ID:

dvi_20679

 Coordinate:

scaffold_13049:19441273-19441423 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.4 -9.4 -9.4 -9.4

Flybase annnotation

exon [dvir_GLEANR_13690:2]; CDS [Dvir\GJ13830-cds]; intron [Dvir\GJ13830-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAAATTTCTTATTCTTCGTCGTTGTTGCTATCGCATTTCGTATTGAGCTGACAGAAGCCAAGAAGCAGATGACAGATGCAAAACTAAAATCTACGTGCAAATTTGTGAAATTCATTGAAGATTAAGATAACAAACGAATGCTGAGGCATTGGTGCAAATAATTCTAATTATACAACAGCCCAACTGTGTTCCCCTCAAAGGCCGAAACTGGTTATACACACAGCGACGACAACGACAGCGACGACGACGA
***************************************************************************************************************************...(((.(((.......((((....(((((...........))))).......)))).....))))))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 SRR060663
160_0-2h_embryos_total
 SRR060669
160x9_females_carcasses_total
 SRR060671
9x160_males_carcasses_total
 M028
head
 M061
embryo
 SRR060664
9_males_carcasses_total
 SRR060672
9x160_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060678
9x140_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR060687
9_0-2h_embryos_total
 M047
female body
 V116
male body		 SRR060682
9x140_0-2h_embryos_total
 SRR060684
140x9_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 GSM1528803
follicle cells		 SRR060681
Argx9_testes_total
 SRR060655
9x160_testes_total
 M027
male body		 SRR060657
140_testes_total
 SRR060675
140x9_ovaries_total
 SRR060676
9xArg_ovaries_total
..........................................................................................................................................................................ATACAACAGCCCAACTGTGTT............................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAAGATAACAAACGAATGCT............................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ATCGCATTTCGTATTAAGCTG........................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ATCGCATTTCGTATTGAGCTG........................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AAACGAATGCTGAGGCATTGGT................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................CGTCGTTGTTGCTATCGC........................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................CAGAAGCCAAGAAGCAGATGACAGATGC........................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTCCCCTCAAAGGCCGAAACTGGTTAT................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................GTTGCTATCGCATTTCGTATTG............................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................GCTGAGGCATTGGTGCAAA............................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AGATAACAAACGAATGCTGAGGCA...................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAAGATAACAAACGAATGCTGAGGC....................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TAAGATAATAAACGAATGCTGAGGCATT.................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTCGTATTGAGCTGACAGAA.................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................AAAACTAAAATCTACGTGCAAA..................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AAACGAATGCTGAGGCATTGGTGCA.............................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CAACGACAGCGACGACGACGA 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AAACGAATGCTGAGCCAT..................................................................................................... 18 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................GAAGCCAAGAAGTAGATAA.................................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............TTCGTCGATGTCGCTATCCCA....................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TACTCACTGTGACGACAAC................. 19 3 20 0.25 5 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................GATTGAAGCCAAGAAGTAGAT.................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................AAACAAATGCTGAGGGATT.................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................GAAGCCAAGAAGGAGGTGGCA................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................AACGAATGCTGAGGGGT..................................................................................................... 17 2 11 0.18 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0
....................................................................................................................TGAAGATTGAGATAAAAAA.................................................................................................................... 19 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................GAAGCCATGAAGGAGATG................................................................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TGAAGATTGAGATAAAAA..................................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0
...............TTCGTCGATGTCGCTATCCC........................................................................................................................................................................................................................ 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................TTTGCTGATAGAAGCCAAGA........................................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................CCAACTGAGTAACCCTCAAA................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................GTTCTTCACACAGCGGCGA..................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................ATAGAACCCAAGTAGCAGA..................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTTTAAAGAATAAGAAGCAGCAACAACGATAGCGTAAAGCATAACTCGACTGTCTTCGGTTCTTCGTCTACTGTCTACGTTTTGATTTTAGATGCACGTTTAAACACTTTAAGTAACTTCTAATTCTATTGTTTGCTTACGACTCCGTAACCACGTTTATTAAGATTAATATGTTGTCGGGTTGACACAAGGGGAGTTTCCGGCTTTGACCAATATGTGTGTCGCTGCTGTTGCTGTCGCTGCTGCTGCT
************************************************************...(((.(((.......((((....(((((...........))))).......)))).....))))))*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060681
Argx9_testes_total
 V053
head
 SRR060659
Argentina_testes_total
 SRR060667
160_females_carcasses_total
 SRR060677
Argx9_ovaries_total
.........................................................CGGTTCTTCGTCTACTGTCT.............................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................CTGTTGTCGGGTTGACACAAGG.......................................................... 22 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................................................................................................TGGTATGTTGTCGGGTCGACAC.............................................................. 22 3 1 1.00 1 0 0 0 0 1 0
..................................................................................................................................................................................CGGGTTGACACAAGGGGAGTT.................................................... 21 0 1 1.00 1 0 0 0 0 0 1
