ID:

dvi_21032

 Coordinate:

scaffold_13049:22861909-22862059 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.0 -8.9 -8.8

Flybase annnotation

CDS [Dvir\GJ13998-cds]; exon [dvir_GLEANR_13846:1]; intron [Dvir\GJ13998-in]

No Repeatable elements found

Sense Strand Reads

-------------#####################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATGAGTTATAGACATGATTGTGTGTGTGTTGATTTGTTGTTTCAGAGCCAGTTTCTGGTTTCTGAAACAAATTGAAAAAGCACGCTACAAACGAAGCTTCCTTGAGAATATTTATGTGCATAAGGAATCAAAAAAAAAACAAAAACAAAACTAACAAGTCAAAAGAAAAATTATTCAATAATTTGCTGAAACACCTGAGTGTCAAAAAAAAACAAAAAAAAAAAAACACGCAAAAAAAAAAAATAAAAAAT
*****************************************************************..(((((((.........(((........)))(((((((...(((....)))...)))))))......................(((....))).....(((......)))..)))))))...............*************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060666
160_males_carcasses_total
 M061
embryo
 SRR060676
9xArg_ovaries_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 SRR060672
9x160_females_carcasses_total
 M027
male body		 SRR060668
160x9_males_carcasses_total
 SRR060664
9_males_carcasses_total
 V053
head
 SRR060667
160_females_carcasses_total
 SRR060665
9_females_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060681
Argx9_testes_total
 SRR060679
140x9_testes_total
 SRR060678
9x140_testes_total
 SRR060656
9x160_ovaries_total
 SRR060670
9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060675
140x9_ovaries_total
 SRR060674
9x140_ovaries_total
 GSM1528803
follicle cells		 M028
head
...............................ATCTGTTGTTTCAAGGCCAGT....................................................................................................................................................................................................... 21 3 2 9.50 19 3 0 6 0 0 1 0 2 2 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0
...............................ATCTGTTGTTTCAAGGCCAGTT...................................................................................................................................................................................................... 22 3 1 8.00 8 2 0 1 0 0 2 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TAGACATGATTGTGTGTGTGT.............................................................................................................................................................................................................................. 21 0 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GTTGATTTGTTGTTTCAGAGCC.......................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGTTGTTTCAAGGCCAGTT...................................................................................................................................................................................................... 19 2 4 1.25 5 2 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ATTCAATAATTTGCTGAAACACCTGAGT................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TGATTGTGTGTGTGTTGATTTG....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................AACAAATTGAAAAAGCACGCTAC................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AATTTGCTGAAACACCTGAGTGT................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TACAAACGAAGCTTCCTTGAGAATAT............................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AAAAGCACGCTAGAAAGGA............................................................................................................................................................. 19 2 2 1.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................AGTTTCTGGTTTCTGAAACA...................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GTTATAGACATGATTGTGTGTGT................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................CGAAGCTTCCTTGAGAAT.............................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................CAGATTCTGGTTTCTGAAAC....................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................AATTGAAAAAGCACGCTACAAACGAAGC.......................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GCATAAGGAATCAAAAAAAC.................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................TATTCAATAATTTGCTGAAACACCTGAGT................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CCTGAGTGTCAAAAAAAA........................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ATAGACATGATTGTGTGTGT................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GTTGATTTGTTGTTTCAGAGC........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGTTGTTTCAGAGCCAGTTTCTGGT................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTTATGTGCATAAGGAATCAAAAAA.................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AAACGAAGCTTCCTTGAGA................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGGCTGGAACACCTGAGTGTCAAAA............................................ 25 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ACGCTACAAACGAAGCTTCCTT.................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TGAGTTATAGACATGATTGTGTGTGTGT.............................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATTTGCTGAAACACCTGAGT................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGTTGATTTGTTGTTTCAGAGCC.......................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......TATAGACATGATTGTGTGTGTG............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TATGTGCATAAGGAATCAAAAAAAA.................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATTTGCTGAAACACCTGAGTGT................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ATAATTTGCTGAAACACCTGAGT................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GTTGTTTCAAGGCCAGTTT..................................................................................................................................................................................................... 19 2 2 1.00 2 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TGTTTCAGAGCCAGTTTC.................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGTTGATTTGTTGTTTCAGAGCCAGTT...................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..GAGTTATAGACATGATTGTTTGTGT................................................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................GTGTTGATTTGTTGTTTCAGAGCC.......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AATTTGCTGAAACACCTGAGTGTCA............................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................ATCTGTTGTTTCAAGGCCAGTTT..................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGTTGTTTCAAGGCCAGTTT..................................................................................................................................................................................................... 20 2 2 1.00 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AATTATTCAATAATTTGCTGAAACACCT....................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AATTTGCTGAAACACCTGAGTGTCAAAA............................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TGAGTTATAGACATGATTGTGTGTG................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.TGAGTTATAGACATGATTGTGTGTGT................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GCACGCTACAAACGAAGC.......................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTTATGTGCATAAGGAATCAAA....................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATTGAAAAAGCACGCTACAAA................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................AGTTTCTGGTTTCTGAAAC....................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTGTGTTGATTTGTTGTTTCAGAGC........................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TCTGTTGTTTCAAGGCCAGTT...................................................................................................................................................................................................... 21 3 3 0.67 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................GTTGTTTCAAGGCCAGTT...................................................................................................................................................................................................... 18 2 5 0.60 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGTTGTTTCAAGGCCAGT....................................................................................................................................................................................................... 18 2 7 0.43 3 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................AGTTTATTTATGTGCATAAGGA............................................................................................................................. 22 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TTTCAGAGCCAGTTTTTGGGA............................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TCTGTTGTTTCAAGGCCAGT....................................................................................................................................................................................................... 20 3 9 0.33 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................................ATATTTATTTGCATAAGGA............................................................................................................................. 19 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................ATCTGTTGTTTCAAGGCCAG........................................................................................................................................................................................................ 20 3 10 0.30 3 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................CTGTTGTTTCAAGGCCAGT....................................................................................................................................................................................................... 19 3 20 0.20 4 1 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TATGATTGTGTGTGTGTTG............................................................................................................................................................................................................................ 19 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................CTGTTGTTTCAAGGCCAGTT...................................................................................................................................................................................................... 20 3 17 0.18 3 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TATCAGAGCCAGTTTTTAGTT............................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGCATTAGGAATAAAAAAAAA.................................................................................................................. 21 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................TGTTGTTTCAAGGCCAGTTTT.................................................................................................................................................................................................... 21 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ACCTAGGTGTCAAAAAAA......................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAACACCCAACAAAAA............ 36 3 19 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AACACGGAAAAAAAAAAAA........ 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TCGGAGACAGTGTCTGGTT............................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................GTTGTTTCAAGGCCAGTTTT.................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAAGAAAAAAAAAAAAAAAAACACACAAAAAAAAAA.......... 36 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAAAAAAAAAACACACACAAAAAAAAAAAAAAAAAA.. 36 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TACTCAATATCTGTACTAACACACACACAACTAAACAACAAAGTCTCGGTCAAAGACCAAAGACTTTGTTTAACTTTTTCGTGCGATGTTTGCTTCGAAGGAACTCTTATAAATACACGTATTCCTTAGTTTTTTTTTTGTTTTTGTTTTGATTGTTCAGTTTTCTTTTTAATAAGTTATTAAACGACTTTGTGGACTCACAGTTTTTTTTTGTTTTTTTTTTTTTGTGCGTTTTTTTTTTTTATTTTTTA
