:2830829-2830847 +
  82. scaffold_12875:3475752-3475770 +
  83. scaffold_12875:16408511-16408529 +
  84. scaffold_12928:6933584-6933602 +
  85. scaffold_12932:956558-956576 +
  86. scaffold_12963:8603294-8603312 +
  87. scaffold_12963:13442052-13442070 +
  88. scaffold_12963:15145998-15146016 +
  89. scaffold_12970:1709540-1709558 +
  90. scaffold_12970:10236392-10236410 +
  91. scaffold_12970:10241420-10241438 +
  92. scaffold_13047:9431667-9431685 +
  93. scaffold_13047:10997358-10997376 +
  94. scaffold_13047:11230981-11230999 +
  95. scaffold_13047:18240782-18240800 +
  96. scaffold_13049:397965-397983 +
  97. scaffold_13049:14422578-14422596 +
  98. scaffold_13049:16051426-16051444 +
  99. scaffold_13049:19570873-19570891 +
  100. scaffold_13049:20220024-20220042 +
  101. scaffold_4648:4-22 +
  102. scaffold_5318:1519-1537 +
  103. scaffold_12723:3103454-3103472 +
  104. scaffold_12823:2131753-2131771 +
  105. scaffold_12823:2340601-2340619 +
  106. scaffold_12875:887151-887169 +
  107. scaffold_12875:2055961-2055979 +
  108. scaffold_12875:5956861-5956879 +
  109. scaffold_12875:14401544-14401562 +
  110. scaffold_12875:16542168-16542186 +
  111. scaffold_12928:3231325-3231343 +
  112. scaffold_12928:4306794-4306812 +
  113. scaffold_12928:5654274-5654292 +
  114. scaffold_12928:6079233-6079251 +
  115. scaffold_12963:2692165-2692183 +
  116. scaffold_12970:1393740-1393758 +
  117. scaffold_12970:10193265-10193283 +
  118. scaffold_13042:265235-265253 +
  119. scaffold_13042:3527782-3527800 +
  120. scaffold_13049:23638644-23638662 +
  121. scaffold_12822:2950587-2950605 +
  122. scaffold_12855:3215465-3215483 +
  123. scaffold_12855:8626635-8626653 +
  124. scaffold_12875:6385231-6385249 +
  125. scaffold_12875:8011105-8011123 +
  126. scaffold_12875:10042687-10042705 +
  127. scaffold_12875:16612194-16612212 +
  128. scaffold_12875:19409685-19409703 +
  129. scaffold_12928:981692-981710 +
  130. scaffold_12928:4284987-4285005 +
  131. scaffold_12963:7238467-7238485 +
  132. scaffold_12963:9363716-9363734 +
  133. scaffold_12970:9925426-9925444 +
  134. scaffold_13016:701-719 +
  135. scaffold_13047:3223382-3223400 +
  136. scaffold_13047:16070988-16071006 +
  137. scaffold_13047:17471450-17471468 +
  138. scaffold_13047:18885421-18885439 +
  139. scaffold_13049:20664098-20664116 +
  140. scaffold_13324:2895687-2895705 +
  141. scaffold_12308:7012-7030 +
  142. scaffold_12723:2175388-2175406 +
  143. scaffold_12726:588211-588229 +
  144. scaffold_12726:627825-627843 +
  145. scaffold_12822:2118752-2118770 +
  146. scaffold_12875:15494903-15494921 +
  147. scaffold_12928:2800545-2800563 +
  148. scaffold_12928:6360030-6360048 +
  149. scaffold_12928:7293238-7293256 +
  150. scaffold_12963:6664064-6664082 +
  151. scaffold_12963:9130420-9130438 +
  152. scaffold_12963:11321985-11322003 +
  153. scaffold_12970:3660440-3660458 +
  154. scaffold_12970:7505504-7505522 +
  155. scaffold_12970:8176820-8176838 +
  156. scaffold_13042:2737248-2737266 +
  157. scaffold_13047:13544335-13544353 +
  158. scaffold_13049:18414091-18414109 +
  159. scaffold_13052:1083217-1083235 +
  160. scaffold_13324:1567929-1567947 +
  161. scaffold_598:100-118 +
  162. scaffold_9476:64179-64197 +
  163. scaffold_10174:669-687 +
  164. scaffold_12815:512585-512603 +
  165. scaffold_12875:13354133-13354151 +
  166. scaffold_12875:16971900-16971918 +
  167. scaffold_12928:6529606-6529624 +
  168. scaffold_12958:573061-573079 +
  169. scaffold_12970:1324524-1324542 +
  170. scaffold_12970:1406773-1406791 +
  171. scaffold_12970:7679917-7679935 +
  172. scaffold_13047:4277817-4277835 +
  173. scaffold_13047:6626143-6626161 +
  174. scaffold_13047:8046708-8046726 +
  175. scaffold_13049:2084521-2084539 +
  176. scaffold_13049:5598556-5598574 +
  177. scaffold_13049:19660717-19660735 +
  178. scaffold_13049:22304832-22304850 +
  179. scaffold_13246:1883232-1883250 +
  180. scaffold_13324:1580500-1580518 +
  181. scaffold_12723:856517-856535 +
  182. scaffold_12723:5161657-5161675 +
  183. scaffold_12822:3172804-3172822 +
  184. scaffold_12928:1738030-1738048 +
  185. scaffold_12928:2596788-2596806 +
  186. scaffold_12928:6520061-6520079 +
  187. scaffold_12928:7657793-7657811 +
  188. scaffold_12963:4385173-4385191 +
  189. scaffold_12963:10106924-10106942 +
  190. scaffold_12963:13482550-13482568 +
  191. scaffold_12970:1273141-1273159 +
  192. scaffold_13042:2952715-2952733 +
  193. scaffold_13042:3546868-3546886 +
  194. scaffold_13047:5494017-5494035 +
  195. scaffold_13047:9960562-9960580 +
  196. scaffold_13047:10037084-10037102 +
  197. scaffold_13047:13480212-13480230 +
  198. scaffold_13047:15505263-15505281 +
  199. scaffold_13049:14715032-14715050 +
  200. scaffold_13049:15333973-15333991 +
  201. scaffold_10324:437718-437736 -
  202. scaffold_12726:2143314-2143332 -
  203. scaffold_12790:115646-115664 -
  204. scaffold_12822:1259560-1259578 -
  205. scaffold_12822:2008328-2008346 -
  206. scaffold_12823:2327086-2327104 -
  207. scaffold_12928:1410359-1410377 -
  208. scaffold_12928:6981591-6981609 -
  209. scaffold_12932:587190-587208 -
  210. scaffold_12932:1049920-1049938 -
  211. scaffold_12963:8722946-8722964 -
  212. scaffold_12963:9527133-9527151 -
  213. scaffold_12970:9723920-9723938 -
  214. scaffold_13047:1319730-1319748 -
  215. scaffold_13047:6247276-6247294 -
  216. scaffold_13047:10144807-10144825 -
  217. scaffold_13047:11109247-11109265 -
  218. scaffold_13049:961576-961594 -
  219. scaffold_13049:20972605-20972623 -
  220. scaffold_13246:1960459-1960477 -
  221. scaffold_12723:586031-586049 -
  222. scaffold_12815:141055-141073 -
  223. scaffold_12823:1000149-1000167 -
  224. scaffold_12875:10044621-10044639 -
  225. scaffold_12928:1095261-1095279 -
  226. scaffold_12928:4708115-4708133 -
  227. scaffold_12932:1769242-1769260 -
  228. scaffold_12963:16688269-16688287 -
  229. scaffold_12963:17664883-17664901 -
  230. scaffold_12970:2264568-2264586 -
  231. scaffold_12970:4565743-4565761 -
  232. scaffold_12970:5038448-5038466 -
  233. scaffold_12970:9667822-9667840 -
  234. scaffold_12970:10251996-10252014 -
  235. scaffold_13042:1243276-1243294 -
  236. scaffold_13042:1372070-1372088 -
  237. scaffold_13047:7043567-7043585 -
  238. scaffold_13047:15520783-15520801 -
  239. scaffold_13049:10038159-10038177 -
  240. scaffold_13049:10903374-10903392 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCCATGTGGAACGAGATCGCCGAACAGTTTGGCGGTCATGTGCCTACAGGTGAGTGCGACTGAGACAGCTATAATGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTTATGAGCAAAAACAAAAACATTAGCCAAGTTTCTACTGGGCTGCAAGCGCAGCCTGGCGACCGGCGTCAATTTGCTTTTGCTTTGCATTTCGCTTGTTGCTGCTCTCTTGCTCTCCCGCT
**************************************************.(((.(((.(((...(((((......)).)))...))).........((.((..((((...(((...(((..(((......)))..)))...)))...))))..))))........(((((((((....)))))))))......)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 V116
male body		 M028
head
 GSM1528803
follicle cells		 SRR1106729
mixed whole adult body
 V047
embryo
 SRR060678
9x140_testes_total
............................................................................................................................................................................TGCAAGCGCAGCCTGGCGACCTC........................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0
