ID:

dvi_20834

 Coordinate:

scaffold_13049:20786769-20786919 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.9 -7.9 -7.8

Flybase annnotation

CDS [Dvir\GJ13895-cds]; exon [dvir_GLEANR_13750:1]; intron [Dvir\GJ13895-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGACGGTTTTGTTATGCAGCCTTGCTGCGACAAAGGCGAGCCCGCTGAGGTAAGTGCCCATTAATAATAATATTTGGCAACAACAAGCGGCAAGGAAGTTTCTAGTGTACGTTTTTATTTATTTGCGTTGGCGGTGCAAAAGAAAAACTAAATCACACACAAAAGAAAATGAAAATGCGTTGCAGCGCGAGATTAGCGCAAACGTAAGCAAAATACAGTTATATAGCATATACAGTTAGAAATATCAATC
************************************************************************.....((.((....(((.(((((.((((.................)))).))))))))....)))).....************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060681
Argx9_testes_total
 SRR060683
160_testes_total
 SRR060667
160_females_carcasses_total
 SRR060679
140x9_testes_total
 SRR060655
9x160_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060678
9x140_testes_total
 GSM1528803
follicle cells		 SRR060658
140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060689
160x9_testes_total
 V116
male body		 M027
male body		 M028
head
 M061
embryo
 SRR060654
160x9_ovaries_total
 SRR060657
140_testes_total
 SRR060659
Argentina_testes_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 V053
head
 SRR060673
9_ovaries_total
.....................................CGAGCCCGCTGAGGTAAGTGC................................................................................................................................................................................................. 21 0 1 7.00 7 0 0 0 1 1 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 1 0
......................TTGCTGCGACAAGGGCGAGC................................................................................................................................................................................................................. 20 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TGACGGTTTTGTTATGCAGCC..................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TTGCTGCGACAAGGGCGAG.................................................................................................................................................................................................................. 19 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CACGTTTTTATTTATTTGCGT.......................................................................................................................... 21 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CCCGCTGAGGTAAGTGCCCA.............................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GGCGAGCCCGCTGAGGTAAGTGAC................................................................................................................................................................................................ 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.TGACGGTTTTGTTGTGCAGCC..................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................GGCGGCAAGGAGGTTTCTAGT................................................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................AAAGGCGAGCCCGCTGAGGTA...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................TTTGCGTTGGCGGTGCAAAAG............................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GTTTTGTTATGCAGCCTTGCTGC.............................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TTGCTGCGACAAAGGCGAG.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTATTTGCGTTGGCGGTGCAA............................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CACGTTTTTATTTATTTGCGTTG........................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................GTGCGTCGCAGCGTGAGATTAGCG.................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................ATTTGGCAACAACAAGCGGC............................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AAGAAAATGAAAATGCGTTGC................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................CTAGTGCACGTTTTTATTTAT................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GGTTTTGTTATGCAGCCTTG.................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................TGCGACAAGGGCGAGCCCGCT............................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................ACACACAAAAGAAAATGAAAA........................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AGAAAATGAAAATGCGTTGC................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CCTTGCTGCGACAAAGGCGAGCCCGCTG........................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TACGTTTTTATTTATTTGCGT.......................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATATTTGGCAACAGCAAGCGG................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................CGAGCCCGCTGAGGTAAGTG.................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TATTTGCGTTGGCGGTTCAA............................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................GGCGAGCCCGCTGAGGTAAGTGCC................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
CTGACGGTTTTGTTATGCAGC...................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................GACAAAGGCGAGCCCGCTGAGCCT...................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TTGTTATGCAGCCTTGCTG............................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................TTGCTGCGACAAGGGCGAGCCTT.............................................................................................................................................................................................................. 23 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CCTTGCTGCGACAAAGGCGT................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ACAAAGGCGAGCCCGCTGAGG........................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TGAAAATGCGTTGCAGCGCG............................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TTTTGTTATGCAGCCTTGCTG............................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................GCAAGGAAGTTTCTAGTGCA............................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................ATTTATTTGCGTTGGCGG.................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TTGCTGCGACAAGGGCGAGCC................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................TGCTGCGACAAAGGCGAGCC................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................CTTGCTGCGACAAGGGCGAGC................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AATAATAATATTTGGCAACAA....................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................AGCCCGCTGAGGTAGGTGCCC............................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................GTATTTGGCAACAACAAGCGG................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TTGCTGCGACAAAGGCGAGC................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TTGCTGCGACAAAGGCGAGCC................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................TATTTGGCAACAACAAGCGGC............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................AGCCTTGCTGCGACCAAGGCG.................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........TTGTTATGCAGCCTTGCTTT.............................................................................................................................................................................................................................. 20 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TTGCTGCGACAGGGGCGGGC................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AATCACACACAATTGAAAA................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................GGTGAGGTAAGGGCCCAC............................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GACTGCCAAAACAATACGTCGGAACGACGCTGTTTCCGCTCGGGCGACTCCATTCACGGGTAATTATTATTATAAACCGTTGTTGTTCGCCGTTCCTTCAAAGATCACATGCAAAAATAAATAAACGCAACCGCCACGTTTTCTTTTTGATTTAGTGTGTGTTTTCTTTTACTTTTACGCAACGTCGCGCTCTAATCGCGTTTGCATTCGTTTTATGTCAATATATCGTATATGTCAATCTTTATAGTTAG
************************************************************************************************************.....((.((....(((.(((((.((((.................)))).))))))))....)))).....************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 M027
male body		 SRR060681
Argx9_testes_total
 V116
male body		 SRR060670
9_testes_total
 SRR060683
160_testes_total
 V053
head
 M061
embryo
 SRR060678
9x140_testes_total
 SRR060677
Argx9_ovaries_total
 SRR060654
160x9_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060667
160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060688
160_ovaries_total
 SRR060672
9x160_females_carcasses_total
 V047
embryo
........................................CGGTCGACTCGATTGACGGG............................................................................................................................................................................................... 20 3 20 4.70 94 76 0 2 1 0 0 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................TCGCCGTTCCTTCAAAGATC................................................................................................................................................. 20 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CGCTCGGGCGACTCCATTCAC.................................................................................................................................................................................................. 21 0 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................GGAACGACGCTGTTTCCGCTC.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CCGCTCGGGCGACTCCATTC.................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TGGGCGACTCCATTCACGGGTA............................................................................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................CGCAACGTCGCGCTCTAATCGC.................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GTTCGCCGTTCCTTCGAAGG................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GCACTCTGATCGCGTTTGC.............................................. 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CGACTCCGTTCACGGGTAATT.......................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................GGGCGACTCCATTCACGGGTA............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CTCGGGCGGCTCCGTTCACGG................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TCCGCTCGGGCGACTCCGTTC.................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TTTCTTTTTGATTTAGTGCGT........................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................TCGCCGTTCCTTCGAAGGTCA................................................................................................................................................ 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................GCTCGGGCGACTCCGTTCACG................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTGTTGTTCGCCGTTCCTTCA....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................CGCTGTTTCCGCTCGGGCGAC........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................GCGGCTCCGTTCACGGGTAAT........................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................CGCACTCTAATCGCGTTTGCATTCGTTT...................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GCTCGGGCGGCTCCATTCACGG................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................GGCGACTCCATTCACGGGTAA............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................CCGCTGTTTCCGCTCGGGCGAC........................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CGCCGTTCCTTCAAAGGTCAC............................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................GCGACCGCCACGTTTTCTTTT........................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................ATCGGGCGACTCCGTTCACGGGT.............................................................................................................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................GCTGTTTCCGCTCGGGCGAC........................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCGCCGTTCCTTCAAAGATCA................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CCGTTGTTGTTCGCCGTTCC........................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ACGGTTGTTGTGCGCCCTTCCT.......................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ACGCTGTTTCCGCTCGGGCGGC........................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................ACCATTCACGGGTGATTATT....................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AACCGTTGTTGTTCGCCGTTC............................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GGGCGACTCCATTCACGGGTAA............................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................CCGCTCGGGCGACTCCATTCA................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TCCTTCAAAGATCACATGCA.......................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GTTCGCCGTTCCTTCAAAGAT.................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................TGTTCGCCGTTCCTTCAAAGA................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................GACTCCATTCACGGGTAATTA......................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GCTGTTTCCGCTCGGGCGACT.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TGTTCGCCGTTCCTTCGGAGA................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................TCCGCTCGGGCGACTCCATTC.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AACGGTTGTTGTGCGCCCTTC............................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CTTCTTCGCAAGGTCGCGCTC........................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TACGGTTGTTGTGCGCCGTTC............................................................................................................................................................ 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TCCGTTCACGGGTAATAAATA...................................................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................GGGCGACTCTATTAGCGGG............................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CGTTGTGGTTCGCCGCTC............................................................................................................................................................ 18 2 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................CCTTCAAAGTTGGCATGC........................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:20786719-20786969 + dvi_20834 CTGACGGTTTTGTTATGCAGCCTTGCTGCGACAAAGGCGAGCCCGCTGAGGTAAGTGCCCATTAATAATAATATTT-----------------------------GGC------AACAACAAGC----GGCAAGGAAGTTTCTAGTGTACGTTTTTATTTATTTGCGTTGGCGGTGCAAAAGAAA--------AACTAAATCACACACAAAAGAAAATGAAAATGCGTTGCAGCGCGAGATTAGCGCAAACGTAAGCAAAAT-----ACAGTTATATAGCATATACAGTTAGA------------A-----ATATCAATC
droMoj3 scaffold_6680:8495874-8496056 + TTGACGATTTTATCATGCAGCCTTGCTGTGACAAATACGAGTCCTTTTAGGTGAGTTATTAC---CCACAATGTTTGTGAAATTAAACAAAGATAAACAAAATTAG-----------------------------------TCCATG----CTC----CT---------------------------------------------------------------------GCTACGCAAGATTTGCGTAAACGTAAGCAAAAATAGAAACAGTT-----------------ATAGTAAAAGGGAAAA-----CTGCGAATC
droGri2 scaffold_15110:11748499-11748770 - TTTACGATTTTATTATGCAGCATTGTTGTGACAAAAACGAGTCCATTCAGGTGAGTCTCTGC-----------TTTTTGAATTTAGGCAT-----------TTTAGGCGAACAAAACGACGGGCAGCAGGCAGGGAAATTTCCAGCG----CTT----TTGTTTGCGTTGGCGGTGCCAATGAAAAAAATAGAAACAAAAACAAAAACAAATGCAAAAAAGAAAACATTG---GCCAAAATTGGCATATATCTTAGCAAAAACTAAAAAAGTT--------AAGACAGTTGGAGC-------AAAACAGCAACCACAATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CTGACGGTTTTGTTATGCAGCCTTGCTGCGACAAAGGCGAGCCCGCTGAGGTAAGTGCCCATTAATAATAATATTT-----------------------------GGC------AACAACAAGC----GGCAAGGAAGTTTCTAGTGTACGTTTTTATTTATTTGCGTTGGCGGTGCAAAAGAAA--------AACTAAATCACACACAAAAGAAAATGAAAATGCGTTGCAGCGCGAGATTAGCGCAAACGTAAGCAAAAT-----ACAGTTATATAGCATATACAGTTAGA------------A-----ATATCAATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................CGAGCCCGCTGAGGTAAGTGC......................................................................................................................................................................................................................................................................2117.007000010002100000001000000000001000000000000000000000000000000100
.TGACGGTTTTGTTATGCAGCC..........................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000001000010000000000000000000000000000
.........................................CCCGCTGAGGTAAGTGCCCA...................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
................................AAAGGCGAGCCCGCTGAGGTA...........................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................TTTGCGTTGGCGGTGCAAAAG..........................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
......GTTTTGTTATGCAGCCTTGCTGC...................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................TTGCTGCGACAAAGGCGAG.......................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................TTATTTGCGTTGGCGGTGCAA.............................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................ATTT-----------------------------GGC------AACAACAAGC----GGC.............................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................AAGAAAATGAAAATGCGTTGC.........................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.....GGTTTTGTTATGCAGCCTTG.......................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................ACACACAAAAGAAAATGAAAA.................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
...................................................................................................................................................................................................................AGAAAATGAAAATGCGTTGC.........................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
....................CCTTGCTGCGACAAAGGCGAGCCCGCTG................................................................................................................................................................................................................................................................................2811.001100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TACGTTTTTATTTATTTGCGT........................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.....................................CGAGCCCGCTGAGGTAAGTG.......................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
...................................GGCGAGCCCGCTGAGGTAAGTGCC.....................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
CTGACGGTTTTGTTATGCAGC...........................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.............................GACAAAGGCGAGCCCGCTGAGCCT...........................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.........TTGTTATGCAGCCTTGCTG....................................................................................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
....................CCTTGCTGCGACAAAGGCGT........................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
..............................ACAAAGGCGAGCCCGCTGAGG.............................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TGAAAATGCGTTGCAGCGCG...................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.......TTTTGTTATGCAGCCTTGCTG....................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................ATTTATTTGCGTTGGCGG..................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.......................TGCTGCGACAAAGGCGAGCC.....................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
...............................................................AATAATAATATTT-----------------------------GGC------AACAA.........................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
......................TTGCTGCGACAAAGGCGAGC......................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
......................TTGCTGCGACAAAGGCGAGCC.....................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.......................................................................TATTT-----------------------------GGC------AACAACAAGC----GGC.............................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
.........TTGTTATGCAGCCTTGCTTT...................................................................................................................................................................................................................................................................................................2040.251000000000000000000000000000010000000000000000000000000000000000
droMoj3
TTGACGATTTTATCATGCAGCCTTGCTGTGACAAATACGAGTCCTTTTAGGTGAGTTATTAC---CCACAATGTTTGTGAAATTAAACAAAGATAAACAAAATTAG-----------------------------------TCCATG----CTC----CT---------------------------------------------------------------------GCTACGCAAGATTTGCGTAAACGTAAGCAAAAATAGAAACAGTT-----------------ATAGTAAAAGGGAAAA-----CTGCGAATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........TATCATGCAGCCTTGCTGTGACA...............................................................................................................................................................................................................................................................................................2311.001100000
droGri2
TTTACGATTTTATTATGCAGCATTGTTGTGACAAAAACGAGTCCATTCAGGTGAGTCTCTGC-----------TTTTTGAATTTAGGCAT-----------TTTAGGCGAACAAAACGACGGGCAGCAGGCAGGGAAATTTCCAGCG----CTT----TTGTTTGCGTTGGCGGTGCCAATGAAAAAAATAGAAACAAAAACAAAAACAAATGCAAAAAAGAAAACATTG---GCCAAAATTGGCATATATCTTAGCAAAAACTAAAAAAGTT--------AAGACAGTTGGAGC-------AAAACAGCAACCACAATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/16/2015 at 10:07 PM