ID:

dvi_20926

 Coordinate:

scaffold_13049:22169763-22169913 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.4 -21.7 -21.7

Flybase annnotation

exon [dvir_GLEANR_11415:1]; CDS [Dvir\GJ11371-cds]; intron [Dvir\GJ11371-in]

No Repeatable elements found

Sense Strand Reads

--------##########################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GACCAGCAATGCAGTCGACATTACGCAGAACTCTGACAGCTGTAGCCAAGGTACAAACACACAAACGGCTTTTATATGAAACGTACTCTCTCGAGGGGGGTTATGCAATTCTAACCTAAATAGGTCATAACTTTGGCATTAAATGCATTAGTCGATCGTTGTGACGTCAAAAACAGTGCGTACTCCAGTGTCAAGGTCGTTTATTAGGCCAATTATCAGCTGACACAGTTGATATAAACCCAAATTATAAT
*******************************************************************************..((((((((((...))))(((((........))))).......((((((((.(((((.............)))))..)))))))).........))))))*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060667
160_females_carcasses_total
 M047
female body
 M061
embryo
 SRR060679
140x9_testes_total
 M028
head
 SRR060664
9_males_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060666
160_males_carcasses_total
 GSM1528803
follicle cells		 M027
male body		 SRR060665
9_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060671
9x160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 V047
embryo
 V053
head
 V116
male body		 SRR060670
9_testes_total
..............................CTCTGACAGCTGTAGCCAAGA........................................................................................................................................................................................................ 21 1 1 7.00 7 1 0 1 0 0 2 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0
GACCAGCAATGCAGTCGAC........................................................................................................................................................................................................................................ 19 0 1 5.00 5 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............CGACATTACGCAGAACTCTGACAGCT.................................................................................................................................................................................................................. 26 0 1 3.00 3 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................CTCTGACAGCTGTAGCCAAGACACC.................................................................................................................................................................................................... 25 3 1 2.00 2 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................TCTGACAGCTGTAGCCAAGACACC.................................................................................................................................................................................................... 24 3 1 2.00 2 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................CTCTGACAGCTGTAGCCAA.......................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CTCTGACAGCTGTAGCCAAG......................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........CAGTCGACATTACGCAGAACT........................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............AGTCGACATTACGCAGAA............................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TCTGACAGCTGTAGCCAAGAC....................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................ACGCAGAACTCTGACAGCTGTAGC............................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGTGACGTCAAAAACAGTGCG....................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................ATTACGCAGAACTCTGACAGCTGG................................................................................................................................................................................................................ 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ACTCTGACAGCTGTAGCCAAGACAC..................................................................................................................................................................................................... 25 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......AATGCAGTCGACATTACGCA................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................AACGTACTCTCTCGAGGGGG........................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GGACTCCAGTGTCAAGGTC..................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................ACTCTGACAGCTGTAGCCAAGA........................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................GAACTCTGACAGCTGTAGCCA........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................ATTACGCAGAACTCTGACAGCTGTAGCC............................................................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................TTACGCAGCACTCTGACAGCTGTAGC............................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........ATGCAGTCGACATTACGCAGAACT........................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTGACAGCTGTAGCCAAGACACC.................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....GCAATGCAGTCGACATTACGCAGA.............................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ATTACGCAGAACTCTGACAGCTGT................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CTCTGACAGCTGTAGCCA........................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................TTACGCAGAACTCTGACAG.................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........ATGCAGTCGACATTACGCAGAACTCT......................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GCAATGCAGTCGACATTACGCA................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........ATGCAGTCGACATTACGCAGAA............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ACGCAGAACTCTGACAGCTGT................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................CTGACAGCTGTAGCCAAGACAC..................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CCAGCAATGCAGTCGACATTAC................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GCTCTAGCCAAGGTACAAACA................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TACGCAGAACTCTGACAGCTGT................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TACGCAGAACTCTGACAGCTGTAGCC............................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....AGCAATGCAGTCGACATTAC................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GAACTCTGACAGCTGTAGC............................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................GAACTCTGACAGCTGTAGCCAA.......................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GCAGTCGACATTACGCAGAA............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
GACCAGCAATGCAGTCGACATTACGCA................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........GCAGTCGACATTACGCAGAAC............................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................ACGCAGAACTCTGACAGCTGTA............................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............CGACATTGCGCAGAACTCTGACAGCT.................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTACTCCAGTGTCAAGGTCG.................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........TGCAGTCGACATTACGCAGAACTCTG........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TTACGCAGAACTCTGACAGCTGT................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................AACTCTGACAGCTGTAGCCA........................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...CAGCAATGCAGTCGACATTACGCA................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TGACAGCTGTAGCCAAGGTAATC................................................................................................................................................................................................... 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTGGTCGTTACGTCAGCTGTAATGCGTCTTGAGACTGTCGACATCGGTTCCATGTTTGTGTGTTTGCCGAAAATATACTTTGCATGAGAGAGCTCCCCCCAATACGTTAAGATTGGATTTATCCAGTATTGAAACCGTAATTTACGTAATCAGCTAGCAACACTGCAGTTTTTGTCACGCATGAGGTCACAGTTCCAGCAAATAATCCGGTTAATAGTCGACTGTGTCAACTATATTTGGGTTTAATATTA