***************************************************..(((((((.........(((........)))(((((((...(((....)))...)))))))......................(((....))).....(((......)))..)))))))...............***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V047
embryo
 SRR060676
9xArg_ovaries_total
 M047
female body
 M061
embryo
 SRR060668
160x9_males_carcasses_total
 V053
head
.........................................................................................................................................................................................................AATTTTTTTTTGTTTTTTTTTTTTTGTGTGTTTTGT.............. 36 3 1 1.00 1 1 0 0 0 0 0
...............................................................CTGTGTTTAACTTTTTCCTG........................................................................................................................................................................ 20 2 5 0.60 3 0 0 1 1 1 0
.......................................................................................GTTAGCTTCGAAGGAAGTC................................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0
................................................................TTTGTTTAACTTTTTCCTG........................................................................................................................................................................ 19 1 3 0.33 1 1 0 0 0 0 0
......................................................................................................................................................................................................................TTGTTTTTTTTTGTGCGTTTT................ 21 1 5 0.20 1 0 1 0 0 0 0
............................................................................TTTCGTGCTGTGTTTGCTTC........................................................................................................................................................... 20 2 5 0.20 1 1 0 0 0 0 0
...................................................................................TGGTGTTTGCTTCGAAGG...................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 1
.........................................................................................................................................................................................................................TTTGTGTTTGTGCGTTTTTTTTTTT......... 25 2 7 0.14 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:22861859-22862109 + dvi_21032 ATGAGTTATAGAC---ATGATTGTGTGTGTGTTGATTTGTTGTTTCAGA--GCCA---------------------------GTTTCTGGTTTCTGA-------A---ACAAATTGAAAAAGCACGCTAC--------------------------------------------------------------------------------------------------AAACGAAGCTTCCTTGAGAAT-AT---TTATGTG-----CATAA-----GGAATCAAAAAAAAAACAAAAA---------------------------------------------------------------------------------------------CAAAACTA----------------ACAA----GTCAAAAGAA--AAA-TTATT-------CAATAATTTGCTGAAACA-C-C-TGAGTGTCAAAAAAA----A-ACAAA-------A---AAAAAA-----------------------------AAACA------C-G-------------------------------CAA--------AAA---AAA---A---AAATAAAA-----------AAT
droMoj3 scaffold_6473:3654850-3655090 - ATGAAAAACAAAA---ATATTTAGATAC----GCTGTGATTTATTTTAA--GTAATTAATT---------------------ACACCCTTTTTT-TG-------A---ATAGTTT---TTAGTGAG----------------------------------------------------------------------------------------------AATGAAACAAATGTAAATTATTAAAGAGT-AT---TTATACTATATTTATGCCACAGCAA----AT-----------ATCGATGCAAAATGTCATTCCAAGCAAAGCCACGAAAAGAAAATTTAAAA-AAAAA------------------A--------------AAAAA---------------------------------------------------------------------------------------------AAAAA-----A-AAAAA-------A--------------------------------------AAACA------G-A-------------------------------GAA--------AAG---AAG---A---AAAGAAAA-----------TAA
droGri2 scaffold_15110:18136635-18136887 + ATGAGTTATAGAC---ATGA------AC----TGTGCGGTTGTATCAGA--GCTAT----G-CGGCCCCCGAAAAGCTGTT----TCTAGTTTTTAAAAACAACG---ACAACTC---AAAGCACGTTAC--------------------------------------------------------------------------------------------------AG---ACGCTTCCTTAAAA-T-TT---ATATGTG-----TATAT-----G-----------------------------------------------------------------------TAAGGGGAGAC---AACAAATATTAAATATATAT----------CAAGTCA----------------AATA----TTTTGCTTGAG-AAA-TTATAAAAAAAAAAATAGTTTGCTGAAACACACT-CTAGTGTCAAAGA-----------------------------------------ACAA-------------------AACAAAT-----------------------------------------------------------A-----AGA-----------ATT
droWil2 scf2_1100000004902:6126025-6126203 + AAAC----------------------------------------AAACA--AACAA----AACAAACCAACA--AACGAACAGATTTCGATACC-C---------------------------------C------------------GCAAACAAAAATGAAAACAACAACAAAAAGCAACCAATAACTAAATAACAACAAACCCATGTTTTTAGTAAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------CAA----TATAAATTAA----------AAAA---------------------------------------------------------------------------A--AAAAAAA-------------------AACAAAC-ACAAAAACAA--------------------------------A----------------AAAATGGA-----------AAA
dp5 XR_group6:11806894-11807190 + GGAAAGGATATAC---ATTGCA---TAC----TTAATGGTTGTATCAGA--GCTAC-TATTGCGGCCCT--------------CTTTTAGTTCGTAG-------TAAGACCAGAC---CA----TA-CCC--------------------------------------------------------------------------------------------------AG---ACGCTTCCTTAAGTAACAG---TAACAGT-----AACAG--T--AAAAGTAAA------------------------------------------------------------G-GTAACGGT-AAC---GGCAACAGT--------------TAAAGTAAAATTGA-----------AATTGTCAT----TGTCGCTTGA--GAA-TTATC-------AAATAATTTGCTGAAAAC-TCTACTAGTGTCCAAAAT-----G-ATGGG-------GAA--GGG-------A--GGAACGATAGGGTAGGG----A----AACGAAA-GCATAAC---------------------------A-----------AAGCATAGGATC------TAA------CACG-AAA
droPer2 scaffold_14:2041191-2041294 - AAAAATAA--------------------------------------------------------ACCCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCAAA-----------CTCAA--------------------------------------------C-TCA-------AAATTGCCC--------------------------GAAACCG----------------AAAA----TATATCTTAA----------AAAA----------------------------------------------A-AAAAA-------A----------AAAAA--AAAACAA-------------------TTCGAAA-A--------------------------TCAA-A-------------------------------TCA-----------AAA
droAna3 scaffold_13337:19384815-19385049 + G-----------------------------------------------A--GCTAT----ATTGGTTTTT-A--GGCTTTT----CTTATTTTT-AT-------T---AAAA--T---CAAGTGT--TATATAATATAGATAAAAAGC--------------------------------------------------------------------------------AG---CAGCTTCCTTGACAAA-AA-AATAAA--------AA----------AATAA------------AAA----------------------------------------------------------------------------------------------CAAATCA----------------CAAA----AGTCGCTTGAAAAAA-TTATT-------AAATAATTTGCTGAAA-C---T-CTAGTGTCCAAAAAAT---AAATAAA---TAATT------------------ACAAAA--AA----------ATAT-TAAAAAA---------------------------------ATATAGTTCGA-----------GAATA-----AGAATTAAACACGAAAT
droBip1 scf7180000396360:578508-578749 + AGTT-----GGGAATGATGGTA---TAC----TTGATGGTTGTATCAGAGAGCTA----------------A--TGCTAATTGGTTTTAGTTAATAG----ATCG---TCGTCTC---TAATCATGTTATA-------AATA--------------------------------------------------------------------------------------GA---AAGCTTCCTTAAAAAA-AG---AAAAAAT-----TTTTC-----AAAACAA------------AAA-----------------------------------------------C-----------------------------------------------AAATCA----------------CAAA----AGTCGCTTGA--AAA-TTATC-------AAATAATTTGCTGAAA-C---T-CTAGTGTCCAAAAAAC---A-ACAAA-------A------------------ACAAAA-------------------AACCAAA---------------------------------ACAAAGTTCGA-----------GAATA-----AGA-----------ATT
droKik1 scf7180000302391:611453-611737 + AGGACTAATAGAA---ATGATA---TAC----TTAATGGTTGTATCACA--GCTATATACTGCGACCCCCTG--AGTTGTTTGCTTTTAGTTTT-AG-------A---ACAACTC---TA------------------------------------------------------------------------------------------------------------------AGCTTCCTTAAGTAA-AA---TAGTAAC-----GAAAA-----CAAA----A-------------CAA--------------------------------------------C--AA-------AAGCAGGCAAAAGTGA---------GA--GGTGAAGAGATAG--------------TAACGAAGTCAGTCGCTTAA--AAA-GTATA-------AAATAATTTGCTGAAACA-ACT-CTAGTGTCCAAAAA-----A-A---AAAATCTTG--ATAGG---AAAAC--T-AACAA----------GACAGAGCA------T-T-------------------------------GAG--------GAG------AAGGAT---ATAAAA-----------GAA
droFic1 scf7180000454113:2435726-2435983 + ----------------------------------------TGTATCACA--GCTAT----GGCGGCCCCTTA--AGTTGTTTGCTTTTAGTTTTTAG-------G---ACAACTC---TAAGCATGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AT---TAATAAT-----AATAG-----CAAACTAAA------------------------------------------------------------C-GAAACGGA--ACACAAGCAAAGGT--------------GAGAGGAGAGATGA--------------TAACAA----AGTCGCTTAA--AAATTTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAA-----G-A---------------TAGC---AAAAC--GAAACGA-------------------AACAAAA-GCAA-ACTTAACAAA-----------------ACA--------------------A---AAAGAGAA-----------GAA
droEle1 scf7180000491193:4153332-4153625 - A-----------------------------------TGGTTGTATCACA--GCTAT----GGCGACCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCATGTTAC--------------------------------------------------------------------------------------------------GG---AAGCTTCCTTAAGTAA-AAAAATAATAAT-----AATAA--CAACAAACTT------------AAA-----------------------------------------------C-AAA-------ATACAAGCAAATGT--------------GAAAGGAGAGATGA-----------------TAA----AGTCGCTTAA--AAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAATACGGAG-A---C-------G--ATGGG---GAGAC--GAAACGA-------------------AACGAAACG-AA-ACAAAACAAAACAAAACCAAAACCTAAACA-----------AAG---AAGGTTAAAAAAAAA-----------AAC
droRho1 scf7180000773422:53812-54056 + ----------------------------------------TGTATCACA--GCTAT----GGCGGCCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCATGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AA---TAATAAT-----AATAA-----CAAACTTAA------------------------------------------------------------C-AAA-------ATACAAGCTAAAGT--------------GGGAGGAGAGATGA-----------------TAA----AGTCGCTTAA--AAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-A---A-------G--ATAGG---GAGAC--GAAACGA-------------------AACAAAA-GCAAA---------------------------ACA-----------AAG---AAGGTT------AAA-----------AAC
droBia1 scf7180000302193:5800211-5800463 + AGAA------------ATGACA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGGCCCCTTA--AGTTGTTTGCT-TTAGTTTT-AG-------G---ACAACTC---TAGGCGTGTTAC--------------------------------------------------------------------------------------------------GG---AAGCTTCCTTAAGTAA-AA---TAATAAT-----AGTACCGCAGCCAACTGAA------------------------------------------------------------T-GAA-------ACACAAGCAAA-GT--------------GGGTGGGGAGATGA-----------------CAG----GGTCGCTTAA--AGA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAGGG-----G----------------------AGGAGAT--GAAACGA-------------------AACAAAA-GCAAA-GT--------------------------------------------------------AAG-----------AAC
