ID:

dvi_21042

 Coordinate:

scaffold_13049:22881378-22881528 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dvir_GLEANR_11376:1]; CDS [Dvir\GJ11329-cds]; intron [Dvir\GJ11329-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAAGAATCCAAACATGCTTGCATCAGTTACGAGGATGCAGTCAAACGTGGTAAGTGTTAACCTTCAACACCTGAGTACAACACTGCCAGTTCTGCAGACCACAAAGGAATGAAGGGAAAAATGGGTCATACGAGTACACATAAGGTTCTAGAACAAAAACAATAATAGTATGCACCAACACAGGTGTAATTGCGCTTTATCGATTCTCTTATTGTTTCCACTCTATTTCCATGCTTTTTTTATTGTTGCC
**************************************************....(((((..((((((...(((..((......((((.......))))...))..)))..))))))........((((((((.............(((....))).............))))).))))))))((((((....))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060684
140x9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060683
160_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 V047
embryo
 SRR060654
160x9_ovaries_total
 V053
head
 SRR060663
160_0-2h_embryos_total
 GSM1528803
follicle cells
......................................................................................................................................................................................................................GTTTCCACTCTATTTCCATGCT............... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ACAAAAGGTTCTAGGACAA.............................................................................................. 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................CAGTTACGAGGATGCAGTC................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.AAAGAATCCAAACATGCTTGCAT................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........CAAACATGCTTGCATCAGTTACGAGGAT...................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........................CAGTTACGAGGATGCAGT................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................AGTTACGAGGATGCAGTA................................................................................................................................................................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................ACACAGCCAGCTCTGCAGAGC...................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................TCCTAGTGTTTCCATTCTATT....................... 21 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................TCATACGAATACACATGAGA......................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0
.............................AAGAGAATACAGTCAAACGT.......................................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0
.................................................GGTACGTGTTAAACTTCGA....................................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................CTCTTATTGTTTCCAT............................. 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
................................AGGCTGTATTCAAACGTG......................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
.................................................CGTAAGGGTTAAACTTCAA....................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TTTTCTTAGGTTTGTACGAACGTAGTCAATGCTCCTACGTCAGTTTGCACCATTCACAATTGGAAGTTGTGGACTCATGTTGTGACGGTCAAGACGTCTGGTGTTTCCTTACTTCCCTTTTTACCCAGTATGCTCATGTGTATTCCAAGATCTTGTTTTTGTTATTATCATACGTGGTTGTGTCCACATTAACGCGAAATAGCTAAGAGAATAACAAAGGTGAGATAAAGGTACGAAAAAAATAACAACGG
**************************************************....(((((..((((((...(((..((......((((.......))))...))..)))..))))))........((((((((.............(((....))).............))))).))))))))((((((....))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 GSM1528803
follicle cells		 SRR060670
9_testes_total
 M047
female body
 V116
male body		 M028
head
 SRR060664
9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060655
9x160_testes_total
 SRR060666
160_males_carcasses_total
..................................................................................................................CCCTTTTTACGCAGTAAGCT..................................................................................................................... 20 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................CGGTCAAGACGTCTGGTGTT.................................................................................................................................................. 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................CGTCAGTTTGCACCATTCAC.................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................TGGTGTCATGTTGTGACGGT.................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................CTACGTCAGTTTGCACCA....................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................TGTGGGCTCTTGGTGTGACGGT.................................................................................................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTGTCTCATGTTGTGACGGT.................................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGGTCCCATGGTGTGACGGT.................................................................................................................................................................. 20 3 4 0.75 3 0 0 0 0 3 0 0 0 0 0 0 0
.....................................................................TGGTCTCTTGTTGTGACGGT.................................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGGGGTTTCCTTAGTTCCCT..................................................................................................................................... 20 3 5 0.40 2 0 0 0 1 0 0 1 0 0 0 0 0
...................................................................................................GGGGTTTCCTTAGTTCCCTA.................................................................................................................................... 20 3 6 0.33 2 0 0 0 0 0 0 0 1 0 1 0 0
.....................................................................TGGTCTCATGGTGTGAGGGT.................................................................................................................................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGGTCACATGGTGTGACGGT.................................................................................................................................................................. 20 3 10 0.20 2 0 0 0 0 2 0 0 0 0 0 0 0
