dvi_20864

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATACATACGTACGGAAGCGGTCACACGGATGTCATTGTTACGGAAAATGGTACGAAAATTGAAAATTAATTTCAATTGCTTGCAATTGAAGCTGAAATATTATTCGACCAACATCAGCAGAGTTGGCCCTGATGGGTTGCGGTACCTAAAGCTAATGACAATTCAATGTGCGGGCTATAAATTTGTTTTGCGACCGCATTGTGTACCCCCATCAAATGGGTAGAGTTTTAACTAGCTTTGCATTTATTTA ************************************************...((((.........(((.(((((((((....))))))))).))).......)))).(((((.((....)))))))....((((((((((((.((.((.((((....(((......)))...)))).)).....)).)))))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	M061 embryo	V116 male body	V047 embryo	SRR060672 9x160_females_carcasses_total	SRR060659 Argentina_testes_total	SRR060679 140x9_testes_total	M028 head	SRR060667 160_females_carcasses_total	SRR060665 9_females_carcasses_total	SRR1106730 embryo_16-30h	SRR060687 9_0-2h_embryos_total	SRR060686 Argx9_0-2h_embryos_total	SRR060666 160_males_carcasses_total
......................CACACGGATGTCATTGTTACGGAAAAT..........................................................................................................................................................................................................	27	0	1	3.00	3	0	0	1	0	1	0	1	0	0	0	0	0	0	0
.........GTACGGAAGCGGTCACACGGAT............................................................................................................................................................................................................................	22	0	1	2.00	2	0	1	0	0	0	0	0	0	1	0	0	0	0	0
.ATACATACGTACGGAAGCGGT.....................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATACGTACGGAAGCGGTCACACGGATGTC.........................................................................................................................................................................................................................	29	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.ATACATACGTACGGAAGC........................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....ATACGTACGGAAGCGGTCACACG...............................................................................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...ACATACGTACGGAAGCGGTCACAC................................................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...................GGTCACACGGATGTCATTGTTACGGAA.............................................................................................................................................................................................................	27	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................GTCACACGGATGTCATTGTTACGGAA.............................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....ATACGTACGGAAGCGGTC....................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..TACATACGTACGGAAGCGGTCACA.................................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATACATACGTACGGAAGCG.......................................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................GGATGTCATTGTTACGGA..............................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......TACGTACGGAAGCGGTCACACGGATG...........................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CACGGATGTCATTGTTACG................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................GGATGTCATTGTTACGGAA.............................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GTACGGAAGCGGTCACACGGATGT..........................................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CGGTCACACGGATGTCATT......................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........GTACGGAAGCGGTCACAC................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................GTGTTGCGTTACCAAAAGCTA................................................................................................	21	3	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................CACACGGATGTCATT......................................................................................................................................................................................................................	15	0	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................CATTGTTACGGAAAATGATGCC....................................................................................................................................................................................................	22	3	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GTTGCGTTACCAAAAGCT.................................................................................................	18	2	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..........................................................................................................................GTTGGCCCAGATTGGTTG...............................................................................................................	18	2	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................AAATGGGTAGAGTTAGAACC.................	20	3	16	0.13	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................AAAATGGGTAGAGTTAGAAC..................	20	3	12	0.08	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................AGTTGAAGCTGAAAAATTA....................................................................................................................................................	19	2	17	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................GATGGGTTTCGTTACCAAA.....................................................................................................	19	3	18	0.06	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................ATTGTTACGGTAAATGATGC.....................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................ATGGGTAGAGTTAGAACCA................	19	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0

