ID:

dvi_2089

 Coordinate:

scaffold_12728:755590-755740 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dvir\GJ15406-cds]; exon [dvir_GLEANR_15745:2]; intron [Dvir\GJ15406-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCCTTCTTAGTAACTAAATTGGTTACTATTGCTTGCTATATACTGTTATATATTGCTTTAGTTTTAAGAAGGTATATTTTGTCGTTTGGAAATTGATATTTAAATCCTTTTAATAATATTTAACAGTGATATACATACAATTTTTTTCAGAATAGAAACTAATCAAATATTAAATGTGTATAATTATTTTCTTTTAACAGCTTACGATTGTTTGTTACAAAGCTTTTAATGATAGCGACAACGGTGCTAG
**************************************************(((((...((((((((.........(((((((......((((((((.(((.((.(((((.((((......)))).)).))).)).)))))))))))..)))))))))))))))...)))))..............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060676
9xArg_ovaries_total
 SRR060689
160x9_testes_total
 V116
male body		 M061
embryo
 SRR060663
160_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060680
 9xArg_testes_total
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060688
160_ovaries_total
 V047
embryo
 M047
female body
 SRR060669
160x9_females_carcasses_total
 SRR060687
9_0-2h_embryos_total
...........................................................................................................................................................................................................TACGATTGTTTGTTACAAAGCTTT........................ 24 0 1 3.00 3 1 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................TTAATGATAGCGACAACGGTGCTAG 25 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................TAATGATAGCGACAACGGTG.... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTACGATTGTTTGTTACAAAGCTT......................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GTTTATTACAGAGCTTTTAAGGAT................. 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TACAAAGCTTTTAATGATAGC.............. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TTACGATTGTTTGTTACAAAGCTTT........................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TGATAGCGACAACGGTGCTAG 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGTTACAAAGCTTTTAATGATAGCGA............ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................TTTTAATGATAGCGACAACGG...... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................GCTTACGATTGTTTGTTACAAAGCTT......................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TAATGCTTACGATTGTTTGTTACAAAGC........................... 28 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTTAATGATAGCGACAACGGTGCTAG 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TTCTAATAATACATAACAGTGA......................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................TAGTGATAGCGACCCCGGTG.... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................ATTCTTTTCATTTAACAGCTT............................................... 21 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................TATTACAGAGCTTTTAAGGAT................. 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................ATAGAAGCTTATCAAATATGAA............................................................................. 22 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCGGAAGAATCATTGATTTAACCAATGATAACGAACGATATATGACAATATATAACGAAATCAAAATTCTTCCATATAAAACAGCAAACCTTTAACTATAAATTTAGGAAAATTATTATAAATTGTCACTATATGTATGTTAAAAAAAGTCTTATCTTTGATTAGTTTATAATTTACACATATTAATAAAAGAAAATTGTCGAATGCTAACAAACAATGTTTCGAAAATTACTATCGCTGTTGCCACGATC
**************************************************(((((...((((((((.........(((((((......((((((((.(((.((.(((((.((((......)))).)).))).)).)))))))))))..)))))))))))))))...)))))..............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060678
9x140_testes_total
 V047
embryo
 V053
head
 M028
head
 SRR060674
9x140_ovaries_total
...............................................................................................................................................................................................................................GAAAATTACTATCGCTGTT......... 19 0 1 1.00 1 1 0 0 0 0
.................................................................................................................TATTCGAAATTCTCACTATATG.................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
....................................GCTATATGACAATATTTATCGA................................................................................................................................................................................................. 22 3 5 0.20 1 0 0 1 0 0
......................................................................................................................................GAATTTTAAAAAAAGTCT................................................................................................... 18 2 20 0.05 1 0 0 0 1 0
.............................................................................................................................................AAAAAAAGTTTGATCGTTGAT......................................................................................... 21 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12728:755540-755790 - dvi_2089 AGCCTTCT--TAGT--AACTA---AATTGGTTACTATTGCTTGCTATATACT--GTTAT-------ATATTGCTTTAGTTTTAAGAAGGTATATT------TTG------------------------------------------------------------------------------------------------------------------------------T-C--------------------------------------------------------------------------GTTTGGAAATTGATATTTAAAT-CCTTTTAATAATAT-----------TTAACAGTGATAT--------------------------ACATA------------CAATTTTTTTCA------------------------GAATAGAAACTAATCAAATATTAAATGTGTATAATTATTTTCTTTTAACAGCTTACGATTGTTTGTTACAAAGCTTTTAATG------------------------ATAGC--GACAACGGT--------------------------------------------------------------------------------------------------------------------------------------------------------GCTAG