.CCCATGTGGAACGAGATCGCCGAA.................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...........ACGAGATCGCCGAACAGTTTG........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TTTCGCTTGTTGCTGCTCTCT............ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......GTGGAACGAGATCGCGGAT.................................................................................................................................................................................................................................. 19 2 2 0.50 1 0 0 1 0 0 0 0 0
..................................................GTGAGTGCGACTGATACC....................................................................................................................................................................................... 18 2 5 0.40 2 0 0 0 2 0 0 0 0
.....................................................................................................................................................................ACTGGGCTGCACGCGC...................................................................... 16 1 7 0.14 1 0 0 0 0 1 0 0 0
........................GAAGTATGGCGGTCATGTG................................................................................................................................................................................................................ 19 3 9 0.11 1 0 0 0 0 0 0 1 0
.....................................................AGTGGGACTGAGACAC...................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 2 0 0
.....................................................AGTGGGACTGAGACA....................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 1 0 0
.............................................................................................TGTGTGTGTGTGTGTGTGT........................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................GTGTGTGTGTGTGTGTGTGTGTGTG............................................................................................................................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 1
...........................................................................................TGTGTGTGTGTGTGTGTGTGTG.......................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

CGGGTACACCTTGCTCTAGCGGCTTGTCAAACCGCCAGTACACGGATGTCCACTCACGCTGACTCTGTCGATATTACACACACACTCACACACACACACACACACACACACACACACACACACACACATCAATACTCGTTTTTGTTTTTGTAATCGGTTCAAAGATGACCCGACGTTCGCGTCGGACCGCTGGCCGCAGTTAAACGAAAACGAAACGTAAAGCGAACAACGACGAGAGAACGAGAGGGCGA
**************************************************.(((.(((.(((...(((((......)).)))...))).........((.((..((((...(((...(((..(((......)))..)))...)))...))))..))))........(((((((((....)))))))))......)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 M027
male body		 SRR060668
160x9_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 V116
male body		 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060667
160_females_carcasses_total
 V053
head
 V047
embryo
..............................................................................................................................................................................................TGGTCGCAGTTACACGAAAAC........................................ 21 2 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................GTCGGACCGCTGGCCGCAGT................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................CGGATGTCCACTCACGCTGACTC.......................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................TCACGCTGACTCTGTCGATAT................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................TCGGTTCAAAGATGACCCGAC............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TGGTCGCAGTTACACGAAAA......................................... 20 2 2 1.00 2 0 0 0 0 0 1 1 0 0 0 0
..............................................................................................................................................................................................TGGTCGCAGTTACACGAAA.......................................... 19 2 3 1.00 3 0 0 0 0 0 1 0 1 1 0 0
..............................................................................................................................CATAAACACTCGTTTTTGGTTTT...................................................................................................... 23 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
.................................................................TATCGATATTAAACACAC........................................................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:23574730-23574980 + dvi_21144 GCCC-ATGTGGAACGAGATCGCCGAACAGTTTGGCGGTCATGTGCCTACAGGTGAGTGCGACTGAGACAGCTATA---------AT------GTGTG--------TGT--G--A--G--TG------TGTGTGTGT--GTGTGTG----TGTGTGTG--TGTGT--G-------------------------------------------------------TGTG----------T--G--TGTA------------------GTTATG--AGCAAA--------------------------------------------AAC-----------------AAAAA-----------------------------------------------------------------------CATTAGCCAAGTTTCTACTGGGC--------------------------------------------------TGC------AAGCGCAGCCTGGCGACCGGCGTCAATTT-------------------------------G----------------------------------------------------------------------------------------------CTTTTGC---------------------------------------------TT-----TGCAT-----TTCGCTT---------------------------------G--TTGCT-GCTCT------CTTG------------------CTCTCCC--GCT
droMoj3 scaffold_6680:18194057-18194298 + GCCC-ATGTGGAACGAGATCGCCGAACAGTTTGGCGGTCATGTGCCTACAGGTGAGTGCGACTGAGATAGCTATA---------CT--------------GTATATGT--A--TGTG--TGCAT------GTG--TTTGTGTGTT----TATCTTTA--T------G-------------------------------------------------------CCTG------C----GTGTA----------------------CTTACA--AGCACA--------------------------------------------AAC-----------------AAAAA-----------------------------------------------------------------------CATTAGCAAAGTTTCTACTGGGC--------------------------------------------------TCG------AAGCTTAGCCTGGCAGCCGGCTTCAATTT-------------------------------G----------------------------------------------------------------------------------------------TTTTTGT---------------------------------------------TT-----TGCGT-----TTCGC---------------------------------------TGCT-GC---------GCTC------------------TTTTCTT--TCT
droGri2 scaffold_15110:14081858-14082089 - GCCC-ATGTGGAACGAGATCGCCGAACAGTTTGGCGGGCATGTGCCTACAGGTGAGTGCAACTGAAATAGCCATACACACTCCCCTCTCTATCTCTC--------TTT--C--A--C--TC------T--------------------------CTA--TGTG-------------------------------------------------------------TG----------TGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCCAAGTTTCTAGCGGGG-------------T------------------------------------TCGCTACAAAAGCTTAGCCTGGCAGCCGGCATCGTTTT-------------------------------------T----------TTTTA-------------------------------------------------------------------------TTTTTGT---------------------------------------------TT-----TGCATTGT--CTCGCTT---------------------------------G--TTGCT-GCTCA------CTCG------------------CTCTCTT--AAT