***********************************************************************..((((((((((...))))(((((........))))).......((((((((.(((((.............)))))..)))))))).........))))))******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M027
male body		 M047
female body
 SRR060678
9x140_testes_total
 V116
male body		 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
..........CGTCAGCTGTAATGCGTCTTG............................................................................................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0
.TGGTCGTTACGTCAGCTGTAA..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
..............AGCTGTAGTGCGTCTTGAGA......................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................................................................................................................GGTTAATAGTCGACTGTGTCG...................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................TTTACGTAATCAGCTAGCAAC.......................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
.....CGCTACTTCAGCTGAAATG................................................................................................................................................................................................................................... 19 3 15 0.13 2 0 0 0 0 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:22169713-22169963 - dvi_20926 G------ACCAGCAATGCAGTCGACATTACGCAGAACTCTGACAGCTGTAGCCAAGGTACAAACACACAAACG--GCTTTTATATGAAA------------------CGTA-CT-CT-CTCGA------GGGGGGTTATGCAATTCTAACCTAAATA-----GG---TCA------TAACTTTGGCA-TT-----------AAATGCATT-----------AGT---CGATCGTTGTGACGTCAAAAA-----------------------------------------------------------CAG----------TGCGTACTCCAGTGTCAAGGTCGTTTATTAGGCCAATTATCAGCTGACAC--AGTTGATATAAACCCAAATT-ATAAT--
droMoj3 scaffold_6680:16768348-16768594 - T------TACAGCAATGCAATCCACACTACGCAGAACTGTGACAGCTGTGGCCAAGGTACAAAGAT----------ATAAA-CCCACTT-----CAC-----CAG-C---T-TAGTTCAATTG----------GGTTATGCAATTCTAACCTAAATA-----GG---TCA------TAACTTTCGCA-TT-----------AAATGCATT-----------AGTAGTCGATCATAGTGACGTCGCAAA-----------------------------------------------------------CTG----------TGCGTATTCGAATGTCAAGGTCGTATATTAGACCAATTATCAGCTGACAC--AGTTGTGATAAAGCCAAATG-ATTAT--
droGri2 scaffold_15110:21377799-21378041 + G------ACCAGCGATGCAGTCGACATTACGCAGAACAGTGACAGCTGTAGCCAAGGTACAAAGGCA-ATCAA--AATA-----AAATT------------------------CACT-TCTCATTTTTGGGGGGGTTATGCAATTCTAACCTAAATA-----GG---TCA------TAACTTTGCCA-TT-----------AAATGCAAT-----------CGT-------------GTTGTCCAAAA-----------------------------------------------------------TTGTTTGTGTATGT----GTGTAAATGTCAAGGCCATTGATTAGACCACTTAACAGCTGATG--CGACTGAATT-AGGCTAAATGAACAAG--
droWil2 scf2_1100000004762:3451507-3451581 + ----------AGAAATGCAGTCGACGCTACGACAGGTTGTGACGGCAGTAGCCAAGGTAAGAGA----------------------------------------------------------A----------GGTTATGCAATCTTAACCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:10714393-10714666 + --------CCAGCCATGCAGTCGACGCTACGACAAGCTGTCTCGGCGGTTGCCAAGGTACGGATT------C----------TACGATT------------------CCTA-TT-CC-CCCAA----------AGTTATGCAAT-CTAACCTATGTA-----TGTGGCGGGGCCCAAGAACTGG------------CT--AAAATGCAATAACTATGCTTTCATCTGCGAGCGCAGTGCAGCTGCAGATGGCTCCCAAGACTA------ACGCAATGGCCTCACGATTCCAC-GCTA----------------------------CCTGAGATTTCAAGTTCACCAATTGG-CCTAGTATCAGCTGATACGTGA-----------TCAGC-G-ATTAG--
droPer2 scaffold_20:626804-627077 + --------CCAGCCATGCAGTCGACGCTACGACAAGCTGTCTCGGCGGTTGCCAAGGTACGGATT------C----------TACGATT------------------CCTA-TT-CC-CCCAA----------AGTTATGCAAT-CTAACCTATGTA-----TGTGGCGGGGCCCAAGAACTGG------------CT--AAAATGCAATAACTATGCTTTAATCTGCGAGCGCAGTGCAGCTGCAGATGGCTCCCAAGACTA------ACGCAATGGCCTCACGATTCCAC-GCTA----------------------------CCTGAGATTTCAAGTTCGGCAATTGG-CCTAGTATCAGCTGATACGTGA-----------TCAGC-G-ATTAG--
droAna3 scaffold_13337:5339391-5339503 - -------ACCAGCCATGCAGTCCACACTTCGACAAGTTGTTTCGTCCGTAGCCAAGGTAGGAAATCGAATCAG--GCCATT-ACCGATT------------------------CACC-CCCCA----------AGTTATGCAAT-CTAACCTCACTGG-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396371:665580-665628 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATACGCGG-----------CCAGA-G-AT-----
droKik1 scf7180000302626:262879-262934 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCAAGGTCGCTAATTGGGCCAATTAGCAGCTGATACGCGG-----------CCGGA-G-ATTAGTG
droFic1 scf7180000454107:1439388-1439448 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCGTTTTCAAGGTTGCTAATTGGGCCAATTATCAGCTGATAGGCGG-----------TCGGA-G-ATTAATG
droEle1 scf7180000490993:763041-763328 + -------ACCAGCCATGCAGTCCACGCTTCGTCATGTTGTGTCGGCAGTAGCCAAGGTAAAAATC------GGGCGATGCA-GCAGATT-----CAC-----CAATCGTTTTTCGCC-CCCGA----------AGTTATGCAAT-CTAACCTCACCGA-GGGGG---TCG------CAAAATGGGCA-GGAAAAGCCTGGAAAATGCATT-----------GGT-------------A----------TCCTCTGCAGTGCTCATATGATCGCAGTGGCT----GAATCACTGGCGACTTAAGGGATTTGTTTGG-----------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATATGCGG-----------CCGGA-G-ATTA---
droRho1 scf7180000779490:162035-162322 + -------ACCAGCCATGCAGTCCACGCTTCGACATGTTGTGTCGGCAGTAGCCAAGGTAAAAATC------GGCCGATACT-GCCGATT-----CAC-----CAATCGCCTTTCGCC-CCCCA----------AGTTATGCAAT-CTAACCTCACCGAAGGGGG---CCC------TGAAATGGGCA-GGAAAAGCCTGGAAAATGCACT-----------TGG-------------A----------TCACCTGCAGTGCTCATATGATCGCAGTGGGT----GAATCACTGGCG-TCTGGCGGATTTGTTTGG-----------CCCCGCTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATATGCGG-----------CCGGA-G-ATTA---
droBia1 scf7180000302193:1164260-1164558 + CGCCCGCTCCAGCCATGCAGTTCACGCTCCGCCATGTCGTGTCGGCAGTAGCCAAGGTAAAGACC------GCAGGATGTT-GGGGATT-----CCGCTTTGCGAACGCCTTTCGCCCCCCCA----------AGTTATGCAAT-CTAACCTCACCGA-GGGGG---CCG------TGAAATGGGCA-GGAAAAGCCTGGAAAACGCAGC-----------TGG-------------A----------TCGCCTGCAGCGCTCATATGATCGCGGCG-GT----GAATCACTGGCG-TCTGGGGGATTTGTTTGG-----------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATCATCAGCTGATAGGCGG-----------CCGGA-G-ATTA---
droTak1 scf7180000415794:92359-92626 + -------ACCAGCCATGCAGTCCACGCTTCGCCATGTTGTGTCGGCAGTAGCCAAGGTAAGGATC------GGGC-ATACC-ACCGATTGCAATCCC-----CAAACGCCTTTCGCC-CCCCA----------AGTTATGCAAT-CTAACCTCACCGA-GGGGG---TCG------TGAAATGGGCCTGGAAAAGCCCGGAAAATGCACC-----------TGG-------------C----------CCACCTGCAGTGCTCATATGATC-----------------------------GGGGGATTTGTTTGG-----------CCCCGCTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATAGGCGG-----------CCGGA-G-ATTA---
droEug1 scf7180000409471:1708298-1708580 - -------ACCAGCCATGCAGTCCACGCTTCGACATGTTGTGTCCGCAGTAGCCAAGGTAAAGATC------GGACGATATT-GTCAATT-----CCC-----CAAACACCTTTCGCC-CCCCA----------AGTTATGCAAT-CTAACCTCACCGA-AG-GG---TCG-----------TGGGCA-GGAAAAGCCTGGAATATGCACT-----------TAG-------------A----------TCACTTGCAGTGCTCATATGATCGCA-TACTT----GAATCACTGGCG-TTTGGGGGATTTGTTTGG-----------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATAGGCGG-----------CCAGA-G-ATTAGTA
dm3 chr3L:17840517-17840574 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCGTTTTCAAGGTCGCTAATTAGGCCAATTATCAGCTGATAGTCGG-----------CCGAA-G-ATTA---
droSim2 3l:17419977-17420024 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATAGTCGG--------------------------
droSec2 scaffold_0:9886297-9886344 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATAGTCGG--------------------------
droYak3 3L:16213500-16213614 - -------ACCAGCCATGCAGTTCACGCTCCGTCATGTTGTTTCGGCAGTAGCCAAGGTAAGGATC------GGGAGACATA-ACAGATT-----CCC-----CAAACGCCA-TCGCC-CCTCA----------AGTTATGCAAT-CTAACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4784:16023607-16023892 - -------ACCAGCAATGCAGTTCACGCTCCGTCATGTTGTTTCGGCAGTAGCCAAGGTAAGGAAT------GGGAGACATA-ACCGATT-----CCC-----CAAACGCCA-TCGCC-CCTCA----------AGTTATGCAAT-CTAACCTCACCGA-GGGGG---TCG------AGATATGGGCA-GGAAAAGGCTGGAAAATGCACT-----------TGG-------------A----------TCACCTGCAGTGCTCATATGATCCCAGTGGGT----GAATCACTGGCG-TTTGGGGGATTTGTTTGG-----------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATAGTCGG-----------CCGAA-A-GTTA---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