droMoj3 scaffold_6500:13852587-13852813 - ATTGTTGCTTCTTATTAATTT---ATATTATTTTTATTATTTTACATATATT--ATTAT-------ATATAT------------------------------------------------------------------------------------------------------------------------------------------GATTATATATTTCTATTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAG-------------------------------ATTTTGATTTTATTAT------------------------------------------ATTATTTATTTATTGTCT------------------------TTTGT--TATTAT-----------------------------------------------------------------TATTAATTTCTTTATATATAATATAATTATATATATAATATTATATACAATATATATATATATATAATTTAATTTGAATTTGTATTATCTATTAA
droGri2 scaffold_15126:1672746-1672898 - AAGGATAT--CAAA--AAAT---------------------------------------------------------------------TAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATATTAG-TTGGAACAGCA--------------------------------------------ACAATGTATTTAAAAACCTTTAAGTCTTAAGTTCAAAATTTACAC-----------------------------------------TTCTTTCCTACAGTTTTAGATCGTTTGCCATTGAGCTGGCGGGA------------------------ATTGC--TAGTATTGT--------------------------------------------------------------------------------------------------------------------------------------------------------CCTGG
droWil2 scf2_1100000004585:5647596-5647778 + AAAGTAAA--TTT--------T---------------------------------------------------TGAAGTGTTTGAAAAATGCATTGTTAAATTTTCGTCATAAAACAAACGTTTTTTTTCAAAGTATAATTTTTTTTTTTTTTAACTTTCAATAACTATTTTTTTTTTTTAACTTGTTTGAAATTTATT---------------------ATTTGTTTCAAAAATTACGATTTGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGT--TACATCTAA--------------------------------------------------------------------------------------------------------------------------------------------------------GCCGG
dp5 XL_group1e:566341-566430 - CTTTCAAC--TAA----GTTTA---------------------------------------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAGTGCGAAATTTTTCGTACACATA------------CAA--------------------------------------------AACTACACGTTAAATTTATTTAATTGTCTTCTTTTTACA-------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT
droPer2 scaffold_4614:1144-1355 + TGTTGTAT--ATTGAGAGTGC---CTTTAG----------------TTTGTAAAAAGACACCCTGTTTTCCGGCAAGT------------------------------------------------------------------------------------------------------------------------------------CATTAGACTCATCCATTTTCGACAGGCAGCAGTGAGCAAAGCACAAAGAAGAATCGAA---A---AACCAACCGTTTGATTTATGTTATGTTTAGTGGAT---------AATTTTCAC-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAATTGTTTATTTCCAAATTGTTATTG------------------------ACGAT--CACGTCGGG--------------------------------------------------------------------------------------------------------------------------------------------------------GTCAC
droAna3 scaffold_9543:660-770 + TCTTGAAA--TTAA--AATT-AAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCAATTTAAT-----------ACAACAACAAGAA--------------------------ATAAT------------AAAATTTATTTA------------------------ACAAAAACTTAAATAAAATATTAAATCTTAAAAATTGCA-------------------------------------------------------------------------------TTGT--------------------------------------------------------------------------------------------------------------------------------------------------------T--TT
droBip1 scf7180000396575:481671-481859 + ACCATTACATATT----------------------------------------------------------CTTTAAGCACTGAGAGAAAATATT------TTG------------------------------------------------------------------------------------------------------------------------------C-A--------------------------------------------------------------------------ATGCAGAAATAGATATTAAGAG-ATATCT-----------------------A---------------------------------------TAGATCATAAGAAGGTCTTATAGGTC-------------------------------------------------------------------------------------------------------------------------------------TTTATTATAAAATAAAACACTTTTTATATATTTGTTGTGAATAATTCAATATTTTATTGTTTTTTAATATTATTACAAGTTCTTAA---------------------------------------------------------------------------C-TTTAG
droKik1 scf7180000302414:509623-509684 + TTAAGAAA--AAAT------------------------------------------------------------------------------ATT------TAG------------------------------------------------------------------------------------------------------------------------------A-G--------------------------------------------------------------------------CTTTTAAATTTAATATTTAAA---------AT----------------ATTTA--------------------------------------------------------------------------------------------AA-------------------------------TATTTT-----------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------AAACA
droFic1 scf7180000453838:626547-626632 + AAACGTGT--GTTGATTATTT---GTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTCCAAAGCTTCACCTCTTTTGCTGCTAAAATTTCACGA------------------------ATAGC--AACCATTGT--------------------------------------------------------------------------------------------------------------------------------------------------------TTTAG
droEle1 scf7180000487575:727-894 - TTAGTATA--TTTT--AGTA-TATTT-------------------------T--AGTAT-------ATTTTAGTATATTTTTAAGTATATTCATA------TTT------------------------------------------------------------------------------------------------------------------------------A-T--------------------------------------------------------------------------ATATATTTAAGTATATTTAAGT-ATATTTAAGTATAT-----------TTAAGTATATT--TAAGTA---------------------TATT------------TAA-----------------------------GT------ATA--------------------------------------------------TTTA--AGTATATTTAAGTATATTT------------------------AAGTA--TATTTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------ATATT