GTATGTATGCATGCCTTCGCCAGTGTGCCTACAGTAACAATGCCTTTTACCATGCTTTTAACTTTTAATTAAAGTTAACGAACGTTAACTTCGACTTTATAATAAGCTGGTTGTAGTCGTCTCAACCGGGACTACCCAACGCCATGGATTTCGATTACTGTTAAGTTACACGCCCGATATTTAAACAAAACGCTGGCGTAACACATGGGGGTAGTTTACCCATCTCAAAATTGATCGAAACGTAAATAAAT ************************************************...((((.........(((.(((((((((....))))))))).))).......)))).(((((.((....)))))))....((((((((((((.((.((.((((....(((......)))...)))).)).....)).)))))))).))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V053 head	SRR060665 9_females_carcasses_total	SRR060681 Argx9_testes_total
.....................................................................................................................................................GTCGATTACTCTCAAGTTACACG...............................................................................	23	3	2	0.50	1	1	0	0
......................................................................................................................................CACAACGCAATGGTTTTCGAT................................................................................................	21	3	2	0.50	1	0	1	0
........................................................................................................................CTCACCCGGGGCTACCGAAC...............................................................................................................	20	3	2	0.50	1	1	0	0
................................................................................................................................GGACTACACAATGCCATTGA.......................................................................................................	20	3	4	0.25	1	0	0	1

