ID:

dvi_20907

 Coordinate:

scaffold_13049:21922759-21922812 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.9 -8.9 -8.6 -8.5

Flybase annnotation

exon [dvir_GLEANR_13789:2]; CDS [Dvir\GJ13937-cds]; CDS [Dvir\GJ13937-cds]; exon [dvir_GLEANR_13789:3]; intron [Dvir\GJ13937-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
ROO_I-intLTRPao+
(CAG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################------------------------------------------------------##################################################
AGGACAACAGCAACGACAATGACAACGACAGCACCGATGGCGAGGCCTGCGTCCTGAACGGGCGTCGCCTCAAGTCCAGCTACAAGCAGCAGCAGCAGCAGCAGCAACTACAACAGCAGCAGCAGCAGCAACTACAACAGCAGCAGCAGCAACA
**************************************************...(((.....((...((....((.....))....))....))........)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 V116
male body		 M027
male body		 SRR060665
9_females_carcasses_total
 M061
embryo
 GSM1528803
follicle cells		 SRR060668
160x9_males_carcasses_total
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 V047
embryo
 V053
head
 SRR060659
Argentina_testes_total
 SRR060670
9_testes_total
 SRR060667
160_females_carcasses_total
 SRR060656
9x160_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060681
Argx9_testes_total
....................................................................CTCAAGTCCAGCTACAAGCAGCAG.............................................................. 24 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................CAATGACAACGACAGCACCGAT.................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTCCTGAACGGGCGTCGCCT.................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TGACAACGACAGCACCGATGGCGAG.............................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GCCTGCGTCCTGAACGGGCGTCGC...................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................CAATGACAACGACAGCACCGATGGCGA............................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............GACAATGACAACGACAGCA......................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................CGAGGCCTGCGTCCTGAGCGG............................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................CCAGCTACAAGCAGCAGCAGCAGCA...................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CGAGGCCTGCGTCCTGAACGG............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TCCCTGCGTCCTGAACGCGCGT......................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................GTCGCCTCAAGTCCAGCTAC....................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TCAATGACAACGACAGCAC........................................................................................................................ 19 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................CGCCTCAAGTCCAGCTACAAGC................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................TCCTGAACGGGCGGCGCCTCA.................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................GCCTGCGTCCTGAACGGGCGTCGCCT.................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................ACCGATGGCGAGGCCTGC........................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GGCCTGCGTCCTGAACGGGCGTC........................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................ATGACAACGACAGCACCGAT.................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GACAGCACCGATGGCGAGGCCTGCGTC..................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................AGGCCTGCGTCCTGAACGGGC........................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GCAGCAACTACAACAGCAGCAGCAGC.... 26 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................GCAGCAACTACAACAGCAGCAGCA...... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GCAGCAACTACAACAGCAGCAGCA.............................. 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TACAACAGCAGCAGCAGCAGCAAC...................... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GCAGCAACTACAACAGCAGCAGCAGC............................ 26 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................CGATGGCGAAGCCAGCTTCCT................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................CGACATCACCGATGGGGA............................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................AGCAACTACAACAGCAGCAGCAGC.... 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................AACTACAACAGCAGCAGCAGC.... 21 0 10 0.20 2 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................GCAGCAACTACAACAGCAGC.......... 20 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AACTACAACAGCAGCAGCAGC............................ 21 0 10 0.20 2 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................GCAACTACAACAGCAGCAGCAGCAGC......................... 26 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GCAGCAACTACAACAGCAGC.................................. 20 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................AGCAACTACAACAGCAGCAGCAGC............................ 24 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GCAACTACAACAGCAGCAGCAGC............................ 23 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................GCAACTACAACAGCAGCAGCAGC.... 23 0 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................AGCAGCAACTACAACAGCA............ 19 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................AGCAGCAACTACAACAGCA.................................... 19 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TGCGAGGCCTCCGCCCTGA................................................................................................. 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................ACTACAACAGCAGCAGCAGC............................ 20 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................ACTACAACAGCAGCAGCAGC.... 20 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................AGCAGCAGCAACTACAACA....................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................ACAACAGCAGCAGCAGCA... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AGCAGCAGCAGCAGCAGCAA............................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................CACCGGTGGCGAAGCCGGC........................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................AACAGCAGCAGCAGCAACA 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................AGCAGCAGCAGCAGCAACT..................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AGCAGCAGCAACTACAACA............... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TACAACAGCAGCAGCAGCAGC......................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ACAACAGCAGCAGCAGCA........................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ACAACAGCAGCAGCAGCAGCA........................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................ACAAGCAGCAGCAGCAGCAGCAG.................................................. 23 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................ACAAGCAGCAGCAGCAGCAGC.................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCCTGTTGTCGTTGCTGTTACTGTTGCTGTCGTGGCTACCGCTCCGGACGCAGGACTTGCCCGCAGCGGAGTTCAGGTCGATGTTCGTCGTCGTCGTCGTCGTCGTTGATGTTGTCGTCGTCGTCGTCGTTGATGTTGTCGTCGTCGTCGTTGT
**************************************************...(((.....((...((....((.....))....))....))........)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 M027
male body		 V053
head
 M028
head
 SRR060657
140_testes_total
 SRR060658
140_ovaries_total
 SRR060660
Argentina_ovaries_total
 SRR1106729
mixed whole adult body
 SRR060687
9_0-2h_embryos_total
 SRR060679
140x9_testes_total
.....................................TCCGCTCCGGACGCAGGGC.................................................................................................. 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................GCTGTAGTGGCTACCCCTTC............................................................................................................. 20 3 4 1.00 4 0 0 0 0 0 2 1 1 0 0 0
........................AGCTGTCATGGCTACCGATC.............................................................................................................. 20 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................TTGCTGTCGTGGCTACCGCTC.............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................AGGACTTGCCCGCAGCGGAGT.................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............GCTGTTACTGTTGCTGTCGTG........................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................GCAGCGGAGTTCAGGTCGATG....................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