droRho1 scf7180000776770:38576-38814 + AATTGGTT--ATTATTCCT----------------------TGCTATTAACA--TTTTT-------ATATTGA---ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAGCATATTGATGTAATCTA-AA--TTAACTTATCGTTGCGAATACATTATGTATTGC-----ATGTATTGATTTTTTCAT-AGATTCAATGATGC-----------A---------------------------------------------------------CTTTTTCAA-------------------------------ATGTTAATTACATATTTTTATTTTTTGGCTGTATTTATTTATCA-------------------------------GTTTTCGAATTCGCCCCACTGTTTGACAAA--AGCTATTAT--------------------------------------------------------------------GTCATAA---------------------------------------------------------------------------G-TATTG
droBia1 scf7180000302140:86115-86322 - TTTTGTTT--TAAA--AATT-TGTTT--------------------------------------------------------------------T------TTA-----------------------------------------------------------------------TTTTTAAGAAATTTAAATTTTATTT-CTGTTAAATT-------AAATTTATTTTAAGAGTAAAGGTTTTAGAAGATTTTATCTAAAAGACATG---A---AATC--------------------------------------------------------------AA-TCGGATAATTA--------------------------------------------CAGATGGAGATAAAGACTTGCGAACAGAGGGTTC-------------------------TTTTAAAAACTAGCTTTTTC----------------------------------TTACA-----------AA---------------------------CTTTAAAAAATT------------------------------------------------------------------------------------------------------------------------------------------------------CTAACAA
droTak1 scf7180000415773:715378-715498 + TTACAAGA--A-------AA---------------------------------------------------------------------TAAGTA------TTC------------------------------------------------------------------------------------------------------------------------------A-A--------------------------------------------------------------------------ACTTAAAAATAAATATTTAAAT-AATTTTAAGAGTAT-----------T------------TTAATT----------------------------------------------------------CAATATTTTCACACTATTCATATACTATTAAACTATTAGATTTTTC--------------------------------------------------------------------------------------TTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------TATTT
droEug1 scf7180000408781:4265-4385 + TGTTTTTT--CTTATTATAAC---ATATAA----------------T------------------------------------------TAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATAAATATATT-----------TACATATGTATAA--------------------------ATGTA------------CAATTTTATAAT------------------------GTGTATATTTTAATGAAATATTATATGTTTTTTACA---------------------------------------------------------------------------------ATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------TTTTT
dm3 chr3L:23030825-23030942 + ATAATGTT-CATT----------------------------------------------------------GTCCGAGTAGAAAGAAGGTAAATT------T---------------------------------------------------------------------------------------------AATTT-TT------------------------------------------------------------------------------------------------GTTTAATTG-----------AAATTCAAT-TATTTGTAAT----------------ATT---------------------------------------------------------------------------------------------ATA--------------------------------------------------------TTTCGCTAAAATGTAATAC------------------------ATGGCTTTAACACAGA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAAT
droSim2 2l:10059408-10059477 + ATTTTTCT--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAACCACAGCTTTGGTTCTTTTGTCGCTCAACTCTCACGG------------------------ATAGC--AGCTGTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------CCTAA
droSec2 scaffold_3:5808707-5808795 + ATACTAAA--TCTA--AACT-CATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTC-------------------------------------------TTCAACCACAGCTTTGGTTCTTTTGTCGCTCAACTCTCGCGG------------------------ATAGC--AGCTGTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------CCTAA
droYak3 2R:543234-543488 - TGTTTTCT--TATA---------------G----------------TTAATACAAATATATTTTATAT------------------------------------------------------------------------------------------------------------TAA-------------------------------------------------------------------TGAATTATTTAGAATAAGTTTCAAATTTTCGCTTTCCGTTTTAAATATAATATATTTTGTAGATTAGGGGTTAATATTTTATT-GTTTTTAATAATGT-----------A------------TTTGTTGAGGGCAA---------------------------AAAATA-----------------------TTTGAGGTTGTTCGTTTTGTA---ATATTTTAA--------------TCTTTT---GTAAT-CTTTTTTATTGAGCGTTCTA--CTTACAGTTTTCAATTATTTTTC----------GAT--AAC--CGGT--------------------------------------------------------------------------------------------------------------------------------------------------------TCAAA