..........................................................................................................................................................................................................................TGTGTCGCTGCTGTTGCTGTC............ 21 0 1 1.00 1 0 1 0 0 0 0
............................GATAGCGTAAAGCATAACTCGACTG...................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................................................CGGCTTTGACCAATATGTGTGTCGCT........................ 26 0 1 1.00 1 1 0 0 0 0 0
................................................................TCGTCTACAGTCTACGTGTT....................................................................................................................................................................... 20 2 2 0.50 1 0 0 1 0 0 0
................................................................TCGTCTACTGTGTGCGTTTTC...................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0
...............................................................CTCGTCTACTGTGTACGTGTT....................................................................................................................................................................... 21 3 6 0.17 1 0 0 1 0 0 0
................................................................TCGTCTACTGGCTGCGTGTT....................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0
................................................................TCTTCTAGTGTCTACGTGTT....................................................................................................................................................................... 20 3 13 0.08 1 0 0 1 0 0 0
................................................................TCGTCTACTTTCTACGTGGT....................................................................................................................................................................... 20 3 17 0.06 1 0 0 1 0 0 0
................................................................TCTTCTACTGTCTGCGTGTT....................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:19441223-19441473 + dvi_20679 CAA----AA------------------TTTCTTA---TTCT-TC---GTC---GTTGTTGCTAT----------------------CGCA-TTTCGTATTG-A---------------------------------------------------------------------------------------------GCTGACAGAAGCCAAGAAG------CAGATGACAGATGCAAAAC-T-AAAATC------------TACG-TGC-AAA-TTTGT------GAAAT------------TC---------------------------------------ATTGAAGATTAAGATAACAAACGAATGCTG--------AGGCAT-----TGGTGCAAATAATTCT-AATTATACAACA----------GCCC-------AAC------TGTG--TT----------------------CCCC----------------------------------------------------------------------------------------------TCAAAGG-CCGAAACTGGTTATACACACA---------------------------------GCGACGACAACGACAGCGACGACGACGA
droMoj3 scaffold_6680:7159243-7159485 + CAA----AA------------------TTTCT------T----C---GTC---GCTGTTGCTAT----------------------CGCA-TATCGTATTG-A---------------------------------------------------------------------------------------------GTTGACAGAAGCCAAGAAA------CAGATGACAGAT-CAGAAC-T-AAAATC------------TACG-TGC-AAA-TTTGT------GAAAT------------TC---------------------------------------ACTGAAGATAAAGATAACAAACGAATGTTG--------AGACAG-----TGGTGCAAATAATTCT-AATTATACAACA----------GTCC-------AAC------CGTG--TT----------------------CCCC----------------------------------------------------------------------------T-----------------CAAA-GA-ACGAAACTGGTTATACACACA---------------------------------GCGACGACAACGACAGCGACGACGACG-
droGri2 scaffold_15110:17132982-17133294 + CAAACAAAAAAACAACAAAAAAGAAAACCTCA---GATACG-TT---GTCGTTGCTGCT-----GCTGTCG--------------TCGCA-TTTCGTATTG-A---------------------------------------------------------------------------------------------GCTGAAAGAAGCCAAGAAG--AAGTCAGATGACAGATGTAAAACCTAAAAATC------------GACG-TGTGAAA-TTTGT------GAAAT------------TC---------------------------------------TCGAAAGATAAAGATAACAAACGAATGCT------G--GGATAT-----TGGTGCAAACACTAGTAAATTATACAACA-------GCCCCCCAAAAAACAAC------TGGG--TTCCACC---CGCCCCATTCCC--CCCT----------------------------------------------------------------------------------------------TCAA-GA-ACGAAACTGGTTATACACACA---------------------------------GCAACGACAGCAAAAACAACGACAACAA
droWil2 scf2_1100000004837:1003590-1003881 + ATT--------------------------TTTTG--------------TT---GTT-TT-----GTTGTTG--------------TTGCA--TTCGTATTGGGCATCGGAAATCGACTGAAACTGA---A--------------------AAAAA-----------------------CTAG-------GGGCCC----------------------------GA--GCAGATGCAGAAG-T-CAAATC------------TACG-TGC-AAA-TTTGT------GAAAT------------TTAGCTA---------------GATAGCAATCGGAGCGGACACAGAAGATATAGAAAAG-------------------------------------AAAGAATTCT-AATTATACAACA----------GTCG-------TAC------AGCA--TTCCCCGAGCT---------------CC----------------------------------------------------------------------------------------------CCA---A-AAGAAACTGGTTATACTTACACACAACAGGCAAGGCAAGGCAAGGCAAGGCACAC---AGGCAGTGACAACGACAACGGCAA
dp5 XR_group6:1661258-1661557 - AAA---------------------------------------------T---------TGCTTT----------------------CGTA-TTTCGTATTG-GTACGAG-----------------TATCGTCGCACCAAGAAGCAAAAACAGCGACAGAGACACAGACACAGAGGCATA--GGCAGTG-------GCTGAGTGGAAGCAAGAAGTCGAGGCAGATGACCGATGCAGAAG-T-AAAATC------------TACG-TGC-AAA-TTC------GACAAAC------------AGAGCTAA--------------GATAGCAGT--------------------------------------TGGGGCAG--ATATAT-----TGCCGCAAACAGTTCT-AATTATACAACA----------GCCG-------TAG------TGTG--TTCCACGACCCCCCCCCCCCCCCCCTCC----------------------------------------------------------------------------------------------CGAA-GA-ACGAAACTGGTTATACACACA---------------------------------GCAACGA---------------CGACG-
droPer2 scaffold_12:2351452-2351743 - AAA---------------------------------------------T---------TGCTTT----------------------CGTA-TTTCGTATTG-GTACGAG-----------------TATCGTCGCACCAAGAAGCAAAAACAGCGACAGAGACACAGACACAGAGGCATA--GGCAGTG-------GCTGAGTGGAAGCAAGAAGTCGAGGCAGATGACCGATGCAGAAG-T-AAAATC------------TACG-TGC-AAA-TTC------GACAAAC------------AGAGCTAA--------------GATAGCAGT--------------------------------------TGGGGCAG--ATATAT-----TGCCGCAAACAGTTCT-AATTATACAACA----------GCCG-------TAG------TGTG--TTCCACGACCCC--------CCCCCTCC----------------------------------------------------------------------------------------------CGAA-GA-ACGAAACTGGTTATACACACA---------------------------------GCAACGA---------------CGACG-
droAna3 scaffold_13337:16456605-16456746 - CGTGGAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAC------------GGATTCAAGAAGCCGAGC---------------------------------------------------TGAGGCCG--TGATAT-----TGGTAATATTGGTTCT-AATTATACAA-------CCA--GCCG-------TAG---------------------------------------C----------------------------------------------------------------------------------------------CGTA-AA-GCGAAACTGGTTATACACACA---------------------------------GCAGCAAAATCAGCAGAAGCAGCAGCAG
droBip1 scf7180000396589:17511-17652 + CGTGGAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAC------------GGATTCAAGAAGCCGAGC---------------------------------------------------TGAGGCCG--TGATAT-----TGGTAATATTGGTTCT-AATTATACAA-------CCA--GCCG-------TAG---------------------------------------C----------------------------------------------------------------------------------------------CGTA-AA-GCGAAACTGGTTATACACACA---------------------------------GCAGCAAAATCAGCAGAAGCAGCAGCAG