............................................AGGACGCAGGACTTGCCCGCAG........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..CTGTTGTCGTTGCTGTTACT.................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................CCGCGGCGGAGTTCAGGTCGGT........................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................TGCAGGACTTGCCCGCAGCGGA.................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....TTTGTCGTTGCTGTTACTGTTGC............................................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........................................TCCGGAAGCAGGACGTGC.............................................................................................. 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................GTCTTGGCCGCAGCGGACTT................................................................................. 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..........................................TCCGTCCGCAGGACTTG............................................................................................... 17 2 18 0.17 3 0 0 0 0 0 0 0 0 3 0 0
......................GTTGTTGTCGTGGCTACGGGTC.............................................................................................................. 22 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
........................................GCTCAGGCCGCCGGACTTGC.............................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0
.........................GCTGTAGTGGCTACCCCTT.............................................................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0
................................................................................................TCGTCGTCGTTGATGTTGT....................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................TCGTCGTCGTTGATGTTGT............... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
........................................GATCCGGCCGTAGGACTTG............................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:21922709-21922862 + dvi_20907 AGGA-CAA------CAGCAAC---GACAAT------GA---------------------------------------CAACG---------ACAGCACCGAT---------G---GCGAGGCCTGCGTCCTGAACGGGCGTCG----------------------CCTCAAGTCCAG----CTACA-----AGCAGCAGCAGCAGCAGCAGCAACTACAACAGCAGCAGCAGCAGCA-ACT----ACAACAGCAGCAGCAGCAACA
droMoj3 scaffold_135:126-283 + CCAA-CAA------CAACAAC---AACAAC------AG---------------------------------------CAGCA---------GCAACAACTACAGCAGCAACT---GCTAAAGCAACAACAGAAACT------------------GA---ATAA-----------CAA----TAACAACAACAACAGCAGCAGCAGCAGCAACAACTACAGCAGCAGCAGCAGCAACA-ACT----ACAGCAGCAGCAGCAGCAACA
droGri2 scaffold_15110:21635855-21635987 - AGGA-CAT------GAACAAT---GACAAC------GA---------------------------------------CAACG---------ATAGCACAGAC---------G---GCGAGCCTTGTGTCTTGAACGGACGTCG----------------------TCTCAAATCCAG----TTACA--------------------------AGCAACAGCAGCAACAGCAGCAGCA-ACA----GTTGCTGGGGAAGCAGCAACT
droWil2 scf2_1100000008636:1208-1367 + AGCAACAA------CAACAAC---AGCAAC------AA---------------------------------------CAACA------ACAGCAGCAACAAC---------A---ACAGCTGCAACAACAACAGCAACAACAACAGC-------------------------AGCAG----CGACAGCAACAACAGCAGCAGCAGCAGCAACTGCAACAACAGCAGCAGCAACAGCA-ACA----ACAACAACATCAGCAGCAACA
dp5 XL_group3a:801553-801697 - GCGG-CGG------CGACGAC---GGCAGC------GG---------------------------------------CAACA---------GCAGCAGCGGA---------G---GCGGCGGCGGAG----GAGCG------------------GGCAAC--------------CAG----CAGCAGCTCCGCCAAATGCAGCAGCATCAGCAGCAGCACCAGCAGCAGCTGCAGCA-CCT----ACTCCAGCAGCAGCAGCAACA
droPer2 scaffold_15:2095811-2095960 + TGG--CAGCGGCGGCGACGAT---GGCAGC------GG---------------------------------------CAACA---------GCAG------C---------A---GCGGAGGCGGCGGCGG----------------AGGAGCGGGCAAC--------------CAG----CAGCAGCTCCGCCAAATGCAGCAGCACCAGCAGCAGCACCAGCAGCAGCTGCAGCA-CCT----ACTCCAGCAGCAGCAGCAACA
droAna3 scaffold_12943:1956375-1956534 - AGCAGCAG------CAGCAAC---TGCAAA------TC---------------------------------------CAGCA------GCTGCAGCAACAAT---------T---GCTGCTGCAGCGACTTGAGCGGGAGTTGCAGT-------------------------TGCAA----CAGCAACAACATCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAACAATTACT-ACA----ACAGCAACAGGAGCAACACCT
droBip1 scf7180000396728:1299470-1299623 + AGCAGCAG------CAGCAAC---TGCAAA------TC---------------------------------------CAGCA------GCTGCAGCAACAAT---------T---GCTGCTGCAGCGACTTGAGCGGGAGTTG-------------------------------CAG----TTGCAACAACAACAGCATCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCA-ACA----ACAATTGCTACAACAGCAGCA
droKik1 scf7180000302274:154815-154961 - CGCC-CAA------CAGCAGC---ATGCAC------AG---------------------------------------CAACA---------GCATCATGGCC---------A---TTCATTGCAT---CCG----------------CACCAC----ACACAT-----------CAG----CAGCAACAACAACAGCAGCAGCAGCAGCAACAACACCACCAGCAGCAGCATCAGCA-GCA----ACATGCACAGCAACAGCAGCA
droFic1 scf7180000453829:1093051-1093197 + ACAA-CAG------CAGCAAC---AACAGC------AG---------------------------------------CAGCA---------ACAGCAACAGC---------A---GCAACTACAA---CAA----------------CAACAG----CAGCAA-----------CAG----CAGCAGCAACAACAGCAACAGCAGCAACTACAACAACAACAGCAGCAGCAGCAGCA-ACT----ACAACAACAACAGCACCAAAT
droEle1 scf7180000491000:134660-134808 + ACAA-TGA------CGACATC---CACAAC------GA---------------------------------------CAACG---------GCGCCGACGGC---------A---GCGGCTTCGGCCACCTCGCCAGGTGTCACACT-------------------------CGCGG---------GGAACA--GGCAGCACCACCAGCAGCAGCAACAGCATCAGCAGCAGCAGCA-ACA----ACAGCAGCAGCAGCAGCAACA
droRho1 scf7180000779985:62505-62649 + AATA-CAC------CAGTGAG---TACCTG------AC---------------------------------------CAATG-------CCACAGCGGTGGC---------C---GTTGCTGCGG------------------------------TCAACCAGCG--------ACAG----CAATTGCAGCTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAACAGCA-GCA----ACAGCAGCAGCAGCAGCAACA
droBia1 scf7180000302075:4761538-4761697 - GGCAACAG------CAGCC------GG--------------------TCACCGCCAGCGCCAGCAAT-----------------GGTG---GAT---------------------CCGCCAGCACCAACCAG-CCCAGTCCCAC-------------AT--CG--CCG------CAG----GGCCACCTCCAGCAGCAGCAGCAGCAGCACCAGCAACACCAGCAGCAGCAGCAGCA-ACA----TCAGCAGTTGCAACAGCAGCA
droTak1 scf7180000415345:325328-325472 + ACCA-CAG------CAACAGC---AGCAATAACAACTA---------------------------------------CTACC---------ACAG------C---------A---ATGCCAGCAA------------------------------GCAGGCAGCA--------GCAGCACACGCCAGCAACA--TGTACCAACAGCAGCAGCAGCAACATCAGCAACAGCAGCAACA-TCT----GCAGCAGCAGCAACAGCAACA
droEug1 scf7180000409456:206617-206772 - AACA-CAA------AAGCAAC---AGGCTA------CG---------------------------------------CAACAACAACA---AATCCAACAGC---AACAATT---GCAACACCAACAACAC--------------------------ATGCAG-----------CAG----CAACAAATACAGCAACAACAGCAGCAGCAGCAACAACAACAGCAACAACAACAGCA-GCA----ACAACAGCAGCAGCAGCAACT
dm3 chr2L:20689390-20689538 - ACGA-CGT------CGGCATC---GGCAGC------TGG--------A-----------------------------CACCA---CCA---ACACCATAACC---------A---CCTCCTCCAT---CAG----------------CAGCAT-CACAAC--------------CAG----CAGCA---GCAGCAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAGCAGCA-GGA----ACATCTGCAACAGCAACACCA
droSim2 x:11942033-11942174 - AGGGTCAG------CAGCAGG---GTCAGG------GG---------------------------------------CAAGG---------ACAGGGCCAGG---------G---TCAGGGTCAGACCCAAGGACAAAGCCAG----------------------TCCCC----------------------ATCCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCA-ACA----ACAGCAGCAGCAGCAGCAGCA
droSec2 scaffold_25:425770-425907 - GGGC-CAA------AAGGAAC---GAATGC------GC---------------------------------------C-ATGA------CCA---CGACAAT------AACGGCCAAGATTGC------------------------------------GCAA-----------CGG----CAACAGCAACATCAGCAGCAGCAACAGCAGCAACTGCAGCATCAGCAGCAGCAGCA-ACA----ACAGCAGCAGCAGCATCAGC-
droYak3 2L:2522671-2522826 + GACAACGA------CAACGAC---AACGAAAACAACAAGGCGCAATGTTAACGCCAGCGT--GCATTGTTAGCAGAT--------------------------------------------------------TCAA----------------------GTG-----------TCTG----GCGTTGC---AGCAGCAGAGGCGGCAGCAGCAACCACAGCAACAACAGCAACATGCAACA---TGCAGCAGCAGCATCAGCAGCA
droEre2 scaffold_4845:17610847-17611000 - -----CAA------CAGCAACGGCAACAGC------GC----------------------CAGTAAC------AGTT----------T---GAT---------------------CCGCCTGCAGCAGCAGCAGCAGCAGCAGCAAC-------------------------TACAG----CAGCAACTGCAGC---AGCAGCTGCAGCAGCAAATGCAACAGCAGCAGCAGCAACA-TCTATTGGCAACAGCAACAGCAACAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGGA-CAA------CAGCAAC---GACAAT------GA---------------------------------------CAACG---------ACAGCACCGAT---------G---GCGAGGCCTGCGTCCTGAACGGGCGTCG----------------------CCTCAAGTCCAG----CTACA-----AGCAGCAGCAGCAGCAGCAGCAACTACAACAGCAGCAGCAGCAGCA-ACT----ACAACAGCAGCAGCAGCAACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................CTCAAGTCCAG----CTACA-----AGCAGCAG...................................................................2412.002001000000000000000100000000000000000000000000000000000000000000
..........................CAAT------GA---------------------------------------CAACG---------ACAGCACCGAT---------...........................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................GTCCTGAACGGGCGTCG----------------------CCT..................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................T------GA---------------------------------------CAACG---------ACAGCACCGAT---------G---GCGAG..................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................GCCTGCGTCCTGAACGGGCGTCG----------------------C....................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................CAAT------GA---------------------------------------CAACG---------ACAGCACCGAT---------G---GCGA...................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