droTak1 scf7180000415254:695888-696143 + ----------------------------------------TGTATCACA--GCTAT----GGCGGCCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AA---ATAAAAT-----AATAA-----CGAACTAAA------------------------------------------------------------T-GAA-------ATTCAAGCAAA-ATGG---------GAGGAGAGGAGAGATGA-----------------TAA----AGTCGCTTAA--AAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-A---A-------G--ATGGG---AAGACGAGAAACGA-------------------AACAAAA-GCAAAAGTAAAATAA----------AATAAA-AC-------------------------------AA-----------AAC
droEug1 scf7180000409466:5065778-5066063 + A-----------------------------------TGGTTGTATCACA--GCTAT----GGCGACCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCATGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AA---TAATAAT-----AA--A-----TAAACTA------------CAACA---------------------------------------------A-GAA-------ATGCAAGCTAAAGTGA------------GAGAGGAAAGATGAAGGATAAATAAAAAACATAA----AGTCGCTTAA--AAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-A---A-------G--ATAGGAAGAAGAC--GGAACGA-------------------AACAAAA-GCAAAAGTAAACGAA-----------------ACA-----------AAGAAGAAGGTT------AAG-----------AAC
dm3 chr3L:19882569-19882832 - AGAA------------ATGATA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGATCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTT---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AA---TAATAAT-----AATAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGCGGAGAGATAA----------------ATAA----AGTCGCTTGA--TAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GATATGTGAAGAATAT--GAAACGA-------------------AAGAAAT-GCAAAACTAA----------------------ACA-----------AAG---A-----------ACT-----------AAC
droSim2 3l:19476528-19476776 - AGAA------------ATGATA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGATCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AG---TAATAAT-----AATAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGAGGAGAGATGA----------------ATGA----AGTCGCTTGA--TAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GATATGGGAAGAAGAT--GAAACGA-------------------AACAAAT-GCAAAACT-------------------------------------------------------------------------
droSec2 scaffold_29:527897-528142 - AGAA------------ATGATA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGATCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AG---TAATAAT-----AATAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGAGGAGAGATGA----------------ATGC----AGTCGCTTGA--TAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GATATGGG---AAGAT--GAAACGA-------------------AACAAAT-GCAAAACT-------------------------------------------------------------------------
droYak3 3L:20694434-20694689 + AGGACTAATAGAA---ATGATA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGACCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTT---TAAACGCGTTAC--------------------------------------------------------------------------------------------------AA---AAGCTTCCTTAAATAA-AA---TAAT--------AATAT-----CGAACTAAA------------------------------------------------------------AAAAAAC------------------T--------------GA--GAAGAGATGA----------------ATAA----AGTCGCTTGA--TAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GATATAGG---AAGAT--GAAACGA-------------------AACAAA--------------------------------------------------G---AACTTTA-----AGA-----------AAT
droEre2 scaffold_4784:19620774-19621028 - AGGACTAATAGAA---ATGATA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGACCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AA---TAAT--------AATAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAAAGGAGAGATGA----------------ATAA----AGTCGCTTGA--TAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GATATAGGAGGAAGAT--GAAACGA-------------------AACAAAT-GTAAAACT-------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
ATGAGTTATAGAC---ATGATTGTGTGTGTGTTGATTTGTTGTTTCAGA--GCCA---------------------------GTTTCTGGTTTCTGA-------A---ACAAATTGAAAAAGCACGCTAC--------------------------------------------------------------------------------------------------AAACGAAGCTTCCTTGAGAAT-AT---TTATGTG-----CATAA-----GGAATCAAAAAAAAAACAAAAA---------------------------------------------------------------------------------------------CAAAACTA----------------ACAA----GTCAAAAGAA--AAA-TTATT-------CAATAATTTGCTGAAACA-C-C-TGAGTGTCAAAAAAA----A-ACAAA-------A---AAAAAA-----------------------------AAACA------C-G-------------------------------CAA--------AAA---AAA---A---AAATAAAA-----------AATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........TAGAC---ATGATTGTGTGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000000020000000000000000100000000000000000000000000000000000
..............................GTTGATTTGTTGTTTCAGA--GCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000200000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-------CAATAATTTGCTGAAACA-C-C-TGAGT.................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.................TGATTGTGTGTGTGTTGATTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................A---ACAAATTGAAAAAGCACGCTAC--------------------------------------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCTGAAACA-C-C-TGAGTGT...............................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................TAC--------------------------------------------------------------------------------------------------AAACGAAGCTTCCTTGAGAAT-AT---..................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
......................................................A---------------------------GTTTCTGGTTTCTGA-------A---ACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....GTTATAGAC---ATGATTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CGAAGCTTCCTTGAGAAT-.......................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................AATTGAAAAAGCACGCTAC--------------------------------------------------------------------------------------------------AAACGAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................G-----CATAA-----GGAATCAAAAAAAC..............................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT-------CAATAATTTGCTGAAACA-C-C-TGAGT.................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-C-TGAGTGTCAAAAAAA----A-.................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.......ATAGAC---ATGATTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
..............................GTTGATTTGTTGTTTCAGA--GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
....................................TTGTTGTTTCAGA--GCCA---------------------------GTTTCTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AT---TTATGTG-----CATAA-----GGAATCAAAAAA................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................AAACGAAGCTTCCTTGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................ACGCTAC--------------------------------------------------------------------------------------------------AAACGAAGCTTCCTT..............................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
.TGAGTTATAGAC---ATGATTGTGTGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCTGAAACA-C-C-TGAGT.................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.............................TGTTGATTTGTTGTTTCAGA--GCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
......TATAGAC---ATGATTGTGTGTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................TATGTG-----CATAA-----GGAATCAAAAAAAA..............................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCTGAAACA-C-C-TGAGTGT...............................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTTGCTGAAACA-C-C-TGAGT.................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
........................................TGTTTCAGA--GCCA---------------------------GTTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000100
.............................TGTTGATTTGTTGTTTCAGA--GCCA---------------------------GTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
............................GTGTTGATTTGTTGTTTCAGA--GCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCTGAAACA-C-C-TGAGTGTCA.............................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-TTATT-------CAATAATTTGCTGAAACA-C-C-T.....................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCTGAAACA-C-C-TGAGTGTCAAAA..........................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000100
.TGAGTTATAGAC---ATGATTGTGTGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
.TGAGTTATAGAC---ATGATTGTGTGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................GCACGCTAC--------------------------------------------------------------------------------------------------AAACGAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AT---TTATGTG-----CATAA-----GGAATCAAA...................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................ATTGAAAAAGCACGCTAC--------------------------------------------------------------------------------------------------AAA..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
......................................................A---------------------------GTTTCTGGTTTCTGA-------A---AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................GTGTGTTGATTTGTTGTTTCAGA--GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
ATGAAAAACAAAA---ATATTTAGATAC----GCTGTGATTTATTTTAA--GTAATTAATT---------------------ACACCCTTTTTT-TG-------A---ATAGTTT---TTAGTGAG----------------------------------------------------------------------------------------------AATGAAACAAATGTAAATTATTAAAGAGT-AT---TTATACTATATTTATGCCACAGCAA----AT-----------ATCGATGCAAAATGTCATTCCAAGCAAAGCCACGAAAAGAAAATTTAAAA-AAAAA------------------A--------------AAAAA---------------------------------------------------------------------------------------------AAAAA-----A-AAAAA-------A--------------------------------------AAACA------G-A-------------------------------GAA--------AAG---AAG---A---AAAGAAAA-----------TAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................AAA-AAAAA------------------A--------------AAAAA---------------------------------------------------------------------------------------------AAAAA-----A-AAAAA-------A--------------------------------------AAACA------G-A-------------------------------GA...............................................3550.201000100
.......................................................................................................................................................................................................................................................................................................................................................AAAA-AAAAA------------------A--------------AAAAA---------------------------------------------------------------------------------------------AAAAA-----A-AAAAA-------A--------------------------------------AAACA------G-A-------------------------------G................................................3580.131010000
................................................................................................................................................................................................................................................................................................................................................................A------------------A--------------AAAAA---------------------------------------------------------------------------------------------AAAAA-----A-AAAAA-------A--------------------------------------AAAC..........................................................................................23200.051000010
droGri2
