ID:

dvi_20956

 Coordinate:

scaffold_13049:22456523-22456673 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.3 -18.3 -18.1 -18.1

Flybase annnotation

CDS [Dvir\GJ11356-cds]; exon [dvir_GLEANR_11400:6]; intron [Dvir\GJ11356-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCGCCGCAGCAGCAGCAACAGCGCCGCCTGCTGCTGGACGCAAATTCGGGTAGTTATAAAACGGAAGCCACACTAACCAACAATCACCACCAATTCACGAACGCACCAGCTGGCAAGCTAAAGCAGCCTAACAACATTCGCAACAACAGCAGCAGACTCAGCAGCAACATGTTGCAGCGGCAACACTTGCAGCATGCTCAAAGCTTTTATCTACACGAAACACTCGACAATTCTTGTTACTACTCTACAC
*****************************************************************************************************..........((.((((........((............((((((...((.((.......)).))....)))))).)).......))))))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060679
140x9_testes_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 V116
male body		 M028
head
.............................................................................................................................................................................TGCAGCGGCAACACTTGCA........................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.............................TGCTGCTGGACGCAAATTCGG......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGCAACACTTGCAGCATGCTCAAAGCTT............................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TGCAGCGGCAACACTTGCAG.......................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................TAAAAGGAAAGCCACTCTAACCA........................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
....................................GGACGCAAATTCGGGTAGTTATA................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................ACGCACCAGCTGGCAAGCTAA................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................TCAAAGCTTTTATCTACACGA................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................ACCAACAATTCACGAACGCA................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..CGCCGCAGCAGCAGCAACA...................................................................................................................................................................................................................................... 19 0 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................TGGTAAGATAAAGGAGCCT......................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................ACCACCAATTAAGGAAGGC.................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0
.....................................GACGCAAATTCGGATACTTT.................................................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CGGCGGCGTCGTCGTCGTTGTCGCGGCGGACGACGACCTGCGTTTAAGCCCATCAATATTTTGCCTTCGGTGTGATTGGTTGTTAGTGGTGGTTAAGTGCTTGCGTGGTCGACCGTTCGATTTCGTCGGATTGTTGTAAGCGTTGTTGTCGTCGTCTGAGTCGTCGTTGTACAACGTCGCCGTTGTGAACGTCGTACGAGTTTCGAAAATAGATGTGCTTTGTGAGCTGTTAAGAACAATGATGAGATGTG
***********************************************************..........((.((((........((............((((((...((.((.......)).))....)))))).)).......))))))***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060689
160x9_testes_total
 SRR060655
9x160_testes_total
 SRR060674
9x140_ovaries_total
 SRR060679
140x9_testes_total
 M047
female body
 SRR060665
9_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060667
160_females_carcasses_total
...........................................................................................................................................................CTGAGTCGTCGTTGTACAA............................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0
............................................................TTGACTTCGGTGTGCTTGGTT.......................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................TAGTGGTTGTTAAGTGCTTGC................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................CGATTTCGTCGGATTGTTGT.................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................GGTGTGGTTGGTTGTTAGT.................................................................................................................................................................... 19 1 2 0.50 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................TCAACGTCGCCGTTGTGAACGT........................................................... 22 1 2 0.50 1 0 0 0 0 0 1 0 0
.GGCGGCGTCGTCGTCGTTGTC..................................................................................................................................................................................................................................... 21 0 3 0.33 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................CTTTGTGAGCTGTTCCGAA............... 19 2 3 0.33 1 1 0 0 0 0 0 0 0
...................................................................CTGTGTGATTGGTTGTGAGT.................................................................................................................................................................... 20 2 5 0.20 1 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................TGGAAAGCAGATGTGCTTT.............................. 19 3 17 0.06 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:22456473-22456723 - dvi_20956 GCCGCCGCAGCAGCAGC---AACAGCGCCGCCT---------GCT--GC----------------------TGGACGCAAATTCGGGTAGTTAT------------------------------------------------------------------------------AAAACGGAAGCCACACTAACCAACAAT-----------C------------------------------------------------A----------CCACCAATT---------------------------CACGAACGCACC-------------------------------------------AGCTGGCAAGCTAAAGCAGCCTAACAACATTCG------------------------------------------------------------C---------AA-----CAACA---------------------------------------GCA---G------------CAGACTCA--------------------------GCAGCAACAT------------------------------------------------------------------------------GTTGC-----------------------------------AG------CGGCAACAC-----------------------------------------------------------------------TTGCAGC------------------------------------------------ATGCTCAAAGCTTTTATCTACACGAAA---------------------------------CACTCGACAATTCTTGTTACTACT--CTACAC
droMoj3 scaffold_6680:17059196-17059482 - dmo_2514 ACCGCCGCAGCAGCAGC---AACAGCGTCGCCT---------GTT--GC----------------------TGGACGCCAATTCGGGTAGTTAT------------------------------------------------------------------------------AAAACGGCAGCAGCACTAACCAACAAT-----------C------------------------------------------------ACCAATTCA---------------------------------------CCAACAAC-----------------------------------------GCACCTGCTGCCCAGCAAA---TGCTTAACAACAGCAA------------------------------------------------------------C---------AA-----CAACA------------------------GCAGCAGGGGCATCACCA---G------------------------------------------------------------------CAGCAGCAGCAACAGCAATAA--------------------------------------CAACAACCTGA---TG-------------------------------------------------------------------------------------------------------------------------TTGCCGC------------------------------------------------ATGCTCGTAGCTTTCATCTACACGAAACAACATTCAACAACAACAGCAACAA---------GAACAATAATACGTGTTACTACT--CGACAC
droGri2 scaffold_15110:21084166-21084419 + GCCGCCGCAGCAACACC---AACAACGTCGCCT---------GCT--GC----------------------TGGACTCCAATTCGGGTAGTTAT------------------------------------------------------------------------------AAAGCGGCAGCAGCACTAACCAACAAT-----------C------------------------------------------------A-----------------------------------------------CCAACAACAACGACA---AAAACAACAACAGCAACATAAACAAGACACCGCACACGCTGACGCGCTAA---AGCCTTACAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCAACAT------------------------------------------------------------------------------GTTGC-----------------------------------AG------CCGCAACAG-----------------------------------------------------------------------CTACAGC------------------------------------------------ATGCACAAAGCTTCTATCTACACGAAA---------------------------------CGCTCAATAATTCATGCTACTATT--CCACAC