droEre2 scaffold_4929:10989702-10989862 + AAAGAGGT--GGGT--------------------------------------------------------------------------------A------TTCACGTTTCGAAACCACTTTCCTTTTATTCAGGGTGACTTT----------------------------------------------------CATTTATT------------------------------------------------------------------------------------------------ATCTAAATG-----------TAAACTCAA-TTTTTAACAT----------------CTTAT--------------------------------------------------------------------------------------------GA-------------------------------TCTTTAACTACAGCTTTTCTTCGTTTGTCGCTCAAATCTCACGG------------------------ATAGC--AACCGTCGT--------------------------------------------------------------------------------------------------------------------------------------------------------CTTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AGCCTTCT--TAGT--AACTA---AATTGGTTACTATTGCTTGCTATATACT--GTTAT-------ATATTGCTTTAGTTTTAAGAAGGTATATT------TTG------------------------------------------------------------------------------------------------------------------------------T-C--------------------------------------------------------------------------GTTTGGAAATTGATATTTAAAT-CCTTTTAATAATAT-----------TTAACAGTGATAT--------------------------ACATA------------CAATTTTTTTCA------------------------GAATAGAAACTAATCAAATATTAAATGTGTATAATTATTTTCTTTTAACAGCTTACGATTGTTTGTTACAAAGCTTTTAATG------------------------ATAGC--GACAACGGT--------------------------------------------------------------------------------------------------------------------------------------------------------GCTAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGATTGTTTGTTACAAAGCTTT..........................................................................................................................................................................................................2413.003000000000000000000000000001000100000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATG------------------------ATAGC--GACAACGGT--------------------------------------------------------------------------------------------------------------------------------------------------------GCTAG2512.002000000000000000000000000000100000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATG------------------------ATAGC--GACAACGGT--------------------------------------------------------------------------------------------------------------------------------------------------------G....2011.001000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGATTGTTTGTTACAAAGCTT...........................................................................................................................................................................................................2411.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAGCTTTTAATG------------------------ATAGC--......................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACGATTGTTTGTTACAAAGCTTT..........................................................................................................................................................................................................2511.001000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------------ATAGC--GACAACGGT--------------------------------------------------------------------------------------------------------------------------------------------------------GCTAG2111.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACAAAGCTTTTAATG------------------------ATAGC--GA....................................................................................................................................................................2611.001000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAATG------------------------ATAGC--GACAACGG..............................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTACGATTGTTTGTTACAAAGCTT...........................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATG------------------------ATAGC--GACAACGGT--------------------------------------------------------------------------------------------------------------------------------------------------------GCTAG2611.001000000000000000000000000000000000000000100000000000000000000000
droMoj3
ATTGTTGCTTCTTATTAATTT---ATATTATTTTTATTATTTTACATATATT--ATTAT-------ATATAT------------------------------------------------------------------------------------------------------------------------------------------GATTATATATTTCTATTATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTAG-------------------------------ATTTTGATTTTATTAT------------------------------------------ATTATTTATTTATTGTCT------------------------TTTGT--TATTAT-----------------------------------------------------------------TATTAATTTCTTTATATATAATATAATTATATATATAATATTATATACAATATATATATATATATAATTTAATTTGAATTTGTATTATCTATTAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AAGGATAT--CAAA--AAAT---------------------------------------------------------------------TAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATATATTAG-TTGGAACAGCA--------------------------------------------ACAATGTATTTAAAAACCTTTAAGTCTTAAGTTCAAAATTTACAC-----------------------------------------TTCTTTCCTACAGTTTTAGATCGTTTGCCATTGAGCTGGCGGGA------------------------ATTGC--TAGTATTGT--------------------------------------------------------------------------------------------------------------------------------------------------------CCTGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
AAAGTAAA--TTT--------T---------------------------------------------------TGAAGTGTTTGAAAAATGCATTGTTAAATTTTCGTCATAAAACAAACGTTTTTTTTCAAAGTATAATTTTTTTTTTTTTTAACTTTCAATAACTATTTTTTTTTTTTAACTTGTTTGAAATTTATT---------------------ATTTGTTTCAAAAATTACGATTTGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGT--TACATCTAA--------------------------------------------------------------------------------------------------------------------------------------------------------GCCGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
dp5
CTTTCAAC--TAA----GTTTA---------------------------------------------------TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGAGTGCGAAATTTTTCGTACACATA------------CAA--------------------------------------------AACTACACGTTAAATTTATTTAATTGTCTTCTTTTTACA-------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TGTTGTAT--ATTGAGAGTGC---CTTTAG----------------TTTGTAAAAAGACACCCTGTTTTCCGGCAAGT------------------------------------------------------------------------------------------------------------------------------------CATTAGACTCATCCATTTTCGACAGGCAGCAGTGAGCAAAGCACAAAGAAGAATCGAA---A---AACCAACCGTTTGATTTATGTTATGTTTAGTGGAT---------AATTTTCAC-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAATTGTTTATTTCCAAATTGTTATTG------------------------ACGAT--CACGTCGGG--------------------------------------------------------------------------------------------------------------------------------------------------------GTCACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCCAAATTGTTATTG------------------------ACGAT--C.....................................................................................................................................................................25150.274040000
.....................................................................................................................................................................................................................................................GCAAAGCACAAAGAAGAATCGAA---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.255050000
..................................................................TTTCCGGCAAGT------------------------------------------------------------------------------------------------------------------------------------CATTAGACTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCCAAATTGTTATTG------------------------ACGAT--......................................................................................................................................................................23150.071010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCCAAATTGTTATTG------------------------ACGAT--......................................................................................................................................................................24150.071010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCCAAATTGTTATTG------------------------ACGAT--CACGT.................................................................................................................................................................29150.071010000
...............................................................................................................................................................................................................................CATTTTCGACAGGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
.....................................................................................................................................................................................................................................................................................................................T---------AATTTTCAC-TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTATAATTGTT........................................................................................................................................................................................................................24200.051010000
...........................TAG----------------TTTGTAAAAAGACACCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
........................................................................................................................................................................................................................ACTCATCCATTTTCGACAGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.......T--ATTGAGAGTGC---CTTTAG----------------TTTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
........................................................................................................................................................................................................................ACTCATCCATTTTCGACAGGCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
........................................................................................................................................................................................................................ACTCATCCATTTTCGACAGGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
droAna3
TCTTGAAA--TTAA--AATT-AAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTCAATTTAAT-----------ACAACAACAAGAA--------------------------ATAAT------------AAAATTTATTTA------------------------ACAAAAACTTAAATAAAATATTAAATCTTAAAAATTGCA-------------------------------------------------------------------------------TTGT--------------------------------------------------------------------------------------------------------------------------------------------------------T--TTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACCATTACATATT----------------------------------------------------------CTTTAAGCACTGAGAGAAAATATT------TTG------------------------------------------------------------------------------------------------------------------------------C-A--------------------------------------------------------------------------ATGCAGAAATAGATATTAAGAG-ATATCT-----------------------A---------------------------------------TAGATCATAAGAAGGTCTTATAGGTC-------------------------------------------------------------------------------------------------------------------------------------TTTATTATAAAATAAAACACTTTTTATATATTTGTTGTGAATAATTCAATATTTTATTGTTTTTTAATATTATTACAAGTTCTTAA---------------------------------------------------------------------------C-TTTAGSizeHit CountTotal NormTotal
No Reads
droKik1