G------ACCAGCAATGCAGTCGACATTACGCAGAACTCTGACAGCTGTAGCCAAGGTACAAACACACAAACG--GCTTTTATATGAAA------------------CGTA-CT-CT-CTCGA------GGGGGGTTATGCAATTCTAACCTAAATA-----GG---TCA------TAACTTTGGCA-TT-----------AAATGCATT-----------AGT---CGATCGTTGTGACGTCAAAAA-----------------------------------------------------------CAG----------TGCGTACTCCAGTGTCAAGGTCGTTTATTAGGCCAATTATCAGCTGACAC--AGTTGATATAAACCCAAATT-ATAAT--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................CTCTGACAGCTGTAGCCAAGA.......................................................................................................................................................................................................................................................................................................................................................2117.007000100000000002001100020000000000000000000000000000000000000000
G------ACCAGCAATGCAGTCGAC.......................................................................................................................................................................................................................................................................................................................................................................................1915.005000000000000000103100000000000000000000000000000000000000000000
.....................CGACATTACGCAGAACTCTGACAGCT.................................................................................................................................................................................................................................................................................................................................................................2613.003000000000000000000000000000002000000000000000000000000000000001
....................................CTCTGACAGCTGTAGCCAA.........................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000100000000001000000000000000000000000000000000
....................................CTCTGACAGCTGTAGCCAAG........................................................................................................................................................................................................................................................................................................................................................2012.002000100000000000000100000000000000000000000000000000000000000000
.................CAGTCGACATTACGCAGAACT..........................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................AGTCGACATTACGCAGAA............................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.....................................TCTGACAGCTGTAGCCAAGAC......................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
............................ACGCAGAACTCTGACAGCTGTAGC............................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TGTGACGTCAAAAA-----------------------------------------------------------CAG----------TGCG............................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.........................ATTACGCAGAACTCTGACAGCTGG...............................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
.............AATGCAGTCGACATTACGCA...............................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................AA------------------CGTA-CT-CT-CTCGA------GGGGG..........................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................ACTCTGACAGCTGTAGCCAAGA.......................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.................................GAACTCTGACAGCTGTAGCCA..........................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
.........................ATTACGCAGAACTCTGACAGCTGTAGCC...........................................................................................................................................................................................................................................................................................................................................................2811.001100000000000000000000000000000000000000000000000000000000000000
..............ATGCAGTCGACATTACGCAGAACT..........................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
...........GCAATGCAGTCGACATTACGCAGA.............................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................ATTACGCAGAACTCTGACAGCTGT...............................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
....................................CTCTGACAGCTGTAGCCA..........................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
..........................TTACGCAGAACTCTGACAG...................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000010000000000000000000000000000000000000000000
..............ATGCAGTCGACATTACGCAGAACTCT........................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
...........GCAATGCAGTCGACATTACGCA...............................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............ATGCAGTCGACATTACGCAGAA............................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
............................ACGCAGAACTCTGACAGCTGT...............................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
........CCAGCAATGCAGTCGACATTAC..................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
...........................TACGCAGAACTCTGACAGCTGT...............................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
...........................TACGCAGAACTCTGACAGCTGTAGCC...........................................................................................................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
..........AGCAATGCAGTCGACATTAC..................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.................................GAACTCTGACAGCTGTAGC............................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
.................................GAACTCTGACAGCTGTAGCCAA.........................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
................GCAGTCGACATTACGCAGAA............................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
G------ACCAGCAATGCAGTCGACATTACGCA...............................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................GCAGTCGACATTACGCAGAAC...........................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
............................ACGCAGAACTCTGACAGCTGTA..............................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GTACTCCAGTGTCAAGGTCG.........................................................2011.001000000000000000000000000000010000000000000000000000000000000000
...............TGCAGTCGACATTACGCAGAACTCTG.......................................................................................................................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
..........................TTACGCAGAACTCTGACAGCTGT...............................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
..................................AACTCTGACAGCTGTAGCCA..........................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.........CAGCAATGCAGTCGACATTACGCA...............................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.......................................TGACAGCTGTAGCCAAGGTAATC..................................................................................................................................................................................................................................................................................................................................................2320.501000000000000000000001000000000000000000000000000000000000000000
droMoj3