Species	Coordinate	ID	Alignment
droVir3	scaffold_13049:20943233-20943483 +	dvi_20864	CATACATACGTACGGAAGCGGTCACACGGATGTCATTGTTACGGAAAATGGTA-------------------------CGA-AAATTGAAAATTAATT-TC--AATTGCTTGCAATTGAAGCTGAAATATTATTCGACCA----------------------------------------------------------------------ACATCAGCAGAGTTGGCCCTGATGGGTTGCGGTACCTAAAGCTAATGACAATTC--AATGTGCGGGCTATAAATTTGTTTTGCGACCGCATTGTGTACCCCCATC-----------------AA-------------ATGGGTAG----AGTTTTAACTAGCTTTGCATT----TATTTA
droMoj3	scaffold_6680:15296913-15297210 +		CATACATACATACGGCAGCGGTCACACGGATGTCATTGTTACCGAAAATGGTA-------------------------TGA-AAATTGAAAATTAATTTTC--AATTGCTCGCAATCGAAGCTGAAAAATGATTT--------------------TAGCAGTAAAGCCGGATAGGGCCGGGGGGCAGGGGGCAGGG-GGCAACGGGTCCTAAA-----------------------------TACCTATAGCTAATGACAATTC--AATGTGCGGGCTATAAATTAGTTTTGCCAGTGCTTTGTGTTGCCC-------AC-TATGCGATCTATGGTGGGTTTATGCCATGGGCAGCAACAGCTCTGGCTAGATTTATAGA----TGTGTA
droGri2	scaffold_15110:22754405-22754673 -		CATACATACATACGGAAGCGGTCACACGGATGTCATTGTTACGGAAAATGGTA-------------------------CGA-AAATTGAAAATTAATT-TC--AATTGCTTGCAATTGATGCAGAAAAATTAGTCGACCATGAGTCCAGCGATTTTAGGAG---------------------------GGGC------------------AAA-----------------------------TTCCTCACCCTAATGACATTTC--AATGTGCAGGTTATAAATTAGTTTAG-GACAGCATTGC----CCCCCTCCCCACGTCCGTAATATAAAGTGGATT-CCATTATTGGCAGCGCCAG----------TTTGGCATTCTGCGATTTA
droWil2	scf2_1100000004762:1839741-1839936 -		CATACATACATATGGCAGCGGGCATACCGATGTCATTGTTACCGAAAATGGTAAGCCAGAGAGTTTTTGCGA-TTGTTC----AATTGAAAATTAATT-TCACAATTGCTTGCAATTGAAGCGGAAAGAAG-T---------------------GCAAAAA---------------------------GGGCAAGGATGC-------------------------------------------------AACTAATGAGCATTCACAATGTGCGGGCTATAAATTT--------------TCGTGTGCCCCTAT----------------------------------------------------------------------------
dp5	XR_group8:6047726-6047841 +		CATCCATACATTCGGCAGCGGCCACACCGATGTCATTGTAACGGAAAACGGTAAC---------------GAAACGCTCGACAAATTGAAAATTAATT-TC--TATTGCTTGCAATCGAAGCAGAAAAATCGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_45:436254-436369 -		CATCCATACATTCGGCAGCGGCCACACCGATGTCATTGTAACGGAAAACGGTAAC---------------GAAACGCTCGACAAATTGAAAATTAATT-TC--TATTGCTTGCAATCGAAGCAGAAAAATCGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13337:21108444-21108555 +		CATCCATACGTACGGCAGTGGCCACACCGATGTCATTGTTACGGAAAATGGTAAC---------------GA-ACGCTGGA-AAATTGAAAATTAATT-TC--GATTTCT-GCCACCGATGTTGAAAAATTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396707:321873-321984 -		CATCCATACGTACGGCAGTGGCCACACAGATGTCATTGTTACGGAAAACGGTAAC---------------GA-ACGCTCGA-AAATTGAAAATTAATT-TC--GATTTCT-GCCACCGAAGTTGAAAAATTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302441:2088810-2088920 -		CATCCATACGTTCGGCAGTGGCCACACCGACGTCATTGTCACGGAAAACGGTAAC---------------GAAATGTTGCA-AAATTGAAAATTAATT-TC--GATTGCCAGCAGTCGAAGCTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000453945:130856-130966 +		CATCCATACGTTCGGCAGCGGCCACACCGATGTCATTGTTACGGAAAACGGTAAC---------------GAAATGTTCGA-AAATTGAAAATTAATT-TC--TATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491199:859868-859983 -		CATCCATACGTACGGCAGCAGCCACACGGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTCGGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAATGGTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000759602:24132-24242 +		CATCCATACGTACGGCAGCAGCCACACCGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTGGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000302377:1309823-1309933 -		CATCCATACGTACGGCAGCAGCCACACCGATGTCATTGTTACGGAAAATGGTAAC---------------GAAACTCTGGG-AAATCGAAAATTAATT-TC--GATTGCCGGCAATCGGAGCCGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000414002:122826-122936 +		CATCCATACGTACGGCAGCAGCCACACCGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTGGG-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409472:809879-809989 +		CATCCATACGTACGGCAGCAGCCACACCGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGCTGCA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr3L:21974246-21974353 +		CATCCATACGTACGGCAGCAGCCACACGGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTCGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGCTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2	3l:21489475-21489585 +		CATCCATACGTACGGCAGCAGCCACACGGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTCGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_11:1899859-1899969 +		CATCCATACGTACGGCAGCAGCCACACGGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTCGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	3L:22302208-22302318 +		TATCCATACGTACGGCAGCAGCCACACGGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTGGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4784:21649029-21649139 +		CATCCATACGTACGGCAGCAGCCACACGGATGTCATCGTAACGGAAAATGGTAAC---------------GAAATGTGGGA-AAATGGAAAATTAATT-TC--GATTGCCGGCAGTCGAAGCTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

CATACATACGTACGGAAGCGGTCACACGGATGTCATTGTTACGGAAAATGGTA-------------------------CGA-AAATTGAAAATTAATT-TC--AATTGCTTGCAATTGAAGCTGAAATATTATTCGACCA----------------------------------------------------------------------ACATCAGCAGAGTTGGCCCTGATGGGTTGCGGTACCTAAAGCTAATGACAATTC--AATGTGCGGGCTATAAATTTGTTTTGCGACCGCATTGTGTACCCCCATC-----------------AA-------------ATGGGTAG----AGTTTTAACTAGCTTTGCATT----TATTTA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................CACACGGATGTCATTGTTACGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........GTACGGAAGCGGTCACACGGAT.......................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATACATACGTACGGAAGCGGT................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATACGTACGGAAGCGGTCACACGGATGTC....................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATACATACGTACGGAAGC...................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....ATACGTACGGAAGCGGTCACACG..........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...ACATACGTACGGAAGCGGTCACAC...........................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GGTCACACGGATGTCATTGTTACGGAA........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GTCACACGGATGTCATTGTTACGGAA........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....ATACGTACGGAAGCGGTC...............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TACATACGTACGGAAGCGGTCACA............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATACATACGTACGGAAGCG..................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................GGATGTCATTGTTACGGA.........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TACGTACGGAAGCGGTCACACGGATG......................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CACGGATGTCATTGTTACG...........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GGATGTCATTGTTACGGAA........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GTACGGAAGCGGTCACACGGATGT.....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CGGTCACACGGATGTCATT.................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........GTACGGAAGCGGTCACAC...........................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CACACGGATGTCATT.................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droMoj3