............................................................TGGAAGTGGTGGGCGCATG............................................................................................................................................................................ 19 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................TGGGCGCTTGTTGTGACGGT.................................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGTTCTCATGGTGTGACGGT.................................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGGTCTAATGCTGTGACGGT.................................................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................GCTGTCAATGCTACTACGTC.................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................TGGGCTAATTTTGTGACGGT.................................................................................................................................................................. 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGGACGCCTGTTGAGACGGT.................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................TGGACACTTGGTGTGACGGT.................................................................................................................................................................. 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................AGGGGTTTCCTTAGTTCCC...................................................................................................................................... 19 3 16 0.13 2 0 0 0 0 0 0 0 0 0 0 0 2
....................................................................TTGGTCTCTTGTTGTGACGGT.................................................................................................................................................................. 21 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TGGCCGCTTGTTGTGACGGT.................................................................................................................................................................. 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GGGTTTCCTTAGTTCCC...................................................................................................................................... 17 2 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................CGGTCAAGACGACTGGTTTTT................................................................................................................................................. 21 2 14 0.07 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................GTCCTCATGGTGTGACGGT.................................................................................................................................................................. 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TCAAGACGCATGGTTTTTCC............................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................GTCAAGACGACTGGTTTTT................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:22881328-22881578 - dvi_21042 -------------AAAAGAATCCAAACATGCT---TGCATCAGTTACGAGGATGCAGTCAAACGTGGTAAGTG----------TTAA--C--CTTCAACACC-----------------------TGAGTA------------------------------------------------CAACAC-------------TGCCAGTTCTGCAGACCACAAAGGAATGAAG-GGAAAAATGGGTCAT---A-----------------------CG-----AGTAC---ACATAAG-GTTCTA--------------------------------G---------AACAA------AAACAATA---ATAG-----------------------------------TAT--------GCACCAA---CACAGGTGTAATTGCGCT-TTATCGA------TTC-TCTTA--TTG-----TTTCCA-----------------------------------CT---------CTATTT-CCATGCTTTTTTTAT-------------TG-----------------------------------------TTG-CC
droMoj3 scaffold_6680:17496222-17496465 - -------------AAAAGAATCTAAACATGCT---TGCATCAGTTACGAGGATGCAGTCAAACGTGGTAAGTG----------TTAA--C--CTCGAATACACATAAGGACAGGTGCTATC---------------------------------------------------------------------------TGAATTGC------AGACAACAAAAC----ATG-GGGAAAATGGGTCATTCAA-----------------------GT-----ACTTA--------AG-GCTCTA--------------------------------G---------AACAA------AAACAATA---ATAA-----------------------------------TGG--------ACACCAA---TACAGTTATAATTACAC---TATCGA------TTC-CATTG--TGGT-----TTCCA-----------------------------------CT---------ATACTT-CCATGCTTTT---AT-------------TG-----------------------------------------TTGCAC
droGri2 scaffold_15110:18155608-18155830 - -------------AAAAGAATCCAAACACGCT---TGCATCAGTTATGAGGAGGCAGTCAAACGTGGTAAGTG----------CTAA--C--CTTCAAA-----------------------------------TCC-CA----------------------------------CAGCAAGG-------------------------------CAACA--------AAA-ACGAAAATGGGTCAT--TCGA----------------GTGTACA-------------ACATAAG-GTTCTA--------------------------------G---------AAGAAAAA------CAATA---ATAG-----------------------------------T-----ATAATGCACCAA---CACAGGTGTAATTGCGCT-TTATCGA------TTC-TGTTG--TTG-----TTTTCA-----------------------------------TT---------CTATTCCCCATGCTTT----------------------------------------------------------------T-AT
droWil2 scf2_1100000004540:539829-540150 - -------------AAAAGAGTCTAAACACGCC---TGCATAAGTTACGAGGATGCAGTCAAACGTGGTAAGTAACCACTTGGGTTAA--C--CTTCATTACA------------------------------------------------------T-------------TG---------------------------GT--C---------------------------ACAAAATGGGTCAT--CACGGTTCTCTGCGGCCGTCGTCTACG-------------ACGTCAGAGTTCTAGAATCCGCAGCAAGAAG-G-CACTAGTACCAGCAGCACAGGGCAAAGCAACAAAAACAATT---ATACATGTGTGCACGCGTGCGTTTGTCTGTGTGTGTGTGT--------GCATACCAA---TACAGGTGTAA-TGCGCT-TTATCGA------TTC-TATTGTGTTCTTA--TTCCCA-----------------------------------AT---------CTATTT-CCATTTCCAT---GC------------GTG-----------------------------------------T----T
dp5 XR_group6:11827336-11827599 - dps_3161 -------------AAAGGAGTCGAAACATGCC---TGCATCAGCTACGAGGATGCAGTCAAACGTAGTAAGTGA---------TTAA--C--CTTCAAAGCCTGTTAGTGTTGGCTCCATC---------------------------------AAT-------------TGACCAGCACAGCACCTTCCGCGCTGGCCGCCAC---------------------------TTAAAATGGGTCAC--TA-----------------------CGACACGAATCG---ACGTCA--GTTCTGGAAGCC--------------------------T---------AAAAACAA---AAACAATT---CTAC-----------------------------------T--------GCCCACCAA---CACAGGTGTAACTGCGCC-TTATCGA------TTC-TATTG--TTG---TGCTCCCA-----------------------------------TT---------CTACCT-CCATG-----------------------------------------------------------------------C