droWil2 scf2_1100000004511:1772995-1773260 - GCCC-ATGTGGACAGAGATCGCTGAACAGTTTGGCGGTCATGTTCCTACAGGTGAGTG---------------------GT--GG----------------------------------------------------------------------------------------------GATGGGGCGGGGCGGGTCGGGGGGGATGGGTTGGTGCCTTACATATG------T----ATGTA----------------------CATAC-AT------ACGTTT-------------ACGTTAA------------------GCT----------------TC-------------------------------------------------------------AGACTTGAACGACGCTTTCGCTCGTTCTCTTTTTCTC--------------------------------------------------T-C------AATCTCTGCCTCTC----------------------------------------------------TCTGTTATCGGTTTTCGCACAATGCTT----------------TCTTATT---------------------------------------CTTTGGG---------------------------------------------CT-----TGCTT-----CTCTC------------------------------------------------TTTTGACCTTA------------------CTCTCTT--TCT
dp5 4_group3:4540112-4540309 + TGTGCC----------------------------------------TGGACATGTGTGGGTGTAAAATACATATGAGTAGC--GGTGTGTACGTGTG--------TGT--G--G--G------T------GTG--TGTGTGGG--------TGGGTG--TGTGG--G-------------------------------------------------------TGTG------T----GTGTG----------------------GGTGT-GT------GCA-------------TCT--------------------------------------------------------------------------------------------------------------------------ATTTGTAAAGTTTCTTTGCC-C-----AAACGCAAGCATT---------------------------------------------------------------------TGC--------------TGCTTTCA----CTCC----------------------------------------------------------------------------------------------TTTTTTT--------------------------------------------------TTTGCGC-----T-------------------------------CGCCCT--T---TTTCTGTATT------TTTG-----------------------GT--TTC
droPer2 scaffold_4:2554308-2554461 - ATGG-G---------------------------------------------------------------------------------------------------TGCGTG--C--A--------TGTGTGTGTGT--GTGTGTG----TGTGTGTGTGT--GTGTG---------------------------------------------------------TG----------TGTGTGACC------------------------------------------------------------------------------------------------------------------------------------------------------------CGACT---------------------------------------------------------------------------------------------------------------------CCT-------------------------------TTTGCTCTTT----------GGTGGGCA--GCGCCG----------------AACCGCGTTTTCA-----------------------------------TGTG----------------------------------------------------------------------GT----TCGCCACGTCTCGCTGGAC-----A--T--GTGAT-CCCCT------TTCG------------------CTCTCTC--CCT
droAna3 scaffold_13266:4575005-4575162 + ATAT-G---------------------------------------------------------------------------------------------------TATGTG--T--GTGAG--T------GTG--TGTGTGTGTT----AGTGTGTG--TGTG-------------------------------------------------------------TG------T----GTGTGAGC------------------------------------------------------------------------------------------------------------------------------------------------------------AGACTACAC------------------------------------------AATCAGC---------------------------------------------------------------------AACAGCAGCCGCATTTCACTTTAACAAAAC-------------------------------------------------------------------------------------------------------T--------------------------------------------------TTTTCGG-----T-------------------------------CTTTCT--T---TTTCAATATT------TTTTTTATTGTTTTTATTGTTGCTTCTTC--GCG
droBip1 scf7180000395165:4018-4200 + AATGCG---------------------------------------------------------------------------------------------------TGT--G--C--ATGCG------T--TTG--TATGCGTGTG----TGTGTGTGTGT--GTGTG---------------------------------------------------------CG----------A--A--------------------------TAC-AA------AGGCAG-------------AGGCAGA------------------CAT-----------------CACAA---CACAAAAAACCTTT-------------------------------------------------------------CAAAATTCTAGTGAGC--------------------------------------------------TAC--------ATTTCGTTTGGCACACGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAATTTCCGC--------TT-------CAT-----TACGCT--------------------------TTCTCACTCTG--C---TCGCT------TTTG------------------CTCTCTC--TCT
droKik1 scf7180000302393:75765-75943 + TGAGAA---------------------------------------------------------------------------------------------------TGA--G--T--G--------------TGTGT--GTGTGTG----TGTGCGTGTTT--GTGTG---------------------------------------------------------CG----------TGTGCA----------------------ACAACG--A-----AAA---TAAAAAAATA-------------------------------------------------A-TG---------------------------------------------------------------------------------------------------------------------------------------------------CGAAAAAAGTTTATCGCTGTAGACAG-------------------CGCTGCCGCTGCCC----TTCGTTTTTT----------TTTTAGCAAAGTAGTG----------------AATCATT------------------------------------------------------------------------------------------------------------CTCGCAT---------------------------------G--TTGTT-TCTCT------TTTT---------------GGGCTCTCTC--CCT
droFic1 scf7180000454073:2765755-2765947 - CAAGCA------------------------------------------------AATGAAATCGAGATGGAG------------AT------GTTTGCCTGGG--TGTTTG--T--G--------TGTGTGTGTAT--GTGTGTA----TGTGTGTGTGC--GTGTG---------------------------------------------------------GG----------T--G--TGTGGAA----------------CTGC-AA------CAG---------------------------------------------------GAGCAAAC--------------------------------------------------------TAAA----ACTCGC------------------------------------------AGCCGGCAACAGGAAACAAGCC--------------------AAAGAAAAGCATACTTCCGCAGGCAG-------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------------------------------------C-TCTGC------TTCG------C---TTTT----CCCGCTC--ACC
droEle1 scf7180000486474:1852799-1852956 + ACAG-A--------------------------------------------------T---------------ACT---------CT--------------GTA--TGT--G--CGAG--TGTGT------GTG--TGTGTGTGTT----CGTGCGAG--TGGC-------------------------------------------------------------AG----TG----T--G--T------------------------GC-GA------GAG-----------TG-------------------------------------------------A-GG------------------------------------------------------CGAATACGA------------------------------------------AATCACC---------------------------------------------------------------------ACTTTGCGCCGCTCTGCGAGTGGAAATCTC-----------------------------------------------------------------------------------------------------------------------------------------------------TT-----GGCTT-----TTGGTTGGT----TCG-----------------------------GCC-TCTCT------TTCT------------------CTCTCCC--TCG
droRho1 scf7180000779763:217127-217306 + CAAC----------------------------------------------------T---------------ATC---------CT--------------GTGTGTGC--G--TGAG--TGCGT------GTG--TGTGTGCGCG----CGTGTGTG--TGTG-------------------------------------------------------------TG------T----GTGTGT------------------------GT-GT------GAA-------------TCA-----A-------------------TTT-----------------GATGG---------------------------------------------------------------------CAAAAAAG--TATTTT------------------------------------------------TTATTTAACTTC-T------A-----------------GGGGTCATTTT-------------------------------GCCTTTT----------TTACTGCC--AT--------------------------------------------------------------------TTTCC--------------------------------------------------CCAGCGT-----T-------------------------------TTCCTA--C---CCAC-TCCTC------CTCG------------------CTTTTCT--ACT
