ID:

dvi_21004

 Coordinate:

scaffold_13049:22752005-22752155 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-15.0

Flybase annnotation

CDS [Dvir\GJ13986-cds]; exon [dvir_GLEANR_13835:2]; intron [Dvir\GJ13986-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GAACGAGCAGAGTATGCAGAATTCGATGTATGATTATTCAACTTTCGATGGTACGCAAATGGAATCGGGACAGAGCGAATTCGTGTGTGACTGCAAATCGTGTCGCAGAGCTTACCAAGATTCGACCTCAAATCAGACTATGGCCGCTTCACTATATAGTCAGCCTCCTAAAACCTTTTCGGATAAGTCCACCTATGTTCGATCGTGTATGCAGAAAGATGTGGCCCCAAGCTGTGTGCATCAAAAACGAG
***********************************************************************.(((((...((((((.(((.......(((.(((..............))).))).......))).)).)))).))))).....************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR060666
160_males_carcasses_total
 SRR060684
140x9_0-2h_embryos_total
 V116
male body		 M027
male body		 SRR060687
9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 M047
female body
 M028
head
 SRR060679
140x9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 GSM1528803
follicle cells		 SRR060681
Argx9_testes_total
 SRR060665
9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060659
Argentina_testes_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060680
 9xArg_testes_total
 V047
embryo
 SRR060660
Argentina_ovaries_total
 SRR060658
140_ovaries_total
 SRR060678
9x140_testes_total
 SRR060655
9x160_testes_total
 M061
embryo
 SRR060675
140x9_ovaries_total
 V053
head
 SRR060657
140_testes_total
 SRR060670
9_testes_total
 SRR060689
160x9_testes_total
 SRR060683
160_testes_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060676
9xArg_ovaries_total
....................................ATCAACTTTCGATGGTAGG.................................................................................................................................................................................................... 19 2 12 169.08 2029 332 328 354 25 188 148 77 5 78 96 68 27 31 44 64 42 20 0 3 26 17 11 5 4 1 5 0 3 1 0 10 6 3 4 0 0 0 1 2 0
.....................................TCAACTTTCGATGGTAGG.................................................................................................................................................................................................... 18 1 1 138.00 138 21 22 1 3 14 13 16 1 6 5 5 4 5 4 3 3 2 0 4 1 0 2 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAGGA................................................................................................................................................................................................... 18 2 13 57.92 753 66 45 7 184 70 38 8 81 13 18 17 50 13 8 21 18 10 22 3 13 10 7 7 2 1 3 0 0 0 1 1 5 1 7 1 0 2 0 0 0
......................................CAACTTTCGATGGTAGGATA................................................................................................................................................................................................. 20 3 20 29.25 585 87 25 121 83 16 19 8 16 19 13 16 13 14 14 34 20 9 0 0 6 13 3 15 7 0 1 0 0 0 2 1 1 0 2 2 2 3 0 0 0
.......................................AACTTTCGATGGTAGGATA................................................................................................................................................................................................. 19 3 20 26.85 537 66 0 81 62 61 32 5 36 20 0 26 20 10 0 20 16 14 0 3 11 5 0 0 1 0 0 11 14 2 0 4 7 0 4 3 2 0 0 0 1
......................................CAACTTTCGATGGTAGGG................................................................................................................................................................................................... 18 2 2 23.00 46 0 0 1 36 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCAACTTTCGATGGTAGGA................................................................................................................................................................................................... 19 2 12 20.42 245 14 12 68 31 10 6 3 28 4 2 7 5 11 5 5 3 7 1 2 4 5 1 4 0 0 0 0 1 1 1 0 2 0 1 0 0 0 1 0 0
........................................ACTTTCGATGGTAGGATA................................................................................................................................................................................................. 18 3 20 7.30 146 0 0 0 0 30 12 4 0 16 0 0 26 14 0 0 3 0 0 2 2 2 0 10 0 1 0 7 16 0 0 0 0 0 0 0 1 0 0 0 0
.....................................TCAACTTTCGATGGTAGGATA................................................................................................................................................................................................. 21 3 19 6.63 126 15 4 20 9 10 5 2 3 5 0 6 1 8 1 5 2 15 0 0 3 2 1 0 0 0 0 0 0 0 0 3 0 0 0 3 3 0 0 0 0
........................................................................................................................TCCGACCTCAGATCAGAC................................................................................................................. 18 2 3 4.00 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGGTATG.................................................................................................................................................................................................... 19 2 1 3.00 3 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGGTAGGG................................................................................................................................................................................................... 20 3 19 2.21 42 0 0 1 32 0 0 0 8 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCAACTTTCGATGGTAGGG................................................................................................................................................................................................... 19 2 2 2.00 4 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGGTACG.................................................................................................................................................................................................... 19 1 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAGGCTA................................................................................................................................................................................................. 20 2 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCAACTTTCGATGGTAGGAA.................................................................................................................................................................................................. 20 2 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GTCAACTTTCGATGGTAGG.................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................AGAGCGAATTCGTGTGTGAC................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................TCAGAGCGAATTCGTGTGTGACTGC............................................................................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCAACTTTCGATGGTACGATAGT............................................................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTACGA................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAGGC................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AACTTTCGATGGTAGGGA.................................................................................................................................................................................................. 18 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TGACTGCAAATCGTGTCGCAGAGCT........................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGGTACGA................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................AATCAACTTTCGATGGTAGG.................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AAATCAGACTATGGCCGCTTCACTA................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGGTAAG.................................................................................................................................................................................................... 19 2 2 1.00 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTAACTTTCGATGGTAGG.................................................................................................................................................................................................... 18 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........AGAGTATGCAGAATTCGAT................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGGTAGGC................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCATCTTTCGATGGTAGG.................................................................................................................................................................................................... 18 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AACTTTCGATGGTAGGAA.................................................................................................................................................................................................. 