droPer2 scaffold_20:1748961-1749224 - -------------AAAGGAGTCGAAACATGCC---TGCATCAGCTACGAGGATGCAGTCAAACGTAGTAAGTGA---------TTAA--C--CTTCAAAGCCTGTTAGTGTTGGCTCCATC---------------------------------AAT-------------TGACCAGCACAGCACCTTCCGCGCTGGCCGCCAC---------------------------TTAAAATGGGTCAC--TA-----------------------CGACACGAATCG---ACGTCA--GTTCTGGAAGCC--------------------------T---------AAAAACAA---AAACAATT---CTAC-----------------------------------T--------GCCCACCAA---CACAGGTGTAACTGCGCC-TTATCGA------TTC-TATTG--TTG---TGCTCCCA-----------------------------------TT---------CTACCT-CCATG-----------------------------------------------------------------------C
droAna3 scaffold_13337:19407393-19407666 - -------------CAAGGAGTCCAAGCACGCT---TGCATCAGCTACGAGGATGCCGTTAAGCGAGGTGAGC------------TCTCC---------------------------------GGACGGAGACCAAGTGTC-GA-TGGA-AGTGAAAA-------------TGAC---------------------------CG----------------------------TGGAAATGGGTCAC--TG-----------------------CT-----AATCA---ACGCAA--CTT---GACCAA--------------------------T---------AAAAACAA---------CA---ACAA-----------------------------------TGCT-CACAGAACACCAA---CACAGGTGTGATTGCGCT-TTATCGA------TTC-CATTG--TTG---TGCTTCCACAAATTCTAATTGACACCAGTG-------GCCACCACTCGTTCCAACTACTC-CCAAACCCCT---GC-------------CG-----------------------------------------T----T
droBip1 scf7180000396360:602184-602411 - -------------CAAGGAGTCCAAGCACGCT---TGCATCAGCTACGAGGATGCCGTTAAGCGAGGTGAGC------------TCTCC---------------------------------GGACGGGCA---ACTGTC-GA-TGGA-AGAGAAAA-------------TGAC---------------------------CG----------------------------TGGAAATGGGTCAC--TG-----------------------CT-----AATCA---ACGCAA--CTT---GACCAA--------------------------T---------AAAAACAA---------CA---ACAA-----------------------------------TGGGCCCCAGAACACCAA---CACAGGTGTGATTGCGCT-TTATCGA------TTC-CATTG--TTG---TGCTTCCACAAATTCTAAT----------------------------------------------------------------------TG-----------------------------------------T-C-AC
droKik1 scf7180000302391:632268-632535 - AAAAGATGGGCACCAAGGAGTCCAAGCACTCAAACAGCATCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTG----------TGCTGC----CC------------------------CCTGGCTGGACC--AAA----------------------TTCCC-----------TGG----------------------GA--------------------------AA-GTGAAAATGGGTCACACAG-----------------------CT-----AATCAACGACGTCG--CTTCTA-------------GAAA-A-CAGAA----------------------CAA---------CACC---AA-----------------------------------CAT---AC---------AT---ACAGGTGTGATTGCGCT-TTATCGA------TTCCCATTG--TTGTTGTGCTCTCACGTTTGCTGAC------CACTACACCCTGGACACAAG---------GTGG---------TT---CCAC-------------TG-------------------------------------------C-CC
droFic1 scf7180000454113:2454503-2454751 - -------------CAAGGAGTCGAAACACTCCAATAGCATCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTT----------TTAA--CTGCCTCAA--------------------------------A---TTT-TG-GA-TGGTA--------ACACCCTCCGG--T---------------------------GACTGC---------------------------GGAAAATGGGTCACTCTG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAACCCCC-GC---------AATAGCAA---------CAGCAACAA-----------------------------------C----------------AAACCGCAGGTGTGATTGCGCTGCAATCGA------TTC-CATTG--TTGTTG--CTTCCACGATTTCTGCC------CAGTG-------G-----------------------------TTCCTATAC-------------TGACCA-----------------------------------------CC
droEle1 scf7180000491193:4130361-4130565 + -------------CAAGGAGTCCAAGCACTCCAATAGCATCAGCTATGAGGATTCGGTGAAGCGCGGTGAGTGAG--------TCCTCC---------------------------------GGATGGGTA---TTT-TG-GA-TAGTA--------ACACCC-CCGGTG-----------------------------GCC-------------------------AG-TGGAAAATGGAGTAC--TA-----------------------CT-----AATCA-----------------------------AGCAA-A-CAAAATCCCC--------------------------------------------------------------------------------------------------ACT-----------GCAATCGA------TTC-CATTG--TTGTTG--CTCATACGATTTCTGAC------CAGTG-------C-----------------------------CTCCTCCAC-------------TG-----------------------------------------------
droRho1 scf7180000773422:74500-74711 - -------------CAAGGAGTCCAAACACTCCAATAGCATAAGCTACGAGGATTCGGTAAAGCGCGGTAAGTGAA--------TTCTCC---------------------------------GGATGGGTA---TTT-TG-GGTTGGTA--------ATATAC-CCGGTG-----------------------------GCG-------------------------AG-TGGAAAATGGGTTAC--GG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAAACCCC--------------------------------------------------------------------------------------------------GCT-----------GCAATCGA------TTC-CATTG--TTATTG--GTCGCACCATTTCTGAC------GAAAG-------T-----------------------------TTTCCCCAC-------------TGACCA-----------------------------------------CC
droBia1 scf7180000302193:5818404-5818684 - -------------CAAGGAGTCCAAGCACTCCAATAGCATCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTG----------TCCTCC---------------------------------GCTCGG-AA---TTT-TC-GTGTGCCA--------GTGCCC-CCCGTC----------------------------GGA--------------------------AG-TGGAAAATGGGTCAC--TG-----------------------CT-----AATCA-----------------------------AGAAACA-CAGAGAACCCCGC---------ACAAGCAA---------CAAC----------------------------------------------AC---------GG---GCAGGT-----------GCAATCGA------TTC-CATTG--TTGTTG--CGCCCACGACTTCTGAC------CAGTG-------G-----------------------------CTCCCGCACCACCCCCGCT-CCTGACCACCACCCTCTGCTC---CTCCACAACCTGCAATTGAAATTC-CC
droTak1 scf7180000415254:716685-716927 - -------------CAAGGAGTCCAAACACTCCAATAGCATCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTG----------TCCTCC----C----------------------------AATTGG-AA---TTT-TGT--------------------------------------------------------------------------------------AG-TGGAAAATGGGTCAC--TG-----------------------CT-----AATCA-----------------------------CGAAA-AGCAGAACCCCC-GC---------AGAAGCAA---------CACCAACAA-----------------------------------C-----AC---------AG---GCAGGT-----------GCAATCGATTCCGATTC-CATTG--TTGTTG--CG-------CTTCTGAC------CAGCG-------G-----------------------------TTCCCCCGC---------CCCCTGACCCA------CTGCTC---CTACTGATCCTGG-------ATTT-CC