droKik1 scf7180000301706:326758-326986 - TTG---------------------------------------------TT---GTTGCTGCCGT----------------------CGCA-TTTCGTATTG-GCATCGG-----------------TTTAGTT---------------------------------------------TT--AGCAGAT-------GTGGAGCGGAG-------GGTGAG-------------GTAAATG-T--AAATC------------CG--------AA-CCCAAATCCGATAAACGG---AG--------------AAACCGAGCTGA-GACA----------------------------------------------GGCAG--AGATATAGGGCCGCTGCAGACAGTTCT-AATTATACAA-------CCAGCGCCG-------TAC------CGTG--TT----------------------CCCC----------------------------------------------------------------------------------------------CGAA-GA-GCGAAACTGGTTATACACACAT----CA--------------------------GCAGCGA---------------CGTCG-
droFic1 scf7180000453787:231942-232198 - CAA----AA------------------GTTGTCGACGTTCG-TT---GTTGTTGTTGCT-----GCC---------------TGGCTGCATTTTCGTATTG-GCATCGGTTTTTGGTTTTTTTTTT---TTTG---------------------------------------------T----------TGGTACT--------------------------------CTGATGTACGAA-C--AAAAC------------TACG-TTT-AAT-TCGGTGACCGATAAACGT---AGAGGAGC--------------AGCTAA-GACGG-------------------------------CAAACG-------C----GAGATATAT--AGTTCCGGCAGATAGTTCT-AATTATACAA-------CCCAGCCCG-------TAG-----ACGTA--TT----------------------CCCC----------------------------------------------------------------------------C-----------------CGAA-GATCCGAAACTGGTTATACACACAT----CG-----------------------------C------------------------
droEle1 scf7180000487018:9132-9301 + AAGCCAAAAT------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA-----------ACAAG-T--GGAAGAAATCTAAAATCTGCAATCC-AAAATCTAA------AAAAT------------TC-------------CTCTTAACAAG-----------------------TG-------G-------------------------------------AAAAAACCCG-AAGTCTGCAACA----------A-----------------------------------------------------------------------------------------------------------GAATTGCCCAAAAATTACTCCC------------------TAATAAG-ACAACAG------CAGCGGCA---------------------------------GCGATAACGGCAGCAGCAGCGACAACAG
droRho1 scf7180000777459:13524-13777 - CCCTTAAAA------------------GTTGTCGACGTTCG-TTGCCGTTGTTGTTGCT-----GC----------------TGGCTGCGTTTTCGTATTG-GCATCGG-----------------TTTTTTT---------------------------------------------TTTG-------GGGTAC-----------------------------AT--TTAGTGTACATG-T--AAATC------------GACG-TGA-AAA-TCCGTAACCGATAAACGC---ATAAAGCC--------------AGATAAAGAAG-----------------------GG-------CAGCAG-------C----GAGATATAT--TGTTCCGCCAGATAGTTCT-AATTATACAA-------CCCAACTCG-------TAG-----ACGTA--TT----------------------CCCC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATACACACAA----CG-----------------------------C------------------------
droBia1 scf7180000302193:6600542-6600643 - GCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGCAG--ACGCACAGTGCTGCGACGGATATTTCT-AATTATACAA-------CCCAGGCGG-------TGGTAAAAACGTA--TT----------------------CCCC----------------------------------------------------------------------------------------------CGAA-CATCCGAAACTGGTTATACACAC--------------------------------------------------------------
droTak1 scf7180000415568:27816-27869 - GGCGGCCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGATGAAGATGACA---------------------------------ATGACAGCGACAACGACGAGGATGATGA
droEug1 scf7180000409215:17251-17525 + CCCTTAAAA------------------CTTGTCGACGTTCGGCTGTTGTTGTTGTTGCT-----GCTGCTGCTGCTTGCTGATGGCTGCATTTTCGTATTG-GCATCGG-----------------ATTTTTC---------------------------------------------TT---------GGGTACT----------------------------C--TTTGATGTACATA-T--AAATG------------TACG-TGC-AAA-TCCGGAACCGATAAACGCCTGA-AAAACCAA--CAAAAAGACTAGC------------------------------------------------------AGCAG--ACATATAGAGTTCCACCAGATATTTCT-AATTATACAA-------CCCAGGTCG-------TAGTAAAAACGTA--TT----------------------CCCC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATACACACAT----CG------------------------------------------------------
dm3 chr3L:7647377-7647458 - CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATTTCT-AATTATACAA-------CGCAGCCCG-------TAGCAAAAACGTATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATACACACAT----CG------------------------------------------------------
droSim2 node_68180:2165-2356 + AAGTGAAAA-------------------------------------------------------------------------------------------------------------------------------------ATCTAAAACAAAGCTAGCTGGACAAATCGATAAAAA--------------------------------------------------------------------------TCAACAAAGTACAGTGC-AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAAACAAGCTCT----------------------CAGCAGAGTTGGAAAAATTGATATTAAAAAAA------------AACTGAAACGGGAAGAATT-------------TCCC------------------TAAAGCA-ACGACAGCGGCAGCAACGACA---------------------------------GCGGCAGCGACGACAGCGGCAGCGACGA
droSec2 scaffold_138:52227-52408 - GATAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACAAAGTACAGTGC-AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAAACAAGCTCT----------------------CAGCAGAGTTGGAAAAATTGATATTAAAAAAAAAAAAAGAAGAAAACTGAAACGGGAAGAATT-------------TCCCTAAAGCAACAACAGCGGCAGC---A-ACGACAGCGGCAGCAACGACA---------------------------------GCGGCAGCGACGACAGCGGCAGCGACGA
droYak3 3L:8254019-8254107 - CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATTTCT-AATTATACAACATACAACCCAGGCCG-------TAGCAAAAACGTATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATACACACAT----CG------------------------------------------------------
droEre2 scaffold_4784:3689891-3689972 + CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATTTCT-AATTATACAA-------CCCAGGCCG-------TAGCAAAAACGTATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATACACACAT----CG------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAA----AA------------------TTTCTTA---TTCT-TC---GTC---GTTGTTGCTAT----------------------CGCA-TTTCGTATTG-A---------------------------------------------------------------------------------------------GCTGACAGAAGCCAAGAAG------CAGATGACAGATGCAAAAC-T-AAAATC------------TACG-TGC-AAA-TTTGT------GAAAT------------TC---------------------------------------ATTGAAGATTAAGATAACAAACGAATGCTG--------AGGCAT-----TGGTGCAAATAATTCT-AATTATACAACA----------GCCC-------AAC------TGTG--TT----------------------CCCC----------------------------------------------------------------------------------------------TCAAAGG-CCGAAACTGGTTATACACACA---------------------------------GCGACGACAACGACAGCGACGACGACGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................ATACAACA----------GCCC-------AAC------TGTG--TT----------------------............................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TAAGATAACAAACGAATGCT.........................................................................................................................................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
..............................................................AT----------------------CGCA-TTTCGTATTG-A---------------------------------------------------------------------------------------------GCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AAACGAATGCTG--------AGGCAT-----TGGT.................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
