ID:

dvi_20743

 Coordinate:

scaffold_13049:20297331-20297557 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.2 -15.1 -15.1

Flybase annnotation

exon [dvir_GLEANR_11487:2]; exon [dvir_GLEANR_11487:1]; CDS [Dvir\GJ11449-cds]; CDS [Dvir\GJ11449-cds]; intron [Dvir\GJ11449-in]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTGCCCCATCGGCTATGCCTACAACGAGCTGGGCGGCACGTGCAGCGGACGCATCCAAGATGTGGCCGCGTGCCGTCAGCCGTGAGCTGAGGCGAACATTTACCAATTAAGCTTTTCGTTGTCTTTGCTACGTTTTTTTTTTATGTTGTGCTGTGCAATTAACACAATTAATAAATATGAACTAATCGCCTTATCGAACTGCGAACTGTGTGCGCCTCTAAACGCCTATAAAGCAGCCGACTCCGGCTGCGGATCTCAACAGTATTGATGTTGAAAGTTCTAACAATTGTCATTGGCTGCCTGCTGGCCTTGCTGGGCTCCGGATCG
******************************************************************((((.((...(((((((.(((.(((((.(((....................)))))))).))))))............)))).))))))..************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 SRR060667
160_females_carcasses_total
 M027
male body		 M047
female body
 SRR060669
160x9_females_carcasses_total
 V047
embryo
 M028
head
 M061
embryo
 SRR060666
160_males_carcasses_total
 SRR060671
9x160_males_carcasses_total
 GSM1528803
follicle cells		 SRR060687
9_0-2h_embryos_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
......................................................................................................................................TTTTTTTTATGTTGTGCTGTGCA.......................................................................................................................................................................... 23 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................CGTGCAGCGGACGCATCCAAGAT.......................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................ACGTGCAGCGGACGCATCCA.............................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................GTTTTTTTTTTATGTTGTGCTGT............................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTATGTTGTGCTGTGCAATTAAC.................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGCGTGCCGTCAGCCGTGAGCT............................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................GAGCTGGGCGGCACGTGCAGC......................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CTTTGCTACGTTTTTTTTTT......................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................GCCTACAACGAGCTGGGCGGCA................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................CGCGTGCCGTCAGCCGTGAGCTGAGGC.......................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................ATCCAAGATGTGGCCGCGTGCCGT........................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TTCGTTGTCTTTGCTACGTTTTTTTT........................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................GAACATTTACCAATTAAGCTTTTCGTT............................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TTTTTTTATGTTGTGCTGTGCAATT....................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................ATTTACCAATTAAGCTTTTC.................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................ACAACGAGCTGGGCGGCA................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................CCAAGATGTGGCCGCGTGCCGTC.......................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............CTATGCCTACAACGAGCTGGGCGGC.................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................CGTCAGCCGTGAGCTGAGGCGA........................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CTACAACGAGCTGGGCGGCACGTGC............................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AATTAAGCTTTTCGTTGTCTTTGCTAC.................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TTTACCAATTAAGCTTTTCGTT............................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................CTACAACGAGCTGGGCGGCAC................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CGTGCAGCGGACGCATCCAA............................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GCTATGCCTACAACGAGCTGGGCGGC.................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................AAGATGTGACGGCGTGCC............................................................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................ATTAAGCTTTTCGTT............................................................................................................................................................................................................... 15 0 3 0.33 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................CCATGCTGGGTTCCGGAAC. 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AATACAATTAATAATTATGAAGT................................................................................................................................................ 23 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................ACGTTCTGGGCCGCACGTG............................................................................................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................................GGCATTGGGTGCTTGCTGGC................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
................................GCGGGTCGGGCAGCGGACGC................................................................................................................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................ACGTTCTGGGCGGCACGCG............................................................................................................................................................................................................................................................................................. 19 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CACGGGGTAGCCGATACGGATGTTGCTCGACCCGCCGTGCACGTCGCCTGCGTAGGTTCTACACCGGCGCACGGCAGTCGGCACTCGACTCCGCTTGTAAATGGTTAATTCGAAAAGCAACAGAAACGATGCAAAAAAAAAATACAACACGACACGTTAATTGTGTTAATTATTTATACTTGATTAGCGGAATAGCTTGACGCTTGACACACGCGGAGATTTGCGGATATTTCGTCGGCTGAGGCCGACGCCTAGAGTTGTCATAACTACAACTTTCAAGATTGTTAACAGTAACCGACGGACGACCGGAACGACCCGAGGCCTAGC
**************************************************************************************************************************************************************************((((.((...(((((((.(((.(((((.(((....................)))))))).))))))............)))).))))))..****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060666
160_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 SRR060663
160_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR1106727
larvae
 V047
embryo
 SRR060687
9_0-2h_embryos_total
 V053
head
 M027
male body		 SRR060671
9x160_males_carcasses_total
 SRR060676
9xArg_ovaries_total
 M047
female body
..........................................GTCGCCTTCGTAGCTTCTA.......................................................................................................................................................................................................................................................................... 19 2 3 1.33 4 2 0 1 0 1 0 0 0 0 0 0 0 0
..........................................GTCGCCTCCGTAGCTTCTA.......................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................CCTAGGGTTGTCATA.............................................................. 15 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................TCGCCTCCGTAGCTTCTAC......................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................TCGCCTTCGTAGCTTCTAC......................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................ACGTCGCCTGCGTCAGTTC............................................................................................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................TCGCCTTCGTAGCTTCTACC........................................................................................................................................................................................................................................................................ 20 3 9 0.22 2 0 0 1 0 0 0 0 0 0 0 1 0 0
..........................................GTCGCCTTCGTAGCTTCTACC........................................................................................................................................................................................................................................................................ 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AGCGGCGCGCGGTAGTCGGC..................................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................GGTCGCCTCCGTAGCTTCTA.......................................................................................................................................................................................................................................................................... 20 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................CAGTAACCGACAGGCTACCG................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......................TTGCTCGACCCTTCGTCCAC............................................................................................................................................................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................GGAACGCCCCAAGGCCGAG. 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................GCAACAACTTTCAAAATTGTT......................................... 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................GTTGTAATCACTACAGCTT.................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...GGGGTAAGCGATGCGGATG................................................................................................................................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..CGGGGTAGTCGATACGGCGG................................................................................................................................................................................................................................................................................................................. 20 3 18 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................CGGCGCGCGGCAGTCTGCC.................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:20297281-20297607 - dvi_20743 GTGCCCCATCGGCTATGCCTACAACGAGCTGGGCGGCACGTGCAGCGGACGCATCCAAG---ATGTGGCCGCGTGCCGTCAGCCGTGAGCT-----GAGGCGAACA------------------------------------------------------TTTACCAATTAAGCTTTT--CGTTGTCTTTG--CTA-------------------CGTTTTTT-TTT----------TATGTTGTGCTGTGCAATTAACACAATTAATA-AATATGAACTAA--------------------------TCGCCTTATCGAACTGC--GAACTGTG------TGCGCCTC-TAA-ACGCCTATAAAGCA-GCCGACTCC-GG--------CTGCGGA-TCT-------------------CAACAGTAT--------TGATGTTGAAAGTTCTAACAATTGTCATTGGCTGCCTGCTG-GCCTTGCTGGGCTC---CGGA--TCG