droEug1 scf7180000409466:5084005-5084247 - -------------CAAGGAGTCCAAGCACTCCAATAGCATCAGCTATGAGGATTCAGTGAAGCGCGGTGAGTG----------TCCACG---------------------------------GGCTCGAAA---TTT-TT-GATTGTT---------ATTCCCTGCTGTA-----------------------------GGC-------------------------ATTGGGAAAATGGGTAAC--TG-----------------------CT-----AATCA-----------------------------AGAAA-AAGAGAACCCCC--G---------AAAAGCAA---------CAGCAACAA-----------------------------------C-----AA---------AA---GCAGGT-----------GCAATCGA------TTC-AATTT--GTG--------------------TC------CAGTG-------A-----------------------------TTATTCCAC------------CTGACCAACACCATCTTCTCTCTCTC------------------TTT-CC
dm3 chr3L:19864502-19864717 + -------------CAAGGAGTCCAAGCACTCCAATAGCGTCAGCTACGAGGATTCGGTGAAACGCGGTGAGTC----------TCCTCC---------------------------------GGCTGGTTA---CTTG--T---G------------GGG-------------C----------------CGTCTCCCAGCCGC---------------------------AGAAAATAGGTCAC--TG-----------------------CC-----AATCA-----------------------------AGAAA-A-CAGAACCCCCTGC---------GAAAGCAA---------CAAC---AA-----------------------------------CGT---AC---------AA---GCAGGT-----------GCAATCGA------TTC-CATTGTGTTGTTG--CGCCCACGTCTTCTGAC------CAACG-------G---------------------------------------------------------------------------------------------------G
droSim2 3l:19458456-19458671 + dsi_12627 -------------CAAGGAGTCCAAGCACTCCAATAGCGTCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTC----------TCCTCC---------------------------------GGCTGGTTA---CTTG--T---G------------GGG-------------C----------------CGTCTCCCAGCCGC---------------------------TGAAAATAGGTCAC--TG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAACCCCCTGC---------GAAAGCAA---------CAAC---AA-----------------------------------CGT---AC---------AA---GCAGGT-----------GCAATCGA------TTC-CATTGTGTTGTTG--CGCCCACGTCTTCTGAC------CAACG-------G---------------------------------------------------------------------------------------------------G
droSec2 scaffold_29:509932-510147 + -------------CAAGGAGTCCAAGCACTCCAATAGCGTCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTC----------TCCTCC---------------------------------GGCTGGTTA---CTTG--T---G------------GGG-------------C----------------CGTCTCCCAGCCGC---------------------------AGAAAATAGGTCAC--TG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAACCCCCTGC---------GAGAGCAA---------CAAC---AA-----------------------------------CGT---AC---------AA---GCAGGT-----------GCAATCGA------TTC-CATTGTGTTGTTG--CGCCCACGTCTTCTGAC------CAACG-------G---------------------------------------------------------------------------------------------------G
droYak3 3L:20716955-20717183 - -------------CAAGGAGTCCAAGCACTCCAATAGCGTCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTC----------TCCTCC---------------------------------GGCTGGTTA---CTAG--TACTT------------GTA-------------C----------------CGTCTCACAGCCGC---------------------------AGAAAATAGGTCAC--TG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAACCCCCTGC---------AACAGCAA---------CAACCACAA-----------------------------------CTT---TC---------AA---GCAGGT-----------GCAATCGA------TTC-CATTGTGTTGTTG--CGCCCAAGTCTGCAGAC------CAAAT------AT-----------------------------AT---------------------------------------------------------------TTT-CC
droEre2 scaffold_4784:19602693-19602935 + -------------CAAGGAGTCCAAACACTCCAATAGCGTCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTC----------TCCTCC---------------------------------GGCTGGCTA---CTTG--TACTT------------GTA-------------C----------------CGTCGTACAGCCGC---------------------------AGAAAATAGGTCAC--TG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAACCCCCTCC---------AAAAGCAA---------CAACAACAA-----------------------------------CTT---AC---------AA---GCAGGT-----------GCAATCGA------TTC-CATTGTGTTGCTG--CGCCCACGTCTGCTGAC------CAACT------GG-----------------------------ATTCTCCAC-------------TGACCAC------------------------------------CAG-CC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
-------------AAAAGAATCCAAACATGCT---TGCATCAGTTACGAGGATGCAGTCAAACGTGGTAAGTG----------TTAA--C--CTTCAACACC-----------------------TGAGTA------------------------------------------------CAACAC-------------TGCCAGTTCTGCAGACCACAAAGGAATGAAG-GGAAAAATGGGTCAT---A-----------------------CG-----AGTAC---ACATAAG-GTTCTA--------------------------------G---------AACAA------AAACAATA---ATAG-----------------------------------TAT--------GCACCAA---CACAGGTGTAATTGCGCT-TTATCGA------TTC-TCTTA--TTG-----TTTCCA-----------------------------------CT---------CTATTT-CCATGCTTTTTTTAT-------------TG-----------------------------------------TTG-CCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----TTTCCA-----------------------------------CT---------CTATTT-CCATGCT......................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
........................................CAGTTACGAGGATGCAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
..............AAAGAATCCAAACATGCT---TGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000010000000000000000000000000000
......................CAAACATGCT---TGCATCAGTTACGAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000100000000000000000000000000
........................................CAGTTACGAGGATGCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000100000000000000000000000000000
.........................................AGTTACGAGGATGCAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TCTTA--TTG-----TTTCCA-----------------------------------T..............................................................................................16200.051000000000000000000000000000000000000000000000000000000000000001
droMoj3
-------------AAAAGAATCTAAACATGCT---TGCATCAGTTACGAGGATGCAGTCAAACGTGGTAAGTG----------TTAA--C--CTCGAATACACATAAGGACAGGTGCTATC---------------------------------------------------------------------------TGAATTGC------AGACAACAAAAC----ATG-GGGAAAATGGGTCATTCAA-----------------------GT-----ACTTA--------AG-GCTCTA--------------------------------G---------AACAA------AAACAATA---ATAA-----------------------------------TGG--------ACACCAA---TACAGTTATAATTACAC---TATCGA------TTC-CATTG--TGGT-----TTCCA-----------------------------------CT---------ATACTT-CCATGCTTTT---AT-------------TG-----------------------------------------TTGCACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................CTAAACATGCT---TGCATCAGTTACGAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
droGri2