18 2 4 1.00 4 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TTTCAACTTTCGATGGTAGG.................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................AATCAACTTTCGATGGTA...................................................................................................................................................................................................... 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATGTCCGATCGTGTTTGCATA.................................... 21 3 2 1.00 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AACTTTCGATGGTAGGAAAACGG............................................................................................................................................................................................. 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCAACTTTCGATGGTAGGCTAG................................................................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAGGAC.................................................................................................................................................................................................. 19 3 16 0.69 11 0 0 0 7 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAGGATAAT............................................................................................................................................................................................... 22 3 3 0.67 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCAACTTTCGATGGTAGGATAAT............................................................................................................................................................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AACTTTCGATGGTACGATAGT............................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CTTTCGATGGTAGGAAAGTGG............................................................................................................................................................................................. 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTCGACTTTCGATGGTAGG.................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAGGGTA................................................................................................................................................................................................. 20 3 4 0.50 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAGGATAATG.............................................................................................................................................................................................. 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAGGAA.................................................................................................................................................................................................. 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTACGATAGT............................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAGGT................................................................................................................................................................................................... 18 2 5 0.40 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TGAACTTTCGATGGTAGG.................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCAACTGTCGATGGTAGG.................................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................CTCAACTTTCGATGGTAGG.................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGATACG.................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CATCAACTTTCGATGGTAGG.................................................................................................................................................................................................... 20 3 14 0.29 4 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCAACTTTCGGTGGTAGG.................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGGTAAGA................................................................................................................................................................................................... 20 3 20 0.25 5 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGTTAGG.................................................................................................................................................................................................... 19 3 20 0.25 5 2 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................ACTTTCGATGGTAGGCTA................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................ATCAACCTTCGATGGTAGG.................................................................................................................................................................................................... 19 3 16 0.19 3 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATGTCCGATCGTGTTTGCAT..................................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGGTAGGAA.................................................................................................................................................................................................. 21 3 12 0.17 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................AACTTTCGATGGTACGAT.................................................................................................................................................................................................. 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GAGTATGCTGAAAGATGT............................. 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GTCCGATCGTGTTTGCATA.................................... 19 3 15 0.13 2 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGGTAGGT................................................................................................................................................................................................... 20 3 15 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGTCCGATCGTGTTTGCATA.................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CTTTCGATGGTAGGATAATG.............................................................................................................................................................................................. 20 3 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTACGATAG................................................................................................................................................................................................ 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CCTGCAACTCGAGTCGCAGA.............................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GTCAACTTTCGATGGTAGGA................................................................................................................................................................................................... 20 3 19 0.11 2 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATTAACTTTCGATGGTAGG.................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................GGTTTCAACTTTCGATGGTA...................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCATCTTTCGATGGTAGG.................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAAGGTA................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATCGTAGG.................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCTACTTTCGATGGTAGG.................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................ACTTTCGATGGTAGGA................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAGCTTTCGATGGTAGG.................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AACTTTCGATGGTAGGATAA................................................................................................................................................................................................ 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAGTC................................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................TTCAACTTTCGATGGTAGGAT.................................................................................................................................................................................................. 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTCCGATGGTAGG.................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GAAGGACGTGGCCCCCAGC................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGATGGT....................................................................................................................................................................................................... 16 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CTCAACTTTCGATGGTAGGA................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AACTTTCGATGGTAGGGTA................