droMoj3 scaffold_6680:8008604-8008925 - GTGTCCCATTGGCTATGCCTACAGCGAGCAGCTCGGCACGTGCAGCGGACGCATCGCGG---A-TC----------AGCT----------------GCCGCGAAC------------------------------------------------------ATGTTTCAATTAAGACTCT--CA-CTTGTCAC--CTGTGGCAATTTCTCGATGCTTCTGTTGTTCTTTTAATTGGCAATTATG-----ACAGCAATTAATACAAAATAAA-ACTGTGAGCTAA--------------------------TCACCTTATCTAAG--------------------GCACTGGGGCT-ACTACTATAAAGCA-GACGGT----GCCAGCTCGGCTGTTAG-CCAG------TTG--CGAAACGCAATTCGTT--------TTATGTTGCAGCTTCTT---TTGGCATTGAGCTGCCTGTGG-CC-C----TTGGAG---------TGG
droGri2 scaffold_15110:16605303-16605595 + GTGTCCCATTGGTTATGCGTTCAATGAGCCAAATGGCACCTGCAGTGGACGCATCGCTG---ACAT----------ACCGGATTGTAGGCA-----ATAAA------------------------------A---AA--------------GA-ACATATTTTTTTAATTAAGAACTA--TGTTGTGTTAA--ACT-------------------------------------GTA-TTGTA--------------ACAAATA--AAAA-AATATGAGCTAA--------------------------CTGCCTTATCGTAGTACATGAGCCGAA-----------------T-GCGCCTATAAAGCA-CACGTCTTTTGG--TGTCTTCGCCA---ACAGTTATCGTCG--AGGC---CAAGTAATT--------TTATGTTGAAACTGCTA---ATTGTAATTGGC----TGCTG-TC-T----GCCGC----------TCA
droWil2 scf2_1100000004949:1852076-1852373 - GTGTCCCTTCTGCTACTTATTCAATACGGACAATGGCAGCTGTACAGGCCTAATGGCAA---A-------------------TTG--------------------------------------------------------------------------TTCGTTTAATTAATTTTCA--TGTTGTATCAA--ATC-------------------------------------TTT-CAGACAGTACG--------AT-ACAATACAAT-AAATTGATTTTAAAATGAAGTATTAAAGTAGCGTG--TGCATCTTATCAAATTGT--TAGATT--------------TTCGCT-TCACTTATAAAGCG-AGTGTTATTGGG--A--AATCGACGCA-ACAGTTCT--TCG--AATT-------TCTGT--------GGATGTGGAAAGTTTTG---TTACCGCTTCTTTGCCTAATGGCA-T----GGCCGG------CAGGAT
dp5 XR_group6:230580-230899 + GTGTCCCATTGGATATGCATTCAACGCTACGACTGGAGCTTGTGGCGGACGTACACGGA---GCTC----------CATGGACTGTACTGTACGCTGAAGTAGTGA------------G-AGCTAA----AGT--AG--------------A--GAAAACATTTTTAATTA-GCCCCG--TGTCTTGTCAA--ATA-------------------------------------AAA-TCAAT--------------TTAGCTAGCAAAT-AAATTGAGCTTAT--------------------AGCCAGAGCCTTATCTCATTGA-CGAGCGAAC------CGAAGCGAACTC-CCACCTATAAAGGA-GGCCCT----GA--CCTGGAAGATGGGAACAG------TTG--AAAGC------CTA-----------TATGTGGAAGTTGTTG---TTACTCTTTGGCTGCCTGCTG-CC-T----GGCCAT---------CAG
droPer2 scaffold_12:916387-916439 + GTGTCCCATTGGATATGCATTCAATGCTACGACTGGAGCTTGCGGCGGACGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13337:6468998-6469311 - GTGTCCCATAGGATATGCCTTCAATGGCGATACCGGAGCATGTGGGGGACGCCTTCAAA---ATTT----------CGTTGACTGTACGCT-----AAAGTGAAAA--CAATATATA-TT--------------AAC--------------T--GAAATCACTTTTAATTAAGCCTCTATTGTCATGTCAA--ATT-------------------------------------AATTTCATT--------------AAAGCTAGAAAAT-AAACTGAATTTA--------------------------GAGTCTTATCAGCGAAC--AAGCACGA------GGAGTCATAGTC-CCACCTATAAAGACTGCCACT----GA--TCCGAGAGAGGAAAACAG------TCG--AAAGC------CTAT---------ATATGTGGCAG---TTG---ATACTTCTGGCCTGCCTGCTG-CC-T----GGCCTC---------CAG
droBip1 scf7180000396709:205147-205460 - GTGTCCTATCGGATATGCCTTCAATGGTGACACCGGAGCATGTGGTGGAAGGCTTCAAA---ATTT----------TGTCGATTGTACGCT-----GAAGTGAAAA--TAATGTATA-TA--------------AAC--------------T--GAAATCACTTTTAATTAAGCCTCTATTGTCGTGTCAA--ATT-------------------------------------AATTTCATT--------------AAAGCTAGAAAAT-AAAAAGAATTTA--------------------------GAGTCTTATCAGCGAAC--AAGCTAGA------CGAGTCATAGTC-CCACCTATAAAGACCGGCCCT----GA--TCCGAAAGATGAAAACAG------TCG--AAAGC------CTAT---------ATATGTGGCAG---TTG---ATACTTCTGGCCTGCCTGCTG-CC-T----GGCCTC---------CAG
droKik1 scf7180000302686:1236710-1237032 + ATGTCCCTTTGGATATGCATTTGACGCCGAAACTGGAGCATGTGGTGGCCTTATACGGA---ACAG----------CGTCAACTGTACAAT-----GAGGTGAAGAGCTA-------AA-AAC-------------AAGAAACAAATGAAAA--AAAAGAACTTTTAATTAAGCCCCTTGTGTCATGTCAA--ATA-------------------------------------AAA-TCATT--------------ATAGCTAGAAAAT-AAACTGAATTAAG--------------------AG--AGAGTCTTATCGCAAAAACCAAGCAAAA------CGAA---------CCACCTATAAAGAA-GGCTCT----GA--TCGGGAAGATGGG-ACAG------TTG--AAAGC------CTA-----------TATGTGGCAGCTATTG---ATTGTGTTCGCCTGCCTGTCA-CC-T----GGCTACCAC------CAG
droFic1 scf7180000454065:1789043-1789354 + ATGTCCTATTGGCTACGCCTTCGATCCCGAAACTGGAGCTTGTGGTGGCCGCATACGCA---GCTC----------AGACGATTGTATTTT-----GAAATAAGAAATTA-------ATA-----AAAAAAGAA-AA--------------A--ACAAACACTTTTAATTAAGCCCCT--TGTCGTGTCAA--ATA-------------------------------------AAA---------------------TAGCTGGAAAAT-CAAACGAATTTT--------------------------GTGTCTTATCGAAGTAC--AAGCAAAG------TGTTGCGTATTTTTTAGCTATAAAGTA-GGTTCT----GA--TCTCTCGGATGAG-ACAG------TTG--AAAGC------TTGTT--------TTATGTGGCGGTTGTTG---ATATTGCTGGCCTGCCTGTTA-CC-T----CATTGT---------CAG
droEle1 scf7180000491000:910459-910776 - ATGTCCTATTGGCTATGTCTTCGATTCGGAGAGTGGAGCTTGTGGTGGTCGTAAACGAG---ATTC----------GGCCGATTGTACGAT-----GAAATAAAAAGTTA-------ATAAGCTAAAAAAACAA-AA--------------GA--AGAAATCATTCAATTAGGCTTCT--TGTCATGTCAA--CTA-------------------------------------------------------------AAGCTAGAAAAT-AAAATTAACCAA--------------------------GAGTCTTATCAGATAAC--AAGCGAAACAGTAATGAACAGTATTT-GCACCTATAAAGAA-GGCTCT----GA--TCCGCGAGATGAG-ACAG------TCGAAACAGT------CTA-----------TATGTGGCAGTTGTTG---ATTGTCTTTGGCTGCCTGTTA-CC-T----GTAAAT---------CAG
droRho1 scf7180000770847:12185-12481 - ATGTCCCATTGGATACGTCTTCGACACCGAAACTGGGGCATGTGGTCGTC---AGCGAG---CTTC----------TGCCGATTGTACGTT-----AAAATAAAAGGCTA------------------------AAC--------------A-----GAACCAATTAATTAAGCCTCT--TGTCGTGTCAA--ATA-------------------------------------AAA-TCATT--------------ATAGCTAGAAAAT-AAAATGAATTTA--------------------------GCGTCTTATCAGAGAAC--AAGCAATC------CGAACAGAATTT-CCACCTATAAAGAA-GGCTCT----GA--TCCGCGAGATGAG-ACAG------TTG--AAAGT------CTA-----------TATGTGGCAGTTGTTG---ATAGTCTTTGGCTGCCTGTTG-CC-T----GGATAT---------CAG
droBia1 scf7180000302334:875889-876201 + GTGTCCCATTGGATATGCCTTCGATTCGCAAACTGGAGCTTGCGGGGGTCGCATAAGAA---ACTC----------CGACGACTGTGCGCT-----GAAGTAGAGGA-AAGCCGACA-AA-----------A---TC--------------AC--ACACCACTTTTAATTAGGCCTCT--TGTCATGTCAA--ATA-------------------------------------AAG-TCGTT--------------ATAGCTAGGAAAT-AAAATGAATTTG--------------------------GAGTCTTATCTGAGAAC--AAGCAAAC------CGAAGCGTATTT-CCACCTATAAAGAA-GGCTCT----GA--TCTGGGCGATGAG-GCAG------TAT---AAGC------CTATT--------AAATGTGGCAATTGTTG---ATATTCCTGGCCTGCCTGCTG-CC-T----GGCCAC---------CAG
droTak1 scf7180000415795:943779-944076 - ATGTCCTATCGGCTATGCCTTCGATTCTCAAACTGGAGCTTGCGGTGGTCGCATAAGAA---ACTC----------CAACGATTGTACGCT-----GAAGTAAAA-----------------------------------------------------------TTAATTAAGCCTCT--TGTCATGTCAAAAATA-------------------------------------AAA-TCATT--------------ATAGCTAGAAAAT-AAAATGAATTTA--------------------------CCGTCTTATCACTGAAC--AAGCTAAA------CGAACCGTATTTCCCACCTATAAAGAA-GGCTCT----GA--TCTGCGCGATGAG-TTAG------TTG--AAAGG------TTATTATTTCCAGATATGTGGCAATTTTTG---ATAGTCTTGGCCTGCCTGTTG-CC-T----GGCCAC---------CAG
droEug1 scf7180000408844:251895-252209 - ATGTCCTATTGGCTATGCCTTCGATTCGGAAACTGGAGCTTGTGGTGGTCTCATAAGAA---ACTC----------CAATGATTGTACTTT-----AAAGTAAAAA--TA---------------------A--AACAGAAAGAACTTAAAGCAGAAATCACTTTTAATTAAGCCTCT--TGTCATGTCAT--ATA-------------------------------------AAA-TCATT-------------AATAGCTAGAAAAT-AAAATGAATTTA--------------------------GAGTCTTATCAATGAAC--AAGCAAAA------TGAA---------CCAGCTATAAAGAA-GCCACT---GGA--TCTGTTCGATGAG-ACAG------TTG--AAAGC------CAATT--------ATATGTGGAAATTGTTG---ATAGTCTTGGCCTGCCTGTTG-CC-T----GGCTAC---------CAG
dm3 chr3L:15520552-15520868 - ATGTCCTATTGGCTACGCATTCGATCCCCAAACTGGAGCTTGTGGTGGACGT--ACGTAATCGCTC----------CAGCGATTGTACTTT-----AAAGTGAAAA--TA---------------------A---TC--------------GC--ACCAAACTTTTAATTAAGCCTCT--TGTCGTGTCAA--ATT-------------------------------------AAA-CAATT--------------ATAGCTAGAAAATAAAAATGAATTTA--------------------------GAGTCTTATCAGAGAAC--AAGCAAAC------CGCACAGCATTT-CCACCTATAAAGAA-GGCACT----GA--TCTCGGCGATGAG-GCAG------TGCAGAAAGC------CTATT--------GAATGTGGCAATTGTTG---ATAGTCTTGGCCTGCCTGTTA-CC-T----GGCTACCTCTGGGTGCAG
droSim2 3l:15154271-15154583 - ATGTCCTATTGGCTTCGCATTCTATCCCCAAACTGGAGCTTGTGGTGGACGCATACGTA---GCTC----------CAGCGATTGTACTTT-----CAAGTGAACA--TA---------------------A---TC--------------GC--ACAACACTTTTAATTAAGCCTCT--TGTCGTGTCAA--ATT-------------------------------------AAA-CAATT--------------ATAGCTAGAAAAT-AAACTGAATTTA--------------------------GAGTCTTATCAGAGAAC--AAGCCAAC------CGCACAGCATTT-CCACCTATAAAGAA-GGCACT----GA--TCTCGGCGATGAG-GCAG------TTG--AAAGC------CTATT--------GAATGTGGCAATTGTTG---ATAGTCTTGGCCTGCCTGTTA-CC-T----GGCTACCTCTGGGTGCAG
droSec2 scaffold_0:7630111-7630423 - dse_459 ATGTCCTATTGGCTACGCATTCGATCCCCAAACTGGAGCTTGTGGTGGACGCATACGTA---GCTC----------CAGCGATTGTACTTT-----CAAGTGAACA--TA---------------------A---TC--------------GC--ACAACACTTTTAATTAAGCCTCT--TGTCGTGTCAA--ATT-------------------------------------AAA-CAATT--------------ATAGCTAGAAAAT-AAACTGAATTTA--------------------------GTGTCTTATCAGAGAAC--AAGCAAGC------CGCACAGCATTT-CCACCTATAAAGAA-GGCACT----GA--TCTCGGCGATGAG-GCAG------TTG--AAAGC------CTATT--------GAATGTGGCAATTGTTG---ATAGTCTTGGCCTGCCTGTTA-CC-T----GGCTACCTATGGTTGCAG
droYak3 3L:18036286-18036601 - ATGTCCTATTGGCTATGCATTCGATCCCCAAACTGGAGCTTGTGGTGGTCGCATACGCA---GCTC----------CAGCGATTGTATCTT-----TAAGTGAAAA--TA---------------------A---TC--------------GC--AGAGCACTTTTAATTAAGCCTCT--TGTAGTGTCAA--ATA-------------------------------------A-A-CCATA--------------ATAGCTAGAAAAT-AAAGTGAGTTTA--------------------------GAGTCTTATCAGAGAAC--AAGCTAACCAGC--CGCACAGCATTT-CCACCTATAAAGAA-GGCACT----GA--TCTCGGCGATGAG-GCAG------TTG--AAAGC------CTATT--------GAATGTGGCAATTGTTG---TTAGTCTTGGCCTGCCTGCTA-CC-T----GGTTGCCTCCGGGTGCAG
droEre2 scaffold_4784:17778390-17778705 - der_840 ATGTCCAATTGGCTATGCATTCGATCCCGAGACTGGAGCTTGTGGTGGTCGCAAACGCA---GCTC----------CAGAGATTGTGTCTT-----AAGGTGAAAA--TA---------------------G---TC--------------GC--ACAGCACTTTTAATCAAGCCTCT--TGTCGTGTCAA--ATT-------------------------------------AAA-CCATT--------------ATAGCTAGAAAAT-AAAATGAATTTA--------------------------GAGTCTTATCAGAAAAC--AACGAAG-CAGC--CGCACCGCATTT-CCACCTATAAAGGA-GGCGCT----GA--TCTCAGCGATGAG-GCAG------TTG--AAAGC------CTATT--------GAATGTGGCAATTGTCG---TTAGTCTTGGCCTGCCTGCTA-CC-T----GGTTACCCCTGGTTGCAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
GTGCCCCATCGGCTATGCCTACAACGAGCTGGGCGGCACGTGCAGCGGACGCATCCAAG---ATGTGGCCGCGTGCCGTCAGCCGTGAGCT-----GAGGCGAACA------------------------------------------------------TTTACCAATTAAGCTTTT--CGTTGTCTTTG--CTA-------------------CGTTTTTT-TTT----------TATGTTGTGCTGTGCAATTAACACAATTAATA-AATATGAACTAA--------------------------TCGCCTTATCGAACTGC--GAACTGTG------TGCGCCTC-TAA-ACGCCTATAAAGCA-GCCGACTCC-GG--------CTGCGGA-TCT-------------------CAACAGTAT--------TGATGTTGAAAGTTCTAACAATTGTCATTGGCTGCCTGCTG-GCCTTGCTGGGCTC---CGGA--TCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................TTTT-TTT----------TATGTTGTGCTGTGCA...........................................................................................................................................................................................................................................................2312.002200000000000000000000000000000000000000000000000000000000000000
......................................CGTGCAGCGGACGCATCCAAG---AT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000010000000000000000000000000000000000000000000000
.....................................ACGTGCAGCGGACGCATCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................GTTTTTT-TTT----------TATGTTGTGCTGT..............................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................T----------TATGTTGTGCTGTGCAATTAAC.....................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................CGCGTGCCGTCAGCCGTGAGCT-----........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
.........................GAGCTGGGCGGCACGTGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................CTTTG--CTA-------------------CGTTTTTT-TTT----------T..........................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
................GCCTACAACGAGCTGGGCGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
.....................................................................CGCGTGCCGTCAGCCGTGAGCT-----GAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
....................................................ATCCAAG---ATGTGGCCGCGTGCCGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................TT--CGTTGTCTTTG--CTA-------------------CGTTTTTT-TT......................................................................................................................................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................GAACA------------------------------------------------------TTTACCAATTAAGCTTTT--CGTT................................................................................................................................................................................................................................................................................................................................2711.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TTT-TTT----------TATGTTGTGCTGTGCAATT........................................................................................................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................A------------------------------------------------------TTTACCAATTAAGCTTTT--C...................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
....................ACAACGAGCTGGGCGGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000010
......................................................CCAAG---ATGTGGCCGCGTGCCGTC........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
............CTATGCCTACAACGAGCTGGGCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
............................................................................CGTCAGCCGTGAGCT-----GAGGCGA.................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
..................CTACAACGAGCTGGGCGGCACGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................AATTAAGCTTTT--CGTTGTCTTTG--CTA-------------------C................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TTTACCAATTAAGCTTTT--CGTT................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
..................CTACAACGAGCTGGGCGGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
......................................CGTGCAGCGGACGCATCCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...........GCTATGCCTACAACGAGCTGGGCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................................ATTAAGCTTTT--CGTT................................................................................................................................................................................................................................................................................................................................1530.331000000000000000000000000000000000000000000000000000000000000001
droMoj3
GTGTCCCATTGGCTATGCCTACAGCGAGCAGCTCGGCACGTGCAGCGGACGCATCGCGG---A-TC----------AGCT----------------GCCGCGAAC------------------------------------------------------ATGTTTCAATTAAGACTCT--CA-CTTGTCAC--CTGTGGCAATTTCTCGATGCTTCTGTTGTTCTTTTAATTGGCAATTATG-----ACAGCAATTAATACAAAATAAA-ACTGTGAGCTAA--------------------------TCACCTTATCTAAG--------------------GCACTGGGGCT-ACTACTATAAAGCA-GACGGT----GCCAGCTCGGCTGTTAG-CCAG------TTG--CGAAACGCAATTCGTT--------TTATGTTGCAGCTTCTT---TTGGCATTGAGCTGCCTGTGG-CC-C----TTGGAG---------TGGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTGTCCCATTGGTTATGCGTTCAATGAGCCAAATGGCACCTGCAGTGGACGCATCGCTG---ACAT----------ACCGGATTGTAGGCA-----ATAAA------------------------------A---AA--------------GA-ACATATTTTTTTAATTAAGAACTA--TGTTGTGTTAA--ACT-------------------------------------GTA-TTGTA--------------ACAAATA--AAAA-AATATGAGCTAA--------------------------CTGCCTTATCGTAGTACATGAGCCGAA-----------------T-GCGCCTATAAAGCA-CACGTCTTTTGG--TGTCTTCGCCA---ACAGTTATCGTCG--AGGC---CAAGTAATT--------TTATGTTGAAACTGCTA---ATTGTAATTGGC----TGCTG-TC-T----GCCGC----------TCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
GTGTCCCTTCTGCTACTTATTCAATACGGACAATGGCAGCTGTACAGGCCTAATGGCAA---A-------------------TTG--------------------------------------------------------------------------TTCGTTTAATTAATTTTCA--TGTTGTATCAA--ATC-------------------------------------TTT-CAGACAGTACG--------AT-ACAATACAAT-AAATTGATTTTAAAATGAAGTATTAAAGTAGCGTG--TGCATCTTATCAAATTGT--TAGATT--------------TTCGCT-TCACTTATAAAGCG-AGTGTTATTGGG--A--AATCGACGCA-ACAGTTCT--TCG--AATT-------TCTGT--------GGATGTGGAAAGTTTTG---TTACCGCTTCTTTGCCTAATGGCA-T----GGCCGG------CAGGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................C-------------------------------------TTT-CAGACAGTACG--------AT-ACA..................................................................................................................................................................................................................................................2014.00400040
............................................................................................................................................................................................CAA--ATC-------------------------------------TTT-CAGACAGTACG--------A.......................................................................................................................................................................................................................................................2112.00200020
...............................AATGGCAGCTGTACAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200020
...................................................AATGGCAA---A-------------------TTG--------------------------------------------------------------------------TTCGTTTAATTAAT...........................................................................................................................................................................................................................................................................................................................................2611.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................CT--TCG--AATT-------TCTGT--------GGATGTGG............................................................2211.00100010
.........CTGCTACTTATTCAATACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
............................................................................................................................................................................................CAA--ATC-------------------------------------TTT-CAGACAGTACG--------AT-A....................................................................................................................................................................................................................................................2311.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................CT--TCG--AATT-------TCTGT--------GGATGTGGA...........................................................2311.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG---TTACCGCTTCTTTGC.................................1911.00100010
..................................................................................................................................................................GTTTAATTAATTTTCA--TGTTGT..............................................................................................................................................................................................................................................................................................................................2211.00100010
...........................................................................................................................................................................................TCAA--ATC-------------------------------------TTT-CAGACAGTACG--------AT-.....................................................................................................................................................................................................................................................2311.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG---TTACCGCTTCTTTGCCT...............................2111.00100010
............CTACTTATTCAATACGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.............................................AGGCCTAATGGCAA---A-------------------TTG--------------------------------------------------------------------------TTCGT....................................................................................................................................................................................................................................................................................................................................................2311.00100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................CTGT--------GGATGTGGAAAGTTTTG---TTACC...........................................2611.00100010
...................................................................................................................................................................................................C-------------------------------------TTT-CAGACAGTACG--------AT-ACAAT................................................................................................................................................................................................................................................2211.00100010
..........................................................................................................................................................................................ATCAA--ATC-------------------------------------TTT-CAGACAGTACG--------AT-.....................................................................................................................................................................................................................................................2411.00100010
.........................................GTACAGGCCTAATGGCAA---A-------------------TTG--------------------------------------------------------------------------TTC......................................................................................................................................................................................................................................................................................................................................................2511.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGAAAGTTTTG---TTACCGCTT.......................................2511.00100010