TTAAGAAA--AAAT------------------------------------------------------------------------------ATT------TAG------------------------------------------------------------------------------------------------------------------------------A-G--------------------------------------------------------------------------CTTTTAAATTTAATATTTAAA---------AT----------------ATTTA--------------------------------------------------------------------------------------------AA-------------------------------TATTTT-----------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------AAACASizeHit CountTotal NormTotal
No Reads
droFic1
AAACGTGT--GTTGATTATTT---GTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTTTCCAAAGCTTCACCTCTTTTGCTGCTAAAATTTCACGA------------------------ATAGC--AACCATTGT--------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGSizeHit CountTotal NormTotal
No Reads
droEle1
TTAGTATA--TTTT--AGTA-TATTT-------------------------T--AGTAT-------ATTTTAGTATATTTTTAAGTATATTCATA------TTT------------------------------------------------------------------------------------------------------------------------------A-T--------------------------------------------------------------------------ATATATTTAAGTATATTTAAGT-ATATTTAAGTATAT-----------TTAAGTATATT--TAAGTA---------------------TATT------------TAA-----------------------------GT------ATA--------------------------------------------------TTTA--AGTATATTTAAGTATATTT------------------------AAGTA--TATTTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------ATATTSizeHit CountTotal NormTotal
No Reads
droRho1
AATTGGTT--ATTATTCCT----------------------TGCTATTAACA--TTTTT-------ATATTGA---ATTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAGCATATTGATGTAATCTA-AA--TTAACTTATCGTTGCGAATACATTATGTATTGC-----ATGTATTGATTTTTTCAT-AGATTCAATGATGC-----------A---------------------------------------------------------CTTTTTCAA-------------------------------ATGTTAATTACATATTTTTATTTTTTGGCTGTATTTATTTATCA-------------------------------GTTTTCGAATTCGCCCCACTGTTTGACAAA--AGCTATTAT--------------------------------------------------------------------GTCATAA---------------------------------------------------------------------------G-TATTGSizeHit CountTotal NormTotal
No Reads
droBia1
TTTTGTTT--TAAA--AATT-TGTTT--------------------------------------------------------------------T------TTA-----------------------------------------------------------------------TTTTTAAGAAATTTAAATTTTATTT-CTGTTAAATT-------AAATTTATTTTAAGAGTAAAGGTTTTAGAAGATTTTATCTAAAAGACATG---A---AATC--------------------------------------------------------------AA-TCGGATAATTA--------------------------------------------CAGATGGAGATAAAGACTTGCGAACAGAGGGTTC-------------------------TTTTAAAAACTAGCTTTTTC----------------------------------TTACA-----------AA---------------------------CTTTAAAAAATT------------------------------------------------------------------------------------------------------------------------------------------------------CTAACAASizeHit CountTotal NormTotal
No Reads
droTak1
TTACAAGA--A-------AA---------------------------------------------------------------------TAAGTA------TTC------------------------------------------------------------------------------------------------------------------------------A-A--------------------------------------------------------------------------ACTTAAAAATAAATATTTAAAT-AATTTTAAGAGTAT-----------T------------TTAATT----------------------------------------------------------CAATATTTTCACACTATTCATATACTATTAAACTATTAGATTTTTC--------------------------------------------------------------------------------------TTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------TATTTSizeHit CountTotal NormTotal
No Reads
droEug1
TGTTTTTT--CTTATTATAAC---ATATAA----------------T------------------------------------------TAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATAAATATATT-----------TACATATGTATAA--------------------------ATGTA------------CAATTTTATAAT------------------------GTGTATATTTTAATGAAATATTATATGTTTTTTACA---------------------------------------------------------------------------------ATTTA--------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTSizeHit CountTotal NormTotal
No Reads
dm3
ATAATGTT-CATT----------------------------------------------------------GTCCGAGTAGAAAGAAGGTAAATT------T---------------------------------------------------------------------------------------------AATTT-TT------------------------------------------------------------------------------------------------GTTTAATTG-----------AAATTCAAT-TATTTGTAAT----------------ATT---------------------------------------------------------------------------------------------ATA--------------------------------------------------------TTTCGCTAAAATGTAATAC------------------------ATGGCTTTAACACAGA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................TCCGAGTAGAAAGAAGGTAAATT------T---------------------------------------------------------------------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
....TGTT-CATT----------------------------------------------------------GTCCGAGTAGAAAGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