ATGAGTTATAGAC---ATGA------AC----TGTGCGGTTGTATCAGA--GCTAT----G-CGGCCCCCGAAAAGCTGTT----TCTAGTTTTTAAAAACAACG---ACAACTC---AAAGCACGTTAC--------------------------------------------------------------------------------------------------AG---ACGCTTCCTTAAAA-T-TT---ATATGTG-----TATAT-----G-----------------------------------------------------------------------TAAGGGGAGAC---AACAAATATTAAATATATAT----------CAAGTCA----------------AATA----TTTTGCTTGAG-AAA-TTATAAAAAAAAAAATAGTTTGCTGAAACACACT-CTAGTGTCAAAGA-----------------------------------------ACAA-------------------AACAAAT-----------------------------------------------------------A-----AGA-----------ATTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................GTG-----TATAT-----G-----------------------------------------------------------------------TAAGGGGAGAC---A.....................................................................................................................................................................................................................................................................................2111.00101
......................................GTTGTATCAGA--GCTAT----G-CGGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
................................................................................................................................................................................................................................................................TATGTG-----TATAT-----G-----------------------------------------------------------------------TAAGGGGAGA..........................................................................................................................................................................................................................................................................................2211.00110
droWil2
AAAC----------------------------------------AAACA--AACAA----AACAAACCAACA--AACGAACAGATTTCGATACC-C---------------------------------C------------------GCAAACAAAAATGAAAACAACAACAAAAAGCAACCAATAACTAAATAACAACAAACCCATGTTTTTAGTAAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------CAA----TATAAATTAA----------AAAA---------------------------------------------------------------------------A--AAAAAAA-------------------AACAAAC-ACAAAAACAA--------------------------------A----------------AAAATGGA-----------AAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................AACAGATTTCGATACC-C---------------------------------C------------------GCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..........................................................................................................................................................................ACAAAAAGCAACCAATAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.....................................................................................................................................................................CAACAACAAAAAGCAACCAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...............................................................................ACAGATTTCGATACC-C---------------------------------C------------------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
............................................................................................................................................................................AAAAAGCAACCAATAACTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
dp5
GGAAAGGATATAC---ATTGCA---TAC----TTAATGGTTGTATCAGA--GCTAC-TATTGCGGCCCT--------------CTTTTAGTTCGTAG-------TAAGACCAGAC---CA----TA-CCC--------------------------------------------------------------------------------------------------AG---ACGCTTCCTTAAGTAACAG---TAACAGT-----AACAG--T--AAAAGTAAA------------------------------------------------------------G-GTAACGGT-AAC---GGCAACAGT--------------TAAAGTAAAATTGA-----------AATTGTCAT----TGTCGCTTGA--GAA-TTATC-------AAATAATTTGCTGAAAAC-TCTACTAGTGTCCAAAAT-----G-ATGGG-------GAA--GGG-------A--GGAACGATAGGGTAGGG----A----AACGAAA-GCATAAC---------------------------A-----------AAGCATAGGATC------TAA------CACG-AAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................CGTAG-------TAAGACCAGAC---CA----TA-CC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020110000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--GGG-------A--GGAACGATAGGGT......................................................................................................1812.0020100001000
..............................................................................................................................................................................................................................................................................................................................................................................................................GA-----------AATTGTCAT----TGTCGCTTGA--GA...........................................................................................................................................................................................................2311.0010100000000
...............................................................................................................................................................................................................................................................................G--T--AAAAGTAAA------------------------------------------------------------G-GTAACGGT-AAC---GGC...................................................................................................................................................................................................................................................................................2611.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTCAT----TGTCGCTTGA--GAA-TT.......................................................................................................................................................................................................2411.0010100000000
................................................................................................................................................................................................................................................CTTAAGTAACAG---TAACAGT-----AACAG--C--............................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
.......................................TTGTATCAGA--GCTAC-TATTGCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAT-----G-ATGGG-------GAA--GG..............................................................................................................................1811.0010100000000
.........................................................................................GTTCGTAG-------TAAGACCAGAC---CA----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAC---------------------------A-----------AAGCATAGGATC------TAA------CAC.....2411.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAT----TGTCGCTTGA--GAA-T........................................................................................................................................................................................................2011.0010000000100
................................................................GCCCT--------------CTTTTAGTTCGTAG-------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................AATTGA-----------AATTGTCAT----TGTCGCTTGA--GAA-.........................................................................................................................................................................................................2811.0010100000000
.......................................................................................TAGTTCGTAG-------TAAGACCAGAC---CA----TA-CC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000001
...................GCA---TAC----TTAATGGTTGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.........ATAC---ATTGCA---TAC----TTAATGGTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAT----TGTCGCTTGA--GA...........................................................................................................................................................................................................2011.0010010000000
......................................................................................................................................................................................................................................................................................AAAGTAAA------------------------------------------------------------G-GTAACGGT-AAC---GGCAAC................................................................................................................................................................................................................................................................................2611.0010000100000
................................................................................................................................CC--------------------------------------------------------------------------------------------------AG---ACGCTTCCTTAAGTAAC.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTGTCCAAAAT-----G-ATGGG-------.....................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATAGGGTAGGG----A----AACGAAA-GC...............................................................................2311.0010100000000
..........................................................................................TTCGTAG-------TAAGACCAGAC---CA----TA-CC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATAGGGTAGGG----A----AACGA....................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA--GGG-------A--GGAACGATAGGGT......................................................................................................2011.0010100000000
...................................ATGGTTGTATCAGA--GCTAC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
..................................................................................................................................................................................................................................................................................................................................................................................GT--------------TAAAGTAAAATTGA-----------AATTGTCAT----T........................................................................................................................................................................................................................2611.0010100000000
droPer2
AAAAATAA--------------------------------------------------------ACCCCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCCAAA-----------CTCAA--------------------------------------------C-TCA-------AAATTGCCC--------------------------GAAACCG----------------AAAA----TATATCTTAA----------AAAA----------------------------------------------A-AAAAA-------A----------AAAAA--AAAACAA-------------------TTCGAAA-A--------------------------TCAA-A-------------------------------TCA-----------AAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