............................................................................................................................................................................................CAA--ATC-------------------------------------TTT-CAGACAGTACG--------AT-ACA..................................................................................................................................................................................................................................................2511.00100010
..................ATTCAATACGGACAATGGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
dp5
GTGTCCCATTGGATATGCATTCAACGCTACGACTGGAGCTTGTGGCGGACGTACACGGA---GCTC----------CATGGACTGTACTGTACGCTGAAGTAGTGA------------G-AGCTAA----AGT--AG--------------A--GAAAACATTTTTAATTA-GCCCCG--TGTCTTGTCAA--ATA-------------------------------------AAA-TCAAT--------------TTAGCTAGCAAAT-AAATTGAGCTTAT--------------------AGCCAGAGCCTTATCTCATTGA-CGAGCGAAC------CGAAGCGAACTC-CCACCTATAAAGGA-GGCCCT----GA--CCTGGAAGATGGGAACAG------TTG--AAAGC------CTA-----------TATGTGGAAGTTGTTG---TTACTCTTTGGCTGCCTGCTG-CC-T----GGCCAT---------CAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........GATATGCATTCAACGCTACGACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030010000002
..................ATTCAACGCTACGACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030110100000
............ATATGCATTCAACGCTACGACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020020000000
........................................TGTGGCGGACGTACACGGA---GCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020010100000
................GCATTCAACGCTACGACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000002
...........................................GGCGGACGTACACGGA---GCTC----------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020020000000
....................................................ACACGGA---GCTC----------CATGGACT....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
.................................................................................................................................................................................................................................................................TAGCTAGCAAAT-AAATTGAG..................................................................................................................................................................................................................................2011.0010000100000
....................................................................................GTACTGTACGCTGAAGTAGTGA------------G-A...............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
..GTCCCATTGGATATGCATTCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTA-----------TATGTGGAAGTTGTTG---TTACT...........................................2411.0010010000000
........................................................................................TGTACGCTGAAGTAGTGA------------G-AGCTAA----A.....................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100000
.........................................................................................................................GCTAA----AGT--AG--------------A--GAAAACATTTTTAATT..............................................................................................................................................................................................................................................................................................................................................2711.0010010000000
..............................GACTGGAGCTTGTGGCGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................ATTCAACGCTACGACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
.....................CAACGCTACGACTGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
.............................................................................................GCTGAAGTAGTGA------------G-AGCTAA----AGT--AG--------------A--GA............................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
.....................................GCTTGTGGCGGACGTACACGGA---GCTC----------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
..........................................................................................................................................................GAAAACATTTTTAATTA-GCCCCG--TGC.................................................................................................................................................................................................................................................................................................................................2611.0010010000000
...........GATATGCATTCAACGCTACGACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000001
.............................CGACTGGAGCTTGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000001
.....................................................CACGGA---GCTC----------CATGGACTG...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
.........................................................................................................................GCTAA----AGT--AG--------------A--GAAAACATTTTT..................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
...........................TACGACTGGAGCTTGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000001
.....................................................................................................AGTGA------------G-AGCTAA----AGT--AG--------------A--..............................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
...................................................................................................................................................................................................A-------------------------------------AAA-TCAAT--------------TTAGCTAGCAA.............................................................................................................................................................................................................................................2011.0010100000000
..............ATGCATTCAACGCTACGACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
...................................................................................................................................................................................................A-------------------------------------AAA-TCAAT--------------TTAGCTAGCAAAT-AAATTGA...................................................................................................................................................................................................................................2911.0010010000000
.......................................TTGTGGCGGACGTACACGGA---GCTC----------............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
....................................................................................GTACTGTACGCTGAAGTAGTGA------------G-................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
................................................................................................................................................................ATTTTTAATTA-GCCCCG--TGTCTTGTC...........................................................................................................................................................................................................................................................................................................................2611.0010010000000
................................................................................................................................................................ATTTTTAATTA-GCCCCG--TGTCT...............................................................................................................................................................................................................................................................................................................................2211.0010000100000
.....................................................................................................................................................................................GTCTTGTCAA--ATA-------------------------------------AAA-TCAAT--------------T.......................................................................................................................................................................................................................................................2211.0010010000000
........................................TGTGGCGGACGTACACGGA---GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
.............................CGACTGGAGCTTGTGGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
...........................TACGACTGGAGCTTGTGGCGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
..........................................................................................................................................................GAAAACATTTTTAATTA-GCCCCG--T...................................................................................................................................................................................................................................................................................................................................2411.0010010000000
........................................................GGA---GCTC----------CATGGACTGTACTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
..............................................................GCTC----------CATGGACTGTACTGTACG..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....................................AGCTTGTGGCGGACGTACACGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
.......................................................................................................................................................................................CTTGTCAA--ATA-------------------------------------AAA-TCAAT--------------........................................................................................................................................................................................................................................................1911.0010010000000
..............ATGCATTCAACGCTACGACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
................................................................................................................................................................................................................................................................TTAGCTAGCAAAT-AAATTGA...................................................................................................................................................................................................................................2011.0010010000000