...........................................C---GTC---GTTGTTGCTAT----------------------CGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................CAGAAGCCAAGAAG------CAGATGACAGATGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------------CCCC----------------------------------------------------------------------------------------------TCAAAGG-CCGAAACTGGTTAT....................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
........................................................GTTGCTAT----------------------CGCA-TTTCGTATTG-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................GCTG--------AGGCAT-----TGGTGCAAA............................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AGATAACAAACGAATGCTG--------AGGCA...........................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................TAAGATAACAAACGAATGCTG--------AGGC............................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................TTCGTATTG-A---------------------------------------------------------------------------------------------GCTGACAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................AAAAC-T-AAAATC------------TACG-TGC-AAA-...........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AAACGAATGCTG--------AGGCAT-----TGGTGCA..............................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACAGCGACGACGACGA2120.501000000000000000000000000000001000000000000000000000000000000000
droMoj3
CAA----AA------------------TTTCT------T----C---GTC---GCTGTTGCTAT----------------------CGCA-TATCGTATTG-A---------------------------------------------------------------------------------------------GTTGACAGAAGCCAAGAAA------CAGATGACAGAT-CAGAAC-T-AAAATC------------TACG-TGC-AAA-TTTGT------GAAAT------------TC---------------------------------------ACTGAAGATAAAGATAACAAACGAATGTTG--------AGACAG-----TGGTGCAAATAATTCT-AATTATACAACA----------GTCC-------AAC------CGTG--TT----------------------CCCC----------------------------------------------------------------------------T-----------------CAAA-GA-ACGAAACTGGTTATACACACA---------------------------------GCGACGACAACGACAGCGACGACGACG-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAACTGGTTATACACACA---------------------------------GCGACG......................2711.001000001
droGri2
CAAACAAAAAAACAACAAAAAAGAAAACCTCA---GATACG-TT---GTCGTTGCTGCT-----GCTGTCG--------------TCGCA-TTTCGTATTG-A---------------------------------------------------------------------------------------------GCTGAAAGAAGCCAAGAAG--AAGTCAGATGACAGATGTAAAACCTAAAAATC------------GACG-TGTGAAA-TTTGT------GAAAT------------TC---------------------------------------TCGAAAGATAAAGATAACAAACGAATGCT------G--GGATAT-----TGGTGCAAACACTAGTAAATTATACAACA-------GCCCCCCAAAAAACAAC------TGGG--TTCCACC---CGCCCCATTCCC--CCCT----------------------------------------------------------------------------------------------TCAA-GA-ACGAAACTGGTTATACACACA---------------------------------GCAACGACAGCAAAAACAACGACAACAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
ATT--------------------------TTTTG--------------TT---GTT-TT-----GTTGTTG--------------TTGCA--TTCGTATTGGGCATCGGAAATCGACTGAAACTGA---A--------------------AAAAA-----------------------CTAG-------GGGCCC----------------------------GA--GCAGATGCAGAAG-T-CAAATC------------TACG-TGC-AAA-TTTGT------GAAAT------------TTAGCTA---------------GATAGCAATCGGAGCGGACACAGAAGATATAGAAAAG-------------------------------------AAAGAATTCT-AATTATACAACA----------GTCG-------TAC------AGCA--TTCCCCGAGCT---------------CC----------------------------------------------------------------------------------------------CCA---A-AAGAAACTGGTTATACTTACACACAACAGGCAAGGCAAGGCAAGGCAAGGCACAC---AGGCAGTGACAACGACAACGGCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................ATGCAGAAG-T-CAAATC------------TA......................................................................................................................................................................................................................................................................................................................................................................................................................1813.00310020
........................................................................................................................AACTGA---A--------------------AAAAA-----------------------CTAG-------GGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC------AGCA--TTCCCCGAGCT---------------CC----------------------------------------------------------------------------------------------C.........................................................................................2111.00100001
...............................................................................................................................................................................................GCCC----------------------------GA--GCAGATGCAGAAG-............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..................................................................................................................................................................................CTAG-------GGGCCC----------------------------GA--GCAGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.........................................................................................................................................................AA-----------------------CTAG-------GGGCCC----------------------------GA--GCAGATGCAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.........................................................................................................................................................AA-----------------------CTAG-------GGGCCC----------------------------GA--GCAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
......................................................................................................................................................................................................................................................................................................................................................................AAG-------------------------------------AAAGAATTCT-AATTATACAACA----------GT............................................................................................................................................................................................................................................2711.00100100
.............................TTTTG--------------TT---GTT-TT-----GTTGTTG--------------TTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2250.20101000
.............................TTTTG--------------TT---GTT-TT-----GTTGTTG--------------TT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.17100010
..............................TTTG--------------TT---GTT-TT-----GTTGTTG--------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.08100010
dp5