T------TACAGCAATGCAATCCACACTACGCAGAACTGTGACAGCTGTGGCCAAGGTACAAAGAT----------ATAAA-CCCACTT-----CAC-----CAG-C---T-TAGTTCAATTG----------GGTTATGCAATTCTAACCTAAATA-----GG---TCA------TAACTTTCGCA-TT-----------AAATGCATT-----------AGTAGTCGATCATAGTGACGTCGCAAA-----------------------------------------------------------CTG----------TGCGTATTCGAATGTCAAGGTCGTATATTAGACCAATTATCAGCTGACAC--AGTTGTGATAAAGCCAAATG-ATTAT--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................TAGTGACGTCGCAAA-----------------------------------------------------------CTG----------TGCG............................................................................2212.002002000
....................................CTGTGACAGCTGTGGCCAA.........................................................................................................................................................................................................................................................................................................................................................1912.002200000
..............................................................................AAA-CCCACTT-----CAC-----CAG-C---T-TAG.............................................................................................................................................................................................................................................................................................2111.001100000
..............ATGCAATCCACACTACGCAG..............................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................AACTGTGACAGCTGTGGCCA..........................................................................................................................................................................................................................................................................................................................................................2011.001000100
...........GCAATGCAATCCACACTACGCA...............................................................................................................................................................................................................................................................................................................................................................................2211.001100000
............................ACGCAGAACTGTGACAGCTGTGGCCA..........................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................AGAACTGTGACAGCTGTGGCC...........................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......TACAGCAATGCAATCCACACTACGCAGAA............................................................................................................................................................................................................................................................................................................................................................................2911.001100000
....................................CTGTGACAGCTGTGGCCAAGA.......................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................ATCCACACTACGCAGAACTGTGAC.....................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................................ACTGTGACAGCTGTGGCCAA.........................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........................TACGCAGAACTGTGACAGC..................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droGri2
G------ACCAGCGATGCAGTCGACATTACGCAGAACAGTGACAGCTGTAGCCAAGGTACAAAGGCA-ATCAA--AATA-----AAATT------------------------CACT-TCTCATTTTTGGGGGGGTTATGCAATTCTAACCTAAATA-----GG---TCA------TAACTTTGCCA-TT-----------AAATGCAAT-----------CGT-------------GTTGTCCAAAA-----------------------------------------------------------TTGTTTGTGTATGT----GTGTAAATGTCAAGGCCATTGATTAGACCACTTAACAGCTGATG--CGACTGAATT-AGGCTAAATGAACAAG--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
----------AGAAATGCAGTCGACGCTACGACAGGTTGTGACGGCAGTAGCCAAGGTAAGAGA----------------------------------------------------------A----------GGTTATGCAATCTTAACCTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................GACAGGTTGTGACGGCAGT...............................................................................................................................................................................................................................................................................................................................................................1917.00700340
.........................GCTACGACAGGTTGTGACGGCAGT...............................................................................................................................................................................................................................................................................................................................................................2413.00300120
..........................CTACGACAGGTTGTGACGGCAGT...............................................................................................................................................................................................................................................................................................................................................................2312.00200110
.............................CGACAGGTTGTGACGGCAGT...............................................................................................................................................................................................................................................................................................................................................................2012.00200011
................................CAGGTTGTGACGGCAGTAGCC...........................................................................................................................................................................................................................................................................................................................................................2112.00210010
......................GACGCTACGACAGGTTGTGACGGCAGT...............................................................................................................................................................................................................................................................................................................................................................2712.00202000
.....................CGACGCTACGACAGGTTGTGA......................................................................................................................................................................................................................................................................................................................................................................2111.00100010
...............................ACAGGTTGTGACGGCAGTAGC............................................................................................................................................................................................................................................................................................................................................................2111.00100100
............................ACGACAGGTTGTGACGGCAGT...............................................................................................................................................................................................................................................................................................................................................................2111.00100001
................................CAGGTTGTGACGGCAGTAGCCAAGA.......................................................................................................................................................................................................................................................................................................................................................2511.00100010