....................................................................................GTACTGTACGCTGAAGTAGTGA------------G-AGC.............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000001
.............................................................................ATGGACTGTACTGTACGCTGAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
....................................................................................GTACTGTACGCTGAAGTAGTGA------------T-................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
...........GATATGCATTCAACGCTACGACTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
............ATATGCATTCAACGCTACGACTGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
................GCATTCAACGCTACGACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
..........................CTACGACTGGAGCTTGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
.........................................................................................................................GCTAA----AGT--AG--------------A--GAAAACATT.....................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGAAGTTGTTG---TTACT...........................................2011.0010100000000
.............................................CGGACGTACACGGA---GCTC----------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000001
...........................................................................................................................................................................................................................................A-TCAAT--------------TTAGCTAGCAAAT-..........................................................................................................................................................................................................................................1911.0010010000000
...............................................................................................................................................................................................................................................AAT--------------TTAGCTAGCAAAT-AAATTGAGC.................................................................................................................................................................................................................................2511.0010010000000
.......................................................................................................................................................................................................................................................................GCAAAT-AAATTGAGCTTAT--------------------.........................................................................................................................................................................................................1911.0010010000000
........................................................GGA---GCTC----------CATGGACTGTACTGTACGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000001
...........................................................................................ACGCTGAAGTAGTGA------------G-AGCTAA----A.....................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
............................................................................................CGCTGAAGTAGTGA------------G-AGCTAA----A.....................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
.................................................................................................................................................................................................................................................................TAGCTAGCAAAT-AAATTGAGC.................................................................................................................................................................................................................................2111.0010000100000
............................................................................................................................................................AAACATTTTTAATTA-GCCCCG--TGTCTT..............................................................................................................................................................................................................................................................................................................................2711.0010010000000
............................................GCGGACGTACACGGA---GCTC----------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............TATGCATTCAACGCTACGACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
..........................................................................................................................................................GAAAACATTTTTAATTA-GCCCCG--TGT.................................................................................................................................................................................................................................................................................................................................2611.0010010000000
.........................................................................................GTACGCTGAAGTAGTGA------------G-AGCT............................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
.............................................................................................GCTGAAGTAGTGA------------G-AGCTAA----AGT--AG--------------A--G.............................................................................................................................................................................................................................................................................................................................................................2711.0010000100000
.........................................................................................GTACGCTGAAGTAGTGA------------G-AGCTAA----A.....................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
droPer2
GTGTCCCATTGGATATGCATTCAATGCTACGACTGGAGCTTGCGGCGGACGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................CATTCAATGCTACGACTGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.003300000
............ATATGCATTCAATGCTACGACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
.................CATTCAATGCTACGACTGGAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................CATTCAATGCTACGACTGGAGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
......................AATGCTACGACTGGAGCTTGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.....................CAATGCTACGACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.................CATTCAATGCTACGACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
............ATATGCATTCAATGCTACGACTGGAGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
..................ATTCAATGCTACGACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................ACGACTGGAGCTTGCGGCGGACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.......................ATGCTACGACTGGAGCTTGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
...........................TACGACTGGAGCTTGCGGCGGACGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
....................TCAATGCTACGACTGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......ATTGGATATGCATTCAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..................ATTCAATGCTACGACTGGAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droAna3
GTGTCCCATAGGATATGCCTTCAATGGCGATACCGGAGCATGTGGGGGACGCCTTCAAA---ATTT----------CGTTGACTGTACGCT-----AAAGTGAAAA--CAATATATA-TT--------------AAC--------------T--GAAATCACTTTTAATTAAGCCTCTATTGTCATGTCAA--ATT-------------------------------------AATTTCATT--------------AAAGCTAGAAAAT-AAACTGAATTTA--------------------------GAGTCTTATCAGCGAAC--AAGCACGA------GGAGTCATAGTC-CCACCTATAAAGACTGCCACT----GA--TCCGAGAGAGGAAAACAG------TCG--AAAGC------CTAT---------ATATGTGGCAG---TTG---ATACTTCTGGCCTGCCTGCTG-CC-T----GGCCTC---------CAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................ATTGTCATGTCAA--ATT-------------------------------------AATTTC.........................................................................................................................................................................................................................................................................2211.001010000
............................GATACCGGAGCATGTGGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......................................................................................................................................AAC--------------T--GAAATCACTTTTAATTAAGCCTCT......................................................................................................................................................................................................................................................................................................................................2811.001010000
...........................................................................................................................................................................................................................................TTTCATT--------------AAAGCTAGAAAAT-AAAC......................................................................................................................................................................................................................................2411.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---TTG---ATACTTCTGGCCTGC.................................2011.001010000
.............................................................................................................................................................ATCACTTTTAATTAAGCCT........................................................................................................................................................................................................................................................................................................................................1911.001010000
.....................................................................................................GAAAA--CAATATATA-TT--------------AAC--------------T--GAAATCACT.....................................................................................................................................................................................................................................................................................................................................................2911.001010000