........................GACAAT------GA---------------------------------------CAACG---------ACAGCA.........................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................CCAG----CTACA-----AGCAGCAGCAGCAGCA...........................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................CGAGGCCTGCGTCCTGAACGG.................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................GTCG----------------------CCTCAAGTCCAG----CTAC.................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CG----------------------CCTCAAGTCCAG----CTACA-----AGC........................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................GCCTGCGTCCTGAACGGGCGTCG----------------------CCT..................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................ACCGAT---------G---GCGAGGCCTGC............................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GGCCTGCGTCCTGAACGGGCGTC............................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............................AT------GA---------------------------------------CAACG---------ACAGCACCGAT---------...........................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
.................................................................................G---------ACAGCACCGAT---------G---GCGAGGCCTGCGTC.........................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................AGGCCTGCGTCCTGAACGGGC...............................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GCAGCA-ACT----ACAACAGCAGCAGCAGC....2640.251000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GCAGCA-ACT----ACAACAGCAGCAGCA......2440.251001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GCAGCAACTACAACAGCAGCAGCA...................................2440.251001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TACAACAGCAGCAGCAGCAGCA-AC..........................2440.251001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GCAGCAACTACAACAGCAGCAGCAGC.................................2640.251000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AGCA-ACT----ACAACAGCAGCAGCAGC....2450.201001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................A-ACT----ACAACAGCAGCAGCAGC....21100.202000000000000000001000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................GCAGCA-ACT----ACAACAGCAGC..........2050.201001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AACTACAACAGCAGCAGCAGC.................................21100.202000000000000000001000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................GCAACTACAACAGCAGCAGCAGCAGC..............................2650.201000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GCAGCAACTACAACAGCAGC.......................................2050.201001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................AGCAACTACAACAGCAGCAGCAGC.................................2450.201001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................GCAACTACAACAGCAGCAGCAGC.................................2360.171000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GCA-ACT----ACAACAGCAGCAGCAGC....2360.171000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................AGCAGCA-ACT----ACAACAGCA............1980.131001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................AGCAGCAACTACAACAGCA.........................................1980.131001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ACTACAACAGCAGCAGCAGC.................................20110.091000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................ACT----ACAACAGCAGCAGCAGC....20110.091000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AGCAGCAGCAACTACAACA............................................19200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................ACAACAGCAGCAGCAGCA...18200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCAA....................................................20200.051000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACA19200.051000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGCAGCAGCAGCAGCA-ACT----.....................19200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AGCAGCAGCA-ACT----ACAACA...............19200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TACAACAGCAGCAGCAGCAGC..............................21200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................ACAACAGCAGCAGCAGCA................................18200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................ACAACAGCAGCAGCAGCAGCA-............................21200.051000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................ACA-----AGCAGCAGCAGCAGCAGCAG.......................................................23200.051000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................ACA-----AGCAGCAGCAGCAGCAGC.........................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CCAA-CAA------CAACAAC---AACAAC------AG---------------------------------------CAGCA---------GCAACAACTACAGCAGCAACT---GCTAAAGCAACAACAGAAACT------------------GA---ATAA-----------CAA----TAACAACAACAACAGCAGCAGCAGCAGCAACAACTACAGCAGCAGCAGCAGCAACA-ACT----ACAGCAGCAGCAGCAGCAACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................AGAAACT------------------GA---ATAA-----------CAA----TAACAACAACA..........................................................................2780.131100000
............................................................................................................................ACAACAGAAACT------------------GA---ATAA-----------CAA----TAACA................................................................................2680.131000010
...................................................................................................................................AAACT------------------GA---ATAA-----------CAA----TAACAACAAC...........................................................................2480.131100000
............................................................................................................................ACAACAGAAACT------------------GA---ATAA-----------CAA----TAA..................................................................................2490.111100000
..............CAACAAC---AACAAC------AG---------------------------------------CAGCA---------GC.............................................................................................................................................................................22200.102200000
..AA-CAA------CAACAAC---AACAAC------AG---------------------------------------CAGCA---------GC.............................................................................................................................................................................27200.051000001
...............................................................................................................................................................................................................GCAACAACTACAGCAGCAGCAGC....................................23200.051100000
..........................................................................................................................................................................................................................................ACA-ACT----ACAGCAGCAGCAGCA......21200.051100000
...........................................................................................................................................................................................................................................CA-ACT----ACAGCAGCAGCAGCA......20200.051100000
...............................................................................................................................................................................AA----TAACAACAACAACAGCAGCA.................................................................22200.051000001
............................................................................................................................................................................................AACAACAGCAGCAGCAGCA...........................................................19200.051000010
.......................................................................................................................................................................................................................................GCAACA-ACT----ACAGCAGCAGCAGC.......23200.051100000
.CAA-CAA------CAACAAC---AACAAC------AG---------------------------------------CAGCA---------...............................................................................................................................................................................26200.051000001