............T----------------------------------------------------------GTCCGAGTAGAAAGAAGGTAAATT------T---------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....GTT-CATT----------------------------------------------------------GTCCGAGTAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TCCGAGTAGAAAGAAGGTAAATT------T---------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TT-CATT----------------------------------------------------------GTCCGAGTAGAAAGAAGGTAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............T----------------------------------------------------------GTCCGAGTAGAAAGAAGGTAAATT------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..AATGTT-CATT----------------------------------------------------------GTCCGAGTAGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................CCGAGTAGAAAGAAGGTAAATT------T---------------------------------------------------------------------------------------------AAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TCCGAGTAGAAAGAAGGTAAATT------T---------------------------------------------------------------------------------------------AATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC------------------------ATGGCTTTAACACAGA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAAT2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TAATGTT-CATT----------------------------------------------------------GTCCGAGTAGAAAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------------TTTCGCTAAAATGTAATAC------------------------ATGGCT.......................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................TCCGAGTAGAAAGAAGGTAAATT------T---------------------------------------------------------------------------------------------AAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC------------------------ATGGCTTTAACACAGA--------------------------------------------------------------------------------------------------------------------------------------------------------CT...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TCCGAGTAGAAAGAAGGTAAATT------T---------------------------------------------------------------------------------------------AATTT-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TCAAT-TATTTGTAAT----------------ATT---------------------------------------------------------------------------------------------ATA--------------------------------------------------------TTTCGC..................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TAATGTT-CATT----------------------------------------------------------GTCCGAGTAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......TT-CATT----------------------------------------------------------GTCCGAGTAGAAAGAAGGTAAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TT-CATT----------------------------------------------------------GTCCGAGTAGAAAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........TT----------------------------------------------------------GTCCGAGTAGAAAGAAGGTAAATT------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TT-CATT----------------------------------------------------------GTCCGAGTAGAAAGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TTAATTG-----------AAATTCAAT-TATTTGTAAA----------------...................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATTTTTCT--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAACCACAGCTTTGGTTCTTTTGTCGCTCAACTCTCACGG------------------------ATAGC--AGCTGTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------CCTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCAACTCTCACGG------------------------ATAGC--AGCTG.................................................................................................................................................................2611.00100010000000000000
droSec2
ATACTAAA--TCTA--AACT-CATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCTC-------------------------------------------TTCAACCACAGCTTTGGTTCTTTTGTCGCTCAACTCTCGCGG------------------------ATAGC--AGCTGTTGT--------------------------------------------------------------------------------------------------------------------------------------------------------CCTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTCGCGG------------------------ATAGC--AGCT..................................................................................................................................................................1911.0011000
droYak3
TGTTTTCT--TATA---------------G----------------TTAATACAAATATATTTTATAT------------------------------------------------------------------------------------------------------------TAA-------------------------------------------------------------------TGAATTATTTAGAATAAGTTTCAAATTTTCGCTTTCCGTTTTAAATATAATATATTTTGTAGATTAGGGGTTAATATTTTATT-GTTTTTAATAATGT-----------A------------TTTGTTGAGGGCAA---------------------------AAAATA-----------------------TTTGAGGTTGTTCGTTTTGTA---ATATTTTAA--------------TCTTTT---GTAAT-CTTTTTTATTGAGCGTTCTA--CTTACAGTTTTCAATTATTTTTC----------GAT--AAC--CGGT--------------------------------------------------------------------------------------------------------------------------------------------------------TCAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTTGTTCGTTTTGTA---ATATT...................................................................................................................................................................................................................................................................2520.50101000000000
................................................................................................................................................................................................................................................................................TTTCGCTTTCCGTTTTAAATATAATA............................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50101000000000
