dvi_20937

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AACAGGCGAATCATTTAATGCCAAATGCAGCGCCAATCAAAATGATAACGGTAAATTAACGCAAGGCAATACAAACAAAACAATCAAAATTAATTGCATAAACAAACTACAATAAAACAATCAAAAAAAGAAAAAAAAATGCAATAGTTTTACATGAAAAGCACTTGAACAACTGCAGCGAGCAAGCGAGACGGACATACAATACCTCTCGCTCTAACTCTAGCAGCACTCGTATTAGTTTTTATCTGTTC ************************************************...........((((((....((...(((((...........(((((((.......................................))))))).)))))...))....)).)))).....(((..((......))....))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060663 160_0-2h_embryos_total	M028 head	GSM1528803 follicle cells	SRR060664 9_males_carcasses_total	SRR060665 9_females_carcasses_total	SRR060667 160_females_carcasses_total	SRR060669 160x9_females_carcasses_total	SRR060679 140x9_testes_total	SRR060682 9x140_0-2h_embryos_total	V116 male body	SRR060685 9xArg_0-2h_embryos_total	SRR060683 160_testes_total	SRR060671 9x160_males_carcasses_total
.............TTTAATGCCAAAAGCAGCGCCA........................................................................................................................................................................................................................	22	1	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0
AACAGGCGAATCATTTAATGCCA....................................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................GCCAATCAAAATGATAACGTCA......................................................................................................................................................................................................	22	2	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0
............ATTTAATGCCAAATGCAGCGCCAA.......................................................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................TTGAGCAACTGCAGCGAGCAA..................................................................	21	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.......GAATCATTTAATGCCAAATGCAGCGCC.........................................................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0
............ATTTAATGCCAAAAGCCGCGCCAATC.....................................................................................................................................................................................................................	26	2	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................ACCTCTCGCTCTAACTCTAGCAG.........................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0
........................ATGCAGCGCCAATCAAAAT................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
......CGAATCATTTAATGCCAAAA.................................................................................................................................................................................................................................	20	1	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................GCCAATCAAAATGATAACGTC.......................................................................................................................................................................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0
........................AAGCAGCGCCAATCAAAA.................................................................................................................................................................................................................	18	1	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0
....................................................................................................................................................................TTGAACAACGGGAGCGAGCGA..................................................................	21	3	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................CTCGTATCAGTTTTTATG.....	18	2	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GAAAAGCCCTTGAACAAG..............................................................................	18	2	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	1

TTGTCCGCTTAGTAAATTACGGTTTACGTCGCGGTTAGTTTTACTATTGCCATTTAATTGCGTTCCGTTATGTTTGTTTTGTTAGTTTTAATTAACGTATTTGTTTGATGTTATTTTGTTAGTTTTTTTCTTTTTTTTTACGTTATCAAAATGTACTTTTCGTGAACTTGTTGACGTCGCTCGTTCGCTCTGCCTGTATGTTATGGAGAGCGAGATTGAGATCGTCGTGAGCATAATCAAAAATAGACAAG ************************************************...........((((((....((...(((((...........(((((((.......................................))))))).)))))...))....)).)))).....(((..((......))....))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060670 9_testes_total	SRR060655 9x160_testes_total	SRR060659 Argentina_testes_total	M027 male body	SRR060658 140_ovaries_total	SRR060672 9x160_females_carcasses_total
...............................................................................................................................................................TTGTGAACTTGTTGACGTCG........................................................................	20	1	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................TGAACTTGTTGACGTCGA.......................................................................	18	1	2	1.00	2	0	0	2	0	0	0
...............................................................................................................................................................TTGTGAACTTGTTGACGTC.........................................................................	19	1	2	1.00	2	0	2	0	0	0	0
................................................................................................................................................................TGTGAACTTGTTGACGTC.........................................................................	18	1	2	1.00	2	2	0	0	0	0	0
............................................................................................................TGTTATTTTGTTAGTTATTT...........................................................................................................................	20	1	2	0.50	1	0	0	0	1	0	0