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AACTTTCGATAGTAGGCTA................................................................................................................................................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGAAGGTAGG.................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATGGTAGGAG.................................................................................................................................................................................................. 19 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCACCTTTCGATGGTAGGA................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AACTTTCGATGGTAGGAG.................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCAACTTTCGATCGTAGGA................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACTTTCGAGGGTAGG.................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATAAACTTTCGATGGTAGG.................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAGTTTGACCTCAAATCAG................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCAACTTTCGATTGTAGGA................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................ATCAACATTCGATGGTAGG.................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................ACTTTCGATGGTAGGATAA................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACGTTCGATGGTAGGA................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ATCTATCAACTTTCGATGGTA...................................................................................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTAACTTTCGATGGTAGGA................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAACTTTCGATCGTAGGA................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CAACATATGTTCAATCGTGT........................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TAAACTTTCGATGGTAGGA................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................ATCAACTTTCGATGGTAT..................................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTTGCTCGTCTCATACGTCTTAAGCTACATACTAATAAGTTGAAAGCTACCATGCGTTTACCTTAGCCCTGTCTCGCTTAAGCACACACTGACGTTTAGCACAGCGTCTCGAATGGTTCTAAGCTGGAGTTTAGTCTGATACCGGCGAAGTGATATATCAGTCGGAGGATTTTGGAAAAGCCTATTCAGGTGGATACAAGCTAGCACATACGTCTTTCTACACCGGGGTTCGACACACGTAGTTTTTGCTC
*************************************************************************************************.(((((...((((((.(((.......(((.(((..............))).))).......))).)).)))).))))).....*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V053
head
 SRR1106729
mixed whole adult body
 SRR060687
9_0-2h_embryos_total
 M047
female body
 V116
male body		 SRR060686
Argx9_0-2h_embryos_total
 M027
male body		 SRR060662
9x160_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060681
Argx9_testes_total
 SRR1106727
larvae
 V047
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR1106728
larvae
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 M028
head
 SRR060658
140_ovaries_total
............................................................................................................................TGGAGGTTGGTCTGATAC............................................................................................................. 18 2 4 11.50 46 2 9 6 7 5 3 6 3 0 0 1 1 1 1 1 0 0 0 0 0
............................................................................................................................TGGAGGTTGGTCTGATACT............................................................................................................ 19 3 17 1.88 32 1 4 3 4 10 4 1 0 0 0 1 1 0 0 0 0 0 2 1 0
....................................................................................................................................................................................CCTATGGAGGTGGACACAAGC.................................................. 21 3 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TCCGGGGGTCGACACACGT........... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TGGAGGTTAGTCTGATACT............................................................................................................ 19 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................ATTAGCCCTGCCGCGCTTA........................................................................................................................................................................... 19 3 8 0.63 5 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CCTATGGAGGTGGAAACAAGC.................................................. 21 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TCAGTCGGAGGAATCTGG............................................................................ 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTAGCCCTGTCGCGCTTG........................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TATCGGCGATGTGATATAGC............................................................................................ 20 3 9 0.33 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0
..................................................................................................................................................................................................GACAAGCTAGCAAATAGGT...................................... 19 3 20 0.30 6 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0
.....................................................................................................................................................................................CTATGGAGGTGGACACAAGC.................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................CTATCGGCGATGTGATATA.............................................................................................. 19 3 20 0.20 4 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................................................TGGAGCTTGGTCTGATAC............................................................................................................. 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ACCGGGGTTGGACGCACG............ 18 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................CTATGGAGGTGGAAACAAGC.................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TATCGGCGATGTGATATA.............................................................................................. 18 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CTCCGGGGGTCGACACAAGT........... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CGGCGATGTGATATAGCC........................................................................................... 18 3 20 0.10 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GGGAGGTTGGTCTGATAC............................................................................................................. 18 3 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................AGCTTCAAAGCTACCATGC.................................................................................................................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TGGAGGTTGATCTGATACC............................................................................................................ 19 3 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................CTTCGGTGTTCGACACACGT........... 20 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................ACAAGCTAGCAAATAGGT...................................... 18 2 19 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:22751955-22752205 + dvi_21004 GAACGAGCAGAGTATGCAGAATTCGATGTATGATTATTCAACTTTCGATGGTACGCAAATGGAATCGGGACAGAGCGAATTCGTGTGTGACTGCAAATCGTGTCGCAGAGCTTACCAAGATTCGACCTCAAATCAGACTATGGCCGCTTCACTATATAGTCAGCCTCCTAAAACCTTTTCGGATAAGTCCACCTATGTTCGATCGTGTATGCAGAAAGATGTGGCCCCAAGCTGTGTGCATCAAAAACGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GAACGAGCAGAGTATGCAGAATTCGATGTATGATTATTCAACTTTCGATGGTACGCAAATGGAATCGGGACAGAGCGAATTCGTGTGTGACTGCAAATCGTGTCGCAGAGCTTACCAAGATTCGACCTCAAATCAGACTATGGCCGCTTCACTATATAGTCAGCCTCCTAAAACCTTTTCGGATAAGTCCACCTATGTTCGATCGTGTATGCAGAAAGATGTGGCCCCAAGCTGTGTGCATCAAAAACGAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................AGAGCGAATTCGTGTGTGAC................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
......................................CAACTTTCGATGGTACGA...................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................TGACTGCAAATCGTGTCGCAGAGCT...........................................................................................................................................2511.001000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................AAATCAGACTATGGCCGCTTCACTA.................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
........AGAGTATGCAGAATTCGAT................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.......................................AACTTTCGATGGTACGAT..................................................................................................................................................................................................1860.171000000000000000000000000000000000010000000000000000000000000000

Generated: 05/16/2015 at 07:49 PM