-------------AAAAGAATCCAAACACGCT---TGCATCAGTTATGAGGAGGCAGTCAAACGTGGTAAGTG----------CTAA--C--CTTCAAA-----------------------------------TCC-CA----------------------------------CAGCAAGG-------------------------------CAACA--------AAA-ACGAAAATGGGTCAT--TCGA----------------GTGTACA-------------ACATAAG-GTTCTA--------------------------------G---------AAGAAAAA------CAATA---ATAG-----------------------------------T-----ATAATGCACCAA---CACAGGTGTAATTGCGCT-TTATCGA------TTC-TGTTG--TTG-----TTTTCA-----------------------------------TT---------CTATTCCCCATGCTTT----------------------------------------------------------------T-ATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................GCATCAGTTATGAGGAGGCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
droWil2
-------------AAAAGAGTCTAAACACGCC---TGCATAAGTTACGAGGATGCAGTCAAACGTGGTAAGTAACCACTTGGGTTAA--C--CTTCATTACA------------------------------------------------------T-------------TG---------------------------GT--C---------------------------ACAAAATGGGTCAT--CACGGTTCTCTGCGGCCGTCGTCTACG-------------ACGTCAGAGTTCTAGAATCCGCAGCAAGAAG-G-CACTAGTACCAGCAGCACAGGGCAAAGCAACAAAAACAATT---ATACATGTGTGCACGCGTGCGTTTGTCTGTGTGTGTGTGT--------GCATACCAA---TACAGGTGTAA-TGCGCT-TTATCGA------TTC-TATTGTGTTCTTA--TTCCCA-----------------------------------AT---------CTATTT-CCATTTCCAT---GC------------GTG-----------------------------------------T----TSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................ATAAGTTACGAGGATGCAGTCAAACGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00301110
.............AAAAGAGTCTAAACACGCC---TGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200110
..............................................................................................................................................................................................................................................GGGTCAT--CACGGTTCTCTGCGGCCG...........................................................................................................................................................................................................................................................................................................................................................2512.00200002
..........................CACGCC---TGCATAAGTTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
...............................................GAGGATGCAGTCAAACGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
......................................ATAAGTTACGAGGATGCAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
................AGAGTCTAAACACGCC---TGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGA------TTC-TATTGTGTTCTTA--TTCCC...................................................................................................................................2611.00101000
............................................TACGAGGATGCAGTCAAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
dp5
-------------AAAGGAGTCGAAACATGCC---TGCATCAGCTACGAGGATGCAGTCAAACGTAGTAAGTGA---------TTAA--C--CTTCAAAGCCTGTTAGTGTTGGCTCCATC---------------------------------AAT-------------TGACCAGCACAGCACCTTCCGCGCTGGCCGCCAC---------------------------TTAAAATGGGTCAC--TA-----------------------CGACACGAATCG---ACGTCA--GTTCTGGAAGCC--------------------------T---------AAAAACAA---AAACAATT---CTAC-----------------------------------T--------GCCCACCAA---CACAGGTGTAACTGCGCC-TTATCGA------TTC-TATTG--TTG---TGCTCCCA-----------------------------------TT---------CTACCT-CCATG-----------------------------------------------------------------------CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................CAGCTACGAGGATGCAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020100100000
..................................................................GTAAGTGA---------TTAA--C--CTTCAAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
.....................................CATCAGCTACGAGGATGCAGTCAAACGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.......................................TCAGCTACGAGGATGCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
......................................ATCAGCTACGAGGATGCAGTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
.......................................TCAGCTACGAGGATGCAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................ATCAGCTACGAGGATGCAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
............................................TACGAGGATGCAGTCAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
-------------AAAGGAGTCGAAACATGCC---TGCATCAGCTACGAGGATGCAGTCAAACGTAGTAAGTGA---------TTAA--C--CTTCAAAGCCTGTTAGTGTTGGCTCCATC---------------------------------AAT-------------TGACCAGCACAGCACCTTCCGCGCTGGCCGCCAC---------------------------TTAAAATGGGTCAC--TA-----------------------CGACACGAATCG---ACGTCA--GTTCTGGAAGCC--------------------------T---------AAAAACAA---AAACAATT---CTAC-----------------------------------T--------GCCCACCAA---CACAGGTGTAACTGCGCC-TTATCGA------TTC-TATTG--TTG---TGCTCCCA-----------------------------------TT---------CTACCT-CCATG-----------------------------------------------------------------------CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................ATCG---ACGTCA--GTTCTGGAAGCC--------------------------T---------.............................................................................................................................................................................................................................................................................2311.001100000
........................................CAGCTACGAGGATGCAGTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
........................................................................................................................................................................................................................................................A-----------------------CGACACGAATCG---ACGTCA--G............................................................................................................................................................................................................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................CG---ACGTCA--GTTCTGGAAGCC--------------------------T---------.............................................................................................................................................................................................................................................................................2111.001100000