CATACATACATACGGCAGCGGTCACACGGATGTCATTGTTACCGAAAATGGTA-------------------------TGA-AAATTGAAAATTAATTTTC--AATTGCTCGCAATCGAAGCTGAAAAATGATTT--------------------TAGCAGTAAAGCCGGATAGGGCCGGGGGGCAGGGGGCAGGG-GGCAACGGGTCCTAAA-----------------------------TACCTATAGCTAATGACAATTC--AATGTGCGGGCTATAAATTAGTTTTGCCAGTGCTTTGTGTTGCCC-------AC-TATGCGATCTATGGTGGGTTTATGCCATGGGCAGCAACAGCTCTGGCTAGATTTATAGA----TGTGTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........CATACGGCAGCGGTCACAC...........................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
...........ACGGCAGCGGTCACACGGATGTC....................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.........ATACGGCAGCGGTCACACGG.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
......................CACACGGATGTCATTGTTACCGAAA.......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................CACACGGATGTCATTGTTACC...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.........ATACGGCAGCGGTCACACGGATGTC....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............GCAGCGGTCACACGGATGTC....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........ATACGGCAGCGGTCACACGGATGT.....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.ATACATACATACGGCAGCGGTCACACGG.........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........TACGGCAGCGGTCACACGGATGTC....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droGri2

CATACATACATACGGAAGCGGTCACACGGATGTCATTGTTACGGAAAATGGTA-------------------------CGA-AAATTGAAAATTAATT-TC--AATTGCTTGCAATTGATGCAGAAAAATTAGTCGACCATGAGTCCAGCGATTTTAGGAG---------------------------GGGC------------------AAA-----------------------------TTCCTCACCCTAATGACATTTC--AATGTGCAGGTTATAAATTAGTTTAG-GACAGCATTGC----CCCCCTCCCCACGTCCGTAATATAAAGTGGATT-CCATTATTGGCAGCGCCAG----------TTTGGCATTCTGCGATTTA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........CATACGGAAGCGGTCACA............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
..............GAAGCGGTCACACGGATGTC....................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1
.................................CATTGTTACGGAAAATGA...................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	1	0

droWil2

CATACATACATATGGCAGCGGGCATACCGATGTCATTGTTACCGAAAATGGTAAGCCAGAGAGTTTTTGCGA-TTGTTC----AATTGAAAATTAATT-TCACAATTGCTTGCAATTGAAGCGGAAAGAAG-T---------------------GCAAAAA---------------------------GGGCAAGGATGC-------------------------------------------------AACTAATGAGCATTCACAATGTGCGGGCTATAAATTT--------------TCGTGTGCCCCTAT----------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.ATACATACATATGGCAGCGGGC...............................................................................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	2	2	1	0	0
....CATACATATGGCAGCGGGC...............................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	1	2	0	0
.......................ATACCGATGTCATTGTTACC...........................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
.......................ATACCGATGTCATTGTTACCGAAAAT.....................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	2	0
...ACATACATATGGCAGCGG.................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.....ATACATATGGCAGCGGGC...............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...............................GTCATTGTTACCGAAAAT.....................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.....ATACATATGGCAGCGGGCA..............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.........ATATGGCAGCGGGCATACCGAT.......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
............................GATGTCATTGTTACCGAA........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...ACATACATATGGCAGCGGGCA..............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...ACATACATATGGCAGCGGGC...............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.........ATATGGCAGCGGGCATACA..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.......................ATACCGATGTCATTGTTACCG..........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0