AAA---------------------------------------------T---------TGCTTT----------------------CGTA-TTTCGTATTG-GTACGAG-----------------TATCGTCGCACCAAGAAGCAAAAACAGCGACAGAGACACAGACACAGAGGCATA--GGCAGTG-------GCTGAGTGGAAGCAAGAAGTCGAGGCAGATGACCGATGCAGAAG-T-AAAATC------------TACG-TGC-AAA-TTC------GACAAAC------------AGAGCTAA--------------GATAGCAGT--------------------------------------TGGGGCAG--ATATAT-----TGCCGCAAACAGTTCT-AATTATACAACA----------GCCG-------TAG------TGTG--TTCCACGACCCCCCCCCCCCCCCCCTCC----------------------------------------------------------------------------------------------CGAA-GA-ACGAAACTGGTTATACACACA---------------------------------GCAACGA---------------CGACG-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................GCTAA--------------GATAGCAGT--------------------------------------TGGGGC....................................................................................................................................................................................................................................................................................................2014.0040400000000
..........................................................................................................................................................................................................................AGGCAGATGACCGATGCAGAAG-T-AA........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100000
..............................................................................................................................................................................................................................................................................................................AGAGCTAA--------------GATAGCAGT--------------------------------------TGGGGC....................................................................................................................................................................................................................................................................................................2311.0010010000000
.................................................................................................ATTG-GTACGAG-----------------TATCGTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
......................................................................................................................................................................................................................................GATGCAGAAG-T-AAAATC------------TACG-...................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................TGAGTGGAAGCAAGAAGTCGAGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACACACA---------------------------------GCAACGA---------------CGA...2111.0010100000000
..........................................................................................................................................................................CAGAGGCATA--GGCAGTG-------GCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................GAAGTCGAGGCAGATGACCGATGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
.................................................................................................................................................................................ATA--GGCAGTG-------GCTGAGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................CAG--ATATAT-----TGCCGCAAACAGTTCT-....................................................................................................................................................................................................................................................................2511.0010100000000
.........................................................................................................CGAG-----------------TATCGTCGCACCAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................GCAAGAAGTCGAGGCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000001
droPer2
AAA---------------------------------------------T---------TGCTTT----------------------CGTA-TTTCGTATTG-GTACGAG-----------------TATCGTCGCACCAAGAAGCAAAAACAGCGACAGAGACACAGACACAGAGGCATA--GGCAGTG-------GCTGAGTGGAAGCAAGAAGTCGAGGCAGATGACCGATGCAGAAG-T-AAAATC------------TACG-TGC-AAA-TTC------GACAAAC------------AGAGCTAA--------------GATAGCAGT--------------------------------------TGGGGCAG--ATATAT-----TGCCGCAAACAGTTCT-AATTATACAACA----------GCCG-------TAG------TGTG--TTCCACGACCCC--------CCCCCTCC----------------------------------------------------------------------------------------------CGAA-GA-ACGAAACTGGTTATACACACA---------------------------------GCAACGA---------------CGACG-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................TAA--------------GATAGCAGT--------------------------------------TGGGGC....................................................................................................................................................................................................................................................................................................1812.002200000
..........................................................................................................GAG-----------------TATCGTCGCACCAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................................................ATTG-GTACGAG-----------------TATCGTCGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................................................................................CAGATGACCGATGCAGAAG-............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......................................................................................................................................................................................................................GTCGAGGCAGATGACCGATGCAGAAG-............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.....................................................................................................................................................................AGACACAGAGGCATA--GGCAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................AAAAACAGCGACAGAGACACAGACACAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
droAna3
CGTGGAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAC------------GGATTCAAGAAGCCGAGC---------------------------------------------------TGAGGCCG--TGATAT-----TGGTAATATTGGTTCT-AATTATACAA-------CCA--GCCG-------TAG---------------------------------------C----------------------------------------------------------------------------------------------CGTA-AA-GCGAAACTGGTTATACACACA---------------------------------GCAGCAAAATCAGCAGAAGCAGCAGCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAAATCAGCAGAAGCAG......2112.002000002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGAAGCAGCAGC..1840.251010000
droBip1
CGTGGAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAAAAC------------GGATTCAAGAAGCCGAGC---------------------------------------------------TGAGGCCG--TGATAT-----TGGTAATATTGGTTCT-AATTATACAA-------CCA--GCCG-------TAG---------------------------------------C----------------------------------------------------------------------------------------------CGTA-AA-GCGAAACTGGTTATACACACA---------------------------------GCAGCAAAATCAGCAGAAGCAGCAGCAGSizeHit CountTotal NormTotal
No Reads
droKik1
TTG---------------------------------------------TT---GTTGCTGCCGT----------------------CGCA-TTTCGTATTG-GCATCGG-----------------TTTAGTT---------------------------------------------TT--AGCAGAT-------GTGGAGCGGAG-------GGTGAG-------------GTAAATG-T--AAATC------------CG--------AA-CCCAAATCCGATAAACGG---AG--------------AAACCGAGCTGA-GACA----------------------------------------------GGCAG--AGATATAGGGCCGCTGCAGACAGTTCT-AATTATACAA-------CCAGCGCCG-------TAC------CGTG--TT----------------------CCCC----------------------------------------------------------------------------------------------CGAA-GA-GCGAAACTGGTTATACACACAT----CA--------------------------GCAGCGA---------------CGTCG-SizeHit CountTotal NormTotal
No Reads
droFic1
CAA----AA------------------GTTGTCGACGTTCG-TT---GTTGTTGTTGCT-----GCC---------------TGGCTGCATTTTCGTATTG-GCATCGGTTTTTGGTTTTTTTTTT---TTTG---------------------------------------------T----------TGGTACT--------------------------------CTGATGTACGAA-C--AAAAC------------TACG-TTT-AAT-TCGGTGACCGATAAACGT---AGAGGAGC--------------AGCTAA-GACGG-------------------------------CAAACG-------C----GAGATATAT--AGTTCCGGCAGATAGTTCT-AATTATACAA-------CCCAGCCCG-------TAG-----ACGTA--TT----------------------CCCC----------------------------------------------------------------------------C-----------------CGAA-GATCCGAAACTGGTTATACACACAT----CG-----------------------------C------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAGCCAAAAT------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA-----------ACAAG-T--GGAAGAAATCTAAAATCTGCAATCC-AAAATCTAA------AAAAT------------TC-------------CTCTTAACAAG-----------------------TG-------G-------------------------------------AAAAAACCCG-AAGTCTGCAACA----------A-----------------------------------------------------------------------------------------------------------GAATTGCCCAAAAATTACTCCC------------------TAATAAG-ACAACAG------CAGCGGCA---------------------------------GCGATAACGGCAGCAGCAGCGACAACAGSizeHit CountTotal NormTotal
No Reads
droRho1
CCCTTAAAA------------------GTTGTCGACGTTCG-TTGCCGTTGTTGTTGCT-----GC----------------TGGCTGCGTTTTCGTATTG-GCATCGG-----------------TTTTTTT---------------------------------------------TTTG-------GGGTAC-----------------------------AT--TTAGTGTACATG-T--AAATC------------GACG-TGA-AAA-TCCGTAACCGATAAACGC---ATAAAGCC--------------AGATAAAGAAG-----------------------GG-------CAGCAG-------C----GAGATATAT--TGTTCCGCCAGATAGTTCT-AATTATACAA-------CCCAACTCG-------TAG-----ACGTA--TT----------------------CCCC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATACACACAA----CG-----------------------------C------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGCAG--ACGCACAGTGCTGCGACGGATATTTCT-AATTATACAA-------CCCAGGCGG-------TGGTAAAAACGTA--TT----------------------CCCC----------------------------------------------------------------------------------------------CGAA-CATCCGAAACTGGTTATACACAC--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGCGGCCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGATGAAGATGACA---------------------------------ATGACAGCGACAACGACGAGGATGATGASizeHit CountTotal NormTotal
No Reads
droEug1
CCCTTAAAA------------------CTTGTCGACGTTCGGCTGTTGTTGTTGTTGCT-----GCTGCTGCTGCTTGCTGATGGCTGCATTTTCGTATTG-GCATCGG-----------------ATTTTTC---------------------------------------------TT---------GGGTACT----------------------------C--TTTGATGTACATA-T--AAATG------------TACG-TGC-AAA-TCCGGAACCGATAAACGCCTGA-AAAACCAA--CAAAAAGACTAGC------------------------------------------------------AGCAG--ACATATAGAGTTCCACCAGATATTTCT-AATTATACAA-------CCCAGGTCG-------TAGTAAAAACGTA--TT----------------------CCCC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATACACACAT----CG------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATTTCT-AATTATACAA-------CGCAGCCCG-------TAGCAAAAACGTATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATACACACAT----CG------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................TATACAA-------CGCAGCCCG-------TAGCAAAAACG........................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGT.......................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAA-GATCCGAAACTGGTTATAC..................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGT.......................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------CGCAGCCCG-------TAGCAAAAAC.........................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGG........................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGT.......................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGT.......................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------CGCAGCCCG-------TAGCAAAAACGT.......................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAA-GATCCGAAACTGGTTATA...................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCG-------TAGCAAAAACGTATT....................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CCCG-------TAGCAAAAACGTATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-.....................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATACAC................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGTATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-.....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AATTATACAA-------CGCAGCCCA-------A..................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-GATCCGAAACTGGTTATACACA...............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAAAAACGTATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GA...................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-GATCCGAAACTGGTTATACACACA.............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAA-GATCCGAAACTGGTTATACACAC..............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTT......................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTCT-AATTATACAA-------CGCAGG.............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTA.....................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTG.........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGTATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCC................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGA..............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-GATCCGAAACTGGTTATAC..................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGT.......................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGT.......................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATAC..................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TACAA-------CGCAGCCCG-------TAGCAAAAACGT.......................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATA...................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................A-------CGCAGCCCG-------TAGCAAAAAC.........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-------CGCAGCCCG-------TAGCCC.............................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
droSim2
AAGTGAAAA-------------------------------------------------------------------------------------------------------------------------------------ATCTAAAACAAAGCTAGCTGGACAAATCGATAAAAA--------------------------------------------------------------------------TCAACAAAGTACAGTGC-AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAAACAAGCTCT----------------------CAGCAGAGTTGGAAAAATTGATATTAAAAAAA------------AACTGAAACGGGAAGAATT-------------TCCC------------------TAAAGCA-ACGACAGCGGCAGCAACGACA---------------------------------GCGGCAGCGACGACAGCGGCAGCGACGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAAAAAAA------------AACTGAAACGGGA...................................................................................................................................24114.001400000016331000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATTAAAAAAA------------AACTGAAACGGGA...................................................................................................................................2718.00800000014120000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATATTAAAAAAA------------AACTGAAACGGGA...................................................................................................................................2814.00400000003010000000
...............................................................................................................................................TCTAAAACAAAGCTAGCTGGACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300000000300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAA------------AACTGAAACGGGAAGAATT-------------................................................................................................................2712.00200000001010000000
...TGAAAA-------------------------------------------------------------------------------------------------------------------------------------ATCTAAAACAAAGCTAGCTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000001010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT----------------------CAGCAGAGTTGGAAAAATTGATA.....................................................................................................................................................................2612.00200000000200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATT-------------TCCC------------------TAAAGCA-ACGACAGCGGC.......................................................................2812.00200000011000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAAATTGATATTAAAAAAA------------AAC.............................................................................................................................................2612.00200000000011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAAAAATTGATA.....................................................................................................................................................................1611.00100000000001000000
...................................................................................................................................................AAACAAAGCTAGCTGGACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000010000000
.................................................................................................................................................TAAAACAAAGCTAGCTGGACAAATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT----------------------CAGCAGAGTTGGAAAAATTGATATT...................................................................................................................................................................2811.00100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------AACTGAAACGGGAAGAATT-------------T...............................................................................................................2311.00100000001000000000
............................................................................................................................................................................TAAAAA--------------------------------------------------------------------------TCAACAAAGTACAGTGC-AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------C................................................................................................................................................................................................................................2811.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTTGGAAAAATTGATATT...................................................................................................................................................................2111.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------TCCC------------------TAAAGCA-ACGACAGCGGC.......................................................................2311.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAA------------AACTGAAACGGGA...................................................................................................................................2111.00100000010000000000
................................................................................................................................................................TGGACAAATCGATAAAAA--------------------------------------------------------------------------TCAACAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA------------AACTGAAACGGGAAGAATT-------------T...............................................................................................................2511.00100000000100000000
..............................................................................................................................................................................................................................................................................AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAAACAAGCTCT----------------------CAGCAGA.....................................................................................................................................................................................2611.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAGTTGGAAAAATTGATATTAAAAA..............................................................................................................................................................2911.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAAACGGGAAGAATT-------------TCCC------------------TAAAGC....................................................................................2811.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATT-------------TCCC------------------TAAAGCA-ACGACAGCGGC.......................................................................2711.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA------------AACTGAAACGGGAAGAATT-------------T...............................................................................................................2411.00100000000000010000
................................................................................................................................................................TGGACAAATCGATAAAAA--------------------------------------------------------------------------TCAACAAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGGCAGCAACGACA---------------------------------GCGG........................2211.00100000000001000000
.................................................................................................................................................TAAAACAAAGCTAGCTGGACAAATCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...............................................................................................................................................TCTAAAACAAAGCTAGCTGGACAAATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA------------AACTGAAACGGGAAGAAT..............................................................................................................................2211.00100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAGTTGGAAAAATTGATATTAAAAAA.............................................................................................................................................................3011.00100000001000000000
.....................................................................................................................................................................................................................................................................TACAGTGC-AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCA..............................................................................................................................................................................................................................1511.00100000000001000000
...............................................................................................................................................TCTAAAACAAAGCTAGCTGGACAAATCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000010000
..........................................................................................................................................................................................................................................................................TGC-AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAAACAAGCTCT----------------------CAGCAGA.....................................................................................................................................................................................2911.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------CAGCAGAGTTGGAAAAATTGATA.....................................................................................................................................................................2411.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------CAGCAGAGTTGGAAAAATTGATAT....................................................................................................................................................................2511.00100000000100000000
................................................................................................................................................CTAAAACAAAGCTAGCTGGACAAATCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------CAGCAGAGTTGGAAAAATTGATATTA..................................................................................................................................................................2711.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTTGGAAAAATTGATATTAAAAAAA------------A...............................................................................................................................................2911.00100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------TCCC------------------TAAAGCA-ACGACAGCG.........................................................................2111.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAA------------AACTGAAACGGGAAGAATT-------------................................................................................................................2811.00100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT----------------------CAGCAGAGTTGGAAAAATTGATATT...................................................................................................................................................................2711.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------CAGCAGAGTTGGAAAAATTGAT......................................................................................................................................................................2311.00100000000000001000
........A-------------------------------------------------------------------------------------------------------------------------------------ATCTAAAACAAAGCTAGCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATATTAAAAAAA------------AACTGAAACGGGA...................................................................................................................................3011.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAGTTGGAAAAATTGATATTAAA................................................................................................................................................................2711.00100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------GCGGCAGCGACGACAGCGGCAGC.....2430.33100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGACGACAGCGGCAGCGA...2130.33100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACA---------------------------------GCGGCAGCGACGACAGCGG.........2540.25100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACAGCGGCAGCGACA.1970.14100000000001000000
droSec2
GATAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAACAAAGTACAGTGC-AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAAAACAAGCTCT----------------------CAGCAGAGTTGGAAAAATTGATATTAAAAAAAAAAAAAGAAGAAAACTGAAACGGGAAGAATT-------------TCCCTAAAGCAACAACAGCGGCAGC---A-ACGACAGCGGCAGCAACGACA---------------------------------GCGGCAGCGACGACAGCGGCAGCGACGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATTTCT-AATTATACAACATACAACCCAGGCCG-------TAGCAAAAACGTATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATACACACAT----CG------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTATACAACATACAACCCAGGCCG-------TAGC...............................................................................................................................................................................................................................2811.00101000000000
droEre2
CG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATTTCT-AATTATACAA-------CCCAGGCCG-------TAGCAAAAACGTATTTT----------------------CACC----------------------------------------------------------------------------------------------CGAA-GATCCGAAACTGGTTATACACACAT----CG------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTATACAA-------CCCAGGCCG-------TAGCA..............................................................................................................................................................................................................................2211.0011000000

Generated: 05/16/2015 at 08:30 PM