.......................................................CAAA---ATTT----------CGTTGACTGTACGCT-----AAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..........................................................A---ATTT----------CGTTGACTGTACGCT-----AAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
.........................................................................................................................................................................................................................................................................AAAT-AAACTGAATTTA--------------------------GAGC................................................................................................................................................................................................2011.001010000
....................................................CTTCAAA---ATTT----------CGTTGACC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................................................................................................................................AC--------------T--GAAATCACTTTTAATTAAGCCT........................................................................................................................................................................................................................................................................................................................................2511.001010000
..........................GCGATACCGGAGCATGTGGGGGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.........................................................................................................................................................................................................................................................................AAAT-AAACTGAATTTA--------------------------GA..................................................................................................................................................................................................1811.001010000
......................................................TCAAA---ATTT----------CGTTGACTGTACGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.............................................................................GTTGACTGTACGCT-----AAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
..GTCCCATAGGATATGCCTTCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
.................................................CGCCTTCAAA---ATTT----------CGTTGACC....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
................................................................................................................................................................................CTATTGTCATGTCAA--ATT-------------------------------------AATTTCATT--------------........................................................................................................................................................................................................................................................2711.001010000
...............................................................................................................TATATA-TT--------------AAC--------------T--GAAATC........................................................................................................................................................................................................................................................................................................................................................1811.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................G------TCG--AAAGC------CTAT---------ATATGTGGCA..........................................................2311.001001000
...................................................................................................................................................................TTTAATTAAGCCTCTATTGTC................................................................................................................................................................................................................................................................................................................................2111.001010000
................................................ACGCCTTCAAA---ATTT----------CGTTGACTGTAC................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..........................................................................................................................................................GAAATCACTTTTAATTAAGCCT........................................................................................................................................................................................................................................................................................................................................2211.001010000
...............................................................................................................TATATA-TT--------------AAC--------------T--GAAATCACC.....................................................................................................................................................................................................................................................................................................................................................2111.001010000
............................GATACCGGAGCATGTGGGGGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---TTG---ATACTTCTGGCCTGCCTG..............................2311.001010000
..............ATGCCTTCAATGGCGATACCGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................GATACCGGAGCATGTGGGGGACGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.......................................................................................................AAA--CAATATATA-TT--------------AAC--------------T--GAAATCACT.....................................................................................................................................................................................................................................................................................................................................................2711.001010000
..................................................................................................................................................................TTTTAATTAAGCCTCTATT...................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................................................CAAA---ATTT----------CGTTGACTGTACGCT-----A.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...............TGCCTTCAATGGCGATACCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
................................................................................................................ATATA-TT--------------AAC--------------T--GAAATCACT.....................................................................................................................................................................................................................................................................................................................................................2011.001010000
..............ATGCCTTCAATGGCGATACCGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droBip1
GTGTCCTATCGGATATGCCTTCAATGGTGACACCGGAGCATGTGGTGGAAGGCTTCAAA---ATTT----------TGTCGATTGTACGCT-----GAAGTGAAAA--TAATGTATA-TA--------------AAC--------------T--GAAATCACTTTTAATTAAGCCTCTATTGTCGTGTCAA--ATT-------------------------------------AATTTCATT--------------AAAGCTAGAAAAT-AAAAAGAATTTA--------------------------GAGTCTTATCAGCGAAC--AAGCTAGA------CGAGTCATAGTC-CCACCTATAAAGACCGGCCCT----GA--TCCGAAAGATGAAAACAG------TCG--AAAGC------CTAT---------ATATGTGGCAG---TTG---ATACTTCTGGCCTGCCTGCTG-CC-T----GGCCTC---------CAGSizeHit CountTotal NormTotal
No Reads
droKik1
ATGTCCCTTTGGATATGCATTTGACGCCGAAACTGGAGCATGTGGTGGCCTTATACGGA---ACAG----------CGTCAACTGTACAAT-----GAGGTGAAGAGCTA-------AA-AAC-------------AAGAAACAAATGAAAA--AAAAGAACTTTTAATTAAGCCCCTTGTGTCATGTCAA--ATA-------------------------------------AAA-TCATT--------------ATAGCTAGAAAAT-AAACTGAATTAAG--------------------AG--AGAGTCTTATCGCAAAAACCAAGCAAAA------CGAA---------CCACCTATAAAGAA-GGCTCT----GA--TCGGGAAGATGGG-ACAG------TTG--AAAGC------CTA-----------TATGTGGCAGCTATTG---ATTGTGTTCGCCTGCCTGTCA-CC-T----GGCTACCAC------CAGSizeHit CountTotal NormTotal
No Reads
droFic1
ATGTCCTATTGGCTACGCCTTCGATCCCGAAACTGGAGCTTGTGGTGGCCGCATACGCA---GCTC----------AGACGATTGTATTTT-----GAAATAAGAAATTA-------ATA-----AAAAAAGAA-AA--------------A--ACAAACACTTTTAATTAAGCCCCT--TGTCGTGTCAA--ATA-------------------------------------AAA---------------------TAGCTGGAAAAT-CAAACGAATTTT--------------------------GTGTCTTATCGAAGTAC--AAGCAAAG------TGTTGCGTATTTTTTAGCTATAAAGTA-GGTTCT----GA--TCTCTCGGATGAG-ACAG------TTG--AAAGC------TTGTT--------TTATGTGGCGGTTGTTG---ATATTGCTGGCCTGCCTGTTA-CC-T----CATTGT---------CAGSizeHit CountTotal NormTotal
No Reads
droEle1
ATGTCCTATTGGCTATGTCTTCGATTCGGAGAGTGGAGCTTGTGGTGGTCGTAAACGAG---ATTC----------GGCCGATTGTACGAT-----GAAATAAAAAGTTA-------ATAAGCTAAAAAAACAA-AA--------------GA--AGAAATCATTCAATTAGGCTTCT--TGTCATGTCAA--CTA-------------------------------------------------------------AAGCTAGAAAAT-AAAATTAACCAA--------------------------GAGTCTTATCAGATAAC--AAGCGAAACAGTAATGAACAGTATTT-GCACCTATAAAGAA-GGCTCT----GA--TCCGCGAGATGAG-ACAG------TCGAAACAGT------CTA-----------TATGTGGCAGTTGTTG---ATTGTCTTTGGCTGCCTGTTA-CC-T----GTAAAT---------CAGSizeHit CountTotal NormTotal
No Reads
droRho1
ATGTCCCATTGGATACGTCTTCGACACCGAAACTGGGGCATGTGGTCGTC---AGCGAG---CTTC----------TGCCGATTGTACGTT-----AAAATAAAAGGCTA------------------------AAC--------------A-----GAACCAATTAATTAAGCCTCT--TGTCGTGTCAA--ATA-------------------------------------AAA-TCATT--------------ATAGCTAGAAAAT-AAAATGAATTTA--------------------------GCGTCTTATCAGAGAAC--AAGCAATC------CGAACAGAATTT-CCACCTATAAAGAA-GGCTCT----GA--TCCGCGAGATGAG-ACAG------TTG--AAAGT------CTA-----------TATGTGGCAGTTGTTG---ATAGTCTTTGGCTGCCTGTTG-CC-T----GGATAT---------CAGSizeHit CountTotal NormTotal
No Reads
droBia1
GTGTCCCATTGGATATGCCTTCGATTCGCAAACTGGAGCTTGCGGGGGTCGCATAAGAA---ACTC----------CGACGACTGTGCGCT-----GAAGTAGAGGA-AAGCCGACA-AA-----------A---TC--------------AC--ACACCACTTTTAATTAGGCCTCT--TGTCATGTCAA--ATA-------------------------------------AAG-TCGTT--------------ATAGCTAGGAAAT-AAAATGAATTTG--------------------------GAGTCTTATCTGAGAAC--AAGCAAAC------CGAAGCGTATTT-CCACCTATAAAGAA-GGCTCT----GA--TCTGGGCGATGAG-GCAG------TAT---AAGC------CTATT--------AAATGTGGCAATTGTTG---ATATTCCTGGCCTGCCTGCTG-CC-T----GGCCAC---------CAGSizeHit CountTotal NormTotal
No Reads
droTak1
ATGTCCTATCGGCTATGCCTTCGATTCTCAAACTGGAGCTTGCGGTGGTCGCATAAGAA---ACTC----------CAACGATTGTACGCT-----GAAGTAAAA-----------------------------------------------------------TTAATTAAGCCTCT--TGTCATGTCAAAAATA-------------------------------------AAA-TCATT--------------ATAGCTAGAAAAT-AAAATGAATTTA--------------------------CCGTCTTATCACTGAAC--AAGCTAAA------CGAACCGTATTTCCCACCTATAAAGAA-GGCTCT----GA--TCTGCGCGATGAG-TTAG------TTG--AAAGG------TTATTATTTCCAGATATGTGGCAATTTTTG---ATAGTCTTGGCCTGCCTGTTG-CC-T----GGCCAC---------CAGSizeHit CountTotal NormTotal