dp5

CATCCATACATTCGGCAGCGGCCACACCGATGTCATTGTAACGGAAAACGGTAAC---------------GAAACGCTCGACAAATTGAAAATTAATT-TC--TATTGCTTGCAATCGAAGCAGAAAAATCGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................GCCACACCGATGTCATTGTAACGGA.........................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0
...CCATACATTCGGCAGCGGCCAC.............................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	1	0	1	0	0	0	0
..TCCATACATTCGGCAGCGGCCAC.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..TCCATACATTCGGCAGCGGCC...............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
........CATTCGGCAGCGGCCACACCGATGTC....................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........CATTCGGCAGCGGCCACAC...........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CATCCATACATTCGGCAGCGGCCACACCGATGTCATTGTAACGGAAAACGGTAAC---------------GAAACGCTCGACAAATTGAAAATTAATT-TC--TATTGCTTGCAATCGAAGCAGAAAAATCGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................CCACACCGATGTCATTGTAAC............................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	1	0	0
...........................CGATGTCATTGTAACGGG.........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
CATCCATACATTCGGCAGC...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droAna3

CATCCATACGTACGGCAGTGGCCACACCGATGTCATTGTTACGGAAAATGGTAAC---------------GA-ACGCTGGA-AAATTGAAAATTAATT-TC--GATTTCT-GCCACCGATGTTGAAAAATTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.ATCCATACGTACGGCAGTGG.................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
......................CACACCGATGTCATTGTTACGGAAAATG....................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
.ATCCATACGTACGGCAGTGGCCACACC..........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................GGCCACACCGATGTCATT.................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.....................CCACACCGATGTCATTGTTACGGAA........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
.....ATACGTACGGCAGTGGCCACACCGA........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1

droBip1

CATCCATACGTACGGCAGTGGCCACACAGATGTCATTGTTACGGAAAACGGTAAC---------------GA-ACGCTCGA-AAATTGAAAATTAATT-TC--GATTTCT-GCCACCGAAGTTGAAAAATTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CATCCATACGTTCGGCAGTGGCCACACCGACGTCATTGTCACGGAAAACGGTAAC---------------GAAATGTTGCA-AAATTGAAAATTAATT-TC--GATTGCCAGCAGTCGAAGCTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CATCCATACGTTCGGCAGCGGCCACACCGATGTCATTGTTACGGAAAACGGTAAC---------------GAAATGTTCGA-AAATTGAAAATTAATT-TC--TATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CATCCATACGTACGGCAGCAGCCACACGGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTCGGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAATGGTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CATCCATACGTACGGCAGCAGCCACACCGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTGGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CATCCATACGTACGGCAGCAGCCACACCGATGTCATTGTTACGGAAAATGGTAAC---------------GAAACTCTGGG-AAATCGAAAATTAATT-TC--GATTGCCGGCAATCGGAGCCGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CATCCATACGTACGGCAGCAGCCACACCGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTGGG-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CATCCATACGTACGGCAGCAGCCACACCGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGCTGCA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