...............................................................................................................................................................TTGTGAGCTTGTTGACGTC.........................................................................	19	2	8	0.13	1	0	1	0	0	0	0
........................................................................TTTGTTTTGTTAGTATTAATT..............................................................................................................................................................	21	1	20	0.05	1	0	0	0	0	1	0
...................................................................................................AGTGTTTGATGTTATTTT......................................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_13049:22221801-22222051 +	dvi_20937	AACAGGCGAATCATTTAATGCCA------------------------------A------ATG---CAGCGCCAA-----------------TC-------------------------------------------------------------------AAAATGATAACG------GTAAA-TTAACG---CAA-G--GCAATACA-----------AACAAAACAATC----------------------------------------------------------------------------------------AAAATTAATTGCATAAACA-------AACTACAATAAAACAATCAAAAAAAGAAAAAA--AAATGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGTTTTACATGAAAAGCACTTGAACAACTGCAGCGAGCAAGCGAGACGGACATACAATACCTCTCGCTCTAACTCTAGCAGCACTCGTATTAGTT-------------------------------------------------------------------------------------------------TTTATCTGTTC
droMoj3	scaffold_6680:16829526-16829732 +		AGGCAACACACTAATAAACACCG------------------------------A------TAG---CAGAGTCCA-----------------TC-------------------------------------------------------------------AAAATGATAACGGTAATGATTA---------------G--GCCATACAAAAATATACGTAATTAAA----TATTA--ATGT------------------------------------CAAAGTAAAATAAAAATAAA----------------------------------------------------------------------------------TATTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGTTTTACGATAGCAGCACTTGAAAAAATACTGAGCGAGAGAGAGAGAGAGA---------------------------------------------A-----------------------------------------------------------------------A----CAGAGCGATAGCCTTATCTCTATCT-ATA
droGri2	scaffold_15110:21317703-21317880 -		AGCAGGCAAACCATTGAACAA---------------------------------C------------------AC-----------------TC-------------------------------------------------------------------AAAATGATAACG------GTAAA-TTAGTGAAT----------------------------------------------------------AAAACAATAGTGTTAATAAATG--------------------------------------------------------------------------------------CATCA-------------AATTTTGCAATA---AAAATAGTAGAGGCAACTGCATAT---CTATCTCTATCTCCA-TTGCACACACTTTCGCTGCTTACTATTTATGA----GTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCTCTCC
droWil2	scf2_1100000004776:18476-18639 -		AACAACAGCAGCAACA----------------------------------ACAACAGCAGCAG---CAACA------------------------------------------------------------------------------------------ACAGCAA--------------------------------------------------------------------------CA-----------------GCAACAACAACAG--------------------------------------------------------------------------------------CAGCA-------------ACAACAGCAACAGCAACAAC---AGCAGCAGCAGCAGCAACTGCAACAACAGCAG----------------------------------------------CAGCAACA--GCAACAACAACAACAT--------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAGCAACAACAGCA-----------------------------------------------------------------------A------------------------------CAA
dp5	XR_group6:3581897-3582052 -		AAAACGATAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAGGCTGATAAGCGAAAATG--------------TCGCAAAATAGATTCACAACA--AAGT------------------------------------CATAATCAAAATAAAGCAAA----------------------------------------------------------------------------------CATTGCAC-A---GATTATAC--------------AA---TTCTGCTTGT--C--CCTG------GGTGAACTCCTTTCTCGCTACAACTCTCTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTCTGTCT
droPer2	scaffold_9:1877759-1877914 -		AAAACGATAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAGACTGATAAGCGAAAATG--------------TCCCAAAATAGATTCACAACA--AAGT------------------------------------CATAATCAAAATAAAGCAAA----------------------------------------------------------------------------------CATTGCAC-A---GATTATAC--------------AA---TTCTGCTTGT--C--CCTG------GGTGAACTCCTCTCTCGCTACAACTCTCTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTCTGTCC
droAna3	scaffold_13248:1386904-1387029 -		AACAACAACAAGAACA----------------------------------ACAAGGA-------------------------------------------------------------------------------GCAAACTAACGGGTCATCCAGGCAGTAAACAA-------------------------------CA--CACTAAAC------------AAC--AAAC----------------------------------------------------------------------------------------AAAACAAAAAATAAAAACA-------AATTAAAGAAAAAGAGATAGAAAGAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAA-AGA
droBip1	scf7180000396413:1228129-1228203 -		AAACTAAATAAAT------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------ATTG---------------TATTTCAATAAAAC---------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAACACAAAAAACGA---------------------------------CAAAAATTAAATTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT
droKik1	scf7180000302461:1649135-1649318 -		AGCAGCAGCCGCAGCA----------------------------------GCAGCTATAGCTA---TAGCAATA--------------------GCAACAATTGGCGGATTGGTGG----------------------------------------------------------------CG--------------------------------------GACTGGAAACAAAGTGTGTGTT------------------------------------TAAACCGAACCGAAACAGAACAGCATAAACGGAAATAATTTA-------ATAA---------------TAATTACTGAAAGA---------------------------------------------------------------------------------------------------------------------------------AAAATTATGTAAGCATTAAACAT---------------------------------TAAAAGCTAGACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC
droFic1	scf7180000453925:730286-730453 -		AACAGGCAGCCCAATCAGTTCCGTGGCGCACTCAACGCGCTCAACCTGCCGCA-CAGCAGCAGCAACAGGAGTCGCATCCACAACCCATCTA--CAA-----CAATG---------TCCAGCAGCAGCAACAAAGATCTCGCGATGTTTT-----------------------------------------------------------------------------------------------------------------------------------CAGCC---------------------------------------------CG------GCA----------------------------------------------------------------------------------------------------------------------------------------------------AGGAATGAA-------------------------------------------------------------------------------------------------------------------------------------------------GCACCAGCAGCA-----------------------------------------------------------------------A------------------------------CCA
droEle1	scf7180000491102:23333-23537 +		AACAAAGAAACCAGCA----------------------------------GCAGCAGCAGCAGCAACAGCACCAG-----------------CA-------------------------------------------------------------------ACAACAACAACA----------------------------------------------------------------------------------------GCAACAAGCAACACAATAAAAATCA---------------------------------------------CA------GCA---------------------------------------------------ACCGA-------------------------------------------------------------------------------------------------AGAA-------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAACAACGCAGTGAAAGTGATAAAGCAGCAACAGCAGCAAAAACAACAACTGCCTAAAGCAACCAAAA-----ACAAAAACTACAATAGCAATAACAATAGCA-GCA
droRho1	scf7180000779270:8081-8158 -		CAAATCAAAAGCAAAA----------------------------------AGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATC----------------------------------------------------------------------------------------AAAACCAAACATAACAACT-------AAATCTAAAAAAACAAATCAAAAGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCA-AAA
droBia1	scf7180000302075:1116253-1116388 +		AACAGGCAAATCAAAA----------------------------------TTGAACGAAACAG---CAGGGCCA--------------------AAAATAAATAGCGGGCAAACGG----------------------------------------------------------------CCA---------------A--GTCACCTGAACAAC-----AACAGGCAACGGCAGCCGCAGT------------------------------------CGAAACGAAAATAAATAAAA----------------------------------------------------------------------------------CAACGAAC-A---AGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------A------------------------------CAA
droTak1	scf7180000415149:158513-158652 +		AACAGCAAAATCAACCAGGCCCAG-CTG-------------------------C------CAG---CA-------------------------------------------AAGCG-----------------------CGTTGATGTG-------------TGACAACAACG------GCCA---------------ATA--ACTACAAC------------AACAAATGCAACA--AAAT------------------------------------AGCAAACA---------------------------------------------CA------ACAACAA--------------------------------AACATTGCAACA---AGAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------AAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCA-ACA
droEug1	scf7180000409711:1201021-1201198 +		AGTAGTATCGACAACA----------------------------------GCAGCAGCAGCAG---CAACA------------------------------------------------------------------------------------------GAAACAA--------------------------------------------------------------------------CA-----------------ACAC----------------------------------------------------------------------------------TT-----------------------------------------------------------------------------TTGC--CAACCGA------GCCGGAACATTCTGTACCCGTAAGTACTTACCCTTCGCAAAAACAAAATACAAAACATAGAAAACAAAAAGGAAAACAAGAAAATACGGGAAAGAAAAAGAAAAGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTT-GCA
dm3	chr2L:5315249-5315314 -		TAAAGTAAAATATTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTTAATATACACAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAT-GAA
droSim2	x:6142662-6142769 +		AGCAGCCAAATCAGCAAAT---------------------------------AGCCTCAACAA---CTTGTCGA--------------------AAATCAAATGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACCAACA-------------------------------GCAG---AAACGAAA----CAAAAAGAAATGAAAAGAAAAG----AA----------------AAGAAAA-AGC
droSec2	scaffold_14:2040776-2040856 -		AACAAGGGCAGCGGCG----------------------------------ACGACGCGAGCAG---TTATT------------------------------------------------------------------------------------------ATAATAA--------------------------------------------------------------------------TG-----------------GCGT----------------------------------------------------------------------------------TAGTTGTTAGCATAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACA--------------------------------------------------------------------------------------------------ACA-ATC
droYak3	3L:3472319-3472445 +		AACCAACATGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAACA--------------TTTCAAATAAAATACACAACA--AAAAAATCGTAAAACCTACAAAAAATGTAACAAAAA--------------------------------------------------------------------------------------CATCAAAAAAAGATAAAA--AAAAGA-------------A-------------------------------------------------------------------------------------------------------------------------------------------------AATATACAAGAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC
droEre2	scaffold_4820:1808321-1808386 -		AAACTAAATAAAT------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------ATTG---------------TATTTGAATAAAAGAAACGAAAAAAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAATTACATTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AACAGGCGAATCATTTAATGCCA------------------------------A------ATG---CAGCGCCAA-----------------TC-------------------------------------------------------------------AAAATGATAACG------GTAAA-TTAACG---CAA-G--GCAATACA-----------AACAAAACAATC----------------------------------------------------------------------------------------AAAATTAATTGCATAAACA-------AACTACAATAAAACAATCAAAAAAAGAAAAAA--AAATGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAGTTTTACATGAAAAGCACTTGAACAACTGCAGCGAGCAAGCGAGACGGACATACAATACCTCTCGCTCTAACTCTAGCAGCACTCGTATTAGTT-------------------------------------------------------------------------------------------------TTTATCTGTTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