...A-CAA------CAACAAC---AACAAC------AG---------------------------------------CAGCA---------GCAAC..........................................................................................................................................................................29200.051100000
............................................................................................................................................................................................AACAACAGCAGCAGCAGCAGCAAC......................................................24200.051000010
........................................................................................................................................................................................CAACAACAACAGCAGCAGCAG.............................................................21200.051100000
.............................................................................................................................................................................................ACAACAGCAGCAGCAGCAGCAAC......................................................23200.051000010
..................................................................................................................................................................................................................ACAACTACAGCAGCAGCAGCA...................................21200.051100000
...................................................................................................................................................................................................................CAACTACAGCAGCAGCAGCA...................................20200.051100000
...............AACAAC---AACAAC------AG---------------------------------------CAGCA---------G..............................................................................................................................................................................20200.051100000
droGri2
AGGA-CAT------GAACAAT---GACAAC------GA---------------------------------------CAACG---------ATAGCACAGAC---------G---GCGAGCCTTGTGTCTTGAACGGACGTCG----------------------TCTCAAATCCAG----TTACA--------------------------AGCAACAGCAGCAACAGCAGCAGCA-ACA----GTTGCTGGGGAAGCAGCAACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......AT------GAACAAT---GACAAC------GA---------------------------------------CA...........................................................................................................................................................................................1920.50110
.................................................................................................................................TTGAACGGACGTCG----------------------TCTCAAATCCAG----TT...................................................................................2820.50110
droWil2
AGCAACAA------CAACAAC---AGCAAC------AA---------------------------------------CAACA------ACAGCAGCAACAAC---------A---ACAGCTGCAACAACAACAGCAACAACAACAGC-------------------------AGCAG----CGACAGCAACAACAGCAGCAGCAGCAGCAACTGCAACAACAGCAGCAGCAACAGCA-ACA----ACAACAACATCAGCAGCAACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................AACAACAGC-------------------------AGCAG----CGACAGC..............................................................................2121.50301101
.............................................................................................................................................AACAGC-------------------------AGCAG----CGACAGCA.............................................................................1961.17700070
.......................................................................................................................................AACAACAACAGC-------------------------AGCAG----CGACAGCA.............................................................................2521.00201010
......................................................................................................................................CAACAACAACAGC-------------------------AGCAG----CGACAGCA.............................................................................2620.50100010
........................................................................................................................................ACAACAACAGC-------------------------AGCAG----CGACAGC..............................................................................2320.50100001
.....................................................................................................................................GCAACAACAACAGC-------------------------AGCAG----CGACAGCA.............................................................................2720.50100010
.......................................................................................................................................AACAACAACAGC-------------------------AGCAG----CGACAGC..............................................................................2420.50100010
.......................................................................................................................................AACAACAACAGC-------------------------AGCAG----CGACA................................................................................2230.33100010
.....................................A---------------------------------------CAACA------ACAGCAGCAACA......................................................................................................................................................................18200.30600060
..............................................................................................................................................ACAGC-------------------------AGCAG----CGACAGCA.............................................................................1860.17101000
.............................................................................................................................................AACAGC-------------------------AGCAG----CGACAGC..............................................................................1870.14100010
................................................................................................................................................AGC-------------------------AGCAG----CGACAGCAACA..........................................................................1990.11100010
................................................................................CA------ACAGCAGCAACAAC---------A---ACA....................................................................................................................................................20200.10200020
......................................................................................................................................................................................................................CAACAACAGCAGCAGCAACAGCA-A...........................24200.10202000
................................................................................................AACAAC---------A---ACAGCTGCAAC............................................................................................................................................18130.08100010
.......................................................................................................................................AACAACAACAGC-------------------------AGCAG----CG...................................................................................19160.06101000
..................................................................................................................................................................................................AGCAGCAGCAGCAGCAACTGCA..................................................22170.06101000
............................................................................................................................................................................................................................................A-ACA----ACAACAACATCAGCAGCAACA25190.05101000
............................................................................................................................................................................................................................................A-ACA----ACAACAACATCAGCAGCAAC.24190.05100010
..........................................................................................................................................................................................GCAACAACAGCAGCAGCAGCA...........................................................21200.05100010
..............................................................................................................................AACAACAGCAACAACAACA.........................................................................................................................19200.05100010
.........................................................................................................................................................................................AGCAACAACAGCAGCAGCAG.............................................................20200.05100010
.....................................................................................................................................GCAACAACAACAGC-------------------------AGCAG----C....................................................................................20200.05101000
...............................................................................................................................................................................................................................................CA----ACAACAACATCAGCAGCAAC.22200.05100010
................................................................................CA------ACAGCAGCAACAAC---------A---ACAGC..................................................................................................................................................22200.05101000
....................C---AGCAAC------AA---------------------------------------CAACA------ACAGC.............................................................................................................................................................................19200.05100010
..............................................................................................................................................................................................................................GCAGCAGCAACAGCA-ACA----AC...................20200.05100100
.......................................................................................................................................................................................................................AACAACAGCAGCAGCAACAGCA-ACA----.....................25200.05101000
....................................................................................................................................AGCAACAACAACAGC-------------------------AGC...........................................................................................18200.05100010
............................................................................................................................................................................................................................................A-ACA----ACAACAACATCAGCA......19200.05100010
.........................................................................................................................................................................................AGCAACAACAGCAGCAGCAGCA...........................................................22200.05100010
.........................................................................................................................................................................................................................CAACAGCAGCAGCAACAGCA-............................20200.05101000
.......................................................................................................................................................................................ACAGCAACAACAGCAGCAGCAGCA...........................................................24200.05100001
..CAACAA------CAACAAC---AGCAAC------A.....................................................................................................................................................................................................................................20200.05100100
....................C---AGCAAC------AA---------------------------------------CAACA------ACAGCAGCAAC.......................................................................................................................................................................25200.05100010
.............................................................................................................................CAACAACAGCAACAACAACAG........................................................................................................................21200.05101000
......................................................................................................................................................................................................................CAACAACAGCAGCAGCAACAG...............................21200.05100010
............................................................................................................................................................................................................................................A-ACA----ACAACAACATCAGCAGC....21200.05100010
..........................................................................................................................................................................................GCAACAACAGCAGCAGCAGCAGC.........................................................23200.05110000
.....................................................................................................................................................................................................................................CAACAGCA-ACA----ACAACAACATCAGC.......25200.05101000
...............................................................................................................................................................................................................................................CA----ACAACAACATCAGCAGCA...20200.05100010
......................................................................................................................................................................................................................................................CAACAACATCAGCAGCAACA20200.05100010
...........................................................................................................................................................................................CAACAACAGCAGCAGCAGCA...........................................................20200.05100001
....................................AA---------------------------------------CAACA------ACAGCAGCAACA......................................................................................................................................................................19200.05101000
...........................................................................................................................................................................................................................................CA-ACA----ACAACAACATCAGCAGC....22200.05100010
.......................................................................................................................................................................................................................................................AACAACATCAGCAGCAAC.18200.05100010
.........................................................................................................................................................................................AGCAACAACAGCAGCAGCAGCAGCA........................................................25200.05101000
...........................................................................................................................................................................................................................ACAGCAGCAGCAACAGCA-ACA----AC...................23200.05100010
.............................................................................................................................................................................................................................AGCAGCAGCAACAGCA-ACA----ACAACA...............25200.05100010
.GCAACAA------CAACAAC---AGCA..............................................................................................................................................................................................................................................18200.05101000
........................................................................................................................................................................................CAGCAACAACAGCAGCAGCAGCAGCA........................................................26200.05100010
......................................................................................................................................................................................................................................................CAACAACATCAGCAGCAA..18200.05100010
...................AC---AGCAAC------AA---------------------------------------CAACA------ACAGCAGCA.........................................................................................................................................................................24200.05100010
..................AAC---AGCAAC------AA---------------------------------------CAACA------ACAGCAGC..........................................................................................................................................................................24200.05101000
.....................................A---------------------------------------CAACA------ACAGCAGCAACAAC---------A---.......................................................................................................................................................21200.05101000
.....................................................................................................................................................................................................................................................ACAACAACATCAGCAGCA...18200.05100010
.....CAA------CAACAAC---AGCAAC------AA---------------------------------------CA...........................................................................................................................................................................................20200.05101000
.......................................................................................................................................................................................................................AACAACAGCAGCAGCAACAGCA-............................22200.05100010
dp5
GCGG-CGG------CGACGAC---GGCAGC------GG---------------------------------------CAACA---------GCAGCAGCGGA---------G---GCGGCGGCGGAG----GAGCG------------------GGCAAC--------------CAG----CAGCAGCTCCGCCAAATGCAGCAGCATCAGCAGCAGCACCAGCAGCAGCTGCAGCA-CCT----ACTCCAGCAGCAGCAGCAACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................G----GAGCG------------------GGCAAC--------------CAG----CAGCAGCT.............................................................................2311.0010100000000
..............................................................................................GCAGCGGA---------G---GCGGCGGCGGA............................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................GCAGCA-CCT----ACTCCAGCAGCA.........2111.0010100000000
......................................................................................................................................................................................AGCAGCTCCGCCAAATGCA.................................................................1911.0010100000000
.........................................................................................................................................................................................................................................AGCA-CCT----ACTCCAGCAGCAGCAGC....2411.0010000100000
................................................................................................AGCGGA---------G---GCGGCGGCGGAG----G......................................................................................................................................2030.3310100000000
................................................................................................AGCGGA---------G---GCGGCGGCGGAG----.......................................................................................................................................1940.2510100000000
............................................................................................................................................................................................................GCATCAGCAGCAGCACCAGC..........................................2070.1410100000000
..............................................................................................................................................................................................................ATCAGCAGCAGCACCAGCAGT.......................................21200.0510000001000
........................................................................................................................................................................................................AGCAGCATCAGCAGCAGC................................................18200.0510001000000
droPer2
TGG--CAGCGGCGGCGACGAT---GGCAGC------GG---------------------------------------CAACA---------GCAG------C---------A---GCGGAGGCGGCGGCGG----------------AGGAGCGGGCAAC--------------CAG----CAGCAGCTCCGCCAAATGCAGCAGCACCAGCAGCAGCACCAGCAGCAGCTGCAGCA-CCT----ACTCCAGCAGCAGCAGCAACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................ACA---------GCAG------C---------A---GCGGAGGCGGC............................................................................................................................................2011.001100000
...............GACGAT---GGCAGC------GG---------------------------------------CAACA---------GCAG------C---------A---GC.....................................................................................................................................................2711.001010000
..................................................................................................................................G----------------AGGAGCGGGCAAC--------------CAG----CAGC.................................................................................2111.001000100
.....CAGCGGCGGCGACGAT---GGCAGC------......................................................................................................................................................................................................................................2211.001001000
...........................................................................................................................GGCGGCGG----------------AGGAGCGGGC.............................................................................................................1820.501010000
.......................................................................................................................................................................................................CAGCAGCACCAGCAGCAGCACCA............................................23200.051010000
droAna3
AGCAGCAG------CAGCAAC---TGCAAA------TC---------------------------------------CAGCA------GCTGCAGCAACAAT---------T---GCTGCTGCAGCGACTTGAGCGGGAGTTGCAGT-------------------------TGCAA----CAGCAACAACATCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAACAATTACT-ACA----ACAGCAACAGGAGCAACACCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................ACAACATCAGCAGCAGCAGCAGC.........................................................2340.251010000
..............................................................................................................................................................................CAA----CAGCAACAACATCAGC.....................................................................1970.141001000
...............................................................................................................................................................................................ATCAGCAGCAGCAGCAGCAACAAC...................................................2490.111010000
.........................................................................................................................................................................................AACAACATCAGCAGCAGC...............................................................18130.081010000
............................................................................................................................................................................................................GCAGCAACAACAACAGCAGCAGCAAC....................................26190.051010000
.......................................................................................................................................................................................................CAGCAGCAGCAACAACAA.................................................18200.051010000
.....................................................................................................................................................................................................AGCAGCAGCAGCAACAACAACAGC.............................................24200.051010000
...................................................................................................................................................................................................GCAGCAGCAGCAGCAACAACAACAGC.............................................26200.051100000
............................................................................................................................................................................................................GCAGCAACAACAACAGCAGCAGC.......................................23200.051010000
.............................................................................................................................................................................................................CAGCAACAACAACAGCAGCAGC.......................................22200.051100000
........................................................................................................................................................................................................AGCAGCAGCAACAACAAC................................................18200.051010000
.......................................................................................................................................................................................................CAGCAGCAGCAACAACAAC................................................19200.051010000
droBip1
AGCAGCAG------CAGCAAC---TGCAAA------TC---------------------------------------CAGCA------GCTGCAGCAACAAT---------T---GCTGCTGCAGCGACTTGAGCGGGAGTTG-------------------------------CAG----TTGCAACAACAACAGCATCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAGCA-ACA----ACAATTGCTACAACAGCAGCASizeHit CountTotal NormTotal
No Reads
droKik1
CGCC-CAA------CAGCAGC---ATGCAC------AG---------------------------------------CAACA---------GCATCATGGCC---------A---TTCATTGCAT---CCG----------------CACCAC----ACACAT-----------CAG----CAGCAACAACAACAGCAGCAGCAGCAGCAACAACACCACCAGCAGCAGCATCAGCA-GCA----ACATGCACAGCAACAGCAGCASizeHit CountTotal NormTotal
No Reads
droFic1
ACAA-CAG------CAGCAAC---AACAGC------AG---------------------------------------CAGCA---------ACAGCAACAGC---------A---GCAACTACAA---CAA----------------CAACAG----CAGCAA-----------CAG----CAGCAGCAACAACAGCAACAGCAGCAACTACAACAACAACAGCAGCAGCAGCAGCA-ACT----ACAACAACAACAGCACCAAATSizeHit CountTotal NormTotal
No Reads
droEle1
ACAA-TGA------CGACATC---CACAAC------GA---------------------------------------CAACG---------GCGCCGACGGC---------A---GCGGCTTCGGCCACCTCGCCAGGTGTCACACT-------------------------CGCGG---------GGAACA--GGCAGCACCACCAGCAGCAGCAACAGCATCAGCAGCAGCAGCA-ACA----ACAGCAGCAGCAGCAGCAACASizeHit CountTotal NormTotal
No Reads
droRho1
AATA-CAC------CAGTGAG---TACCTG------AC---------------------------------------CAATG-------CCACAGCGGTGGC---------C---GTTGCTGCGG------------------------------TCAACCAGCG--------ACAG----CAATTGCAGCTCCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAACAGCA-GCA----ACAGCAGCAGCAGCAGCAACASizeHit CountTotal NormTotal
No Reads
droBia1
GGCAACAG------CAGCC------GG--------------------TCACCGCCAGCGCCAGCAAT-----------------GGTG---GAT---------------------CCGCCAGCACCAACCAG-CCCAGTCCCAC-------------AT--CG--CCG------CAG----GGCCACCTCCAGCAGCAGCAGCAGCAGCACCAGCAACACCAGCAGCAGCAGCAGCA-ACA----TCAGCAGTTGCAACAGCAGCASizeHit CountTotal NormTotal
No Reads
droTak1
ACCA-CAG------CAACAGC---AGCAATAACAACTA---------------------------------------CTACC---------ACAG------C---------A---ATGCCAGCAA------------------------------GCAGGCAGCA--------GCAGCACACGCCAGCAACA--TGTACCAACAGCAGCAGCAGCAACATCAGCAACAGCAGCAACA-TCT----GCAGCAGCAGCAACAGCAACASizeHit CountTotal NormTotal
No Reads
droEug1
AACA-CAA------AAGCAAC---AGGCTA------CG---------------------------------------CAACAACAACA---AATCCAACAGC---AACAATT---GCAACACCAACAACAC--------------------------ATGCAG-----------CAG----CAACAAATACAGCAACAACAGCAGCAGCAGCAACAACAACAGCAACAACAACAGCA-GCA----ACAACAGCAGCAGCAGCAACTSizeHit CountTotal NormTotal
No Reads
dm3
ACGA-CGT------CGGCATC---GGCAGC------TGG--------A-----------------------------CACCA---CCA---ACACCATAACC---------A---CCTCCTCCAT---CAG----------------CAGCAT-CACAAC--------------CAG----CAGCA---GCAGCAGCAGCAGCAACAGCAACAACAACAGCAGCAGCAGCAGCAGCA-GGA----ACATCTGCAACAGCAACACCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................CAT-CACAAC--------------CAG----CAGCA---GCAGCAGC.....................................................................2521.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................T-CACAAC--------------CAG----CAGCA---GCAGCAGCA....................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................A---CCTCCTCCAT---CAG----------------CAGCA..................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AGCAT-CACAAC--------------CAG----CAGCA---GCAGCA.......................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................T-CACAAC--------------CAG----CAGCA---GCAGCAGC.....................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CAT-CACAAC--------------CAG----CAGCA---G............................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GCAACAACAACAGCAGCAGCAG.....................................22200.4590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000
..........................................................................................................................................................CACAAC--------------CAG----CAGCA---GCAGCAG......................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................AACAACAACAGCAGCAGCAGC....................................21200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000030010000000000000000000000000
.......................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCAGCA-GGA----.....................2540.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................ACAGCAACAACAACAGCAGCA.........................................21190.2140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................GCAACAACAACAGCAGCAGCAGCAGCA................................27200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
.....................................................................................................................................................................................................AGCAGCAACAGCAACAACAACAGC.............................................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AGCAGCAACAGCAACAACAACAG..............................................2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCA-GGA----A....................2460.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................CAAC--------------CAG----CAGCA---GCAGCAGCAGC..................................................................2360.1710000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AACAGCAACAACAACAGCAGCAGC.......................................24130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.............................................................................................................................................................................................................CAGCAACAACAACAGCAGCAG........................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................AGCAACAGCAACAACAACAGC.............................................21160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.......................................................................................................................................................................................................CAGCAACAGCAACAACAACAGC.............................................22160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................AGCAACAGCAACAACAACAGCAGC..........................................2490.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................AACAGCAACAACAACAGCAGCAGCAGT....................................27100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................CAGCAACAACAACAGCAGCAGCAGC....................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................GCAACAACAACAGCAGCAGCAGCAGC.................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.....................................................................................................................................................................................CAGCA---GCAGCAGCAGCAGCAACA...........................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CAGCAACAACAACAGCAG...........................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................GCAGCAGCAGCAACAGCAACAA....................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CAACAGCAACAACAACAGCAGCAGC.......................................25130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................AGCAGCAGCAGCA-GGA----AC...................18140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................CAGCAACAGCAACAACAACAGCA............................................23150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................AGCAGCAGCAGCAGCA-GGA----A....................20170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................GCAACAGCAACAACAACAGC.............................................20180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................CAGCAGCAGCAGCA-GGA----A....................18200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................AGCAGCAGCAGCAACAGCAACAACA..................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CAGCAGCAGCAGCAACAGCAACA.....................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AG----CAGCA---GCAGCAGCAGCAGCAA.............................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................AGCAACAACAACAGCAGCAGCAGCAGC.................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................ACAGCAACAACAACAGCA............................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................ACAACAGCAGCAGCAGCAGCA................................21200.0510000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AC--------------CAG----CAGCA---GCAGCAGCA....................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................GCAGCAGCAGCAACAGCAACAACA..................