CATCCATACGTACGGCAGCAGCCACACGGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTCGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGCTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...CCATACGTACGGCAGCAGCCA..............................................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATCCATACGTACGGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................GATGTCATTGTTACGGAAAA......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CATACGTACGGCAGCAGCCACACGGAT.......................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GCCACACGGATGTCATTGTTACGGG.........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCCATACGTACGGCAGCAG.................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CGGATGTCATTGTTACGGAA........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TACGGCAGCAGCCACATT..........................................................................................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CATCCATACGTACGGCAGCAGCCACACGGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTCGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.ATCCATACGTACGGCAGC...................................................................................................................................................................................................................................................................................................................................................................................	18	1	12.00	12	0	11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATCCATACGTACGGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATCCATACGTACGGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATCCATACGTACGGCAGG...................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CACACGGATGTCATTGTTACGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................ATTAATT-TC--GATTGCCGGC.....................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GGATGTCATTGTTACGGAAAA......................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATCCATACGTACGGCAGCAGCCACACGGA........................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ACGGCAGCAGCCACACGGATGTCAT..................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ACACGGATGTCATTGTTACGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GTCATTGTTACGGAAAATG....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................ATT-TC--GATTGCCGGCAAT..................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CACACGGATGTCATTGTTACGGAAA.......................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATACGTACGGCAGCAGCCACACGGATGTC....................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GTACGGCAGCAGCCACACGGAT.......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...CCATACGTACGGCAGCAGCCACACGG.........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AGCCACACGGATGTCATTGTTACGGAA........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GTCATTGTTACGGAAAATGGTA.................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CACGGATGTCATTGTTAC............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CATACGTACGGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ACGGCAGCAGCCACACGGAT.......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....ATACGTACGGCAGCAGCC...............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AGCCACACGGATGTCATTGTTACGGAAA.......................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
CATCCATACGTACGGCAGC...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CATCCATACGTACGGCAGCAGCCACACGGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTCGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........ACGGCAGCAGCCACACGGATGTC....................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	4	0	0
.ATCCATACGTACGGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0
...........ACGGCAGCAGCCACACGGATGTCATTG................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
............................GATGTCATTGTTACGGAAAATGGT..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
.ATCCATACGTACGGCAGCAGCCACACG..........................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
........CGTACGGCAGCAGCCACACGGA........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
..............GCAGCAGCCACACGGATGTCATTGT...............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.ATCCATACGTACGGCAGCAGCCA..............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.ATCCATACGTACGGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..............................TGTCATTGTTACGGAAAATG....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
....................GCCACACGGATGTCATTGTTACGGAA........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
...........ACGGCAGCAGCCACACGGATGTCAT..................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
........................CACGGATGTCATTGTTACGGAAA.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.ATCCATACGTACGGCAGC...................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
...........................GGATGTCATTGTTACGGAAA.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
....................GCCACACGGATGTCATTGTTACG...........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
.ATCCATACGTACGGCAGCAT.................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
.........GTACGGCAGCAGCCACACGGAT.......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
.......................ACACGGATGTCATTGTTACGGAAAATGA...................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0