............................................................................................................................................................T-------------TGACCAGCACAGCACCTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------T--------GCCCACCAA---CACAGGTGTAACTGC............................................................................................................................................................................2611.001001000
...........................ATGCC---TGCATCAGCTACGAGGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000
droAna3
-------------CAAGGAGTCCAAGCACGCT---TGCATCAGCTACGAGGATGCCGTTAAGCGAGGTGAGC------------TCTCC---------------------------------GGACGGAGACCAAGTGTC-GA-TGGA-AGTGAAAA-------------TGAC---------------------------CG----------------------------TGGAAATGGGTCAC--TG-----------------------CT-----AATCA---ACGCAA--CTT---GACCAA--------------------------T---------AAAAACAA---------CA---ACAA-----------------------------------TGCT-CACAGAACACCAA---CACAGGTGTGATTGCGCT-TTATCGA------TTC-CATTG--TTG---TGCTTCCACAAATTCTAATTGACACCAGTG-------GCCACCACTCGTTCCAACTACTC-CCAAACCCCT---GC-------------CG-----------------------------------------T----TSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................GCTACGAGGATGCCGTTAAGCGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droBip1
-------------CAAGGAGTCCAAGCACGCT---TGCATCAGCTACGAGGATGCCGTTAAGCGAGGTGAGC------------TCTCC---------------------------------GGACGGGCA---ACTGTC-GA-TGGA-AGAGAAAA-------------TGAC---------------------------CG----------------------------TGGAAATGGGTCAC--TG-----------------------CT-----AATCA---ACGCAA--CTT---GACCAA--------------------------T---------AAAAACAA---------CA---ACAA-----------------------------------TGGGCCCCAGAACACCAA---CACAGGTGTGATTGCGCT-TTATCGA------TTC-CATTG--TTG---TGCTTCCACAAATTCTAAT----------------------------------------------------------------------TG-----------------------------------------T-C-ACSizeHit CountTotal NormTotal
No Reads
droKik1
AAAAGATGGGCACCAAGGAGTCCAAGCACTCAAACAGCATCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTG----------TGCTGC----CC------------------------CCTGGCTGGACC--AAA----------------------TTCCC-----------TGG----------------------GA--------------------------AA-GTGAAAATGGGTCACACAG-----------------------CT-----AATCAACGACGTCG--CTTCTA-------------GAAA-A-CAGAA----------------------CAA---------CACC---AA-----------------------------------CAT---AC---------AT---ACAGGTGTGATTGCGCT-TTATCGA------TTCCCATTG--TTGTTGTGCTCTCACGTTTGCTGAC------CACTACACCCTGGACACAAG---------GTGG---------TT---CCAC-------------TG-------------------------------------------C-CCSizeHit CountTotal NormTotal
No Reads
droFic1
-------------CAAGGAGTCGAAACACTCCAATAGCATCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTT----------TTAA--CTGCCTCAA--------------------------------A---TTT-TG-GA-TGGTA--------ACACCCTCCGG--T---------------------------GACTGC---------------------------GGAAAATGGGTCACTCTG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAACCCCC-GC---------AATAGCAA---------CAGCAACAA-----------------------------------C----------------AAACCGCAGGTGTGATTGCGCTGCAATCGA------TTC-CATTG--TTGTTG--CTTCCACGATTTCTGCC------CAGTG-------G-----------------------------TTCCTATAC-------------TGACCA-----------------------------------------CCSizeHit CountTotal NormTotal
No Reads
droEle1
-------------CAAGGAGTCCAAGCACTCCAATAGCATCAGCTATGAGGATTCGGTGAAGCGCGGTGAGTGAG--------TCCTCC---------------------------------GGATGGGTA---TTT-TG-GA-TAGTA--------ACACCC-CCGGTG-----------------------------GCC-------------------------AG-TGGAAAATGGAGTAC--TA-----------------------CT-----AATCA-----------------------------AGCAA-A-CAAAATCCCC--------------------------------------------------------------------------------------------------ACT-----------GCAATCGA------TTC-CATTG--TTGTTG--CTCATACGATTTCTGAC------CAGTG-------C-----------------------------CTCCTCCAC-------------TG-----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
-------------CAAGGAGTCCAAACACTCCAATAGCATAAGCTACGAGGATTCGGTAAAGCGCGGTAAGTGAA--------TTCTCC---------------------------------GGATGGGTA---TTT-TG-GGTTGGTA--------ATATAC-CCGGTG-----------------------------GCG-------------------------AG-TGGAAAATGGGTTAC--GG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAAACCCC--------------------------------------------------------------------------------------------------GCT-----------GCAATCGA------TTC-CATTG--TTATTG--GTCGCACCATTTCTGAC------GAAAG-------T-----------------------------TTTCCCCAC-------------TGACCA-----------------------------------------CCSizeHit CountTotal NormTotal
No Reads
droBia1
-------------CAAGGAGTCCAAGCACTCCAATAGCATCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTG----------TCCTCC---------------------------------GCTCGG-AA---TTT-TC-GTGTGCCA--------GTGCCC-CCCGTC----------------------------GGA--------------------------AG-TGGAAAATGGGTCAC--TG-----------------------CT-----AATCA-----------------------------AGAAACA-CAGAGAACCCCGC---------ACAAGCAA---------CAAC----------------------------------------------AC---------GG---GCAGGT-----------GCAATCGA------TTC-CATTG--TTGTTG--CGCCCACGACTTCTGAC------CAGTG-------G-----------------------------CTCCCGCACCACCCCCGCT-CCTGACCACCACCCTCTGCTC---CTCCACAACCTGCAATTGAAATTC-CCSizeHit CountTotal NormTotal
No Reads
droTak1
-------------CAAGGAGTCCAAACACTCCAATAGCATCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTG----------TCCTCC----C----------------------------AATTGG-AA---TTT-TGT--------------------------------------------------------------------------------------AG-TGGAAAATGGGTCAC--TG-----------------------CT-----AATCA-----------------------------CGAAA-AGCAGAACCCCC-GC---------AGAAGCAA---------CACCAACAA-----------------------------------C-----AC---------AG---GCAGGT-----------GCAATCGATTCCGATTC-CATTG--TTGTTG--CG-------CTTCTGAC------CAGCG-------G-----------------------------TTCCCCCGC---------CCCCTGACCCA------CTGCTC---CTACTGATCCTGG-------ATTT-CCSizeHit CountTotal NormTotal
No Reads
droEug1