......................................GTGACGGCAGTAGCCAAGAC......................................................................................................................................................................................................................................................................................................................................................2011.00110000
..........AGAAATGCAGTCGACGCTACGA................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..........AGAAATGCAGTCGACGCT....................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
............................ACGACAGGTTGTGACGGCAGG...............................................................................................................................................................................................................................................................................................................................................................2111.00110000
......................GACGCTACGACAGGTTGT........................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.....................CGACGCTACGACAGGTTGTGACGGCAGT...............................................................................................................................................................................................................................................................................................................................................................2811.00100100
...............................ACAGGTTGTGACGGCAGTAGCCAAGACT.....................................................................................................................................................................................................................................................................................................................................................2811.00100010
.........................GCTACGACAGGTTGTGACGGCAGTA..............................................................................................................................................................................................................................................................................................................................................................2511.00101000
................GCAGTCGACGCTACGACAGGTTGTGAC.....................................................................................................................................................................................................................................................................................................................................................................2711.00100010
..................................GGTTGTGACGGCAGTAGCCAAGA.......................................................................................................................................................................................................................................................................................................................................................2311.00100010
............................ACGACAGGTTGTGACGGCAGTAGCCAAGA.......................................................................................................................................................................................................................................................................................................................................................2911.00100010
....................................TTGTGACGGCAGTAGCCAAGACT.....................................................................................................................................................................................................................................................................................................................................................2311.00100010
..................AGTCGACGCTACGACAGGT...........................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...........................TACGACAGGTTGTGACGG...................................................................................................................................................................................................................................................................................................................................................................1811.00100010
............AAATGCAGTCGACGCTACG.................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
.................................AGGTTGTGACGGCAGTAGC............................................................................................................................................................................................................................................................................................................................................................1911.00100010
...........................TACGACAGGTTGTGACGGC..................................................................................................................................................................................................................................................................................................................................................................1911.00100010
........................CGCTACGACAGGTTGTGACGGCAGT...............................................................................................................................................................................................................................................................................................................................................................2511.00100010
.....................CGACGCTACGACAGGTTGT........................................................................................................................................................................................................................................................................................................................................................................1911.00100010
dp5
--------CCAGCCATGCAGTCGACGCTACGACAAGCTGTCTCGGCGGTTGCCAAGGTACGGATT------C----------TACGATT------------------CCTA-TT-CC-CCCAA----------AGTTATGCAAT-CTAACCTATGTA-----TGTGGCGGGGCCCAAGAACTGG------------CT--AAAATGCAATAACTATGCTTTCATCTGCGAGCGCAGTGCAGCTGCAGATGGCTCCCAAGACTA------ACGCAATGGCCTCACGATTCCAC-GCTA----------------------------CCTGAGATTTCAAGTTCACCAATTGG-CCTAGTATCAGCTGATACGTGA-----------TCAGC-G-ATTAG--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................GCAGTCGACGCTACGACAAGCTG.........................................................................................................................................................................................................................................................................................................................................................................2312.0020200000000
...............TGCAGTCGACGCTACGACAAGCTGTC.......................................................................................................................................................................................................................................................................................................................................................................2612.0020200000000
...............TGCAGTCGACGCTACGACA..............................................................................................................................................................................................................................................................................................................................................................................1912.0020100010000