droBia1 scf7180000302126:2192417-2192601 - GTGA-G---------------------------------------------------------------------------------------------------TGTGTG--T--G--------TGTGTGTGTGT--GTGTGTG----TGTGTGCGTGT--G-------------------------------------------------------------TG------TGCGT--G--TTTCTAAATGCCCTCGCACACACACACG--G------------------------ACACGAA------------------CA---------------------------------------------------------------------------------------------------------------------------------C-TCACCGCAGGAGAATAATTTACGTTTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACTCTTGGCTCACACGCTTTGCACTTGAAGTGTTCTCGGCT---------T----------------------------------------------------T-CTACC------TTTC------------------CTCCTTC--GCG
droTak1 scf7180000415873:308659-308763 - TGTGTG------------------------------------------------TG-------------------------------------------TGAG--TAT---------TGCG--T------GGG--TGTGCGTGCC----TGTGTGTG--TGTGT--G---------------------------------------------------------TG----------T--G--T------------------------AC-AA------GTGCTC-------------AAACAAC------------------AAC-----------------AAAAG---CGTAAAAC--------------------------------------------------------------------GCATTT------------------------------------------------TCATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------------------------------------------------------------ATTGCG--------------------------------------------------------------------------------A
droEug1 scf7180000409467:503834-503992 - AGTGTA---------------------------------------------------------------------------------------------------TAT--G--CGAG--TGTAT------GAG--TGTGTGTATC----TGTGTGTG--TGTG-------------------------------------------------------------TG------T----GTGTGTTGGGAA------------------GT---------CT-----------------------------------------------------------------------------------CTTG----------T-----------ATTTTATTGAA----------------------------------------ATTGAT------AT-TCTTGGCAGCAAATGCATT--------------------GGTGCCGAGCAT--------------------ATT-------------------------------A----------------------------------------------------------------------------------------------CTTTT----------------------------------------------------------------ATTATAT---------------------------------G--TTGTA-GCTGC------CTTG------------------CTGTGTC--TTT
dm3 chr3R:17415567-17415718 + GATACA------------------------------------------------AGT---------------GTA---------TT--------------GTG--TGA--------C--TG--TGTGTGTG----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TGTGTGGT-----------------------AT-GT------GC-----------------------------------------------------------------------------------CGTG----------------------TTTTTATTGAATGAAAGGCGC------------------------------------------GAAAAGC---------------------------------------------------------------------AAC--------------AACTGTCG----ATCC----------------------------------------------------------------------------------------------CATGGTA--------------------------------------------------CTTGC-------A---------------------------------------CTG--CTT-GCTCG------CCCA------------------ATCTCAT--GGC
droSim2 x:6087712-6087846 - GTGT-G---------------------------------------------------------------------------------------------------TGTGTG--T--G--------TGTGTGTGTGT--GTGTGTG----TGTGTGTGTGT--G-------------------------------------------------------------TC--TGTG----T--G--T------------------------AT-GA------GTTTTG-------------AAGAAAGCTTTCAGGCTCAGCCAAAGTT------------------A-GGCGCTGTTAGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------TTTTTGC---------------------------------------------TTTTGTTT--AT-----T-------------------------------------------------------------TT------------------GTTTGTT--GCT
droSec2 scaffold_1:13954327-13954543 + AACACA------------------------------------------------TG-------------------------------------------------TGT--CCGTCTC--GG--TGTGT--GAG--T----GTGTGGGTGTGAATGTG--TGTGT--GTGTGGGCAAGGGAAAAGGCCAAAACAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAAAGTCTGAGAAGCAACGTAGAACTTTTTTTGAG--------------------------------------GGC--------------------------------------------------TGA-------------------GAGCAA-------ATG-------------------------------GCAATTT----------A-----------------------------------------------------------------------------TAAAATCCTTTGAAGTGTCGAAAATCAGTAATTGTAGTCAAAGTGCAAATTGA----------------T---------------------------------------------TG-CCCGC------CTCG------------------CTCTCTC--TCT
droYak3 3R:26218933-26219158 - TGCGTG----------------------------------------------TGAATGAATTTTATTTGGCAACA---------AT------G------------TTTGTG--C--ATGCG--T------GTG--TGTGTGTGCC----CGTGTGTG--TGTGTGTG-------------------------------------------------------CGTGCTTGTA--------------------------------CATATG--GGTGCA--------------------------------------------AATGGATTTGATGTAAATTGC-------------------------------------------------------------AATTTTATGC------------GTATTT-------------------------------------------TCATTTCGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGCTTCTCGTCCTCCGACTTTTCCCTCTGTTTTCCCTCTGTT---------TTCCATCT-TCCT---------------------------------G--TTTCT-GTTTT------TCTG------------------CTCCCGTTACTG
droEre2 scaffold_4845:10842140-10842338 + TGAT-G---------------C------------------------T-------GGT---------------ATC---------CT--------------TTG--TGT--G--T--G------TGTGTTTGAG--T--G----------TGTGTGTG--TGTGTGTG--TGTGTT-------------------------------------------------CG----------G--G--------------------------------G-----TCA---TGTCAAGCTA-------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTCA--ACACCGTCTCATTAATCATGCTGGCCACACACTCACACAATCCTACTCGCACACAGACAACATGTGGCCTCTTTC---------------------------------------------TT-----TGTGT-----G------TCTGTG--G------------------------G--CTGCA-GC-----------------------TTTTCCCGCTTTCCC--GCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCCC-ATGTGGAACGAGATCGCCGAACAGTTTGGCGGTCATGTGCCTACAGGTGAGTGCGACTGAGACAGCTATA---------AT------GTGTG--------TGT--G--A--G--TG------TGTGTGTGT--GTGTGTG----TGTGTGTG--TGTGT--G-------------------------------------------------------TGTG----------T--G--TGTA------------------GTTATG--AGCAAA--------------------------------------------AAC-----------------AAAAA-----------------------------------------------------------------------CATTAGCCAAGTTTCTACTGGGC--------------------------------------------------TGC------AAGCGCAGCCTGGCGACCGGCGTCAATTT-------------------------------G----------------------------------------------------------------------------------------------CTTTTGC---------------------------------------------TT-----TGCAT-----TTCGCTT---------------------------------G--TTGCT-GCTCT------CTTG------------------CTCTCCC--GCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC------AAGCGCAGCCTGGCGACCTC..........................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.CCC-ATGTGGAACGAGATCGCCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
............ACGAGATCGCCGAACAGTTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----TTCGCTT---------------------------------G--TTGCT-GCTCT------CT................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TGTGT--GTGTGTG----TGTGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................G--TG------TGTGTGTGT--GTGTGTG----TGTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................TGTGTGT--GTGTGTG----TGTGTGTG--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000001
droMoj3
GCCC-ATGTGGAACGAGATCGCCGAACAGTTTGGCGGTCATGTGCCTACAGGTGAGTGCGACTGAGATAGCTATA---------CT--------------GTATATGT--A--TGTG--TGCAT------GTG--TTTGTGTGTT----TATCTTTA--T------G-------------------------------------------------------CCTG------C----GTGTA----------------------CTTACA--AGCACA--------------------------------------------AAC-----------------AAAAA-----------------------------------------------------------------------CATTAGCAAAGTTTCTACTGGGC--------------------------------------------------TCG------AAGCTTAGCCTGGCAGCCGGCTTCAATTT-------------------------------G----------------------------------------------------------------------------------------------TTTTTGT---------------------------------------------TT-----TGCGT-----TTCGC---------------------------------------TGCT-GC---------GCTC------------------TTTTCTT--TCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCCC-ATGTGGAACGAGATCGCCGAACAGTTTGGCGGGCATGTGCCTACAGGTGAGTGCAACTGAAATAGCCATACACACTCCCCTCTCTATCTCTC--------TTT--C--A--C--TC------T--------------------------CTA--TGTG-------------------------------------------------------------TG----------TGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAGCCAAGTTTCTAGCGGGG-------------T------------------------------------TCGCTACAAAAGCTTAGCCTGGCAGCCGGCATCGTTTT-------------------------------------T----------TTTTA-------------------------------------------------------------------------TTTTTGT---------------------------------------------TT-----TGCATTGT--CTCGCTT---------------------------------G--TTGCT-GCTCA------CTCG------------------CTCTCTT--AATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GCCC-ATGTGGACAGAGATCGCTGAACAGTTTGGCGGTCATGTTCCTACAGGTGAGTG---------------------GT--GG----------------------------------------------------------------------------------------------GATGGGGCGGGGCGGGTCGGGGGGGATGGGTTGGTGCCTTACATATG------T----ATGTA----------------------CATAC-AT------ACGTTT-------------ACGTTAA------------------GCT----------------TC-------------------------------------------------------------AGACTTGAACGACGCTTTCGCTCGTTCTCTTTTTCTC--------------------------------------------------T-C------AATCTCTGCCTCTC----------------------------------------------------TCTGTTATCGGTTTTCGCACAATGCTT----------------TCTTATT---------------------------------------CTTTGGG---------------------------------------------CT-----TGCTT-----CTCTC------------------------------------------------TTTTGACCTTA------------------CTCTCTT--TCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................T--GG----------------------------------------------------------------------------------------------GATGGGGCGGGGCGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201010
...............................................................................GT--GG----------------------------------------------------------------------------------------------GATGGGGCGGGGCGGGTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
...............................................................................GT--GG----------------------------------------------------------------------------------------------GATGGGGCGGGGCGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
...................................................................................................................................................................................................TCGGGGGGGATGGGTTGGTGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
...............................................................................GT--GG----------------------------------------------------------------------------------------------GATGGGGCGGGGCGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
..................................................GGTGAGTG---------------------GT--GG----------------------------------------------------------------------------------------------GATGGGGTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.33101000
dp5
TGTGCC----------------------------------------TGGACATGTGTGGGTGTAAAATACATATGAGTAGC--GGTGTGTACGTGTG--------TGT--G--G--G------T------GTG--TGTGTGGG--------TGGGTG--TGTGG--G-------------------------------------------------------TGTG------T----GTGTG----------------------GGTGT-GT------GCA-------------TCT--------------------------------------------------------------------------------------------------------------------------ATTTGTAAAGTTTCTTTGCC-C-----AAACGCAAGCATT---------------------------------------------------------------------TGC--------------TGCTTTCA----CTCC----------------------------------------------------------------------------------------------TTTTTTT--------------------------------------------------TTTGCGC-----T-------------------------------CGCCCT--T---TTTCTGTATT------TTTG-----------------------GT--TTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................TGTG--------TGT--G--G--G------T------GTG--TGTGTGGG--------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.0910100000000
................................................................................................................................................................GTGG--G-------------------------------------------------------TGTG------T----GTGTG----------------------GGTGT-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.0810000001000
..................................................................................................................................................................GG--G-------------------------------------------------------TGTG------T----GTGTG----------------------GGTGT-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000001000
droPer2
ATGG-G---------------------------------------------------------------------------------------------------TGCGTG--C--A--------TGTGTGTGTGT--GTGTGTG----TGTGTGTGTGT--GTGTG---------------------------------------------------------TG----------TGTGTGACC------------------------------------------------------------------------------------------------------------------------------------------------------------CGACT---------------------------------------------------------------------------------------------------------------------CCT-------------------------------TTTGCTCTTT----------GGTGGGCA--GCGCCG----------------AACCGCGTTTTCA-----------------------------------TGTG----------------------------------------------------------------------GT----TCGCCACGTCTCGCTGGAC-----A--T--GTGAT-CCCCT------TTCG------------------CTCTCTC--CCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
ATAT-G---------------------------------------------------------------------------------------------------TATGTG--T--GTGAG--T------GTG--TGTGTGTGTT----AGTGTGTG--TGTG-------------------------------------------------------------TG------T----GTGTGAGC------------------------------------------------------------------------------------------------------------------------------------------------------------AGACTACAC------------------------------------------AATCAGC---------------------------------------------------------------------AACAGCAGCCGCATTTCACTTTAACAAAAC-------------------------------------------------------------------------------------------------------T--------------------------------------------------TTTTCGG-----T-------------------------------CTTTCT--T---TTTCAATATT------TTTTTTATTGTTTTTATTGTTGCTTCTTC--GCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................GTGAG--T------GTG--TGTGTGTGTT----.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.071010000
.............................................................................................................TG--T--GTGAG--T------GTG--TGTGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...........................................................................................................................................TGTGTT----AGTGTGTG--TGTG-------------------------------------------------------------TG------T----G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000001
droBip1
AATGCG---------------------------------------------------------------------------------------------------TGT--G--C--ATGCG------T--TTG--TATGCGTGTG----TGTGTGTGTGT--GTGTG---------------------------------------------------------CG----------A--A--------------------------TAC-AA------AGGCAG-------------AGGCAGA------------------CAT-----------------CACAA---CACAAAAAACCTTT-------------------------------------------------------------CAAAATTCTAGTGAGC--------------------------------------------------TAC--------ATTTCGTTTGGCACACGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCAATTTCCGC--------TT-------CAT-----TACGCT--------------------------TTCTCACTCTG--C---TCGCT------TTTG------------------CTCTCTC--TCTSizeHit CountTotal NormTotal
No Reads
droKik1
TGAGAA---------------------------------------------------------------------------------------------------TGA--G--T--G--------------TGTGT--GTGTGTG----TGTGCGTGTTT--GTGTG---------------------------------------------------------CG----------TGTGCA----------------------ACAACG--A-----AAA---TAAAAAAATA-------------------------------------------------A-TG---------------------------------------------------------------------------------------------------------------------------------------------------CGAAAAAAGTTTATCGCTGTAGACAG-------------------CGCTGCCGCTGCCC----TTCGTTTTTT----------TTTTAGCAAAGTAGTG----------------AATCATT------------------------------------------------------------------------------------------------------------CTCGCAT---------------------------------G--TTGTT-TCTCT------TTTT---------------GGGCTCTCTC--CCTSizeHit CountTotal NormTotal
No Reads
droFic1
CAAGCA------------------------------------------------AATGAAATCGAGATGGAG------------AT------GTTTGCCTGGG--TGTTTG--T--G--------TGTGTGTGTAT--GTGTGTA----TGTGTGTGTGC--GTGTG---------------------------------------------------------GG----------T--G--TGTGGAA----------------CTGC-AA------CAG---------------------------------------------------GAGCAAAC--------------------------------------------------------TAAA----ACTCGC------------------------------------------AGCCGGCAACAGGAAACAAGCC--------------------AAAGAAAAGCATACTTCCGCAGGCAG-------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC---------------------------------------------C-TCTGC------TTCG------C---TTTT----CCCGCTC--ACCSizeHit CountTotal NormTotal
No Reads
droEle1
ACAG-A--------------------------------------------------T---------------ACT---------CT--------------GTA--TGT--G--CGAG--TGTGT------GTG--TGTGTGTGTT----CGTGCGAG--TGGC-------------------------------------------------------------AG----TG----T--G--T------------------------GC-GA------GAG-----------TG-------------------------------------------------A-GG------------------------------------------------------CGAATACGA------------------------------------------AATCACC---------------------------------------------------------------------ACTTTGCGCCGCTCTGCGAGTGGAAATCTC-----------------------------------------------------------------------------------------------------------------------------------------------------TT-----GGCTT-----TTGGTTGGT----TCG-----------------------------GCC-TCTCT------TTCT------------------CTCTCCC--TCGSizeHit CountTotal NormTotal
No Reads
droRho1
CAAC----------------------------------------------------T---------------ATC---------CT--------------GTGTGTGC--G--TGAG--TGCGT------GTG--TGTGTGCGCG----CGTGTGTG--TGTG-------------------------------------------------------------TG------T----GTGTGT------------------------GT-GT------GAA-------------TCA-----A-------------------TTT-----------------GATGG---------------------------------------------------------------------CAAAAAAG--TATTTT------------------------------------------------TTATTTAACTTC-T------A-----------------GGGGTCATTTT-------------------------------GCCTTTT----------TTACTGCC--AT--------------------------------------------------------------------TTTCC--------------------------------------------------CCAGCGT-----T-------------------------------TTCCTA--C---CCAC-TCCTC------CTCG------------------CTTTTCT--ACTSizeHit CountTotal NormTotal
No Reads
droBia1
GTGA-G---------------------------------------------------------------------------------------------------TGTGTG--T--G--------TGTGTGTGTGT--GTGTGTG----TGTGTGCGTGT--G-------------------------------------------------------------TG------TGCGT--G--TTTCTAAATGCCCTCGCACACACACACG--G------------------------ACACGAA------------------CA---------------------------------------------------------------------------------------------------------------------------------C-TCACCGCAGGAGAATAATTTACGTTTTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAACTCTTGGCTCACACGCTTTGCACTTGAAGTGTTCTCGGCT---------T----------------------------------------------------T-CTACC------TTTC------------------CTCCTTC--GCGSizeHit CountTotal NormTotal
No Reads
droTak1
TGTGTG------------------------------------------------TG-------------------------------------------TGAG--TAT---------TGCG--T------GGG--TGTGCGTGCC----TGTGTGTG--TGTGT--G---------------------------------------------------------TG----------T--G--T------------------------AC-AA------GTGCTC-------------AAACAAC------------------AAC-----------------AAAAG---CGTAAAAC--------------------------------------------------------------------GCATTT------------------------------------------------TCATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG----------------------------------------------------------------------ATTGCG--------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