-------------CAAGGAGTCCAAGCACTCCAATAGCATCAGCTATGAGGATTCAGTGAAGCGCGGTGAGTG----------TCCACG---------------------------------GGCTCGAAA---TTT-TT-GATTGTT---------ATTCCCTGCTGTA-----------------------------GGC-------------------------ATTGGGAAAATGGGTAAC--TG-----------------------CT-----AATCA-----------------------------AGAAA-AAGAGAACCCCC--G---------AAAAGCAA---------CAGCAACAA-----------------------------------C-----AA---------AA---GCAGGT-----------GCAATCGA------TTC-AATTT--GTG--------------------TC------CAGTG-------A-----------------------------TTATTCCAC------------CTGACCAACACCATCTTCTCTCTCTC------------------TTT-CCSizeHit CountTotal NormTotal
No Reads
dm3
-------------CAAGGAGTCCAAGCACTCCAATAGCGTCAGCTACGAGGATTCGGTGAAACGCGGTGAGTC----------TCCTCC---------------------------------GGCTGGTTA---CTTG--T---G------------GGG-------------C----------------CGTCTCCCAGCCGC---------------------------AGAAAATAGGTCAC--TG-----------------------CC-----AATCA-----------------------------AGAAA-A-CAGAACCCCCTGC---------GAAAGCAA---------CAAC---AA-----------------------------------CGT---AC---------AA---GCAGGT-----------GCAATCGA------TTC-CATTGTGTTGTTG--CGCCCACGTCTTCTGAC------CAACG-------G---------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................CCAATAGCGTCAGCTACGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CAATAGCGTCAGCTACGAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGA------TTC-CATTGTGTTGT............................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GTCAGCTACGAGGATTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000
......................................GTCAGCTACGAGGATTCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGTTG--CGCCCACGTCTTC...........................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AGCACTCCAATAGCGTCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA------TTC-CATTGTGTTGTTG--CGC.....................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AATAGGTCAC--TG-----------------------CC-----AATCA-----------------------------AG.........................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-CATTGTGTTGTTG--CGCCCACGTC..............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CGAGGATTCGGTGAAACGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................TAGCGTCAGCTACGAGGATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AGCGTCAGCTACGAGGATTCGGTGAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TC----------TCCTCC---------------------------------GGCTGGTTA---CTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGGATTCGGTGAAACGCGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................GAGGATTCGGTGAAACGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................TACGAGGATTCGGTGAAACGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TACGAGGATTCGGTGAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................CAAC---AA-----------------------------------CGT---AC---------AA---GCAGGT-----------GC.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CTACGAGGATTCGGTGAAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TTCGGTGAAACGCGGTGAGTC----------TCCTCC---------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-CATTGTGTTGTTG--CGCCCACG................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................AGCTACGAGGATTCGGTGAAACGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AA---------CAAC---AA-----------------------------------CGT---AC---------AA---GCAGGT-----------.........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TA---CTTG--T---G------------GGG-------------C----------------CGTCTC................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AGCTACGAGGATTCGGTGAAACGCGGTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................GAAACGCGGTGAGTC----------TCCTCC---------------------------------GGCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AGCGTCAGCTACGAGGATTCGGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCGA------TTC-CATTGTGTTG.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................GAGGATTCGGTGAAACGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................AGCTACGAGGATTCGGTGAAACGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGTGTTGTTG--CGCCCACG................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...............................................................................................................................GTTA---CTTG--T---G------------GGG-------------C----------------CGTCTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................TCC---------------------------------GGCTGGTTA---CTTG--T---G------------GGG-------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG--CGCCCACGTCTTCTGAC------.................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTGTTG--CGCCCACGTCTTCT..........................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCAGCTACGAGGATTCGGTGAAACGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GCTGGTTA---CTTG--T---G------------GGG-------------C----------------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AGCTACGAGGATTCGGTGAAACGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TA---CTTG--T---G------------GGG-------------C----------------CGTCTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TTC-CATTGTGTTGTTG--CGCC....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................CCAATAGCGTCAGCTACGAGGATTCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CTCC---------------------------------GGCTGGTTA---CTTG--T---G------------GGG-------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................CGGTGAGTC----------TCCTCC---------------------------------GGCTGGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................GTCAGCTACGAGGATTCGGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TTA---CTTG--T---G------------GGG-------------C----------------CGTCTCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GT-----------GCAATCGA------TTC-CATTGTGT...............................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TACGAGGATTCGGTGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.....................CCAAGCACTCCAATAGCGTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GCTGGTTA---CTTG--T---G------------GGG-------------C----------------......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GCTACGAGGATTCGGTGAAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGA------TTC-CATTGTGTTGTTG--........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................GTCAGCTACGAGGATTCGGTGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-------------CAAGGAGTCCAAGCACTCCAATAGCGTCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTC----------TCCTCC---------------------------------GGCTGGTTA---CTTG--T---G------------GGG-------------C----------------CGTCTCCCAGCCGC---------------------------TGAAAATAGGTCAC--TG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAACCCCCTGC---------GAAAGCAA---------CAAC---AA-----------------------------------CGT---AC---------AA---GCAGGT-----------GCAATCGA------TTC-CATTGTGTTGTTG--CGCCCACGTCTTCTGAC------CAACG-------G---------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................AGGTCAC--TG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGA...............................................................................................................................................................................................................................................................................................2612.00200000020000000000
......................................................................GTC----------TCCTCC---------------------------------GGCTGGTTA---CTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.........................................................TGAAGCGCGGTGAGTC----------TCCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
........................................................................................C---------------------------------GGCTGGTTA---CTTG--T---G------------GGG-------------C----------------......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTG--CGCCCACGTCTTCTG.........................................................................................................................2111.00101000000000000000
droSec2
-------------CAAGGAGTCCAAGCACTCCAATAGCGTCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTC----------TCCTCC---------------------------------GGCTGGTTA---CTTG--T---G------------GGG-------------C----------------CGTCTCCCAGCCGC---------------------------AGAAAATAGGTCAC--TG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAACCCCCTGC---------GAGAGCAA---------CAAC---AA-----------------------------------CGT---AC---------AA---GCAGGT-----------GCAATCGA------TTC-CATTGTGTTGTTG--CGCCCACGTCTTCTGAC------CAACG-------G---------------------------------------------------------------------------------------------------GSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................GTCAGCTACGAGGATTCGGTGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
................................AATAGCGTCAGCTACGAGGATTCGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
droYak3
-------------CAAGGAGTCCAAGCACTCCAATAGCGTCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTC----------TCCTCC---------------------------------GGCTGGTTA---CTAG--TACTT------------GTA-------------C----------------CGTCTCACAGCCGC---------------------------AGAAAATAGGTCAC--TG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAACCCCCTGC---------AACAGCAA---------CAACCACAA-----------------------------------CTT---TC---------AA---GCAGGT-----------GCAATCGA------TTC-CATTGTGTTGTTG--CGCCCAAGTCTGCAGAC------CAAAT------AT-----------------------------AT---------------------------------------------------------------TTT-CCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................ACGAGGATTCGGTGAAGCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50100000010000
........................AGCACTCCAATAGCGTCAGCTACGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50101000000000
........................................................................................................................................................................................................................................................................................................................................................................CAACCACAA-----------------------------------CTT---TC---------AA---GCAGG.....................................................................................................................................................................................2120.50101000000000
droEre2
-------------CAAGGAGTCCAAACACTCCAATAGCGTCAGCTACGAGGATTCGGTGAAGCGCGGTGAGTC----------TCCTCC---------------------------------GGCTGGCTA---CTTG--TACTT------------GTA-------------C----------------CGTCGTACAGCCGC---------------------------AGAAAATAGGTCAC--TG-----------------------CT-----AATCA-----------------------------AGAAA-A-CAGAACCCCCTCC---------AAAAGCAA---------CAACAACAA-----------------------------------CTT---AC---------AA---GCAGGT-----------GCAATCGA------TTC-CATTGTGTTGCTG--CGCCCACGTCTGCTGAC------CAACT------GG-----------------------------ATTCTCCAC-------------TGACCAC------------------------------------CAG-CCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................CGTCAGCTACGAGGATTCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTCTGCTGAC------CAACT------GG-----------------------------.......................................................................2011.0011000000
...................................................ATTCGGTGAAGCGCGGTGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT------GG-----------------------------ATTCTCCAC-------------TGACCAC------------------------------------C.....2111.0011000000
.................................................................................................................................................................................................................................................................................................................................CAGAACCCCCTCC---------AAAAGCAA---------C...........................................................................................................................................................................................................................................................2211.0010100000

Generated: 05/21/2015 at 04:19 PM