...............................................GTTGCCAAGGTACGGATT------C----------TA............................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................GCTGTCTCGGCGGTTGCCAA.........................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................CGCTACGACAAGCTGTCTC.....................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............................GACAAGCTGTCTCGGCGGTTGCCAAG........................................................................................................................................................................................................................................................................................................................................................2611.0010000001000
.........................GCTACGACAAGCTGTCTCGGCGGTTGCC...........................................................................................................................................................................................................................................................................................................................................................2811.0010001000000
.............................CGACAAGCTGTCTCGGCGGTTGCCA..........................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........................TACGACAAGCTGTCTCGGC..................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................................................................................................CTGCGAGCGCAGTGCAGCTGC...........................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................A------ACGCAATGGCCTCACGATTCCAC-GC.........................................................................................................2611.0010100000000
........................CGCTACGACAAGCTGTCTCGGC..................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
...............................ACAAGCTGTCTCGGCGGTTGCCAAGA.......................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.............CATGCAGTCGACGCTACGACAAGCTGTC.......................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
....................................CTGTCTCGGCGGTTGCCAAGACT.....................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.........................GCTACGACAAGCTGTCTCGG...................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................TACGACAAGCTGTCTCGGCGGTTGCC...........................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.............................CGACAAGCTGTCTCGGCGGTTGCC...........................................................................................................................................................................................................................................................................................................................................................2411.0010001000000
................................CAAGCTGTCTCGGCGGTTGCC...........................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................CTACGACAAGCTGTCTCGG...................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............................GACAAGCTGTCTCGGCGGG...............................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
..................................AGCTGTCTCGGCGGTTGCC...........................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.....................CGACGCTACGACAAGCTGT........................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
..........AGCCATGCAGTCGACGCTACGACAAGCT..........................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
........................CGCTACGACAAGCTGTCTCGG...................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................AAGCTGTCTCGGCGGTTGCCAA.........................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
............................ACGACAAGCTGTCTCGGCGGTTG.............................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
--------CCAGCCATGCAGTCGACGCTACGACAAGCTGTCTCGGCGGTTGCCAAGGTACGGATT------C----------TACGATT------------------CCTA-TT-CC-CCCAA----------AGTTATGCAAT-CTAACCTATGTA-----TGTGGCGGGGCCCAAGAACTGG------------CT--AAAATGCAATAACTATGCTTTAATCTGCGAGCGCAGTGCAGCTGCAGATGGCTCCCAAGACTA------ACGCAATGGCCTCACGATTCCAC-GCTA----------------------------CCTGAGATTTCAAGTTCGGCAATTGG-CCTAGTATCAGCTGATACGTGA-----------TCAGC-G-ATTAG--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................CGACGCTACGACAAGCTGT........................................................................................................................................................................................................................................................................................................................................................................1913.003102000
..................................AGCTGTCTCGGCGGTTGCCA..........................................................................................................................................................................................................................................................................................................................................................2012.002020000
..........................CTACGACAAGCTGTCTCGGC..................................................................................................................................................................................................................................................................................................................................................................2012.002200000
...........................TACGACAAGCTGTCTCGGC..................................................................................................................................................................................................................................................................................................................................................................1912.002200000
..........................CTACGACAAGCTGTCTCGGCG.................................................................................................................................................................................................................................................................................................................................................................2111.001001000
.............................CGACAAGCTGTCTCGGCGGTTGCCAA.........................................................................................................................................................................................................................................................................................................................................................2611.001010000
................................CAAGCTGTCTCGGCGGTTGCC...........................................................................................................................................................................................................................................................................................................................................................2111.001010000
.....................CGACGCTACGACAAGCTGG........................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..................................AGCTGTCTCGGCGGTTGCC...........................................................................................................................................................................................................................................................................................................................................................1911.001010000