AGTGTA---------------------------------------------------------------------------------------------------TAT--G--CGAG--TGTAT------GAG--TGTGTGTATC----TGTGTGTG--TGTG-------------------------------------------------------------TG------T----GTGTGTTGGGAA------------------GT---------CT-----------------------------------------------------------------------------------CTTG----------T-----------ATTTTATTGAA----------------------------------------ATTGAT------AT-TCTTGGCAGCAAATGCATT--------------------GGTGCCGAGCAT--------------------ATT-------------------------------A----------------------------------------------------------------------------------------------CTTTT----------------------------------------------------------------ATTATAT---------------------------------G--TTGTA-GCTGC------CTTG------------------CTGTGTC--TTTSizeHit CountTotal NormTotal
No Reads
dm3
GATACA------------------------------------------------AGT---------------GTA---------TT--------------GTG--TGA--------C--TG--TGTGTGTG----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TGTGTGGT-----------------------AT-GT------GC-----------------------------------------------------------------------------------CGTG----------------------TTTTTATTGAATGAAAGGCGC------------------------------------------GAAAAGC---------------------------------------------------------------------AAC--------------AACTGTCG----ATCC----------------------------------------------------------------------------------------------CATGGTA--------------------------------------------------CTTGC-------A---------------------------------------CTG--CTT-GCTCG------CCCA------------------ATCTCAT--GGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................T---------------GTA---------TT--------------GTG--TGA--------C--TG--TGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TA---------TT--------------GTG--TGA--------C--TG--TGTGTGTG----...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ACA------------------------------------------------AGT---------------GTA---------TT--------------GTG--TGA--------C--TG--TGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................A---------TT--------------GTG--TGA--------C--TG--TGTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGCGC------------------------------------------GAAAAGC---------------------------------------------------------------------AAC--------------AA...............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................A---------TT--------------GTG--TGA--------C--TG--TGTGTGTG----T--GTGTG--------TGTGTG--TGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC--------------AACTGTCG----ATCC----------------------------------------------------------------------------------------------CATGGTA--------------------------------------------------..........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..........................................................................A---------TT--------------GTG--TGA--------C--TG--TGTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
....................................................................................................GTG--TGA--------C--TG--TGTGTGTG----T--GTGTG--------TGTGTG--TGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TACA------------------------------------------------AGT---------------GTA---------TT--------------GTG--TGA--------C--TG--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................TG--TGTGTGTG---------------------------------------------------------TG----------TGTGTGGT-----------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000
.............................................................................................................................................TG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.601200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012
..................................................................................................................................G----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000002000000000000000000200000
.....................................................................................................TG--TGA--------C--TG--TGTGTGTG----T--GTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000
............................................................................................................................................GTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000003000
.................................................................................................................................TG----T--GTGTG--------TGTGTG--TGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000
.......................................................................................................................................T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000
.................................................................................................................................TG----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000
............................................................................................................................................GTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000
.................................................................................................................................TG----T--GTGTG--------TGTGTG--TGTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300
...........................................................................................................................................TGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................C--TG--TGTGTGTG----T--GTGTG--------TGTGTG--TG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000200000000000
.........................................................................................................TGA--------C--TG--TGTGTGTG----T--GTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................TGTG--TGTGTGTG---------------------------------------------------------TG----------TGTGTGGT-----------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
...........................................................................................................................TGTGTGTG----T--GTGTG--------TGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................G--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TGTGTGGT-----------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000
.............................................................................................................................TGTGTG----T--GTGTG--------TGTGTG--TGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................TGTGTGTG---------------------------------------------------------TG----------TGTGTGGT-----------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000
................................................................................................................................GTG----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
............................................................................................................................................................G--TGTGTGTG---------------------------------------------------------TG----------TGTGTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000