No Reads
droEug1
ATGTCCTATTGGCTATGCCTTCGATTCGGAAACTGGAGCTTGTGGTGGTCTCATAAGAA---ACTC----------CAATGATTGTACTTT-----AAAGTAAAAA--TA---------------------A--AACAGAAAGAACTTAAAGCAGAAATCACTTTTAATTAAGCCTCT--TGTCATGTCAT--ATA-------------------------------------AAA-TCATT-------------AATAGCTAGAAAAT-AAAATGAATTTA--------------------------GAGTCTTATCAATGAAC--AAGCAAAA------TGAA---------CCAGCTATAAAGAA-GCCACT---GGA--TCTGTTCGATGAG-ACAG------TTG--AAAGC------CAATT--------ATATGTGGAAATTGTTG---ATAGTCTTGGCCTGCCTGTTG-CC-T----GGCTAC---------CAGSizeHit CountTotal NormTotal
No Reads
dm3
ATGTCCTATTGGCTACGCATTCGATCCCCAAACTGGAGCTTGTGGTGGACGT--ACGTAATCGCTC----------CAGCGATTGTACTTT-----AAAGTGAAAA--TA---------------------A---TC--------------GC--ACCAAACTTTTAATTAAGCCTCT--TGTCGTGTCAA--ATT-------------------------------------AAA-CAATT--------------ATAGCTAGAAAATAAAAATGAATTTA--------------------------GAGTCTTATCAGAGAAC--AAGCAAAC------CGCACAGCATTT-CCACCTATAAAGAA-GGCACT----GA--TCTCGGCGATGAG-GCAG------TGCAGAAAGC------CTATT--------GAATGTGGCAATTGTTG---ATAGTCTTGGCCTGCCTGTTA-CC-T----GGCTACCTCTGGGTGCAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGC------CTATT--------GAATGTGGCAATTGT.....................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AAAATGAATTTA--------------------------GAGTCTTAT...........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AATT--------------ATAGCTAGAAAATAAA........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............CTACGCATTCGATCCCCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AAACTGGAGCTTGTGGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................AGC------CTATT--------GAATGTGGCA..........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................GCCTCT--TGTCGTGTCAA--ATT-------------------------------------AAA-C..........................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CGGCGATGAG-GCAG------TGCAGAA..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................CATTCGATCCCCAAACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ATAAAAATGAATTTA--------------------------GAGTCT..............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--------GAATGTGGCAATTGTTG---A...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................TC----------CAGCGATTGTACTTT-----AAAGTGAAAA--T...........................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................TATCAGAGAAC--AAGCAAA..........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................ATAAAAATGAATTTA--------------------------GAGTCTT.............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................ATTCGATCCCCAAACTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CCCCAAACTGGAGCTTGTGGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATGTCCTATTGGCTTCGCATTCTATCCCCAAACTGGAGCTTGTGGTGGACGCATACGTA---GCTC----------CAGCGATTGTACTTT-----CAAGTGAACA--TA---------------------A---TC--------------GC--ACAACACTTTTAATTAAGCCTCT--TGTCGTGTCAA--ATT-------------------------------------AAA-CAATT--------------ATAGCTAGAAAAT-AAACTGAATTTA--------------------------GAGTCTTATCAGAGAAC--AAGCCAAC------CGCACAGCATTT-CCACCTATAAAGAA-GGCACT----GA--TCTCGGCGATGAG-GCAG------TTG--AAAGC------CTATT--------GAATGTGGCAATTGTTG---ATAGTCTTGGCCTGCCTGTTA-CC-T----GGCTACCTCTGGGTGCAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................TC----------CAGCGATTGTACTTT-----CAAGTGAAC...............................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000000000000000
................................................................................................................................................................ACTTTTAATTAAGCCTCT--TGTC................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
.......ATTGGCTTCGCATTCTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TG--AAAGC------CTATT--------GAATGTGG............................................................2011.00100010000000000000
..............................................................................GCGATTGTACTTT-----CAAGTGAACA--TA---------------------A---TC--------------.................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
.................................................................C----------CAGCGATTGTACTTT-----CAAGTGAACA--T...........................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.........................................................................................................................................................................................................................................................................AAAT-AAACTGAATTTA--------------------------GA..................................................................................................................................................................................................1811.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................TATAAAGAA-GGCACT----GA--TCTCGGCG.................................................................................................................2511.00100000000000001000
......................................................................................................................................................................................................................................................................AGAAAAT-AAACTGAATTTA--------------------------GAG.................................................................................................................................................................................................2211.00101000000000000000
...............................................................CTC----------CAGCGATTGTACTTT-----CA......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
droSec2
ATGTCCTATTGGCTACGCATTCGATCCCCAAACTGGAGCTTGTGGTGGACGCATACGTA---GCTC----------CAGCGATTGTACTTT-----CAAGTGAACA--TA---------------------A---TC--------------GC--ACAACACTTTTAATTAAGCCTCT--TGTCGTGTCAA--ATT-------------------------------------AAA-CAATT--------------ATAGCTAGAAAAT-AAACTGAATTTA--------------------------GTGTCTTATCAGAGAAC--AAGCAAGC------CGCACAGCATTT-CCACCTATAAAGAA-GGCACT----GA--TCTCGGCGATGAG-GCAG------TTG--AAAGC------CTATT--------GAATGTGGCAATTGTTG---ATAGTCTTGGCCTGCCTGTTA-CC-T----GGCTACCTATGGTTGCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................ATTCGATCCCCAAACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040040
.....................................GCTTGTGGTGGACGCATACGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030030
.....................................GCTTGTGGTGGACGCATACGTA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030030
.........................................................................................................................................................................................................................................AAA-CAATT--------------ATAGCTAGAAAA............................................................................................................................................................................................................................................2012.0020020
.................................................................................................................................................................................................ATT-------------------------------------AAA-CAATT--------------ATAGCTAGAAA.............................................................................................................................................................................................................................................2212.0021010
.......................................................................................................................................................................................................................................................................................TTA--------------------------GTGTCTTATCAGAGA.....................................................................................................................................................................................1812.0020020
.........................CCCCAAACTGGAGCTTGTGGTGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.....................................................................................................GAACA--TA---------------------A---TC--------------GC--ACAACACT.....................................................................................................................................................................................................................................................................................................................................................2011.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTTG---ATAGTCTTGGCCTGCCT...............................2411.0010010
...................................................................................................................................................................................................T-------------------------------------AAA-CAATT--------------ATAGCTAGAAAAT-AAACT.....................................................................................................................................................................................................................................2711.0010010
............................................................................CAGCGATTGTACTTT-----CAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
....................................................ATACGTA---GCTC----------CAGCGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
......................................CTTGTGGTGGACGCATACGTA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.....CTATTGGCTACGCATTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.......................................................................................................................................................................................................................................................................GAAAAT-AAACTGAATTTA--------------------------GT..................................................................................................................................................................................................2011.0010010
.......................................TTGTGGTGGACGCATACGTA---GCTC----------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.............TACGCATTCGATCCCCAAACTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.....CTATTGGCTACGCATTCGATCCCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