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................CAG----CAGCA---GCAGCAGCAGCAG................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................CAACAACAACAGCAGCAGCA......................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGCAGCAGCAACAGCAACAACA..................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCAGC..............................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CAGCAGCAGCAGCAACAGCA........................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCA-GGA----.....................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................CAGCAACAACAACAGCAGCAGCAGCA...................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................GCAGCAACAGCAACAACAA.................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CAACAACAACAGCAGCAGCAG.....................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................................................................GCAGCAGCAGCAGCAACAGC.........................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCAGCA................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCAGCA-............................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CAGCA---GCAGCAGCAGCAGCA..............................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CAACAACAACAGCAGCAGCAGC....................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CAGCAACAACAACAGCAGCAGCAGCAGC.................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................AGCAACAACAACAGCAGCAGCAGCA...................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................CAGCAGCAGCAACAGCAACAAC...................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................AACAACAACAGCAGCAGCAGCAGCA................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................ACAACAGCAGCAGCAGCAGC.................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................AACAGCAACAACAACAGCAGC..........................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................AGCAACAACAACAGCAGCAGC.......................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................AAC--------------CAG----CAGCA---GCAGCAGC.....................................................................19200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AGCAGCAACAGCAACAACA..................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCAGCAG...............................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................CAACAGCAACAACAACAGCAG...........................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................CAGCAACAACAACAGCAGCAGCAGT....................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droSim2
AGGGTCAG------CAGCAGG---GTCAGG------GG---------------------------------------CAAGG---------ACAGGGCCAGG---------G---TCAGGGTCAGACCCAAGGACAAAGCCAG----------------------TCCCC----------------------ATCCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCA-ACA----ACAGCAGCAGCAGCAGCAGCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................G---------------------------------------CAAGG---------ACAGGGCCAGG---------G---TCAGGGT................................................................................................................................................2511.00101000000000000000
.....CAG------CAGCAGG---GTCAGG------GG---------------------------------------CAAGG---------A..............................................................................................................................................................................2411.00100010000000000000
..................................................................................................................................................................................................CCCAGCAGCAGCAGCAGCAGCA..................................................22160.13220000000000000000
...........................................................................................................................................................................................................................................CA-ACA----ACAGCAGCAGCAGCAGC....22200.05100000000000100000
.............................................................................CAAGG---------ACAGGGCCAGT---------T---.......................................................................................................................................................17200.05100000000000001000
droSec2
GGGC-CAA------AAGGAAC---GAATGC------GC---------------------------------------C-ATGA------CCA---CGACAAT------AACGGCCAAGATTGC------------------------------------GCAA-----------CGG----CAACAGCAACATCAGCAGCAGCAACAGCAGCAACTGCAGCATCAGCAGCAGCAGCA-ACA----ACAGCAGCAGCAGCATCAGC-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................AT------AACGGCCAAGATTGC------------------------------------GCAA-----------CGG----C....................................................................................2511.0010010
..........................................................................................................................................................................................................................................GCA-ACA----ACAGCAGCAGCAGC.......20200.1020020
...........................................................................................................................................................................................CAACATCAGCAGCAGCAACAG..........................................................21110.0910001
...............................................................................................................................................................................................ATCAGCAGCAGCAACAGCAGCA.....................................................22130.0810010
..........................................................................................................................................................................................GCAACATCAGCAGCAGCAACA...........................................................21160.0610010
............................................................................................................................................................................................................................................A-ACA----ACAGCAGCAGCAGCA......19200.0510010
...........................................................................................................................................................................................................................................CA-ACA----ACAGCAGCAGCAGCA......20200.0510010
.........................................................................................................................................................................................AGCAACATCAGCAGCAGCAA.............................................................20200.0510001
...................................................................................................................................................................................................................................AGCAGCAGCA-ACA----ACAGCAGCA............22200.0510010
.............................................................................................................................................................................................ACATCAGCAGCAGCAACA...........................................................18200.0511000
.........................................................................................................................................................................................AGCAACATCAGCAGCAGC...............................................................18200.0510010
droYak3
GACAACGA------CAACGAC---AACGAAAACAACAAGGCGCAATGTTAACGCCAGCGT--GCATTGTTAGCAGAT--------------------------------------------------------TCAA----------------------GTG-----------TCTG----GCGTTGC---AGCAGCAGAGGCGGCAGCAGCAACCACAGCAACAACAGCAACATGCAACA---TGCAGCAGCAGCATCAGCAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
-----CAA------CAGCAACGGCAACAGC------GC----------------------CAGTAAC------AGTT----------T---GAT---------------------CCGCCTGCAGCAGCAGCAGCAGCAGCAGCAAC-------------------------TACAG----CAGCAACTGCAGC---AGCAGCTGCAGCAGCAAATGCAACAGCAGCAGCAGCAACA-TCTATTGGCAACAGCAACAGCAACAACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......AA------CAGCAACGGCAACAGC------GC----------------------CA............................................................................................................................................................................................................2211.0010000100
................................................................AAC------AGTT----------T---GAT---------------------CCGCCTGCAGCAGCA........................................................................................................................................2611.0010000100

Generated: 05/16/2015 at 11:18 PM