droWil2 scf2_1100000004837:1588629-1588855 - GGCGGCGCAGCAGCAAC---AACAGCAGCCACC---------ACC--GC----------------------CCAT----------------------------------GGGTGGTCCACCGGGAATGCAAGG------------------AGTACC------------------AC---------------------------------C------ACC---A------------------------------AC------------GC------------------------------------AGCAGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------AACA------------------ACAACAGCAGCAGCAACAGCAGCA---G------------------------------------------------------------------CAACAACAGCAGCAGCAACAG--------------------------------------CAGCAG-------------CAACAGCAGCAGCAACAAC--------AGCAACAACAG---------CAG---------------------CAACAGC----------------------------------------------------------------------------------------------------------CGCCATCAACTGGTAC---------------------------------ACCGCCACAGTGCTCGA---------CACCAC
dp5 3:5631981-5632206 - GCAACAGCAGCAGCAAC---AGCAGCAAG-----------------------------TTTTTGCTGT---C-------------------------------------------------------------AGCAGCATTAAAGTAAAAAGTGAAA---------------ACACATTAGCAGCA---------------------------------------------------------GTAACAGCAACAGTTG---CAACACC------------------------------------AACAACAACAACAACC---AAT-----------------------------------------------------------------G------------------------------------------------------------CAAC--------------ACCA------------------GCAGCA---------ACGCCAG------------------------------------------------------------------------CAGCAACAGCAACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCAGC----AGCAAAAAGCATGT-TAGAAAAG------------------------------------AACATCAAGAAG---------------------------------GAATCAACGCCACCGGCAACTACT--CCTAAT
droPer2 scaffold_2:5826475-5826745 - ACAACAGCAACAGCAAC---AACAGCAACAGCA---------GCA--GCAGCAGCAAGTTTTTGCTGT---C-------------------------------------------------------------AGCAGCATTAAAGTAAAAAGTGAAA---------------ACACATTAGCAGCA---------------------------------------------------------GTAACAGCAACAGTTG---CAACACC------------------------------------AACAACAACAACAACT---AAT-----------------------------------------------------------------G------------------------------------------------------------CAACACCAGCAG-----CAACG------------------CCAGCA---------GCAACAGCA---G------------------------------------------------------------------CAGCAACAGCAACA------------------------------------------------------GTAGC-----------------------------------AG------CAGCAACAG-----------------------------------------------------------------------TAGCAGC----AGCAAAAAGCATGT-TAGAAAAG------------------------------------AACATCAAGAAG---------------------------------GAATCAACGCCACCGGCAACTACT--CCTAAT
droAna3 scaffold_13117:4522639-4522875 - ACAACAACAACAACAAC---AACAACAACTATA---------A-A--GA----------------------AAGAAACAAAAAGGAATAGAAAT-----------------------------------------------------------------------------CGAAACAGAAACAACA------------------------------------------------------------------------------------------------------------------------------ACAACAATC---GAC-----------------------------------------------------------------A------------------------------TAAACGTTGCAATCGGAGCCAAAGTCGCAGCAGCATCAGTAG-----CAACA------------------GCAGCA---------GCATCAGCAGCAG------------------------------------------------------------------CAACAGCAGCAGCAGCGGCGG-----------------------------------------AAGCAG----------AAGCGGTAGCATCAAC------------------------------------------------------------GCTACCAACAA-------------------------------------------------------------------------------CAACATC-----------------------------------AAC------------------------------AATAACAACAACAACA---ACAAC
droBip1 scf7180000396022:4512-4733 - GC-GCAGCAACAACAAC---AACAACAATAAA---------------GA----------------------AAGAAA------------------------------------------------GCACAAGA--------------------------------------------------AACACAAA-------------------C--------------------------------------------------------------------------------------------------AACAACAACAACAACAATC----------------------------GCA----------------------------------C------------------------------AAAACGTTGCAATCGAAGCCAAAGTCGCAGCAGCAACAGTAG-----CAACA------------------ACAGCAGCATCAGCAGCAACAGCA---G------------------------------------------------------------------CAGCGGCGGCAGCAG-----------------------------------------------AAGCGGTAGC-AT---CGACGGCGGCAGCAACAAC--------AACAACAACAA---------TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACAACAACA-----ATA
droKik1 scf7180000302344:1389426-1389673 + GCTACCACAGCTGCAAC---AGCAACAGCAGCA---------ACA--GC----------------------TAAA----------------------------------GCTACAACAGCTGCAAAAGCAGCA------------------AAAAAG------------------ACGGCTA------------------------------------------------------------------------CAA------------C------------------------------------AGCAGCAACGGT------------------GG-----------------------------------------------CAACAGCTA------------------------------------------------------------C---------AA-----CTGCAGCTGCAGTGGTATAAACAGCCACAGAAACTGCAACAGTTACA---A------------------------------------------------------------------CAACAGGTACAACAACT--------------------------------------------------------------------------------------------------------ACAC-----------------------------------------------------------------------CAGCAGCAGCTCCACCAACTCATACAGC---AGCAGCTACAAA--------------------------------------------------------------AA---------CTGCAACAACAAGTGCTACAACAACTGCAAC
droFic1 scf7180000453839:1590718-1590933 - G--GCAGCAGCAACATC---AC------TGCGT---------GCC------------------GTGCC---T-------------------------------------------------------------CGTATTTTTAAACGCAAACGTGATA---------------CGGTCCGAACAGCG---------------------------------------------------------ACCACCGCATCACCTT---TGAC-CC------------------------------------CGCAGCAACATC-------------------------------------------------------------------CAACAGTCG------------------------------------------------------------C---------AG-----CAGCA------------------GCAACAGTA------ACATCAGTA---ACCACAG------------------------------------------------------------CAACATCAGCAACAACAGCAACATCCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC-----------------------------------------------------AACCACGCGAAG---------------------------------ATCGCGAC---TGGAGTTCATACT--TTACAC
droEle1 scf7180000491272:509386-509627 - GTCGCAGCAGCAGCAGC---AATTGCTCAGCCA---------GCA--GC----------------------AACA-------------------------------------------------------------------------------------GTCGCATC------------------A----------------------------CCAG-----------------------CAACAGCAGCAGCAAC--------------------ATGC-CGCCT------------------ACCAGCAGC---ACAA---TAT-----------------------------------------------------------------G------------------------------------------------------------TATG--------------CCCA------------------GCAGCAGCAGCAGCAACATCACCA---GCAGCAGCATCAGCAT-----------------------------------C-ACTTCCACCACCAGCAGCAACAGCAACAGCAGCAG--------------------------------------------------------------------------------------------CAA---------CA---------------------------GACG-----CATCATTCGCATCACCACGGTCATAGTCATGAC---------------------------------------------------------------------------------------------------------AACAGCAAC--------------ATGTCGCTGCC--C----T
droRho1 scf7180000780277:36733-36983 - C--GCAGCAACAGCAAC---AAAGGCAACACTT---------A----AA---------------ATAA---CAGCAAC----------------------------------------------------AGA----------------AACGCCA-ATTGTCACAGCAACTGCAACAGCAGCAACAACAACCAAGAGG-----------C------GA-------------------------------CAAGCGG-----------TC------------------------------------AACAGTAGCAACAACAAGCGCTG-----------------------------------------------------------CAGTCG------------------------------------------------------------CAGC--------------AGCA------------------GCAGCAGCA------GCAGCTGCAGTAG---CAG------------------------------------------------------------CAGCAGCAGCAACGCTAGCGT--------------------------CGGCAGCGACGGCAGCAGCATGTCC-AA---AACAAGCAGCGGTAATC------------------------------CAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGCAG----CAACAC
droBia1 scf7180000302193:6379754-6379979 + GCCG-TGCAGCAGCAGC---AACAGCAGCACGG---------GCA--GC----------------------ACCACC--------------------------------------------------------------------------------------------------------------------------------------------AC----AGTGCGGCCGCGGTGGCCGCTGCCGCTGCGGCAGCCG---CCGT-CC------------------------------------ATCAGCAGCAGCAGCA---GGT-----------------------------------------------------------------G------------------------------------------------------------CAGC--------------ACCA------------------GCAGCA------GCAACACCACCA---G------------------------------------------------------------------CAACAGCAGCAGCAGCACCAG-----------------------------------------CAGCAGGTGGCCGCCGTTGCCATGGCGGCCATGGCCAATTTGCTGCCGCAACAG---------CAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTGCTGCA---TCAGC
droTak1 scf7180000415013:41760-41990 + GCAGCAACAGCAGCAGC---AACAAG--------------------------------TCTTTGTTGTTGCC----GCCA--ACAAAATGGTG-ATACCAGCA------------------------------------------------------------------------ACGGGAGCT------------------------------------------------------------------AC---AATCGCCGGTATACC------------------------------------AACAGCAACAACAACAGCTGCC-----------------------------------------------------------------G------------------------------------------------------------CCGAGTCAACAG-----CAAC----------------------GCA------GCAACATCAACA---G------------------------------------------------------------------CAGCAGCAACATATGCAA---------------C-----------------------ACCAGCAACATGTGC-TG---TTCCAGCCGCACCTACA-------AGCAACAACAACAA---------CAA--------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------------------------------------CAGCAGCAAC---CAGCAC
droEug1 scf7180000409538:185351-185587 + GCAGCAGCTGCAGTAGC---AGCAGCAGCAGCA---------GCA--AC-----------------------------------------------------------------------------------------------------------------------------------------GCT----------------------------AG--------------------------------CGTCG---------------------------------------------------------------------GCAGCGACGCCAG-----------------------------------------------CAGCA--------------------------------------------------------------------------------------------------------------------------TGTCCA------------------------AAACAAGCAGCGGGAATCCGAGTGCA-------------------------------------GCAGCAACACAAGCAGCAGCAGCAGCCGCT-----------GCAGCA----------------GCAGCAGCAGCAAGT-----------GCAACAAATG---------CCG---------------------CCAATGCCGCCGATTTCAGTGCGTTCGACTTTAACGATAGTTCCGAT---------------------------------------------------------------------------------------------------------AATTCCGACAC-------G-CCCCTGGTGCCACG---CCCAC
dm3 chrX:12609032-12609224 - GCAGCAGCAGCAGCAGC---AACAGGACCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------GCACCAACCTGCATCTGCAAATCCATCACCACCAC--------------------------------------------------C------------------------------------AACAGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------AGCA------------------GCAGCAGCAGCAGCAACAACAACA---G------------------------------------------------------------------CAACAGCAGCAACAGCAGCAGCAGCAAAAACAGCAGCAACATCATAT---------------------GCAGC-----------------------------------AG------CAGCAGCAG-----------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------AACAACCTTTGTCACCAC----CTCAC
droSim2 3l:13688921-13689195 - C--ACAGCAGCAGCAGC---AACAGAGGATGCAAATGCAGCAGCA--GCCGCA-----------------------------ACAGATTGTTGTAAACCAGCAAATACTCAGTGATCC------------------------------------------------------------------------------------------------------------------------------------TCAGCGATTG---CAGTACC------------------------------------TACAACAACAGCAGTT---AAT-----------------------------------------------------------------G------------------------------------------------------------CAAA--------------AACA------------------GCAACAGCAGCAGCAACAACAACA---G------------------------------------------------------------------CAGCAGCAGCAACAACAGCTA--------------------------GTGGGACCACAACAACAGCAAATCC-TT---ATACAACAGCAGCAAACAC--------CCCAACAACAG---------CAGATACTGCAGCAAAAACTCTCC--------------------------------AACGA-----------------------------------------------------------------------------------------------------------------------------TAA------------TCAGCAA----CAACAA
droSec2 scaffold_0:6164261-6164507 - CC-ACAGCAGCAGCAGC---AACAGAGGATGCAAATGCAGCACCCATGCCGCA-----------------------------ACAGATTGTTGTAAACCAGCAAATACTCAGTGATCC------------------------------------------------------------------------------------------------------------------------------------ACAGCGCTTG---CAGTACC------------------------------------TACAACAACAGCAGTT---AAT-----------------------------------------------------------------G------------------------------------------------------------CAAA--------------AACA------------------GCAACAGCAGCAGCAACAACAACA---G------------------------------------------------------------------CAGCAGCAGCAACAGCTA-----------------------------GTGGGACCACAACAACAGCAAATCC-TT---ATACAACAGCAGCAAACAC--------CCCAACAACAG---------CAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACTGCA--GCAAAA
droYak3 3L:8416234-8416464 - GCCGCCGCTG-AGCAGC---TT--------------------GCC----------------------------------ACTGCAAGTGGTGCA------------------CAATC----------------TGCCGCATTT-----------------GT--------------------------TGG------------------------CCGGCAACG--------------------GTGGCAGCAACGCGG------------------------------------------------------------------GCAACAATGCCAG-----------------------------------------------CAACACCAGCAACTCGAATCTCAATGTGGCGTGCAACAA---------------------------------CA--ATCTG-----CTGC---------------------------------------------------------------------------------------------GCAGCAACATGCAACACCAGCAGCAGCAGCAACAGCAGCAA--------------------------------------------CAACTGC---------------------------------------------------------------------------TC---------------------------------------------------------------AACACACTGAGC---AATGGCAACA---------------------------------------------------------------------------------------ATGTGGCAAG---TGGCAC
droEre2 scaffold_4784:21196906-21197122 - GCTA-TGCCGCAGCAACAACATCAGCAACTCG-----------TT--TC----------------------GGGA--------------------------------------------------TCGCAAGT---------------------GATG---------------GCACCGCATCAGCA-----------------------------------------------------------------------------------TCAGCAACCTATTCAGATCCCAGTTCAGATGCAAGTTCCAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CTTCTGTGGCTCCTCAAAT---------------------------------------GCA---G------------CAGACTTA--------------------------CAACCAACAG------------------------------------------------------------------------------GGCGC-----------------------------------AC------A------------------------------------------------------------------------------------------------AGTCACACTTA---GTGATCCCCAACAGCAACAACATC-----------C-----------------------CGC------------------------------A-TTCTCGGCCTTAC---CAACAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GCCGCCGCAGCAGCAGC---AACAGCGCCGCCT---------GCT--GC----------------------TGGACGCAAATTCGGGTAGTTAT------------------------------------------------------------------------------AAAACGGAAGCCACACTAACCAACAAT-----------C------------------------------------------------A----------CCACCAATT---------------------------CACGAACGCACC-------------------------------------------AGCTGGCAAGCTAAAGCAGCCTAACAACATTCG------------------------------------------------------------C---------AA-----CAACA---------------------------------------GCA---G------------CAGACTCA--------------------------GCAGCAACAT------------------------------------------------------------------------------GTTGC-----------------------------------AG------CGGCAACAC-----------------------------------------------------------------------TTGCAGC------------------------------------------------ATGCTCAAAGCTTTTATCTACACGAAA---------------------------------CACTCGACAATTCTTGTTACTACT--CTACACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-----------------------------------AG------CGGCAACAC-----------------------------------------------------------------------TTGCA..............................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
................................T---------GCT--GC----------------------TGGACGCAAATTCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAACAC-----------------------------------------------------------------------TTGCAGC------------------------------------------------ATGCTCAAAGCTT...............................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-----------------------------------AG------CGGCAACAC-----------------------------------------------------------------------TTGCAG.............................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
........................................................................GGACGCAAATTCGGGTAGTTAT------------------------------------------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................ACGCACC-------------------------------------------AGCTGGCAAGCTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGCTTTTATCTACACGA...................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..CGCCGCAGCAGCAGC---AACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111000000100000000000000000000000000000000000000000000000000000000
droMoj3
ACCGCCGCAGCAGCAGC---AACAGCGTCGCCT---------GTT--GC----------------------TGGACGCCAATTCGGGTAGTTAT------------------------------------------------------------------------------AAAACGGCAGCAGCACTAACCAACAAT-----------C------------------------------------------------ACCAATTCA---------------------------------------CCAACAAC-----------------------------------------GCACCTGCTGCCCAGCAAA---TGCTTAACAACAGCAA------------------------------------------------------------C---------AA-----CAACA------------------------GCAGCAGGGGCATCACCA---G------------------------------------------------------------------CAGCAGCAGCAACAGCAATAA--------------------------------------CAACAACCTGA---TG-------------------------------------------------------------------------------------------------------------------------TTGCCGC------------------------------------------------ATGCTCGTAGCTTTCATCTACACGAAACAACATTCAACAACAACAGCAACAA---------GAACAATAATACGTGTTACTACT--CGACACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CAACA------------------------GCAGCAGGGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------GCAGCAGGGGCATCACCA---..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................GCAA------------------------------------------------------------C---------AA-----CAACA------------------------GCAGCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................20160.061000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---G------------------------------------------------------------------CAGCAGCAGCAACAGC.......................................................................................................................................................................................................................................................................................................................................18200.051000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCA---G------------------------------------------------------------------CAGCAGCAGCAACAGC.......................................................................................................................................................................................................................................................................................................................................22200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAACAACAGCAACA.........................................18200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAA------------------------------------------------------------C---------AA-----CAACA------------------------G..............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droGri2
GCCGCCGCAGCAACACC---AACAACGTCGCCT---------GCT--GC----------------------TGGACTCCAATTCGGGTAGTTAT------------------------------------------------------------------------------AAAGCGGCAGCAGCACTAACCAACAAT-----------C------------------------------------------------A-----------------------------------------------CCAACAACAACGACA---AAAACAACAACAGCAACATAAACAAGACACCGCACACGCTGACGCGCTAA---AGCCTTACAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCAACAT------------------------------------------------------------------------------GTTGC-----------------------------------AG------CCGCAACAG-----------------------------------------------------------------------CTACAGC------------------------------------------------ATGCACAAAGCTTCTATCTACACGAAA---------------------------------CGCTCAATAATTCATGCTACTATT--CCACACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GGCGGCGCAGCAGCAAC---AACAGCAGCCACC---------ACC--GC----------------------CCAT----------------------------------GGGTGGTCCACCGGGAATGCAAGG------------------AGTACC------------------AC---------------------------------C------ACC---A------------------------------AC------------GC------------------------------------AGCAGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------AACA------------------ACAACAGCAGCAGCAACAGCAGCA---G------------------------------------------------------------------CAACAACAGCAGCAGCAACAG--------------------------------------CAGCAG-------------CAACAGCAGCAGCAACAAC--------AGCAACAACAG---------CAG---------------------CAACAGC----------------------------------------------------------------------------------------------------------CGCCATCAACTGGTAC---------------------------------ACCGCCACAGTGCTCGA---------CACCACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................GTCCACCGGGAATGCAAGG------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
......................................................................................................................ACCGGGAATGCAAGG------------------AGTACC------------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..........................................................................T----------------------------------GGGTGGTCCACCGGGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC----------------------------------------------------------------------------------------------------------CGCCATCAACTG.....................................................................1811.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAACTGGTAC---------------------------------ACCGCCACAGT.....................2411.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCA---G------------------------------------------------------------------CAACAACAGC.............................................................................................................................................................................................................................................................................................................................................27100.10101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAG--------------------------------------CAGCA.......................................................................................................................................................................................................................................................................................20200.10200020
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG-------------CAACAGCAGCAGCAACAAC--------AGC...........................................................................................................................................................................................................................................27100.10101000
...........................................................................................................................................................................................................................................................................................................................AGC----------------------------------------------------------------------------------------------------------------------------------------------------------AACA------------------ACAACAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG--------------------------------------CAGCAG-------------CAACAGCAGCA..............................................................................................................................................................................................................................................................20200.10200020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------CAACAGCAGCAGCAACAAC--------A.............................................................................................................................................................................................................................................22200.10200002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCA---G------------------------------------------------------------------CAACAACA...............................................................................................................................................................................................................................................................................................................................................22200.10200002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC--------AGCAACAACAG---------CAG---------------------CAA...............................................................................................................................................................................................22120.08100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAAC--------AGCAACAA......................................................................................................................................................................................................................................25150.07100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAG--------------------------------------CAGCAG-------------CAACAGCA.................................................................................................................................................................................................................................................................25170.06100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAG--------------------------------------CAGCAG-------------CAACAGC..................................................................................................................................................................................................................................................................24190.05101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCA---G------------------------------------------------------------------CAACAACAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................27190.05100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAG--------------------------------------CAGCAG-------------CAACAGC..................................................................................................................................................................................................................................................................21200.05100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAAC--------AGCAACA.......................................................................................................................................................................................................................................25200.05100100
...........................................................................................................................................................................................................................................................................................................................AGC----------------------------------------------------------------------------------------------------------------------------------------------------------AACA------------------ACAACAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAG--------------------------------------CA..........................................................................................................................................................................................................................................................................................19200.05100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCA---G------------------------------------------------------------------CAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................24200.05100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA---G------------------------------------------------------------------CAACAACAGCAG...........................................................................................................................................................................................................................................................................................................................................21200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAC--------AGCAACAACAG---------CAG---------------------CA................................................................................................................................................................................................23200.05100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCA---G------------------------------------------------------------------CAACAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................25200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACAG--------------------------------------C...........................................................................................................................................................................................................................................................................................19200.05100001
.....................................................................................................................................................................................................................................................................................................................AGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------AACA------------------ACAACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------ACAACAGCAGCAGCAACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
dp5
GCAACAGCAGCAGCAAC---AGCAGCAAG-----------------------------TTTTTGCTGT---C-------------------------------------------------------------AGCAGCATTAAAGTAAAAAGTGAAA---------------ACACATTAGCAGCA---------------------------------------------------------GTAACAGCAACAGTTG---CAACACC------------------------------------AACAACAACAACAACC---AAT-----------------------------------------------------------------G------------------------------------------------------------CAAC--------------ACCA------------------GCAGCA---------ACGCCAG------------------------------------------------------------------------CAGCAACAGCAACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCAGC----AGCAAAAAGCATGT-TAGAAAAG------------------------------------AACATCAAGAAG---------------------------------GAATCAACGCCACCGGCAACTACT--CCTAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................CAACAGTTG---CAACACC------------------------------------AACAACAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
ACAACAGCAACAGCAAC---AACAGCAACAGCA---------GCA--GCAGCAGCAAGTTTTTGCTGT---C-------------------------------------------------------------AGCAGCATTAAAGTAAAAAGTGAAA---------------ACACATTAGCAGCA---------------------------------------------------------GTAACAGCAACAGTTG---CAACACC------------------------------------AACAACAACAACAACT---AAT-----------------------------------------------------------------G------------------------------------------------------------CAACACCAGCAG-----CAACG------------------CCAGCA---------GCAACAGCA---G------------------------------------------------------------------CAGCAACAGCAACA------------------------------------------------------GTAGC-----------------------------------AG------CAGCAACAG-----------------------------------------------------------------------TAGCAGC----AGCAAAAAGCATGT-TAGAAAAG------------------------------------AACATCAAGAAG---------------------------------GAATCAACGCCACCGGCAACTACT--CCTAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............AAC---AACAGCAACAGCA---------GCA--GCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.071001000
...............AC---AACAGCAACAGCA---------GCA--GCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.051010000
................C---AACAGCAACAGCA---------GCA--GCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
..............AAC---AACAGCAACAGCA---------GCA--GC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
droAna3
ACAACAACAACAACAAC---AACAACAACTATA---------A-A--GA----------------------AAGAAACAAAAAGGAATAGAAAT-----------------------------------------------------------------------------CGAAACAGAAACAACA------------------------------------------------------------------------------------------------------------------------------ACAACAATC---GAC-----------------------------------------------------------------A------------------------------TAAACGTTGCAATCGGAGCCAAAGTCGCAGCAGCATCAGTAG-----CAACA------------------GCAGCA---------GCATCAGCAGCAG------------------------------------------------------------------CAACAGCAGCAGCAGCGGCGG-----------------------------------------AAGCAG----------AAGCGGTAGCATCAAC------------------------------------------------------------GCTACCAACAA-------------------------------------------------------------------------------CAACATC-----------------------------------AAC------------------------------AATAACAACAACAACA---ACAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAG-----CAACA------------------GCAGCA---------GCATCA................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----CAACA------------------GCAGCA---------GCATCAGCAGCAG------------------------------------------------------------------CAAC...................................................................................................................................................................................................................................................................................................................................................2920.501010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------GCAGCA---------GCATCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................2290.222000002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------GCATCAGCAGCAG------------------------------------------------------------------CAA....................................................................................................................................................................................................................................................................................................................................................19130.152200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------GCAGCA---------GCATCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000011
ACAACAACAACAACAAC---AACAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------GCAGCA---------GCATCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................20110.091000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAG------------------------------------------------------------------CAACAGCAGC.............................................................................................................................................................................................................................................................................................................................................21130.081010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-----CAACA------------------GCAGCA---------GCATCA................................................................................................................................................................................................................................................................................................................................................................................................................................19170.061000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----CAACA------------------GCAGCA---------GCATCA................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG------------------------------------------------------------------CAACAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................21200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAACAACAACA---ACAAC19200.051010000
droBip1
GC-GCAGCAACAACAAC---AACAACAATAAA---------------GA----------------------AAGAAA------------------------------------------------GCACAAGA--------------------------------------------------AACACAAA-------------------C--------------------------------------------------------------------------------------------------AACAACAACAACAACAATC----------------------------GCA----------------------------------C------------------------------AAAACGTTGCAATCGAAGCCAAAGTCGCAGCAGCAACAGTAG-----CAACA------------------ACAGCAGCATCAGCAGCAACAGCA---G------------------------------------------------------------------CAGCGGCGGCAGCAG-----------------------------------------------AAGCGGTAGC-AT---CGACGGCGGCAGCAACAAC--------AACAACAACAA---------TAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACAACAACA-----ATASizeHit CountTotal NormTotal
No Reads
droKik1
GCTACCACAGCTGCAAC---AGCAACAGCAGCA---------ACA--GC----------------------TAAA----------------------------------GCTACAACAGCTGCAAAAGCAGCA------------------AAAAAG------------------ACGGCTA------------------------------------------------------------------------CAA------------C------------------------------------AGCAGCAACGGT------------------GG-----------------------------------------------CAACAGCTA------------------------------------------------------------C---------AA-----CTGCAGCTGCAGTGGTATAAACAGCCACAGAAACTGCAACAGTTACA---A------------------------------------------------------------------CAACAGGTACAACAACT--------------------------------------------------------------------------------------------------------ACAC-----------------------------------------------------------------------CAGCAGCAGCTCCACCAACTCATACAGC---AGCAGCTACAAA--------------------------------------------------------------AA---------CTGCAACAACAAGTGCTACAACAACTGCAACSizeHit CountTotal NormTotal
No Reads
droFic1
G--GCAGCAGCAACATC---AC------TGCGT---------GCC------------------GTGCC---T-------------------------------------------------------------CGTATTTTTAAACGCAAACGTGATA---------------CGGTCCGAACAGCG---------------------------------------------------------ACCACCGCATCACCTT---TGAC-CC------------------------------------CGCAGCAACATC-------------------------------------------------------------------CAACAGTCG------------------------------------------------------------C---------AG-----CAGCA------------------GCAACAGTA------ACATCAGTA---ACCACAG------------------------------------------------------------CAACATCAGCAACAACAGCAACATCCAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC-----------------------------------------------------AACCACGCGAAG---------------------------------ATCGCGAC---TGGAGTTCATACT--TTACACSizeHit CountTotal NormTotal
No Reads
droEle1
GTCGCAGCAGCAGCAGC---AATTGCTCAGCCA---------GCA--GC----------------------AACA-------------------------------------------------------------------------------------GTCGCATC------------------A----------------------------CCAG-----------------------CAACAGCAGCAGCAAC--------------------ATGC-CGCCT------------------ACCAGCAGC---ACAA---TAT-----------------------------------------------------------------G------------------------------------------------------------TATG--------------CCCA------------------GCAGCAGCAGCAGCAACATCACCA---GCAGCAGCATCAGCAT-----------------------------------C-ACTTCCACCACCAGCAGCAACAGCAACAGCAGCAG--------------------------------------------------------------------------------------------CAA---------CA---------------------------GACG-----CATCATTCGCATCACCACGGTCATAGTCATGAC---------------------------------------------------------------------------------------------------------AACAGCAAC--------------ATGTCGCTGCC--C----TSizeHit CountTotal NormTotal
No Reads
droRho1
C--GCAGCAACAGCAAC---AAAGGCAACACTT---------A----AA---------------ATAA---CAGCAAC----------------------------------------------------AGA----------------AACGCCA-ATTGTCACAGCAACTGCAACAGCAGCAACAACAACCAAGAGG-----------C------GA-------------------------------CAAGCGG-----------TC------------------------------------AACAGTAGCAACAACAAGCGCTG-----------------------------------------------------------CAGTCG------------------------------------------------------------CAGC--------------AGCA------------------GCAGCAGCA------GCAGCTGCAGTAG---CAG------------------------------------------------------------CAGCAGCAGCAACGCTAGCGT--------------------------CGGCAGCGACGGCAGCAGCATGTCC-AA---AACAAGCAGCGGTAATC------------------------------CAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGCAGCAG----CAACACSizeHit CountTotal NormTotal
No Reads
droBia1
GCCG-TGCAGCAGCAGC---AACAGCAGCACGG---------GCA--GC----------------------ACCACC--------------------------------------------------------------------------------------------------------------------------------------------AC----AGTGCGGCCGCGGTGGCCGCTGCCGCTGCGGCAGCCG---CCGT-CC------------------------------------ATCAGCAGCAGCAGCA---GGT-----------------------------------------------------------------G------------------------------------------------------------CAGC--------------ACCA------------------GCAGCA------GCAACACCACCA---G------------------------------------------------------------------CAACAGCAGCAGCAGCACCAG-----------------------------------------CAGCAGGTGGCCGCCGTTGCCATGGCGGCCATGGCCAATTTGCTGCCGCAACAG---------CAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTGCTGCA---TCAGCSizeHit CountTotal NormTotal
No Reads
droTak1
GCAGCAACAGCAGCAGC---AACAAG--------------------------------TCTTTGTTGTTGCC----GCCA--ACAAAATGGTG-ATACCAGCA------------------------------------------------------------------------ACGGGAGCT------------------------------------------------------------------AC---AATCGCCGGTATACC------------------------------------AACAGCAACAACAACAGCTGCC-----------------------------------------------------------------G------------------------------------------------------------CCGAGTCAACAG-----CAAC----------------------GCA------GCAACATCAACA---G------------------------------------------------------------------CAGCAGCAACATATGCAA---------------C-----------------------ACCAGCAACATGTGC-TG---TTCCAGCCGCACCTACA-------AGCAACAACAACAA---------CAA--------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------------------------------------CAGCAGCAAC---CAGCACSizeHit CountTotal NormTotal
No Reads
droEug1
GCAGCAGCTGCAGTAGC---AGCAGCAGCAGCA---------GCA--AC-----------------------------------------------------------------------------------------------------------------------------------------GCT----------------------------AG--------------------------------CGTCG---------------------------------------------------------------------GCAGCGACGCCAG-----------------------------------------------CAGCA--------------------------------------------------------------------------------------------------------------------------TGTCCA------------------------AAACAAGCAGCGGGAATCCGAGTGCA-------------------------------------GCAGCAACACAAGCAGCAGCAGCAGCCGCT-----------GCAGCA----------------GCAGCAGCAGCAAGT-----------GCAACAAATG---------CCG---------------------CCAATGCCGCCGATTTCAGTGCGTTCGACTTTAACGATAGTTCCGAT---------------------------------------------------------------------------------------------------------AATTCCGACAC-------G-CCCCTGGTGCCACG---CCCACSizeHit CountTotal NormTotal
No Reads
dm3
GCAGCAGCAGCAGCAGC---AACAGGACCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------GCACCAACCTGCATCTGCAAATCCATCACCACCAC--------------------------------------------------C------------------------------------AACAGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------AGCA------------------GCAGCAGCAGCAGCAACAACAACA---G------------------------------------------------------------------CAACAGCAGCAACAGCAGCAGCAGCAAAAACAGCAGCAACATCATAT---------------------GCAGC-----------------------------------AG------CAGCAGCAG-----------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------AACAACCTTTGTCACCAC----CTCACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............GC---AACAGGACCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------GCACCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TGCATCTGCAAATCCATCACCAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GC---AACAGGACCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------GCACCAACCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CCAACCTGCATCTGCAAATCCATCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCATAT---------------------GCAGC-----------------------------------AG------CAGCAGCAG-----------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------...........................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCAGC---AACAGGACCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------GCACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATAT---------------------GCAGC-----------------------------------AG------CAGCAGCA...........................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GACCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------GCACCAACCTGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CAAC--------------------------------------------------------------------------------------------------------------------------------------------------------GCACCAACCTGCATCTGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TGCATCTGCAAATCCATCACCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................ACCTGCATCTGCAAATCCATCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TCACCACCAC--------------------------------------------------C------------------------------------AACAGCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................C--------------------------------------------------------------------------------------------------------------------------------------------------------GCACCAACCTGCATCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AC--------------------------------------------------------------------------------------------------------------------------------------------------------GCACCAACCTGCATCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------AACAACCTTTGTCACCAC----CTCAC2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------GCAGC-----------------------------------AG------CAGCAGCAG-----------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------AACAA......................23101.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCATAT---------------------GCAGC-----------------------------------AG------CAGCAGCAG-----------------------------------------------------------------------C-----------------------------------------------------------------------------------------------------------------------AAC........................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACAGGACCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------GCACCAACCTGCATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................ATCTGCAAATCCATCACCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCATAT---------------------GCAGC-----------------------------------AG------CAGCAGC............................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAAAAACAGCAGCAACA..............................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACAGCAGCAACATCATAT---------------------GCA................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................TCACCACCAC--------------------------------------------------C------------------------------------AACAGCAGCAGC----------------------------------------------------------------------------------------------------------------------------------------------------------AGCA------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------GCACCAACCTGCATCTGCAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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C--ACAGCAGCAGCAGC---AACAGAGGATGCAAATGCAGCAGCA--GCCGCA-----------------------------ACAGATTGTTGTAAACCAGCAAATACTCAGTGATCC------------------------------------------------------------------------------------------------------------------------------------TCAGCGATTG---CAGTACC------------------------------------TACAACAACAGCAGTT---AAT-----------------------------------------------------------------G------------------------------------------------------------CAAA--------------AACA------------------GCAACAGCAGCAGCAACAACAACA---G------------------------------------------------------------------CAGCAGCAGCAACAACAGCTA--------------------------GTGGGACCACAACAACAGCAAATCC-TT---ATACAACAGCAGCAAACAC--------CCCAACAACAG---------CAGATACTGCAGCAAAAACTCTCC--------------------------------AACGA-----------------------------------------------------------------------------------------------------------------------------TAA------------TCAGCAA----CAACAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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droSec2
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Female-body		V113
Male-body		V114
Embryo		V115
Head
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CC-ACAGCAGCAGCAGC---AA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.0810001
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droYak3
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Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
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..................................................................................................................ATC----------------TGCCGCATTT-----------------GT--------------------------TGG------------------------CCGGCAACG--------------------GTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AATGGCAACA---------------------------------------------------------------------------------------ATGTGGCAAG---TG....2411.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACACCAGCAGCAGCAGCAACA.........................................................................................................................................................................................................................................................................................................................................2520.50101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCAGCAGCAGCAGCAA...........................................................................................................................................................................................................................................................................................................................................21120.08100001000000
droEre2
GCTA-TGCCGCAGCAACAACATCAGCAACTCG-----------TT--TC----------------------GGGA--------------------------------------------------TCGCAAGT---------------------GATG---------------GCACCGCATCAGCA-----------------------------------------------------------------------------------TCAGCAACCTATTCAGATCCCAGTTCAGATGCAAGTTCCAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CTTCTGTGGCTCCTCAAAT---------------------------------------GCA---G------------CAGACTTA--------------------------CAACCAACAG------------------------------------------------------------------------------GGCGC-----------------------------------AC------A------------------------------------------------------------------------------------------------AGTCACACTTA---GTGATCCCCAACAGCAACAACATC-----------C-----------------------CGC------------------------------A-TTCTCGGCCTTAC---CAACACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---G------------CAGACTTA--------------------------CAACCAACAG------------------------------------------------------------------------------GGCGC-----------------------------------A..........................................................................................................................................................................................................................................2612.0021000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACATC-----------C-----------------------CGC------------------------------A-TTCTCGGC..............2411.0010100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------------------------CAACCAACAG------------------------------------------------------------------------------GGCGC-----------------------------------AC------A------------------------------------------------------------------------------------------------AGTCACAC..........................................................................................................................2811.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTA--------------------------CAACCAACAG------------------------------------------------------------------------------GGCGC-----------------------------------AC------A------------------------------------------------------------------------------------------------..................................................................................................................................2411.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA--------------------------CAACCAACAG------------------------------------------------------------------------------GGCGC-----------------------------------AC------A------------------------------------------------------------------------------------------------A.................................................................................................................................2211.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTA--------------------------CAACCAACAG------------------------------------------------------------------------------GGCGC-----------------------------------A..........................................................................................................................................................................................................................................2211.0010000100
.............................................................................................................................................................................................................................................................................................GATCCCAGTTCAGATGCAAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTA---GTGATCCCCAACAGCAAC..................................................................................................2111.0011000000
...................................................................................................................................GT---------------------GATG---------------GCACCGCATCAGCA-----------------------------------------------------------------------------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..........................................................................A--------------------------------------------------TCGCAAGT---------------------GATG---------------GCACCGCAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
......................CAGCAACTCG-----------TT--TC----------------------GGGA--------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.......................................................................................................................................................................................................................................................................................................................CAA-----------------------------------------------------------------------------------------------------------------------------------------------CTTCTGTGGCTCCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
................................................................................................................................................................................................................................................................................AGCAACCTATTCAGATCCCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
...........................ACTCG-----------TT--TC----------------------GGGA--------------------------------------------------TCGCAAGT---------------------GATG---------------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
...............................................................................................................................................................................ACCGCATCAGCA-----------------------------------------------------------------------------------TCAGCAACCTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...................................................................................................................................GT---------------------GATG---------------GCACCGCATCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---G------------CAGACTTA--------------------------CAACCAACAG------------------------------------------------------------------------------GGCG...............................................................................................................................................................................................................................................................................2411.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------CAACCAACAG------------------------------------------------------------------------------GGCGC-----------------------------------AC------A------------------------------------------------------------------------------------------------..................................................................................................................................1911.0010000100
..............AACAACATCAGCAACTCG-----------TT--TC----------------------GGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.............................................................................................................................................................................................................................................................................................................CAAGTTCCAACAA-----------------------------------------------------------------------------------------------------------------------------------------------CTTCTGTGGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..........................................................................................................................................................GATG---------------GCACCGCATCAGCA-----------------------------------------------------------------------------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000

Generated: 05/16/2015 at 11:56 PM