AACAGGCGAATCATTTAATGCCA------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ATTTAATGCCA------------------------------A------ATG---CAGCGCCAA-----------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......GAATCATTTAATGCCA------------------------------A------ATG---CAGCGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCTCGCTCTAACTCTAGCAG..........................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................ATG---CAGCGCCAA-----------------TC-------------------------------------------------------------------AAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......CGAATCATTTAATGCCA------------------------------A------AA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GCCAA-----------------TC-------------------------------------------------------------------AAAATGATAACG------TC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGGCAACACACTAATAAACACCG------------------------------A------TAG---CAGAGTCCA-----------------TC-------------------------------------------------------------------AAAATGATAACGGTAATGATTA---------------G--GCCATACAAAAATATACGTAATTAAA----TATTA--ATGT------------------------------------CAAAGTAAAATAAAAATAAA----------------------------------------------------------------------------------TATTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGTTTTACGATAGCAGCACTTGAAAAAATACTGAGCGAGAGAGAGAGAGAGA---------------------------------------------A-----------------------------------------------------------------------A----CAGAGCGATAGCCTTATCTCTATCT-ATA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTTTACGATAGCAGCACTTG.....................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................ATGATAACGGTAATGATTA---------------G--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...CAACACACTAATAAACACCG------------------------------A------TAG---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGAGAGA---------------------------------------------A-----------------------------------------------------------------------A----CAGA.........................	18	20	0.05	1	0	1	0	0	0	0

droGri2

AGCAGGCAAACCATTGAACAA---------------------------------C------------------AC-----------------TC-------------------------------------------------------------------AAAATGATAACG------GTAAA-TTAGTGAAT----------------------------------------------------------AAAACAATAGTGTTAATAAATG--------------------------------------------------------------------------------------CATCA-------------AATTTTGCAATA---AAAATAGTAGAGGCAACTGCATAT---CTATCTCTATCTCCA-TTGCACACACTTTCGCTGCTTACTATTTATGA----GTATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATCTCTCC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AACAACAGCAGCAACA----------------------------------ACAACAGCAGCAG---CAACA------------------------------------------------------------------------------------------ACAGCAA--------------------------------------------------------------------------CA-----------------GCAACAACAACAG--------------------------------------------------------------------------------------CAGCA-------------ACAACAGCAACAGCAACAAC---AGCAGCAGCAGCAGCAACTGCAACAACAGCAG----------------------------------------------CAGCAACA--GCAACAACAACAACAT--------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAGCAACAACAGCA-----------------------------------------------------------------------A------------------------------CAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......GCAGCAACA----------------------------------ACAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	3	0
..............................................................................................................................................................................................................................................................................ACAG--------------------------------------------------------------------------------------CAGCA-------------ACAACAGCAACAGC.................................................................................................................................................................................................................................................................................................................................................................................	23	7	0.14	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................CAACAACAACAG--------------------------------------------------------------------------------------CAGCA-------------ACAACA.........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	2	0
..................................................ACAACAGCAGCAG---CAACA------------------------------------------------------------------------------------------AC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2
......................................................CAGCAGCAG---CAACA------------------------------------------------------------------------------------------ACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