...............................................................................................................................................................................................................................................................................TTTTCGCTTTCCGTTTTAAATATAATA............................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50101000000000
..................................................................................................................................................................................................................................................................................................................................................................................TGTTGAGGGCAA---------------------------AAAATA-----------------------TTTGAG..........................................................................................................................................................................................................................................................................................2420.50101000000000
.......................................................................................................................................................................................................................................................................................................................AGGGGTTAATATTTTATT-GTTTTTA.....................................................................................................................................................................................................................................................................................................................................................................................................2520.50101000000000
droEre2
AAAGAGGT--GGGT--------------------------------------------------------------------------------A------TTCACGTTTCGAAACCACTTTCCTTTTATTCAGGGTGACTTT----------------------------------------------------CATTTATT------------------------------------------------------------------------------------------------ATCTAAATG-----------TAAACTCAA-TTTTTAACAT----------------CTTAT--------------------------------------------------------------------------------------------GA-------------------------------TCTTTAACTACAGCTTTTCTTCGTTTGTCGCTCAAATCTCACGG------------------------ATAGC--AACCGTCGT--------------------------------------------------------------------------------------------------------------------------------------------------------CTTAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCGTTTGTCGCTCAAATCTCACGG------------------------.............................................................................................................................................................................2719.0090000009
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTTGTCGCTCAAATCTCACGG------------------------A............................................................................................................................................................................2616.0060000006
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCGTTTGTCGCTCAAATCTCACG......................................................................................................................................................................................................2611.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAATCTCACGG------------------------ATAGC--AACC..................................................................................................................................................................2411.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAATCTCACGG------------------------ATAG.........................................................................................................................................................................1911.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTCTTCGTTTGTCGCTCA...............................................................................................................................................................................................................2211.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTCAAATCTCACGG------------------------ATAGC--AACCG.................................................................................................................................................................2811.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAATCTCACGG------------------------ATAGC--A.....................................................................................................................................................................2111.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTCAAATCTCACGG------------------------ATAGC--AACCG.................................................................................................................................................................2711.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTCAAATCTCACGG------------------------ATAGC--AACC..................................................................................................................................................................2611.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGTTTGTCGCTCAAATCTCAC.......................................................................................................................................................................................................2411.0011000000

Generated: 05/19/2015 at 11:34 AM