......................................................................................................................................................................................................................................................................................TTTA--------------------------GTGTCTTATCAGAG......................................................................................................................................................................................1811.0010010
........................................TGTGGTGGACGCATACGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............ACGCATTCGATCCCCAAACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................T--------GAATGTGGCAATTGTTG---ATA.............................................2111.0010010
.........................................................................................................................................................................TAAGCCTCT--TGTCGTGTCAA--.......................................................................................................................................................................................................................................................................................................................2011.0010010
..........................................................................................................................................................................................................................................AA-CAATT--------------ATAGCTAGAAA.............................................................................................................................................................................................................................................1811.0010010
.....................................GCTTGTGGTGGACGCATACGTA---G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
...............CGCATTCGATCCCCAAACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..................................................................................................................................................................................................TT-------------------------------------AAA-CAATT--------------ATAGCTAGAA..............................................................................................................................................................................................................................................2011.0010010
..GTCCTATTGGCTACGCATTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
ATGTCCTATTGGCTACGCATTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAATTGTTG---ATAGT...........................................1811.0010010
.......................................TTGTGGTGGACGCATACGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATT--------GAATGTGGCAATTGTTG---................................................2011.0010010
..........................................................................................................................................................................................GTCAA--ATT-------------------------------------AAA-CAATT--------------ATAGCTAGAAA.............................................................................................................................................................................................................................................2711.0010010
............CTACGCATTCGATCCCCAAACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
..GTCCTATTGGCTACGCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..........................................................A---GCTC----------CAGCGATTGTACTTT-----CAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
......................................CTTGTGGTGGACGCATACGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.................................................CGCATACGTA---GCTC----------CAGCGATT....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
................GCATTCGATCCCCAAACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
........................................TGTGGTGGACGCATACGTA---G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.....................................GCTTGTGGTGGACGCATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
droYak3
ATGTCCTATTGGCTATGCATTCGATCCCCAAACTGGAGCTTGTGGTGGTCGCATACGCA---GCTC----------CAGCGATTGTATCTT-----TAAGTGAAAA--TA---------------------A---TC--------------GC--AGAGCACTTTTAATTAAGCCTCT--TGTAGTGTCAA--ATA-------------------------------------A-A-CCATA--------------ATAGCTAGAAAAT-AAAGTGAGTTTA--------------------------GAGTCTTATCAGAGAAC--AAGCTAACCAGC--CGCACAGCATTT-CCACCTATAAAGAA-GGCACT----GA--TCTCGGCGATGAG-GCAG------TTG--AAAGC------CTATT--------GAATGTGGCAATTGTTG---TTAGTCTTGGCCTGCCTGCTA-CC-T----GGTTGCCTCCGGGTGCAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............ATGCATTCGATCCCCAAACTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTTG---TTAGTCTTGGCCC...................................2120.50100100000000
..GTCCTATTGGCTATGCATTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010000000
...............................................................CTC----------CAGCGATTGTATCTT-----TAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................2320.50100100000000
......................................................ACGCA---GCTC----------CAGCGATTGTATC...............................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100100000000
droEre2
ATGTCCAATTGGCTATGCATTCGATCCCGAGACTGGAGCTTGTGGTGGTCGCAAACGCA---GCTC----------CAGAGATTGTGTCTT-----AAGGTGAAAA--TA---------------------G---TC--------------GC--ACAGCACTTTTAATCAAGCCTCT--TGTCGTGTCAA--ATT-------------------------------------AAA-CCATT--------------ATAGCTAGAAAAT-AAAATGAATTTA--------------------------GAGTCTTATCAGAAAAC--AACGAAG-CAGC--CGCACCGCATTT-CCACCTATAAAGGA-GGCGCT----GA--TCTCAGCGATGAG-GCAG------TTG--AAAGC------CTATT--------GAATGTGGCAATTGTCG---TTAGTCTTGGCCTGCCTGCTA-CC-T----GGTTACCCCTGGTTGCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................ACTTTTAATCAAGCCTCT--TGTC................................................................................................................................................................................................................................................................................................................................2212.0020101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATTGTCG---TTAGTCTT........................................1911.0010100000
..........................................................................................................................................................................AAGCCTCT--TGTCGTGTCA..........................................................................................................................................................................................................................................................................................................................1811.0010001000
..................ATTCGATCCCGAGACTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
..................ATTCGATCCCGAGACTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.............................................................................AGAGATTGTGTCTT-----AAGGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
...................................................................................................................................................................................................T-------------------------------------AAA-CCATT--------------ATAGCTAGAA..............................................................................................................................................................................................................................................1911.0010001000
.................................................................................ATTGTGTCTT-----AAGGTGAA................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
............................................................................CAGAGATTGTGTCTT-----AAGGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTCG---TTAGTCTTGGCCTGCCTGC.............................2711.0010100000
.........................CCCGAGACTGGAGCTTGTGGTGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000
..........................................................A---GCTC----------CAGAGATTGTGTCTT-----AAGGT...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
................................................................................GATTGTGTCTT-----AAGGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
.................................................CGCAAACGCA---GCTC----------CAGAGATTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
.................CATTCGATCCCGAGACTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
.....................................................................................................................................................................................................................................................................................ATTTA--------------------------GAGTCTTATCAGAA......................................................................................................................................................................................1911.0010001000
....................................................................................................................................................................................................................................................................................AATTTA--------------------------GAGTCTTATCAGA.......................................................................................................................................................................................1911.0010001000
...................................................................................................................................................................................................T-------------------------------------AAA-CCATT--------------ATAGCTAGAAAAT-AA........................................................................................................................................................................................................................................2411.0010100000
..............................................................................GAGATTGTGTCTT-----AAGGTGA.................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
..........................................................................................................................................................................................................................................................................AAT-AAAATGAATTTA--------------------------GAGTCC..............................................................................................................................................................................................2111.0010100000

Generated: 05/16/2015 at 09:03 PM