...................................................................................................................................................................AGCAA--------------------------------------------------------------------------CA-----------------GCAACAACAACAG--------------------------------------------------------------------------------------CAGCA-------------...............................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAACAACAGCA-----------------------------------------------------------------------A------------------------------...	23	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAT--------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACA.....................................................................................................................	19	20	0.10	2	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAT--------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAGCAACAA..............................................................................................................	23	17	0.06	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAACTGCA..................................................................................................................................................................................................................................................................................................................................................	22	17	0.06	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAT--------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAGC...................................................................................................................	23	18	0.06	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAT--------------------------------------------------------------------------------------------------------------------------------CAGCAGCAAC......................................................................................................................	24	19	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAT--------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACA.....................................................................................................................	25	19	0.05	1	0	1	0	0	0
....................................................................................................................................................................GCAA--------------------------------------------------------------------------CA-----------------GCAACAACAACAG--------------------------------------------------------------------------------------C................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG----------------------------------------------CAGCAACA--GC..............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAT--------------------------------------------------------------------------------------------------------------------------------CAGCAGC.........................................................................................................................	22	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAG----------------------------------------------CAGCAACA--GC..............................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
......AGCAGCAACA----------------------------------ACAACAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAG----------------------------------------------CAGCAACA--GC..............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA--GCAACAACAACAACAT--------------------------------------------------------------------------------------------------------------------------------CAGC............................................................................................................................	25	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAT--------------------------------------------------------------------------------------------------------------------------------CAGCAGCAAC......................................................................................................................	22	20	0.05	1	0	0	0	1	0
..CAACAGCAGCAACA----------------------------------ACAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....ACAGCAGCAACA----------------------------------ACAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAT--------------------------------------------------------------------------------------------------------------------------------CAGCAGCAAC......................................................................................................................	19	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................AA--------------------------------------------------------------------------CA-----------------GCAACAACAACAG--------------------------------------------------------------------------------------CAGCA-------------...............................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAAC---AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAACAAC---AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAAC---AGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................AA--------------------------------------------------------------------------CA-----------------GCAACAACAACAG--------------------------------------------------------------------------------------CAGCA-------------ACA............................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAAC---AGCAGCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................AACAACAG--------------------------------------------------------------------------------------CAGCA-------------ACAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................CAA--------------------------------------------------------------------------CA-----------------GCAACAACAACAG--------------------------------------------------------------------------------------CA...............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
...............A----------------------------------ACAACAGCAGCAG---CAACA------------------------------------------------------------------------------------------AC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0
...............A----------------------------------ACAACAGCAGCAG---CAACA------------------------------------------------------------------------------------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
....................................................AACAGCAGCAG---CAACA------------------------------------------------------------------------------------------ACAGCAA--------------------------------------------------------------------------CA-----------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0