..........................................................................................................GA--------C--TG--TGTGTGTG----T--GTGTG--------TGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................A--------C--TG--TGTGTGTG----T--GTGTG--------TGTGTG--TGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................G--TGA--------C--TG--TGTGTGTG----T--GTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
......................................................................................................G--TGA--------C--TG--TGTGTGTG----T--GTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................A--------C--TG--TGTGTGTG----T--GTGTG--------TGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................C--TG--TGTGTGTG----T--GTGTG--------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TGTGTG----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TGTGTGGT-----------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................TG--TGTGTGTG----T--GTGTG--------TGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................G--TGTGTGTG---------------------------------------------------------TG----------TGTGTGGT-----------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.......................................................................................................................TG--TGTGTGTG----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................35200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...........................................................................................................................TGTGTGTG----T--GTGTG--------TGTGTG--TGTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................A--------C--TG--TGTGTGTG----T--GTGTG--------TGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...........................................................................................................................TGTGTGTG----T--GTGTG--------TGTGTG--TGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................................G--TGTGTGTG---------------------------------------------------------TG----------TGTGTGGT-----------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................GTGTG--TGTGTGTG---------------------------------------------------------TG----------TGTGTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................TGTG--TGTGTGTG---------------------------------------------------------TG----------TGTGTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................TGTGTG----T--GTGTG--------TGTGTG--TGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...........................................................................................................A--------C--TG--TGTGTGTG----T--GTGTG--------TG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................A--------C--TG--TGTGTGTG----T--GTGTG--------TGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................................................................GTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TGTGTGGT-----------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................G----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................TG----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................C--TG--TGTGTGTG----T--GTGTG--------TGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................GTG----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...............................................................................................................................TGTG----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................GTG----T--GTGTG--------TGTGTG--TGTGTGTG---------------------------------------------------------TG----------TG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................G--TGTGTGTG----T--GTGTG--------TGTGTG--TGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................TGA--------C--TG--TGTGTGTG----T--GTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................A--------C--TG--TGTGTGTG----T--GTGTG--------TGTGTG--...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................TGTG----T--GTGTG--------TGTGTG--TGTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTGT-G---------------------------------------------------------------------------------------------------TGTGTG--T--G--------TGTGTGTGTGT--GTGTGTG----TGTGTGTGTGT--G-------------------------------------------------------------TC--TGTG----T--G--T------------------------AT-GA------GTTTTG-------------AAGAAAGCTTTCAGGCTCAGCCAAAGTT------------------A-GGCGCTGTTAGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------TTTTTGC---------------------------------------------TTTTGTTT--AT-----T-------------------------------------------------------------TT------------------GTTTGTT--GCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................AAGAAAGCTTTCAGGCTCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...T-G---------------------------------------------------------------------------------------------------TGTGTG--T--G--------TGTGTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000000100000
droSec2
AACACA------------------------------------------------TG-------------------------------------------------TGT--CCGTCTC--GG--TGTGT--GAG--T----GTGTGGGTGTGAATGTG--TGTGT--GTGTGGGCAAGGGAAAAGGCCAAAACAAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAAAGTCTGAGAAGCAACGTAGAACTTTTTTTGAG--------------------------------------GGC--------------------------------------------------TGA-------------------GAGCAA-------ATG-------------------------------GCAATTT----------A-----------------------------------------------------------------------------TAAAATCCTTTGAAGTGTCGAAAATCAGTAATTGTAGTCAAAGTGCAAATTGA----------------T---------------------------------------------TG-CCCGC------CTCG------------------CTCTCTC--TCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TGCGTG----------------------------------------------TGAATGAATTTTATTTGGCAACA---------AT------G------------TTTGTG--C--ATGCG--T------GTG--TGTGTGTGCC----CGTGTGTG--TGTGTGTG-------------------------------------------------------CGTGCTTGTA--------------------------------CATATG--GGTGCA--------------------------------------------AATGGATTTGATGTAAATTGC-------------------------------------------------------------AATTTTATGC------------GTATTT-------------------------------------------TCATTTCGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGCTTCTCGTCCTCCGACTTTTCCCTCTGTTTTCCCTCTGTT---------TTCCATCT-TCCT---------------------------------G--TTTCT-GTTTT------TCTG------------------CTCCCGTTACTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TGAT-G---------------C------------------------T-------GGT---------------ATC---------CT--------------TTG--TGT--G--T--G------TGTGTTTGAG--T--G----------TGTGTGTG--TGTGTGTG--TGTGTT-------------------------------------------------CG----------G--G--------------------------------G-----TCA---TGTCAAGCTA-------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTCA--ACACCGTCTCATTAATCATGCTGGCCACACACTCACACAATCCTACTCGCACACAGACAACATGTGGCCTCTTTC---------------------------------------------TT-----TGTGT-----G------TCTGTG--G------------------------G--CTGCA-GC-----------------------TTTTCCCGCTTTCCC--GCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/16/2015 at 09:01 PM