......................GACGCTACGACAAGCTGT........................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..............................GACAAGCTGTCTCGGCGGTTGCC...........................................................................................................................................................................................................................................................................................................................................................2311.001010000
.................................AAGCTGTCTCGGCGGTTGCCA..........................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............................GACAAGCTGTCTCGGCGGG...............................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................TGTCTCGGCGGTTGCCAAGACT.....................................................................................................................................................................................................................................................................................................................................................2220.501010000
droAna3
-------ACCAGCCATGCAGTCCACACTTCGACAAGTTGTTTCGTCCGTAGCCAAGGTAGGAAATCGAATCAG--GCCATT-ACCGATT------------------------CACC-CCCCA----------AGTTATGCAAT-CTAACCTCACTGG-G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................GTTGTTTCGTCCGTAGCCAAGACT.....................................................................................................................................................................................................................................................................................................................................................2412.002000002
...................................GTTGTTTCGTCCGTAGCCAA.........................................................................................................................................................................................................................................................................................................................................................2012.002001001
..........AGCCATGCAGTCCACACTTCGA................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............CATGCAGTCCACACTTCGACAAGT...........................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...........GCCATGCAGTCCACACTT...................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
...............................ACAAGTTGTTTCGTCCGTAGCC...........................................................................................................................................................................................................................................................................................................................................................2211.001000010
.......................ACACTTCGACAAGTTGTTTCGTCCGTA..............................................................................................................................................................................................................................................................................................................................................................2711.001000001
..................AGTCCACACTTCGACAAGTTGT........................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..............................GACAAGTTGTTTCGTCCGTA..............................................................................................................................................................................................................................................................................................................................................................2011.001010000
..........................CTTCGACAAGTTGTTTCGTCCGTAGC............................................................................................................................................................................................................................................................................................................................................................2611.001000001
................................CAAGTTGTTTCGTCCGTA..............................................................................................................................................................................................................................................................................................................................................................1811.001001000
........................CACTTCGACAAGTTGTTTCGTCCGT...............................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................AGTTGTTTCGTCCGTAGCCAAGAC......................................................................................................................................................................................................................................................................................................................................................2411.001100000
...................GTCCACACTTCGACAAGTTGTT.......................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..............................GACAAGTTGTTTCGTCCGTAGCC...........................................................................................................................................................................................................................................................................................................................................................2311.001010000
................................CAAGTTGTTTCGTCCGTAGCC...........................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......................ACACTTCGACAAGTTGTTTCGTCCGT...............................................................................................................................................................................................................................................................................................................................................................2611.001010000
..........................CTTCGACAAGTTGTTTCGTC..................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......................................TTTCGTCCGTAGCCAAGACT.....................................................................................................................................................................................................................................................................................................................................................2030.331000010
droBip1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATACGCGG-----------CCAGA-G-AT-----SizeHit CountTotal NormTotal
No Reads
droKik1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCAAGGTCGCTAATTGGGCCAATTAGCAGCTGATACGCGG-----------CCGGA-G-ATTAGTGSizeHit CountTotal NormTotal
No Reads
droFic1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCGTTTTCAAGGTTGCTAATTGGGCCAATTATCAGCTGATAGGCGG-----------TCGGA-G-ATTAATGSizeHit CountTotal NormTotal
No Reads
droEle1
-------ACCAGCCATGCAGTCCACGCTTCGTCATGTTGTGTCGGCAGTAGCCAAGGTAAAAATC------GGGCGATGCA-GCAGATT-----CAC-----CAATCGTTTTTCGCC-CCCGA----------AGTTATGCAAT-CTAACCTCACCGA-GGGGG---TCG------CAAAATGGGCA-GGAAAAGCCTGGAAAATGCATT-----------GGT-------------A----------TCCTCTGCAGTGCTCATATGATCGCAGTGGCT----GAATCACTGGCGACTTAAGGGATTTGTTTGG-----------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATATGCGG-----------CCGGA-G-ATTA---SizeHit CountTotal NormTotal
No Reads
droRho1
-------ACCAGCCATGCAGTCCACGCTTCGACATGTTGTGTCGGCAGTAGCCAAGGTAAAAATC------GGCCGATACT-GCCGATT-----CAC-----CAATCGCCTTTCGCC-CCCCA----------AGTTATGCAAT-CTAACCTCACCGAAGGGGG---CCC------TGAAATGGGCA-GGAAAAGCCTGGAAAATGCACT-----------TGG-------------A----------TCACCTGCAGTGCTCATATGATCGCAGTGGGT----GAATCACTGGCG-TCTGGCGGATTTGTTTGG-----------CCCCGCTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATATGCGG-----------CCGGA-G-ATTA---SizeHit CountTotal NormTotal