G-----------------------------------------------A--GCTAT----ATTGGTTTTT-A--GGCTTTT----CTTATTTTT-AT-------T---AAAA--T---CAAGTGT--TATATAATATAGATAAAAAGC--------------------------------------------------------------------------------AG---CAGCTTCCTTGACAAA-AA-AATAAA--------AA----------AATAA------------AAA----------------------------------------------------------------------------------------------CAAATCA----------------CAAA----AGTCGCTTGAAAAAA-TTATT-------AAATAATTTGCTGAAA-C---T-CTAGTGTCCAAAAAAT---AAATAAA---TAATT------------------ACAAAA--AA----------ATAT-TAAAAAA---------------------------------ATATAGTTCGA-----------GAATA-----AGAATTAAACACGAAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................GCTAT----ATTGGTTTTT-A--GGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGTTCGA-----------GAATA-----AGA..............1911.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-------AAATAATTTGCTGAAA-C---T-CTAGT.................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TAAAAAA---------------------------------ATATAGTTCGA-----------GAATA-----AGA..............2811.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------------------ATATAGTTCGA-----------GAATA-----AGA..............2211.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAA---------------------------------ATATAGTTCGA-----------GA.........................2011.001000010
....................................................CTAT----ATTGGTTTTT-A--GGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
....................................................CTAT----ATTGGTTTTT-A--GGCTTTT----CTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
................................................A--GCTAT----ATTGGTTTTT-A--GGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGAAA-C---T-CTAGTGTCCA............................................................................................................................................................2211.001000100
........................................................................................................................................................................................................................................................A-AA-AATAAA--------AA----------AATAA------------AAA----------------------------------------------------------------------------------------------CC......................................................................................................................................................................................................................................................21200.051010000
droBip1
AGTT-----GGGAATGATGGTA---TAC----TTGATGGTTGTATCAGAGAGCTA----------------A--TGCTAATTGGTTTTAGTTAATAG----ATCG---TCGTCTC---TAATCATGTTATA-------AATA--------------------------------------------------------------------------------------GA---AAGCTTCCTTAAAAAA-AG---AAAAAAT-----TTTTC-----AAAACAA------------AAA-----------------------------------------------C-----------------------------------------------AAATCA----------------CAAA----AGTCGCTTGA--AAA-TTATC-------AAATAATTTGCTGAAA-C---T-CTAGTGTCCAAAAAAC---A-ACAAA-------A------------------ACAAAA-------------------AACCAAA---------------------------------ACAAAGTTCGA-----------GAATA-----AGA-----------ATTSizeHit CountTotal NormTotal
No Reads
droKik1
AGGACTAATAGAA---ATGATA---TAC----TTAATGGTTGTATCACA--GCTATATACTGCGACCCCCTG--AGTTGTTTGCTTTTAGTTTT-AG-------A---ACAACTC---TA------------------------------------------------------------------------------------------------------------------AGCTTCCTTAAGTAA-AA---TAGTAAC-----GAAAA-----CAAA----A-------------CAA--------------------------------------------C--AA-------AAGCAGGCAAAAGTGA---------GA--GGTGAAGAGATAG--------------TAACGAAGTCAGTCGCTTAA--AAA-GTATA-------AAATAATTTGCTGAAACA-ACT-CTAGTGTCCAAAAA-----A-A---AAAATCTTG--ATAGG---AAAAC--T-AACAA----------GACAGAGCA------T-T-------------------------------GAG--------GAG------AAGGAT---ATAAAA-----------GAASizeHit CountTotal NormTotal
No Reads
droFic1
----------------------------------------TGTATCACA--GCTAT----GGCGGCCCCTTA--AGTTGTTTGCTTTTAGTTTTTAG-------G---ACAACTC---TAAGCATGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AT---TAATAAT-----AATAG-----CAAACTAAA------------------------------------------------------------C-GAAACGGA--ACACAAGCAAAGGT--------------GAGAGGAGAGATGA--------------TAACAA----AGTCGCTTAA--AAATTTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAA-----G-A---------------TAGC---AAAAC--GAAACGA-------------------AACAAAA-GCAA-ACTTAACAAA-----------------ACA--------------------A---AAAGAGAA-----------GAASizeHit CountTotal NormTotal
No Reads
droEle1
A-----------------------------------TGGTTGTATCACA--GCTAT----GGCGACCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCATGTTAC--------------------------------------------------------------------------------------------------GG---AAGCTTCCTTAAGTAA-AAAAATAATAAT-----AATAA--CAACAAACTT------------AAA-----------------------------------------------C-AAA-------ATACAAGCAAATGT--------------GAAAGGAGAGATGA-----------------TAA----AGTCGCTTAA--AAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAATACGGAG-A---C-------G--ATGGG---GAGAC--GAAACGA-------------------AACGAAACG-AA-ACAAAACAAAACAAAACCAAAACCTAAACA-----------AAG---AAGGTTAAAAAAAAA-----------AACSizeHit CountTotal NormTotal
No Reads
droRho1
----------------------------------------TGTATCACA--GCTAT----GGCGGCCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCATGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AA---TAATAAT-----AATAA-----CAAACTTAA------------------------------------------------------------C-AAA-------ATACAAGCTAAAGT--------------GGGAGGAGAGATGA-----------------TAA----AGTCGCTTAA--AAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-A---A-------G--ATAGG---GAGAC--GAAACGA-------------------AACAAAA-GCAAA---------------------------ACA-----------AAG---AAGGTT------AAA-----------AACSizeHit CountTotal NormTotal
No Reads
droBia1
AGAA------------ATGACA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGGCCCCTTA--AGTTGTTTGCT-TTAGTTTT-AG-------G---ACAACTC---TAGGCGTGTTAC--------------------------------------------------------------------------------------------------GG---AAGCTTCCTTAAGTAA-AA---TAATAAT-----AGTACCGCAGCCAACTGAA------------------------------------------------------------T-GAA-------ACACAAGCAAA-GT--------------GGGTGGGGAGATGA-----------------CAG----GGTCGCTTAA--AGA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAGGG-----G----------------------AGGAGAT--GAAACGA-------------------AACAAAA-GCAAA-GT--------------------------------------------------------AAG-----------AACSizeHit CountTotal NormTotal
No Reads
droTak1
----------------------------------------TGTATCACA--GCTAT----GGCGGCCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AA---ATAAAAT-----AATAA-----CGAACTAAA------------------------------------------------------------T-GAA-------ATTCAAGCAAA-ATGG---------GAGGAGAGGAGAGATGA-----------------TAA----AGTCGCTTAA--AAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-A---A-------G--ATGGG---AAGACGAGAAACGA-------------------AACAAAA-GCAAAAGTAAAATAA----------AATAAA-AC-------------------------------AA-----------AACSizeHit CountTotal NormTotal
No Reads
droEug1
A-----------------------------------TGGTTGTATCACA--GCTAT----GGCGACCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCATGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AA---TAATAAT-----AA--A-----TAAACTA------------CAACA---------------------------------------------A-GAA-------ATGCAAGCTAAAGTGA------------GAGAGGAAAGATGAAGGATAAATAAAAAACATAA----AGTCGCTTAA--AAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-A---A-------G--ATAGGAAGAAGAC--GGAACGA-------------------AACAAAA-GCAAAAGTAAACGAA-----------------ACA-----------AAGAAGAAGGTT------AAG-----------AACSizeHit CountTotal NormTotal
No Reads
dm3
AGAA------------ATGATA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGATCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTT---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AA---TAATAAT-----AATAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGCGGAGAGATAA----------------ATAA----AGTCGCTTGA--TAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GATATGTGAAGAATAT--GAAACGA-------------------AAGAAAT-GCAAAACTAA----------------------ACA-----------AAG---A-----------ACT-----------AACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................T--------------GAGCGGAGAGATAA----------------ATAA----AGTCGCT..................................................................................................................................................................................................................26115.00150000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000030000000000000000000000100900000
......................................................................................................................TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................2719.0090000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000200000
.............................................................................................................................................................................................................................................................................TAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGCGGA........................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..........................................................................................................................................................................................................................................................................................................................................................T-AAAAC------------------T--------------GAGCGGAGAGATAA----------------ATAA----AGT......................................................................................................................................................................................................................2816.0060000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.............................................................................................T-AG-------G---ACAACTT---TAAGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................T-AAAAC------------------T--------------GAGCGGAGAGATAA----------------ATAA----AG.......................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................AAAAC------------------T--------------GAGCGGAGAGATAA----------------AT...............................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
...................................................................................................................................................................................................................................................................................................................................................................................T--------------GAGCGGAGAGATAA----------------ATAA----AG.......................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................T-AG-------G---ACAACTT---TAAGCGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------AAATTATTTGCTGAAA-C---T-CTAGTGTC..............................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................TTAATGGTTGTATCACA--GCTAT----GGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................C------------------T--------------GAGCGGAGAGATAA----------------ATAA----AGTCGCT..................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-A................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTTTAGTTTT-AG-------G---ACAACTT---TAAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................TTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AA---TA................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TTTGCTTTTAGTTTT-AG-------G---ACAACTT---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................AGCGGAGAGATAA----------------ATAA----AGTCGC...................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TAA----AGTCGCTTGA--TAA-TTATC-------AAATTAT......................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...............................................................................................................................................................................................................................................................................................................................................................AC------------------T--------------GAGCGGAGAGATAA----------------ATAA----AGTC.....................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-------GATATGTGAAGAATAT--GAAACG.............................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................A--AGTTGTTTGCTTTTAGTTTT-AG-------G---.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TT-AG-------G---ACAACTT---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AA......................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TAAT-----AATAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------...............................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................T-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGC...........................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TAGTTTT-AG-------G---ACAACTT---TAAGCGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-TTATC-------AAATTATTTGCTGAAA-C---T-C.....................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-A................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TAT----GGCGATCCCTTA--AGTTGTTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCTTGA--TAA-TTATC-------AAATTATT.....................................................................................................................................................................................2612.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TAA----------------ATAA----AGTCGCTTGA--TAA-TTATC-------AAA..........................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AC------------------T--------------GAGCGGAGAGATAA----------------ATAA----AGTCGCT..................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATAT--GAAACGA-------------------AAGAAAT-.................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................GTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-A......................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TT-AG-------G---ACAACTT---TAAGCGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAAAT-----G-ATAAA-------GATATGTGAA...........................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................TCCCTTA--AGTTGTTTGCTTTTAGTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-A................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TAA----AGTCGCTTGA--TAA-TTATC-------AAA..........................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GA...................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................T-AAAAC------------------T--------------GAGCGGAGAGATAA----------------ATAA----A........................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
.................................................................TCCCTTA--AGTTGTTTGCTTTTAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--GAAACGA-------------------AAGAAAT-GCAAA............................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................AGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTC.................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGCGGAGAGA....................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................TAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGC...........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GA...................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AC------------------T--------------GAGCGGAGAGATAA----------------ATAA----AGTCG....................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTAGTTTT-AG-------G---ACAACTT---TAAGCGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATAT--GAAACGA-------------------AAGAAAT-GCAAAACT.........................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TAA----------------ATAA----AGTCGCTTGA--TAA-TTATC-------AAAT.........................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TT---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAT--GAAACGA-------------------AAGAAAT-GCAAAAC..........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--GAAACGA-------------------AAGAAAT-GCA..............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGAA------------ATGATA---TAC----TTAATGGTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAGAATAT--GAAACGA-------------------AAGAAA...................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGAATAT--GAAACGA-------------------AAGAAAT-GC...............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAGAATAT--GAAACGA-------------------AAGAAAT-GCA..............................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATAA----------------ATAA----AGTCGCTTGA--TA...........................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAAGAATAT--GAAACGA-------------------AAG......................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGGTTGTATCACA--GCTAT----GGCGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GATA.................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATTTGCTGAAA-C---T-CTAGTGTC..............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................TAGTTTT-AG-------G---ACAACTT---TAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-------GATATGTGAAGAATAT--GAAAC..............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................T--------------GAGCGGAGAGATAA----------------ATAA----AGTC.....................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TAATGGTTGTATCACA--GCTAT----GGCGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................TTGTATCACA--GCTAT----GGCGATCCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
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droSim2
AGAA------------ATGATA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGATCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AG---TAATAAT-----AATAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGAGGAGAGATGA----------------ATGA----AGTCGCTTGA--TAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GATATGGGAAGAAGAT--GAAACGA-------------------AACAAAT-GCAAAACT-------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAAAAT-----G-ATAAA-------GATATGGGA............................................................................................................................2514.00400000003010000000
........................................................................................AGTTTT-AG-------G---ACAACTC---TAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00301200000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGAAGAAGAT--GAAACGA-------------------AACAA....................................................................................2713.00300000000000012000
................................................................................................................................................................................................................................................................................................................................................................C------------------T--------------GAGAGGAGAGATGA----------------ATGA----AGTCGCT..................................................................................................................................................................................................................2712.00200000000000002000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGGAAGAAGAT--GAAACG.............................................................................................................2112.00200000000000002000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-A................................................................................................................................................2612.00200000020000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGA----------------ATGA----AGTCGCTT.................................................................................................................................................................................................................1512.00200000000002000000
...........................................................................GTTGTTTGCTTTTAGTTTT-AG-------G---AC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
..........................................................................................................................................................................................................................................................................................................................................................T-AAAAC------------------T--------------GAGAGGAGAGATGA----------------ATGA----A........................................................................................................................................................................................................................2612.00200000000000002000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGGAAGAAGAT--GAAACG.............................................................................................................2211.00100000000000001000
.........................................................................................GTTTT-AG-------G---ACAACTC---TAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-------GATATGGGAAGAAGAT--GA.................................................................................................................2211.00100000000000001000
................................................................................TTGCTTTTAGTTTT-AG-------G---ACAACTC---TA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATTTGCTGAAA-C---T-CTAGT.................................................................................................................................................................2211.00101000000000000000
.....................................................................................................................................................................................................................................................................T-----AATAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGAGG.........................................................................................................................................................................................................................................................2811.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGTCCAAAAT-----G-ATAAA-------GATATGGGA............................................................................................................................2811.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAAGAAGAT--GAAACGA-------------------AACAAAT-GC...............................................................................2711.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-------GATATGGGAAGAAGAT--GAAACGA-------------------.........................................................................................2711.00100000000000001000
.................................................................................................................TC---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAGAAGAT--GAAACGA-------------------AACAAAT-.................................................................................2611.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCTGAAA-C---T-CTAGG.................................................................................................................................................................1811.00101000000000000000
..................................................................................................................................................................................................................................................TAAGTAA-AG---TAATAAT-----AATAT-----CGAAA.......................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TGA----------------ATGA----AGTCGCTTGA--TAA-TTATC-------AAA..........................................................................................................................................................................................2811.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................T-AAAAC------------------T--------------GAGAGGAGAGATGA----------------ATGA----AGT......................................................................................................................................................................................................................2811.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----G-ATAAA-------GATATGGGAAGAAGAT--GAAACGA-------------------.........................................................................................3011.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................T-AAAAC------------------T--------------GAGAGGAGAGATGA----------------ATGA----.........................................................................................................................................................................................................................2511.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGGAAGAAGAT--GAAACGA-------------------AACAAA...................................................................................2711.00100000000000010000
..........................................................................................TTTT-AG-------G---ACAACTC---TAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC-------AAATTATTTGCTGAAA-C---T-CTAG..................................................................................................................................................................2611.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAGAAGAT--GAAACGA-------------------AACAAA...................................................................................2511.00100000000000001000
...........................................................................................TTT-AG-------G---ACAACTC---TAAGCGTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
............................................................................................TT-AG-------G---ACAACTC---TAAGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..........................................................................................................................................................................................................................................................................................TAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGAGGAGAGATGA----------------.................................................................................................................................................................................................................................2511.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CTAGTGTCCAAAAT-----G-ATAAA-------GATAT................................................................................................................................2611.00100000000001000000
.....................................................................................................................................................................................................................................................................................CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGAGGAGAGA....................................................................................................................................................................................................................................................2711.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCTGAAA-C---T-CTAGTGTCCAA...........................................................................................................................................................2411.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTGAAA-C---T-CTAGTGTCCAAAA.........................................................................................................................................................2511.00100000001000000000
.............................................................................................T-AG-------G---ACAACTC---TAAGCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
........................................TGTATCACA--GCTAT----GGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1730.33100000001000000000
..............................................................................................................AACTC---TAAGCGTGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1580.25200000000002000000
droSec2
AGAA------------ATGATA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGATCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AG---TAATAAT-----AATAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAGAGGAGAGATGA----------------ATGC----AGTCGCTTGA--TAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GATATGGG---AAGAT--GAAACGA-------------------AACAAAT-GCAAAACT-------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................C---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGC....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................................................................................................................CTC---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGC....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-----G-ATAAA-------GATATGGG---AA........................................................................................................................1911.0010010
............................................................................................................................................................................................................................................................................ATAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------...............................................................................................................................................................................................................................................................2011.0010010
............................................................................................................................................................................................................................................................................................AA------------------------------------------------------------T-AAAAC------------------T--------------GAGAGGAGAGATGA----------------ATG..............................................................................................................................................................................................................................2611.0010100
.............................................................................................................CAACTC---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---A.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..............................................................................GTTTGCTTTTAGTTTT-AG-------G---A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----G-ATAAA-------GATATGGG---AAGAT--GAAACG.............................................................................................................2711.0010001
.................................................................................TGCTTTTAGTTTT-AG-------G---ACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
.............................................................................................................................................................................................................................................................................................................................................................AAAC------------------T--------------GAGAGGAGAGATGA----------------ATGC----AG.......................................................................................................................................................................................................................2511.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................GAGAGGAGAGATGA----------------ATGC----AGT......................................................................................................................................................................................................................2111.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................AGGAGAGATGA----------------ATGC----AGTCGCTT.................................................................................................................................................................................................................2311.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................AGGAGAGATGA----------------ATGC----AGTCGC...................................................................................................................................................................................................................2111.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAT-----G-ATAAA-------GATATGGG---AA........................................................................................................................2111.0010100
.....................A---TAC----TTAATGGTTGTATCACA--GCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..................GATA---TAC----TTAATGGTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............................................................................................................................TTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAA-------GATATGGG---AAGAT--GAAACGA-------------------.........................................................................................2511.0010010
droYak3
AGGACTAATAGAA---ATGATA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGACCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTT---TAAACGCGTTAC--------------------------------------------------------------------------------------------------AA---AAGCTTCCTTAAATAA-AA---TAAT--------AATAT-----CGAACTAAA------------------------------------------------------------AAAAAAC------------------T--------------GA--GAAGAGATGA----------------ATAA----AGTCGCTTGA--TAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GATATAGG---AAGAT--GAAACGA-------------------AACAAA--------------------------------------------------G---AACTTTA-----AGA-----------AATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................TTT-AG-------G---ACAACTT---TAAACGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2221.50330000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGATGA----------------ATAA----AGTC.....................................................................................................................................................................................................................1820.50100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCTGAAA-C---T-CTAGTGTCC.............................................................................................................................................................2220.50100001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGG---AAGAT--GAAACGA-------------------A........................................................................................2020.50100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGCTGAAA-C---T-CTAGTGTCC.............................................................................................................................................................2320.50101000000000
.............................................................................................T-AG-------G---ACAACTT---TAAACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTATTTGCTGAAA-C---T-CTAGTGTCCA............................................................................................................................................................2820.50101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT--GAAACGA-------------------AACAAA--------------------------------------------------G---AACTTTA-----AGA-----------A..2820.50101000000000
............................................................................................TT-AG-------G---ACAACTT---TAAACGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGA-------------------AACAAA--------------------------------------------------G---AACTTTA-----AGA-----------...2320.50100100000000
....................TA---TAC----TTAATGGTTGTATCACA--GCTAT----.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAA-------GATATAGG---AAGAT--G..................................................................................................................1920.50100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT--GAAACGA-------------------AACAAA--------------------------------------------------G---AACTTTA-----AG...............2620.50100100000000
.............................................................................................................................................................................................................................................................................................................................................................AAAC------------------T--------------GA--GAAGAGATGA----------------ATAA----A........................................................................................................................................................................................................................2220.50100000010000
...............................................................................................................................................................................................................................................................................................................................................................AC------------------T--------------GA--GAAGAGATGA----------------ATAA----.........................................................................................................................................................................................................................1920.50101000000000
................................................................................................................................................................................................................................................................................................................................................................C------------------T--------------GA--GAAGAGATGA----------------ATAA----AGTCGCTTG................................................................................................................................................................................................................2720.50101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATTTGCTGAAA-C---T-CTAGTGTCCAA...........................................................................................................................................................2820.50100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................A--GAAGAGATGA----------------ATAA----AGTCGCTT.................................................................................................................................................................................................................2320.50100000010000
.............................................................................................................................................................................................................................................................................................................................................................AAAC------------------T--------------GA--GAAGAGATGA----------------ATAA----AGT......................................................................................................................................................................................................................2420.50100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------AAATTATTTGCTGAAA-C---T-CTAGT.................................................................................................................................................................2420.50101000000000
......AATAGAA---ATGATA---TAC----TTAATGGTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------------------AACAAA--------------------------------------------------G---AACTTTA-----AGA-----------...1920.50100100000000
................................................................................................................CTT---TAAACGCGTTAC--------------------------------------------------------------------------------------------------AA---AAGC....................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
droEre2
AGGACTAATAGAA---ATGATA---TAC----TTAATGGTTGTATCACA--GCTAT----GGCGACCCCTTA--AGTTGTTTGCTTTTAGTTTT-AG-------G---ACAACTC---TAAGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-AA---TAAT--------AATAT-----CGAACTAAA------------------------------------------------------------T-AAAAC------------------T--------------GAAAGGAGAGATGA----------------ATAA----AGTCGCTTGA--TAA-TTATC-------AAATTATTTGCTGAAA-C---T-CTAGTGTCCAAAAT-----G-ATAAA-------GATATAGGAGGAAGAT--GAAACGA-------------------AACAAAT-GTAAAACT-------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................A---TAC----TTAATGGTTGTATCACA--GCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000200
.............................................................................................................................................................................................................................................................................................A------------------------------------------------------------T-AAAAC------------------T--------------GAAAGGAGAGATGA----------------.................................................................................................................................................................................................................................2211.0010001000
.........AGAA---ATGATA---TAC----TTAATGGTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAA-C---T-CTAGTGTCC.............................................................................................................................................................1811.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATAGGAGGAAGAT--GAAACGA-------------------.........................................................................................2311.0010000100
.................TGATA---TAC----TTAATGGTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTGCTGAAA-C---T-CTAGT.................................................................................................................................................................2011.0010000100
..............................................................................................................................................................................................................................................................................................................................................................AAC------------------T--------------GAAAGGAGAGATGA----------------ATAA----AGTC.....................................................................................................................................................................................................................2611.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA-------GATATAGGAGGAAGAT--GAAACGA-------------------.........................................................................................2711.0010000100
....................TA---TAC----TTAATGGTTGTATCACA--GCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCTGAAA-C---T-CTAGT.................................................................................................................................................................1811.0010000010
............................................................................................................................................................................................................................................................................................................................................................AAAAC------------------T--------------GAAAGGAGAGATGA----------------ATAA----A........................................................................................................................................................................................................................2511.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................GAGAGATGA----------------ATAA----AGTCGCT..................................................................................................................................................................................................................2011.0010000100
.............................................................................................................................GTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT--GAAACGA-------------------AACAAAT-GT...............................................................................1911.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAT-----G-ATAAA-------GATATAGGAGGAA........................................................................................................................2411.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCTGAAA-C---T-CTAGTGTCCAAA..........................................................................................................................................................2511.0010000100
........................................................................................................................AGCGTGTTAC--------------------------------------------------------------------------------------------------GA---AAGCTTCCTTAAGTAA-A......................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000100

Generated: 05/21/2015 at 04:18 PM