droYak3

TATCCATACGTACGGCAGCAGCCACACGGATGTCATTGTTACGGAAAATGGTAAC---------------GAAATGTTGGA-AAATTGAAAATTAATT-TC--GATTGCCGGCAATCGAAGTTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........ACGGCAGCAGCCACACGGATGTC....................................................................................................................................................................................................................................................................................................................................................................	23	2	1.50	3	0	1	0	0	0	0	2	0	0	0	0
......................CACACGGATGTCATTGTTACGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................	27	2	1.50	3	0	0	0	0	0	0	3	0	0	0	0
.........GTACGGCAGCAGCCACACGGAT.......................................................................................................................................................................................................................................................................................................................................................................	22	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
...............................GTCATTGTTACGGAAAATG....................................................................................................................................................................................................................................................................................................................................................	19	2	1.00	2	0	1	0	0	0	0	1	0	0	0	0
.........GTACGGCAGCAGCCACACGGA........................................................................................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
......................CACACGGATGTCATTGTTACG...........................................................................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	0	1	0	0	0	1	0	0	0	0
....CATACGTACGGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................	18	2	1.00	2	0	0	0	0	1	1	0	0	0	0	0
...................AGCCACACGGATGTCATTGT...............................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................TTGCCGGCAATCGAAGTTGA.........................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...........ACGGCAGCAGCCACACGGATGT.....................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................CCACACGGATGTCATTGTTACG...........................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
TATCCATACGTACGGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
..........................CGGATGTCATTGTTACGGAAAATG....................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.............GGCAGCAGCCACACGGATGT.....................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................GAAATGTTGGA-AAATTGAA............................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
....CATACGTACGGCAGCAGCC...............................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...........ACGGCAGCAGCCACACGGA........................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
........................CACGGATGTCATTGTTAC............................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0
........................CACGGATGTCATTGTTACGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.ATCCATACGTACGGCAGCAGCCACACG..........................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
....................GCCACACGGATGTCATTGTTACGGA.........................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.........GTACGGCAGCAGCCACACGGATGTC....................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...........ACGGCAGCAGCCACACGGATGTCATTG................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...............................GTCATTGTTACGGAAAATGGT..................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.........GTACGGCAGCAGCCACACG..........................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...........ACGGCAGCAGCCACACGGATGTCATT.................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..........TACGGCAGCAGCCACACGGATGTCATT.................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...........................GGATGTCATTGTTACGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
.......................ACACGGATGTCATTGTTACGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
...........................GGATGTCATTGTTACGGA.........................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.ATCCATACGTACGGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

CATCCATACGTACGGCAGCAGCCACACGGATGTCATCGTAACGGAAAATGGTAAC---------------GAAATGTGGGA-AAATGGAAAATTAATT-TC--GATTGCCGGCAGTCGAAGCTGAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.ATCCATACGTACGGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1	0
...................AGCCACACGGATGTCATCGTAACGGA.........................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	1	1	0
....................GCCACACGGATGTCATCGTAACGGAAA.......................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	2	0	0
....................GCCACACGGATGTCATCGTAACGGA.........................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	1	0	1	0	0
....................GCCACACGGATGTCATCGT...............................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0
.ATCCATACGTACGGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	1	0	0
.........GTACGGCAGCAGCCACACGGATGT.....................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	0	1	0	0
...................AGCCACACGGATGTCATCGT...............................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0	0
........................CACGGATGTCATCGTAACGGA.........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.....ATACGTACGGCAGCAGCCAC.............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.........................ACGGATGTCATCGTAACGGAAA.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
.......................ACACGGATGTCATCGTAACGGAAA.......................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
...................AGCCACACGGATGTCATCG................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.ATCCATACGTACGGCAGCAGCCACA............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
......................CACACGGATGTCATCGTAACG...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
............................GATGTCATCGTAACGGAAAATGA...................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.................GCAGCCACACGGATGTCATCGTAAC............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
........................CACGGATGTCATCGTAACGGAA........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
............................GATGTCATCGTAACGGAAAA......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...................AGCCACACGGATGTCATCGTA..............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
...CCATACGTACGGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...............................GTCATCGTAACGGAAAATGA...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..TCCATACGTACGGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........ACGGCAGCAGCCACACGGATGTCATC.................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.......................ACACGGATGTCATCGTAACGGAAAAT.....................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...............CAGCAGCCACACGGATGTCATCGT...............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.........................ACGGATGTCATCGTAACGGA.........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..........................CGGATGTCATCGTAACGGA.........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
....................GCCACACGGATGTCATCGTAACGGAA........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.....................CCACACGGATGTCATCGTAACG...........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.................GCAGCCACACGGATGTCATCGT...............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.........GTACGGCAGCAGCCACACGGATGTC....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
..........TACGGCAGCAGCCACACGGAT.......................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.ATCCATACGTACGGCAGCAGCCACAC...........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
...................AGCCACACGGATGTCATCGTAACGG..........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
............CGGCAGCAGCCACACGGAT.......................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.ATCCATACGTACGGCAGCAGCC...............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0

dvi_20864

scaffold_13049:20943283-20943433 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads