ID:

dvi_208

 Coordinate:

scaffold_12736:322052-322126 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.7 -20.7 -20.4 -20.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTTTATGTACGAAAATTTTTTTGAATGTTTACTTGCTCTATCTTGTGCACCGTTTTCGTTTCGCTCTACGCTTTCGTAACTTGCATACGCATTTAATAATTATGTCGTGCTGTACGAAACCGTGCACGTTCAAGCAGGCTGACGATATTGCACTGCCGCAATTTGTTAATTACT
***************************************..((...(((........(((...((...(((..((((((....((((..((((.........)))).))))..))))))..)))))))).....)))))************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR060686
Argx9_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060673
9_ovaries_total
 SRR060685
9xArg_0-2h_embryos_total
 SRR060677
Argx9_ovaries_total
 SRR060662
9x160_0-2h_embryos_total
 SRR060656
9x160_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 SRR060688
160_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060658
140_ovaries_total
 SRR060655
9x160_testes_total
 SRR060687
9_0-2h_embryos_total
 SRR060683
160_testes_total
 M061
embryo
 SRR060661
160x9_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060670
9_testes_total
 SRR1106719
embryo_8-10h
 SRR060689
160x9_testes_total
 GSM1528803
follicle cells		 SRR060665
9_females_carcasses_total
 SRR060678
9x140_testes_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060657
140_testes_total
 SRR060679
140x9_testes_total
 M047
female body
....................................................................................................TTATGTCGTGCTGTACGAAACCGTGC................................................. 26 0 1 61.00 61 9 5 5 3 8 8 3 1 3 4 3 3 2 0 0 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTACGAAACCGT................................................... 24 0 1 28.00 28 4 4 2 5 0 0 3 4 0 1 1 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTACGAAACCGTG.................................................. 25 0 1 9.00 9 1 2 1 2 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTACGAAACC..................................................... 22 0 1 6.00 6 1 1 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................TTTTTTGAATGTTTACTTGCTCTATCT................................................................................................................................... 27 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTCCGCAACCGT................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TGAATGGTTACTTGCTCTC...................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATCTCGTGCTGTACGAAACCGT................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTACGAACCC..................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTACGAAACCG.................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGATGTACGAAACCGT................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGACGATATTGCACTGCCGCAATTTGT........ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTCCGAAACCGTGC................................................. 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGAACGAAACCGTG.................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GTATGTCGTGCTGTACGAAACC..................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................TTTCGTTTCGCTCTACGCTTTCGTAACT............................................................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................GTTTCGCTCTACGCTTTCGTAACTT............................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTACCAAACCGT................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTACGAAAACGTG.................................................. 25 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................TGATGTACGAAACCGTGCACGTTCAAGC....................................... 28 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGCACGAAACCGTG.................................................. 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTACGAGACC..................................................... 22 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTATACGAAACCGT................................................... 24 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTACGAAACCGTGA................................................. 26 1 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGGCGTGCTTTACGAAACCGT................................................... 24 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TACTTGCTCTATCTTGTGCACCGT......................................................................................................................... 24 0 20 0.25 5 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0
....................................................................................................TTATGTCGTGCTGTACGAAGCC..................................................... 22 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................ATTTGAATGGTTACTTGCT......................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................CTCTATCTTGTGCACCGTTTTCGTT.................................................................................................................. 25 0 20 0.20 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0
..............................TACTTGCTCTATCTTGTGCACCGTTT....................................................................................................................... 26 0 20 0.15 3 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGCTCTATCTTGTGCACCGT......................................................................................................................... 21 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0
......................................................................................................................AACCGTGCACGTTCAAGCAGGCTGACGAT............................ 29 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0
...................................ACTCTATCTTGTGCACCGTTTTCGT................................................................................................................... 25 1 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTACGAAACCGTGTTT............................................... 28 3 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTATGTCGTGCTGTACGAAACCAT................................................... 24 1 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................TACTTGCTCTATCTTGTGCACCG.......................................................................................................................... 23 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................TACTTGCTCTATCTTGTGCACCGTT........................................................................................................................ 25 0 20 0.10 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................TTACTTGCTCTATCTTGTGCACCGT......................................................................................................................... 25 0 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................TTGCTCTATCTTGTGCACCGTTTTCGTT.................................................................................................................. 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................CTCTATCTTGTGCACCGTTTTCGT................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................GTGTGCACCGTTTTCGTTT................................................................................................................. 19 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................GTGCACGTTCAAGCAGGCTGA................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TGCATACGCATTTTCTAATTATGTCGT.................................................................. 27 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................ACCGTGCACGTTCAAGCAGGCTGACG.............................. 26 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCTATCTTGTGCACCGTTTTCGTTT................................................................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................ATCTTGTGCACCGTTTTCG.................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTGCTCTATCTTGTGCACCGTTTTCGT................................................................................................................... 27 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TCTATCTTGTGCACCGTTTTC..................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................TGCTCTATCTTGTGCACCG.......................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TGCATACGCATTTAATAATTATGTCGT.................................................................. 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TTACTTGCTCTATCTTGTGCACCG.......................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................ACTTGCTCTATCTTGTGCACCGTTT....................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................TCTATCTTGTGCACCGTTTTCG.................................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................TATCTTGTGCACCGTTTTC..................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................TGCTCTATCTTGTGCACCGTTTTCG.................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGCTCTATCTTGTGCACCGTT........................................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TATCTTGTGCACCGTTTTCG.................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................CTTGTGCACCGTTTTCGTTTCG............................................................................................................... 22 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................TGCATACGCATTTAATAATTATGTCG................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACTTGCATACGCATTTAATAATTATG...................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AAAAATACATGCTTTTAAAAAAACTTACAAATGAACGAGATAGAACACGTGGCAAAAGCAAAGCGAGATGCGAAAGCATTGAACGTATGCGTAAATTATTAATACAGCACGACATGCTTTGGCACGTGCAAGTTCGTCCGACTGCTATAACGTGACGGCGTTAAACAATTAATGA
************************************..((...(((........(((...((...(((..((((((....((((..((((.........)))).))))..))))))..)))))))).....)))))*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060685
9xArg_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 SRR060674
9x140_ovaries_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060676
9xArg_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060688
160_ovaries_total
 M047
female body
 SRR060654
160x9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060675
140x9_ovaries_total
 SRR060673
9_ovaries_total
 SRR060663
160_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060662
9x160_0-2h_embryos_total
 M061
embryo
 SRR060656
9x160_ovaries_total
 SRR1106713
embryo_0-2h
 SRR060661
160x9_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 SRR060658
140_ovaries_total
 GSM1528803
follicle cells		 SRR060660
Argentina_ovaries_total
 SRR1106712
embryo_0-2h
 SRR1106715
embryo_4-6h
 SRR1106717
embryo_6-8h
 SRR1106718
embryo_6-8h
 SRR1106719
embryo_8-10h
 SRR1106721
embryo_10-12h
 SRR1106722
embryo_10-12h
 SRR1106724
embryo_12-14h
 SRR1106726
embryo_14-16h
 SRR1106730
embryo_16-30h
 V047
embryo
 SRR060655
9x160_testes_total
 SRR060681
Argx9_testes_total
...................................................................................CGTATGCGTAAATTATTAATACAGCAC................................................................. 27 0 20 11.45 229 132 0 0 41 47 0 0 2 2 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGTGCAAGTTCGTCCGACTGCTAT........................... 24 0 1 8.00 8 0 3 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................AGATAGAACACGTGGCAAAAGCAAAGC............................................................................................................... 27 0 11 3.64 40 1 8 1 6 3 7 5 0 3 0 1 2 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GATAGAACACGTGGCAAAAGCAAAGC............................................................................................................... 26 0 11 1.36 15 2 1 2 1 0 1 2 2 0 0 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GAGATAGAACACGTGGCAAAAGCAAAGC............................................................................................................... 28 0 11 1.27 14 0 1 0 0 0 3 0 1 5 2 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTATGCGTAAAAGATTAATACAGCAC................................................................. 27 2 20 1.10 22 0 20 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GGCACGTGCAAGTTCGTCCGACTGCTAT........................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTGCAAGTTCGTCCGACTGCTAT........................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTGCAAGTTCGTCCGGCTGCTAT........................... 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TGAACGAGATAGAACACGTGGCAAAA...................................................................................................................... 26 0 20 0.90 18 0 0 0 0 0 0 0 0 0 0 0 0 1 12 0 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGAGATAGAACACGTGGCAAAAGCAAAGC............................................................................................................... 29 0 11 0.82 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 1 0 1 1 1 1 1 1 0 0 0 0
.......................................ATAGAACACGTGGCAAAAGCAAAGC............................................................................................................... 25 0 11 0.82 9 0 1 1 0 0 2 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTATGCGTAAATTATTAATACAGCAA................................................................. 27 1 20 0.65 13 0 0 0 0 0 10 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................TAGAACACGTGGCAAAAGCAAAGC............................................................................................................... 24 0 11 0.64 7 1 0 1 0 0 0 0 0 0 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ATTTCGTGACGGCGTTAAACAATT..... 24 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGCGCAAGTTCGTCCGACTGCTAT........................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TGAACGAGATAGAACACGTGGCAAAAGCAAAGC............................................................................................................... 33 0 11 0.45 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0
.........................................AGAACACGTGGCAAAAGCAAAGC............................................................................................................... 23 0 12 0.42 5 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GGCACGTGCAAGTTCGTCCGACTGCT............................. 26 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TTCCGTGACGGCGTTAAACA........ 20 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TAAATTATTAATACAGCAC................................................................. 19 0 20 0.25 5 0 0 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GAACGTGCAAGTTCGTCCGACTGCTAT........................... 27 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGTGCAAGTTCGTCCGACTGCT............................. 22 0 20 0.25 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................GAACGAGATAGAACACGTGGCAAAAG..................................................................................................................... 26 0 20 0.20 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GAGATAGAACACGTGGCAAAAGCAAAG................................................................................................................ 27 0 11 0.18 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGAGATAGAACACGTGGCAAAAGCAAAG................................................................................................................ 28 0 11 0.18 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCACGTGCAAGTTCGTCCGACTGCTA............................ 26 0 20 0.15 3 0 0 0 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GCACGTGCAAGTTCGTCCGACTGCT............................. 25 0 20 0.15 3 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TATGCGTAAAAGATTAATACAGCAC................................................................. 25 2 20 0.15 3 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GAACGAGATAGAACACGTGGCAAAAGC.................................................................................................................... 27 0 20 0.15 3 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ATGCGTAAAAGATTAATACAGCAC................................................................. 24 2 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AACGTATGCGTAAATTATTAATACAGCAC................................................................. 29 0 20 0.10 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CGTAAATTATTAATACAGCAC................................................................. 21 0 20 0.10 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TGGCAAAAGCAAAGC............................................................................................................... 15 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................ATGCGTAAATTATTAATACAGCAC................................................................. 24 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................AATGAACGAGATAGAACACGTGGCAAAA...................................................................................................................... 28 0 20 0.10 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GTATGCGTAAATTATTAATACAGCAC................................................................. 26 0 20 0.10 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GAACGTATGCGTAAATTATTAATACAGCA.................................................................. 29 0 20 0.10 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGGCACGTGCAAGTTCGTCCGACTGCT............................. 27 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GAGATAGAACACGTGGCAAAAGCA................................................................................................................... 24 0 20 0.10 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GTATGCGTAAATTATTAATACAGCAA................................................................. 26 1 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GAACGAGATAGAACACGTGGCAAAA...................................................................................................................... 25 0 20 0.10 2 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GATAGAACACGTGGCAAAAGCAAAG................................................................................................................ 25 0 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................AGATAGAACACGTGGCAAAAGCAAAG................................................................................................................ 26 0 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGAGATAGAACACCTGGCAAAAGCAAAGC............................................................................................................... 29 1 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................AAATAGAACACGTGCCAAAACCAAAGC............................................................................................................... 27 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................GATAGAACACGTGGCAAAAGCAAAGT............................................................................................................... 26 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................AGATAGAACACGTGGCAAAAGCAAAGT............................................................................................................... 27 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTATGCGTAAAAGATTAATATAGCAC................................................................. 27 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ATGAACGAGATAGAACACGGGGCAAAAGC.................................................................................................................... 29 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TGAACGAGATAGAACACGTGGCAAAAGC.................................................................................................................... 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTATGCGTAAATTGTTAATACAGTAC................................................................. 27 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................ATAGAGAACACGTGGCAAAAGCAA.................................................................................................................. 24 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTATGCGTAAAAGATTAATACAGCAT................................................................. 27 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTGGCACGTGCAAGTTCGT...................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GTATGCGTAAATTGTTAATACAGCAC................................................................. 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTATGCGTAAAATATTAATACAGCAC................................................................. 27 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AACGAGATAGAACACGTGGC.......................................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TGGGTAAATTATTAATACAGCAC................................................................. 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTATGCGTAAATTATTAATGCAGCAC................................................................. 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGAGATAGAACAAGTGGCAAAAGCAAA................................................................................................................. 27 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TGAACGAGATAGAACACGTGGCAAA....................................................................................................................... 25 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CATGCGTAAATTATTAATACAGCAC................................................................. 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTATGCGTAAATTATTAATACAGCA.................................................................. 26 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................AACGAGATAGAACACGTGGCAAAAGCA................................................................................................................... 27 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................GTGACGGCGTTAAACAAT...... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TGCGTAAATTATTAATACAGC................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TATGCGTAAATTGTTAATACAGCAC................................................................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ATGAACGGGATAGAACACGTG............................................................................................................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTATGCGTAACTTATTAATACAGCAC................................................................. 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTGGCACGTGCAAGTTCGTCCGA.................................. 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTACGCGTAAATTATTAATACAGCAC................................................................. 27 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGAACGTATGCGTAAATTATTAAT........................................................................ 24 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................GCGTAAATTATTAATACAGCAC................................................................. 22 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTGGCACGTGCAAGTTCGTCCGACT................................ 25 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TGAACGAGATAGAACACGTGGCGAAAG..................................................................................................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................ACGAGATAGAACACGTGGCAAAAGCA................................................................................................................... 26 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TATGCGTAAATTATTAATACAGCAC................................................................. 25 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GAACGAGATAGAACACGTGGCAGAAG..................................................................................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TGCGTAAATTGTTAATACAGCAC................................................................. 23 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................GTATGCGTAAAAGATTAATACAGCAC................................................................. 26 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................CGTGCAAGTTCGTCCGACTGC.............................. 21 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGCAAGTTCGTCCGACTGCTA............................ 21 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................ACGTGGCAAAAGCAAAGC............................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTAGGCGTAAATTATTAATACAGCAC................................................................. 27 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................ACGAGATAGAACACGTGGCAAAAGCAA.................................................................................................................. 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................ACGTATGCGTAAATTATTAATACAGCAC................................................................. 28 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTATTCGTAAATTATTAATACAGCAC................................................................. 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GAACGAGATAGAACACGTGGCAAA....................................................................................................................... 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TGCAAGTTCGTCCGACTG............................... 18 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................AAGAACGAGATAGAACACGTGGCAAAA...................................................................................................................... 27 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................CGAGATAGAACACGTGGCAAAAGC.................................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................AGATAGAACACGTGGCAAAAGCAAA................................................................................................................. 25 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CACGTGCAAGTTCGTCCGACTGCT............................. 24 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ATGAACGAGATAGAACACGTGGCAAAA...................................................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CGTATGCGTAAATTATTAATACCGCAC................................................................. 27 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TTTGAACACGTGGCAAAAGCAAAGC............................................................................................................... 25 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................AGTATGCGTAAAAGATTAATACAGCAC................................................................. 27 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_12736:322002-322176 + dvi_208 TTTTTATGTACGAAAAT-------TTTTTTGA-ATGTTTACTTGCTCTATCTTGTGCACCGTTTTCGTTTCGCT-CTACGCTT-TCGTAACTTGCATACGCATTTAAT---AATTATGTCGTGCTGTACGAAACCGTGCACGTTCAAGCAGGCTGACGATATTGCACTGCCGCAATTTGTTAATTACT
droMoj3 scaffold_6680:24738663-24738841 + TCTTTCGTTCTGCTCTTTAACAGCTATTTTTG-TTGTTGTTTT--------ATCCTCTTTGTTGTTATTTAGCTTCTTCAGTTTCGGTAATTTCTATTTGATCCCAATTGCCAATATGAGTTGCTGTAAAAAATCTTGCTCGTTCAGACAGGCAGTGGACTCTGCACAACCGCAATTTGTACATTGCT
droGri2 scaffold_15203:9361779-9361836 - A----------------------------------------------------------------------------------------------------------------------------------AAACTTGCACACTTAAGCTAGCCGAAGATGCTTTACAGCCACAAGTTGTTAATTGTT
droWil2 scf2_1100000004519:11935-11984 - TTTATATATTTATATAT-------TTTTTTGTGATACATTTTT-----------------------------------------------------------------------------------------------------------------------------------ATTTACTTTTTATT
droPer2 scaffold_243:30302-30359 - TTTTTGGACATGCAAAA-------TTTTTTTA-TTATTTTTTTTTTTATTCTTGTGTCCCGCTT--------------------------------------------------------------------------------------------------------------------------TC
droEle1 scf7180000486627:4031-4085 + ACCCG---------------------------------------CTCCCTCTTCCCCATCTTTCTCATCTCGCT-CTCCAGTT-GA--------------------------------------------------------------------------------------------GTGACTCGCA
droTak1 scf7180000415105:3583-3594 + TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAATTGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TTTTTATGTACGAAAAT-------TTTTTTGA-ATGTTTACTTGCTCTATCTTGTGCACCGTTTTCGTTTCGCT-CTACGCTT-TCGTAACTTGCATACGCATTTAAT---AATTATGTCGTGCTGTACGAAACCGTGCACGTTCAAGCAGGCTGACGATATTGCACTGCCGCAATTTGTTAATTACTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................TTATGTCGTGCTGTACGAAACCGTGC.................................................26161.0061000050300031800000000005123800003103924000000000000000000000000
.................................................................................................................TTATGTCGTGCTGTACGAAACCGT...................................................24128.0028000042301000000000000002410000001005401000000000000000000000000
.................................................................................................................TTATGTCGTGCTGTACGAAACCGTG..................................................2519.009000020000000000000000001100100000002101000000000000000000000000
.................................................................................................................TTATGTCGTGCTGTACGAAACC.....................................................2216.006000010000010000000001001000000000001100000000000000000000000000
........................TTTTTTGA-ATGTTTACTTGCTCTATCT........................................................................................................................................2712.002000000000000000000000000002000000000000000000000000000000000000
.................................................................................................................TTATGTCGTGCTGTACGAAACCG....................................................2311.001000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................TGACGATATTGCACTGCCGCAATTTGT........2711.001000000100000000000000000000000000000000000000000000000000000000
..............................................................TTTCGTTTCGCT-CTACGCTT-TCGTAACT................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
..................................................................GTTTCGCT-CTACGCTT-TCGTAACTT...............................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................TTATGTCGTGCTGTACGAAACCGTGA.................................................2630.331000000000000000000000000000000000001000000000000000000000000000
......................................TACTTGCTCTATCTTGTGCACCGT..............................................................................................................................24200.255000000012000000000000000000001000010000000000000000000000000000
............................................CTCTATCTTGTGCACCGTTTTCGTT.......................................................................................................................25200.204000000000000000000000000000000000000000000000000000000000000004
......................................TACTTGCTCTATCTTGTGCACCGTTT............................................................................................................................26200.153000000000000000000000001002000000000000000000000000000000000000
.........................................TTGCTCTATCTTGTGCACCGT..............................................................................................................................21200.153000000021000000000000000000000000000000000000000000000000000000
...................................................................................................................................AACCGTGCACGTTCAAGCAGGCTGACGAT............................29200.153000000000000000000000000000000000000000000000000000000000000003
.................................................................................................................TTATGTCGTGCTGTACGAAACCGTGTTT...............................................2870.141000000000000000000000000001000000000000000000000000000000000000
......................................TACTTGCTCTATCTTGTGCACCG...............................................................................................................................23200.102000000000000000000000000000000001010000000000000000000000000000
......................................TACTTGCTCTATCTTGTGCACCGTT.............................................................................................................................25200.102000000000000000000000000100001000000000000000000000000000000000
.....................................TTACTTGCTCTATCTTGTGCACCGT..............................................................................................................................25200.102000000000000000000000000000010000000100000000000000000000000000
.........................................TTGCTCTATCTTGTGCACCGTTTTCGTT.......................................................................................................................28200.051000000000000000000000000000000001000000000000000000000000000000
............................................CTCTATCTTGTGCACCGTTTTCGT........................................................................................................................24200.051000000000000000000000000000000000000000000000000000000000000001
.......................................................................................................................................GTGCACGTTCAAGCAGGCTGA................................21200.051000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................................ACCGTGCACGTTCAAGCAGGCTGACG..............................26200.051000000000000000000000000000000000001000000000000000000000000000
.............................................TCTATCTTGTGCACCGTTTTCGTTT......................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
................................................ATCTTGTGCACCGTTTTCG.........................................................................................................................19200.051000000000000000000000000100000000000000000000000000000000000000
.........................................TTGCTCTATCTTGTGCACCGTTTTCGT........................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
.............................................TCTATCTTGTGCACCGTTTTC..........................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
..........................................TGCTCTATCTTGTGCACCG...............................................................................................................................19200.051000000000000000000000000100000000000000000000000000000000000000
............................................................................................TGCATACGCATTTAAT---AATTATGTCGT..................................................................27200.051000000000000000000000000000000000001000000000000000000000000000
.....................................TTACTTGCTCTATCTTGTGCACCG...............................................................................................................................24200.051000000000000000000000000000000000001000000000000000000000000000
.......................................ACTTGCTCTATCTTGTGCACCGTTT............................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
.............................................TCTATCTTGTGCACCGTTTTCG.........................................................................................................................22200.051000000000000000000000000000000000000000100000000000000000000000
...............................................TATCTTGTGCACCGTTTTC..........................................................................................................................19200.051000000000000000000000000000010000000000000000000000000000000000
..........................................TGCTCTATCTTGTGCACCGTTTTCG.........................................................................................................................25200.051000000000000000000000000000000000000100000000000000000000000000
..........................................TGCTCTATCTTGTGCACCGTT.............................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
...............................................TATCTTGTGCACCGTTTTCG.........................................................................................................................20200.051000000000000000000000000000000000000000100000000000000000000000
..................................................CTTGTGCACCGTTTTCGTTTCG....................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
............................................................................................TGCATACGCATTTAAT---AATTATGTCG...................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................ACTTGCATACGCATTTAAT---AATTATG......................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCTTTCGTTCTGCTCTTTAACAGCTATTTTTG-TTGTTGTTTT--------ATCCTCTTTGTTGTTATTTAGCTTCTTCAGTTTCGGTAATTTCTATTTGATCCCAATTGCCAATATGAGTTGCTGTAAAAAATCTTGCTCGTTCAGACAGGCAGTGGACTCTGCACAACCGCAATTTGTACATTGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................TCTGCACAACCGCAATTTGTACATTGC.2740.251100000
............................................................................................................................TGTAAAAAATCTTGCTCGTTCAGACA......................................2650.201100000
................................................................................................................AATATGAGTTGCTGTAAAAAATCTTGC.................................................2750.201100000
.....................................................................................................................................TCTTGCTCGTTCAGACAGGCAGTGGAC............................2750.201100000
.....................................................................................................TCCCAATTGCCAATATGAGTTGCTGT.............................................................2670.141000010
...........................................................................................................................................TCGTTCAGACAGGCAGTGGACTCTGC.......................2670.141100000
..................................................................................................TGATCCCAATTGCCAATATGAGTTG.................................................................2590.111100000
..................................................................................................................TATGAGTTGCTGTAAAAAATCTTGGAA...............................................27110.091100000
.....................................................................................................TCCCAATTGCCAATATGAGTTGCTG..............................................................25200.051100000
.....................................................................................................TCCCAATTGCCAATATGAGTTGC................................................................23200.051100000
......................................................................................................CCCAATTGCCAATATGAGTTGCTG..............................................................24200.051100000
droGri2
A----------------------------------------------------------------------------------------------------------------------------------AAACTTGCACACTTAAGCTAGCCGAAGATGCTTTACAGCCACAAGTTGTTAATTGTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TTTATATATTTATATAT-------TTTTTTGTGATACATTTTT-----------------------------------------------------------------------------------------------------------------------------------ATTTACTTTTTATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........TTATATAT-------TTTTTTGTGATA........................................................................................................................................................20200.05100010
............................TTGTGATACATTTTT-----------------------------------------------------------------------------------------------------------------------------------ATTTACT.......22200.05101000
...............AT-------TTTTTTGTGATACATTTTT-----------------------------------------------------------------------------------------------------------------------------------AT............23200.05100010
droPer2
TTTTTGGACATGCAAAA-------TTTTTTTA-TTATTTTTTTTTTTATTCTTGTGTCCCGCTT--------------------------------------------------------------------------------------------------------------------------TCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droEle1
ACCCG---------------------------------------CTCCCTCTTCCCCATCTTTCTCATCTCGCT-CTCCAGTT-GA--------------------------------------------------------------------------------------------GTGACTCGCASizeHit CountTotal NormTotal
No Reads
droTak1
TT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTAATTGCTSizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 03:47 PM