No Reads
droBia1
CGCCCGCTCCAGCCATGCAGTTCACGCTCCGCCATGTCGTGTCGGCAGTAGCCAAGGTAAAGACC------GCAGGATGTT-GGGGATT-----CCGCTTTGCGAACGCCTTTCGCCCCCCCA----------AGTTATGCAAT-CTAACCTCACCGA-GGGGG---CCG------TGAAATGGGCA-GGAAAAGCCTGGAAAACGCAGC-----------TGG-------------A----------TCGCCTGCAGCGCTCATATGATCGCGGCG-GT----GAATCACTGGCG-TCTGGGGGATTTGTTTGG-----------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATCATCAGCTGATAGGCGG-----------CCGGA-G-ATTA---SizeHit CountTotal NormTotal
No Reads
droTak1
-------ACCAGCCATGCAGTCCACGCTTCGCCATGTTGTGTCGGCAGTAGCCAAGGTAAGGATC------GGGC-ATACC-ACCGATTGCAATCCC-----CAAACGCCTTTCGCC-CCCCA----------AGTTATGCAAT-CTAACCTCACCGA-GGGGG---TCG------TGAAATGGGCCTGGAAAAGCCCGGAAAATGCACC-----------TGG-------------C----------CCACCTGCAGTGCTCATATGATC-----------------------------GGGGGATTTGTTTGG-----------CCCCGCTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATAGGCGG-----------CCGGA-G-ATTA---SizeHit CountTotal NormTotal
No Reads
droEug1
-------ACCAGCCATGCAGTCCACGCTTCGACATGTTGTGTCCGCAGTAGCCAAGGTAAAGATC------GGACGATATT-GTCAATT-----CCC-----CAAACACCTTTCGCC-CCCCA----------AGTTATGCAAT-CTAACCTCACCGA-AG-GG---TCG-----------TGGGCA-GGAAAAGCCTGGAATATGCACT-----------TAG-------------A----------TCACTTGCAGTGCTCATATGATCGCA-TACTT----GAATCACTGGCG-TTTGGGGGATTTGTTTGG-----------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATAGGCGG-----------CCAGA-G-ATTAGTASizeHit CountTotal NormTotal
No Reads
dm3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCGTTTTCAAGGTCGCTAATTAGGCCAATTATCAGCTGATAGTCGG-----------CCGAA-G-ATTA---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................CTGATAGTCGG-----------CCGAA-G-AT.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AGGCCAATTATCAGCTGA.................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATAGTCGG--------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATAGTCGG--------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
-------ACCAGCCATGCAGTTCACGCTCCGTCATGTTGTTTCGGCAGTAGCCAAGGTAAGGATC------GGGAGACATA-ACAGATT-----CCC-----CAAACGCCA-TCGCC-CCTCA----------AGTTATGCAAT-CTAACCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................CATGTTGTTTCGGCAGTAGCCAAG........................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.........................GCTCCGTCATGTTGTTTCGGCAGTAGCC...........................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
..................................TGTTGTTTCGGCAGTAGCCAAGACT.....................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..............................GTCATGTTGTTTCGGCAGTAGCCAA.........................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..................................TGTTGTTTCGGCAGTAGCCAAG........................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
............................CCGTCATGTTGTTTCGGCAGTAGCC...........................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
...................................GTTGTTTCGGCAGTAGCCAAGA.......................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
..............................GTCATGTTGTTTCGGCAGTAGCCAAGA.......................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEre2
-------ACCAGCAATGCAGTTCACGCTCCGTCATGTTGTTTCGGCAGTAGCCAAGGTAAGGAAT------GGGAGACATA-ACCGATT-----CCC-----CAAACGCCA-TCGCC-CCTCA----------AGTTATGCAAT-CTAACCTCACCGA-GGGGG---TCG------AGATATGGGCA-GGAAAAGGCTGGAAAATGCACT-----------TGG-------------A----------TCACCTGCAGTGCTCATATGATCCCAGTGGGT----GAATCACTGGCG-TTTGGGGGATTTGTTTGG-----------CCCCGTTTTCAAGGTCGCTAATTGGGCCAATTATCAGCTGATAGTCGG-----------CCGAA-A-GTTA---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................TCCGTCATGTTGTTTCGGCAGTA..............................................................................................................................................................................................................................................................................................................................................................2312.0020000002
.................CAGTTCACGCTCCGTCATGTTGTTT......................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..................................TGTTGTTTCGGCAGTAGC............................................................................................................................................................................................................................................................................................................................................................1811.0010010000
.........................GCTCCGTCATGTTGTTTCGG...................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
..................................TGTTGTTTCGGCAGTAGCCAAGA.......................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.........................GCTCCGTCATGTTGTTTCGGCAGT...............................................................................................................................................................................................................................................................................................................................................................2411.0010001000
......................CACGCTCCGTCATGTTGTT.......................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
..............................GTCATGTTGTTTCGGCAGT...............................................................................................................................................................................................................................................................................................................................................................1911.0010001000
..................AGTTCACGCTCCGTCATGT...........................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...........................................................................................................................................................................................................ATGCACT-----------TGG-------------A----------TCACCTG.................................................................................................................................................1811.0010000010
.................................................................................................................................................................................................................................................................................................ACTGGCG-TTTGGGGGATTTGTTTGG-----------C.........................................................................2611.0010000010
...........GCAATGCAGTTCACGCTCCGTCATGTT..........................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...........GCAATGCAGTTCACGCTCC..................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
...................................GTTGTTTCGGCAGTAGCCAAGACT.....................................................................................................................................................................................................................................................................................................................................................2411.0010000100
..............ATGCAGTTCACGCTCCGTCA..............................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
......................................GTTTCGGCAGTAGCCAAGACT.....................................................................................................................................................................................................................................................................................................................................................2120.5010001000

Generated: 05/16/2015 at 11:29 PM