dp5

AAAACGATAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAGGCTGATAAGCGAAAATG--------------TCGCAAAATAGATTCACAACA--AAGT------------------------------------CATAATCAAAATAAAGCAAA----------------------------------------------------------------------------------CATTGCAC-A---GATTATAC--------------AA---TTCTGCTTGT--C--CCTG------GGTGAACTCCTTTCTCGCTACAACTCTCTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTCTGTCT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................GATTATAC--------------AA---TTCTGCTTGT--.........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAAACGATAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAGACTGATAAGCGAAAATG--------------TCCCAAAATAGATTCACAACA--AAGT------------------------------------CATAATCAAAATAAAGCAAA----------------------------------------------------------------------------------CATTGCAC-A---GATTATAC--------------AA---TTCTGCTTGT--C--CCTG------GGTGAACTCCTCTCTCGCTACAACTCTCTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCTCTGTCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

AACAACAACAAGAACA----------------------------------ACAAGGA-------------------------------------------------------------------------------GCAAACTAACGGGTCATCCAGGCAGTAAACAA-------------------------------CA--CACTAAAC------------AAC--AAAC----------------------------------------------------------------------------------------AAAACAAAAAATAAAAACA-------AATTAAAGAAAAAGAGATAGAAAGAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAA-AGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............CA----------------------------------ACAAGGA-------------------------------------------------------------------------------GCAAACTAACGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
AACAACAACAAGAACA----------------------------------ACAAGGA-------------------------------------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................GCAAACTAACGGGTCATCCAGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................ACAAAAAATAAAAACA-------AA.............................................................................................................................................................................................................................................................................................................................................................................................................................	18	15	0.07	1	0	1	0	0	0	0

droBip1

AAACTAAATAAAT------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------ATTG---------------TATTTCAATAAAAC---------------------------------------------------------------------------------------------------------------------------------AAAAAAAAAAACACAAAAAACGA---------------------------------CAAAAATTAAATTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCAGCAGCCGCAGCA----------------------------------GCAGCTATAGCTA---TAGCAATA--------------------GCAACAATTGGCGGATTGGTGG----------------------------------------------------------------CG--------------------------------------GACTGGAAACAAAGTGTGTGTT------------------------------------TAAACCGAACCGAAACAGAACAGCATAAACGGAAATAATTTA-------ATAA---------------TAATTACTGAAAGA---------------------------------------------------------------------------------------------------------------------------------AAAATTATGTAAGCATTAAACAT---------------------------------TAAAAGCTAGACAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACAGGCAGCCCAATCAGTTCCGTGGCGCACTCAACGCGCTCAACCTGCCGCA-CAGCAGCAGCAACAGGAGTCGCATCCACAACCCATCTA--CAA-----CAATG---------TCCAGCAGCAGCAACAAAGATCTCGCGATGTTTT-----------------------------------------------------------------------------------------------------------------------------------CAGCC---------------------------------------------CG------GCA----------------------------------------------------------------------------------------------------------------------------------------------------AGGAATGAA-------------------------------------------------------------------------------------------------------------------------------------------------GCACCAGCAGCA-----------------------------------------------------------------------A------------------------------CCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACAAAGAAACCAGCA----------------------------------GCAGCAGCAGCAGCAACAGCACCAG-----------------CA-------------------------------------------------------------------ACAACAACAACA----------------------------------------------------------------------------------------GCAACAAGCAACACAATAAAAATCA---------------------------------------------CA------GCA---------------------------------------------------ACCGA-------------------------------------------------------------------------------------------------AGAA-------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAACAACGCAGTGAAAGTGATAAAGCAGCAACAGCAGCAAAAACAACAACTGCCTAAAGCAACCAAAA-----ACAAAAACTACAATAGCAATAACAATAGCA-GCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAAATCAAAAGCAAAA----------------------------------AGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATC----------------------------------------------------------------------------------------AAAACCAAACATAACAACT-------AAATCTAAAAAAACAAATCAAAAGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCA-AAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACAGGCAAATCAAAA----------------------------------TTGAACGAAACAG---CAGGGCCA--------------------AAAATAAATAGCGGGCAAACGG----------------------------------------------------------------CCA---------------A--GTCACCTGAACAAC-----AACAGGCAACGGCAGCCGCAGT------------------------------------CGAAACGAAAATAAATAAAA----------------------------------------------------------------------------------CAACGAAC-A---AGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------------A------------------------------CAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AACAGCAAAATCAACCAGGCCCAG-CTG-------------------------C------CAG---CA-------------------------------------------AAGCG-----------------------CGTTGATGTG-------------TGACAACAACG------GCCA---------------ATA--ACTACAAC------------AACAAATGCAACA--AAAT------------------------------------AGCAAACA---------------------------------------------CA------ACAACAA--------------------------------AACATTGCAACA---AGAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------AAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCA-ACA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGTAGTATCGACAACA----------------------------------GCAGCAGCAGCAG---CAACA------------------------------------------------------------------------------------------GAAACAA--------------------------------------------------------------------------CA-----------------ACAC----------------------------------------------------------------------------------TT-----------------------------------------------------------------------------TTGC--CAACCGA------GCCGGAACATTCTGTACCCGTAAGTACTTACCCTTCGCAAAAACAAAATACAAAACATAGAAAACAAAAAGGAAAACAAGAAAATACGGGAAAGAAAAAGAAAAGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTTT-GCA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TAAAGTAAAATATTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTTAATATACACAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAT-GAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................GAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAGATT..............................................................................................................................................................................................................................	18	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AAAGTAAAATATTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA..................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............TA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAGATT..............................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................A--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTTAATATACACAAA.................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TAGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAGATT..............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TATTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAA..................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAGA................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAGATT..............................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAT.................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAG.................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAGA................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................AA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTTAATATACACAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A..........	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------------------------------------------------------------------------------------AAAGATTTAATATACACAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATATACACAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAAT-GA.	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AAATATTTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAA.................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAA--AAATAC--------------------------------------------------------------------------------------------------------------------------------------------------A....................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGCAGCCAAATCAGCAAAT---------------------------------AGCCTCAACAA---CTTGTCGA--------------------AAATCAAATGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCACCAACA-------------------------------GCAG---AAACGAAA----CAAAAAGAAATGAAAAGAAAAG----AA----------------AAGAAAA-AGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................CTTGTCGA--------------------AAATCAAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AACAAGGGCAGCGGCG----------------------------------ACGACGCGAGCAG---TTATT------------------------------------------------------------------------------------------ATAATAA--------------------------------------------------------------------------TG-----------------GCGT----------------------------------------------------------------------------------TAGTTGTTAGCATAATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACA--------------------------------------------------------------------------------------------------ACA-ATC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AACCAACATGAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAAAAAAAACA--------------TTTCAAATAAAATACACAACA--AAAAAATCGTAAAACCTACAAAAAATGTAACAAAAA--------------------------------------------------------------------------------------CATCAAAAAAAGATAAAA--AAAAGA-------------A-------------------------------------------------------------------------------------------------------------------------------------------------AATATACAAGAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................AATCGTAAAACCTACAAAAAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AAACTAAATAAAT------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-------ATTG---------------TATTTGAATAAAAGAAACGAAAAAAGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAATTACATTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................................................................................................................................TTTGAATAAAAGAAACGA...........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0

dvi_20937

scaffold_13049:22221851-22222001 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads