ID:

dvi_20639

 Coordinate:

scaffold_13049:19324062-19324269 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.3 -28.3 -28.3

Flybase annnotation

CDS [Dvir\GJ11489-cds]; exon [dvir_GLEANR_11524:3]; exon [dvir_GLEANR_11524:2]; CDS [Dvir\GJ11489-cds]; intron [Dvir\GJ11489-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCAGCAACAGCAGCAGCAGCAACAAAAGCCCCAGCAGCAGCCAAAACAAAGTAAGGTTCAGCAATCATTTAATGCAAGCAACACACGAAAAGCCATTAAATAATTTCAAACAGAAATATTTGCCACTTGGGCTTACATGTTATTTGAAGTTATTTCTTGCGCCACACTTACATCTACACACACACACACATACATACACACAGCTAATATATGAACATATATGCACGTTCCCGTCTATATGTAAAGTTTCCGTTTTAGATATGCTAGCGAGCGCTTCGCGTTCGACAACGCCTATTAGCCTCATTATC
**************************************************((((((((..(((.........))).)))............((((..(((((((((((((...........(((.....)))..........)))))))))))))..)).))....)))))................................((((.((..(((((((((((.(((....))).)))))))...))))..)).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060686
Argx9_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060685
9xArg_0-2h_embryos_total
 SRR060660
Argentina_ovaries_total
 SRR060665
9_females_carcasses_total
 SRR060676
9xArg_ovaries_total
 SRR060677
Argx9_ovaries_total
 M027
male body		 SRR060687
9_0-2h_embryos_total
 M061
embryo
 SRR060656
9x160_ovaries_total
 SRR060658
140_ovaries_total
 SRR060661
160x9_0-2h_embryos_total
 SRR060663
160_0-2h_embryos_total
 SRR060664
9_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060682
9x140_0-2h_embryos_total
 V047
embryo
 V053
head
 SRR060684
140x9_0-2h_embryos_total
 SRR060678
9x140_testes_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
..................................................................................................................................................................................................................................................................ATATGCTAGCGAGCGCTTCGCGTT.......................... 24 0 1 3.00 3 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GCGCTTCGCGTTCGACAACGCCT............... 23 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................GTTTTAGATATGCTAGCG....................................... 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GATATGCTAGCGAGCGCTTCG.............................. 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTTCCCGTCTATATGTAAA............................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GCTAGCGAGCGCTTCGCGTTCGACAAC................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AGATATGCTAGCGAGCGCTTCGCGTTC......................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AGATATGCTAGCGAGCGCTTCG.............................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GCGCTTCGCGTTCGACACCGC................. 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CCGTCTATATGTAAAGTTTCCGTTTTAG.................................................. 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................ATATGCTAGCGAGCGCTTCG.............................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................CCCCAGCAGCAGCCAAAACA.................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GCTAGCGAGCGCTTCGCGTT.......................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GCAACAAAAGCCCCAGC................................................................................................................................................................................................................................................................................. 17 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GCGCTTCGCGTTCGACAAC................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................GATATGCTAGCGAGCGCTTCGCGTT.......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTTCCCGTCTATATGTAAAAA............................................................. 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GCGCTTCGCGTTCGACAACGC................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................AAAAGCCCCAGCAGCAGCC.......................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AAAGCCCCAGCAGCAGCCAAA....................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................TTTAGATATGCTAGCGAG..................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................CAACAAAAGCCCCAGCAGC.............................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................GCTTCGCGTTCGACAACGCCTATTAGCCT....... 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................GCTTCGCGTTCGACAACG.................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................CAACAAAAGCCCCAGCAGCA............................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................ATGCTAGCGAGCGCTTCGCGTTC......................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AGATATGCTAGCGAGCGCTTCGCGTT.......................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................GCAACAAAAGCCCCAGCAGCAGCCAA........................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GCGCTTCGCGTTCGACAACGCCTATTAGC......... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AAAGCCCCAGCAGCAGCCAAAACA.................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................GTTCGACAACGCCTATTAGC......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TAGCAACAAAAGCCCCAGCA................................................................................................................................................................................................................................................................................ 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................GTTTTAGATATGCCAGCGA...................................... 19 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................CCCCAGAAGTAGCCAAAAC..................................................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CAGCCATCATTTAAAGAAAGC..................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................AGCCATCATTTAAAGAAAGC..................................................................................................................................................................................................................................... 20 3 19 0.11 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....AACAGCAGCAGCAGCAACAAA.......................................................................................................................................................................................................................................................................................... 21 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
TCAGCAACAGCAGCAGCAGCAACA............................................................................................................................................................................................................................................................................................ 24 0 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
TCAGCAACAGCAGCAGCAGCA............................................................................................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGTCGTTGTCGTCGTCGTCGTTGTTTTCGGGGTCGTCGTCGGTTTTGTTTCATTCCAAGTCGTTAGTAAATTACGTTCGTTGTGTGCTTTTCGGTAATTTATTAAAGTTTGTCTTTATAAACGGTGAACCCGAATGTACAATAAACTTCAATAAAGAACGCGGTGTGAATGTAGATGTGTGTGTGTGTGTATGTATGTGTGTCGATTATATACTTGTATATACGTGCAAGGGCAGATATACATTTCAAAGGCAAAATCTATACGATCGCTCGCGAAGCGCAAGCTGTTGCGGATAATCGGAGTAATAG
**************************************************((((((((..(((.........))).)))............((((..(((((((((((((...........(((.....)))..........)))))))))))))..)).))....)))))................................((((.((..(((((((((((.(((....))).)))))))...))))..)).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR060686
Argx9_0-2h_embryos_total
 SRR060672
9x160_females_carcasses_total
 SRR060658
140_ovaries_total
 SRR060663
160_0-2h_embryos_total
 GSM1528803
follicle cells		 SRR060683
160_testes_total
 SRR060687
9_0-2h_embryos_total
 V047
embryo
 SRR060659
Argentina_testes_total
 SRR060670
9_testes_total
 SRR060674
9x140_ovaries_total
 SRR060675
140x9_ovaries_total
 V116
male body
......................................................................................................................................................................................................................................................................CGATCGGTCGCGAAGCTCAA.......................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGCAAGTGCAGATATACATTT............................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TGTAGATGTGTGTATGTGTGTAT.................................................................................................................... 23 1 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAGAACGGGGTTTGAAGGTAG...................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GTGTGTGTGTGTGTATGTATG............................................................................................................... 21 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................GAACCCGAATGAACAAAAA.................................................................................................................................................................... 19 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0
AGTCGTTGTCGTCGTCGTCGTTG............................................................................................................................................................................................................................................................................................. 23 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGTCGATTATATTGTTGTA.......................................................................................... 19 2 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................TGTGTGTGTGTGTATGTATGT.............................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ATGTGTGTGTGTGTGTATGT.................................................................................................................. 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................TGTGTGTGTGTGTATGTATG............................................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................TGTGTGTGTATGTATGTGTGT.......................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................TTAGTAAACTACGTACATTG.................................................................................................................................................................................................................................. 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ATGTGTGTGTGTGTGTAT.................................................................................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................GTTGGTACATCACGTTCGT.................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGTGTGTATGTATGTGTGT.......................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:19324012-19324319 - dvi_20639 TCAGCAACAGCAGCAGCA-GCAAC---AA---------AAGCCCCAGCAGC-AGCCAAAAC--A---AA---------GTAAG----------------GTTCAGCAA--------TCATTTA-ATG-----------------------------------------------------------------------------------------------------------------------------------------------CAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACACG---------------------------------------------------------------------------------------------------------------------------------------AAAAGCCATTAAATAATTTCAAACAGAAAT--ATTTGCCACTTGGGCTTACATGTTATTTGAAGTTATTTCTTGCGCCACACTTACATCTA----CACACACACAC------ACATAC--------------------------------------------------ATACACACAGC--TAATA-----------------------------------------------------------------------------------------------------------------------------------------TATGAACA---------------------------TATATGCACG---------TTCCCGTCTATATG---------TAAAGTTTC--CGTTTTAGATATGCTAGCGAGCGCT-----TCGCGTTCG----------ACAACGCCTATTAGCCTCATTATC
droMoj3 scaffold_6680:7058009-7058272 - dmo_2395 TCAGCAGCAGCAGCAA-------C---AAAAGCC---------TCAGCAGC-AGCCAAAAC--------------AAAGTAAGTT----------GAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACAACATAAAAATTACTCTCACACCTACACTCCTA----------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTACACCTAAACACACACACACAC----ACACACACAC---ACACACAC--------ATACACACACACATACACATCATTAATCTGCA----------------TACATGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTC-------TTCCTGTCTATATG---------TAAAGTTTC--TGTTTTAGATATGCTAGCGAGCGCT-----TCGCGTTCG----------ACCACGCCTATTAGCCTCATCATC
droGri2 scaffold_15110:17009109-17009345 - TCAGCAGCAACAACAGCA-GCAGCAACAGAAGCC---------TCAGCAGC-AGCCAAAAC--------------CAAGTAAGAG-------------------------------------AATTGCAA---------------------------------------------------------------------ATTTCATCAATTTATTTGTTGATCACACACTGAGACA----------------------------------CAAGACACGAAATACCAATAATACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------TA---------------T--A-----TTTGTG-----C----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCTTTCTCCGTATCTCTCTATATG---------CATAGTTTC--CGTTTTAGATATGCTTGCGAGCGCT-----TCACGTTCG----------ACAACGCCTATTAGCCTCATTATC
droWil2 scf2_1100000004729:1593419-1593778 - dwi_1923 TAATCAACAACAACAGCA-GCAAA---AG---------CCACCCCAGCAGC-AGCAACAGC--A---GAAACAACCGAGTGAGTATTGAGGAGAT-----CCTATTTT-------T----TT-A-GTT-------------------------TTATTTTC---------TCTTTA-------------AAATCAGGAAATGCAACCG-----------------------------AACATGAAC-------------------------------------------------------------------ATCGGTGTCTACCCTTCTATTGCCTAGTTGG-----TTGCAT-------------------------------------------------TCCCTGTTCA---------------------------------------------------------------------------------AAAATCACA-CACACACAAC-------------------------------------------------------------------------------------CACCCA---------------------------------------------------GACACTCACAC----------------------------------------------------------------------------------------------------------GCACCCACAC---ACACACACGATTTCTAATAAACACTGCCCTATACATCATA--------------------------TATATGCGT-----CTCTG---------------------------------------------------------------------CGC-----------------------------------------------------------------------------------------------------CGTCTATATG---------TGTAGTATC--TGTTTTAGATATGCTTGCCGGCGCC-----TCGCGATCC----------ACGACGCCCATCAGTCTGATTGTG
dp5 XR_group6:3292600-3292916 + TCAGCAACAGCAGCAGTC-AAA---------GCC---------CCAGCAGC-AGCAGAAGC-----------AATCAAGTAAGTT----------ATCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTAAACGTTCGGAATG------------CCTTTTGGCCATTTGGCCTTTCTGCATGCATGCCCAATGTTTATTAAATGCGGAATTCAGATTGTGGATAGCTTCAAGCGGGTATCCACTTGTGCTGTTCGCTTCCCATGTAAAATTCAAACATC-------------AAC---------------------------------------------------------------------------------------------TAAC---ACA------------------CACTG----------------CCTGCA----------------CATGTACTCGT-----CTC-----------------------------------------------------------------------GGTG-----------------------------------------------------------------------------------------------------GTCTATATG---------TGAAGTTTC--CGTTTTAGACATGCTTGCCGGCGCC-----TCACGATCG----------ACGACGCCCATTAGCCTGATCGTC
droPer2 scaffold_9:1589581-1589885 + TCAGCAACAGCAGCAGTC-AAA---------GCC---------CCAGCAGC-AGCAGAAGC-----------AATCAAGTAAGTT----------ATCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTAAACGTTCGGAATG------------CCTTTTGG------------TCTGCATGCATGCCCAATGTTTATTAAATGCGGAATTCAGATTGTGGCTAGCTTCAAGCGGGTATCCACTTGTGCTGTTCGCTTCCCATGTAAAATTCAAACATC-------------AAC---------------------------------------------------------------------------------------------TAAC---ACA------------------CACTG----------------CCTGCA----------------CATGTACTCGT-----CTC-----------------------------------------------------------------------GGTG-----------------------------------------------------------------------------------------------------GTCTATATG---------TGAAGTTTC--CGTTTTAGACATGCTTGCCGGCGCC-----TCACGATCG----------ACGACGCCCATTAGCCTGATCGTC
droAna3 scaffold_13337:12558788-12559017 + TCAACAGCAGCAG---AA-------------GCCCCAGCAGCAAAAAC------------------------AGCCAAGTGAGTA--GCAGAGTC----CCTCATCAT------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTCCACCTTCTGGCATA------------CATTTTTG----------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAA-CTCATCCA-----TGA---------------------------------------A------------------TATCT----------------CCTGCATGTGATATGTG----TCTTGTC-----CTCGTT---GCGTC-----------------------------------------------------------------CGTC-----------------------------------------------------------------------------------------------------CTTTAAATG---------TTCAGTTTC--CGTTTTAGACATGCTGGCCGGAGCC-----TCCCGTTCC----------ACAACGCCCATCAGCCTGATTATC
droBip1 scf7180000396589:1429245-1429471 - TCAACAGCAGCAG---AA-------------GCCCCAACAGCAAAAAC------------------------AGCCAAGTAAGTGAAGCT-AGAC----ACCTATCAT--------T----A-GTTTCTGG----------------------------------TTGTCT-TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTAAAAAATC-------------AAC---------------------------------------------------------------------------------------------AAATTTTAAA------------------TATTT----------------CCTGCATGTTTTAT--G----TCGTGTC-----CTCGTT---GCTTC-----------------------------------------------------------------CGTC-----------------------------------------------------------------------------------------------------CTTTACATG---------TTCAGTTTC--CGTTTTAGACATGCTGGCCGGAGCC-----TCCCGTTCC----------ACAACGCCCATCAGCCTGATCATC
droKik1 scf7180000302272:118446-118789 + CCAGCAGCAGCAG---AA-------------GCC---------CCAGCAGA-AGC-----------------AGCCAAGTGAGTTTTG----------------TTTC-------T----TT-T-ATC-------------------------TTATTTAT---------TTTTTA-------TATTATTTAA-----------------------------------------------------------------------------TAA-------------------------------------------GGAATCTAATCTTAATTTTCCTAACTTAAGGTCTTTCTT-------------------------------------------------ATCTTGTTCTTGCAAACATATTTTTATACTAAGTAATAATTTCCAAATTTTTATTTTAAAAGCTA-TAATTTCGTAA----------------AAATGTATCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-------------AAA-----------------------------------------TAATA-CTTACCTG-----TGA--------------------------------------------------------------------------------TTGCACGCATTAT--T---------TTTTCTTCTCGTT---GCGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTATATGTG---------TATAGTTTC--CGTTCTAGACATGCTGGCCGGAGCC-----TCGCGTTCC----------ACGACGCCCATCAGCCTGATTGTC
droFic1 scf7180000454073:1958186-1958452 - ACAGCAACAGCAGCAGCA-GCAAC---AA---------CAGCAGCAGCAAC-AGCAACAGC--A---GC---------AGCAG----------------CAGCAACAT--------C-----AATCGCAGC----------------------------------TCGCCC-CTTACTATCTACCGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAGCCGCTGGG-------------AAC-------GGATT----------------------------------TCTCGCGCA-----CCA------------------------------CC--------------------------------------------------ACGCGCACCAC--CATCA-----------------------------------------------------------------------------------------------------------------------------------------CCC----------CGCCGCCGCAGCCGCTGCCGCCTATGGGAATG---------CTGCCGCCTATGGGAATGGACTACAACATGCT--GGCTTTGGATATGCCCAT----GCCCATGCCCA----CG------C----TCATGCACAGCAGTATGCT--GC
droEle1 scf7180000491255:2474442-2474733 - -CAGCAACAACAGCAGCA-GCAAC---AA---------CAACAACAGCAGC-AGCAACAAC--A---AC---------AACAG----------------CAGCAGCAA--------CAAC--AACAGCAG--------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAAC---------------AACAGCAGCAGCAACAACAGCA---GCAACA-------------------------ACAAGTCTTGGCTCAGCAACAACCTCAACCTGGACAACAAGTCATAACCCAGCGGCACGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTAACACATCCACAGCCCAAGGTCAACAAAT---------------CATTCAGAGCCATATGTCTTTGGCCTTGCAAAAACAGCAGCAAATGTTGCACGTCCAACAACAAACGCA-------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCCGCAACAAC
droRho1 scf7180000760202:72001-72272 + -CAACAACAGCAGCAACA-GCAAC---AA---------CAACAACAGCAGC-TGCAACAAC--A---AC---------ATCAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGCACAGCAACAACCTCAGCCTGGACAACAAGTCATCACCCAGCGCCACGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAACACATCTACGGCCCAAGGACAACAAAT---------------CATTCAGAGCCATATGTCTTTAGCTTTGCAGAAACAGCAGCAAATGTTGCACGTTCAACAGCAAACACAACAGCAGCCGCAACAGCAACAACAGCTTC-------------------------------------------------------------------CTC----A-GGCA----CAGCAACAG--------------------CTTTCCCAGGCACC
droBia1 scf7180000302408:321062-321176 - -CAGCAACAGCAGCAGGA-GCAGC---AG---------CAACATTAGCAGC-AGCCACAGC--GGTAAC---------GGCAG----------------CAACATCAGCAC---------TTAAATGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAG---------------------------------------------------AAAAATCAGCTGAA-------------AAC---------------------------------------------------------------------------------------------TGGC---AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAA
droTak1 scf7180000415417:687780-687905 - -CAGCAACAACAGCAGCA-GCAAC---AA---------CAACAAAAGCAATTAGAAACAAC--A---AC---------AAAG-----------------GCCCGGCAA--------CGATTTA-GAG-----------------------------------------------------------------------------------------------------------------------------------------------CGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAAAATGAAACAAA-------------AACCAGAAACGAATTTTCCACTC-------------------------------------------------------------------------AAAT---TTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT
droEug1 scf7180000409467:150414-150736 - TCATCATCAGCAGCAGCAAGCAGC---AG---------CAGCAGCAGCAGC-ATCATCAACTCTGCAAC---------AGCAG----------------CAACATCAAGTC---------ATAACAGCAACATTAAGCCACAGCAGCAACATC--------GACTGTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTGGATG------------CCACTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCACCCATTACACA-----TGCATTTG----CCCAACCCCTCAAGACAATTTATCC---ACCTCCACCACACCCCTTGGGCAA------------------------TGCAAGTTGTG----TCTCGTC--------------GGC---------------------------GACATTTTAAATTAAAAATTTCCATGCAATTTCATGTCTCGGTGGCCTTACAGTT---------------------------------------------------------------------------------------------------------------------------------------GGGCAAGCA-----CTGCATTCG----------GTCCAATCAATTAGCTTGAACGT-
dm3 chrX:19438609-19438809 - -CAGCAGCAGCAGCAGCA-GCAAC---AA---------CAACAGCAGCAGC-AACAGCAGC--A---G--------------------------------TCCGGCGG--------TAAT--AATCCCAGC-------AACGGCAGCAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTCGCCTTGT---------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------CCTTGCCCATCCG----CACGCCCACGC-------CAGCC--------------------------------------------------ACGCGCACAGC--AGCCA-----------------------------------------------------------------------------------------------------------------------------------------CGCCCACG------------GCAGTCAC----------------G--------------------------------------------------------CCC----ACGCCC----TAGCGATAGCCCACGGTCATCACGGTCTGC-----------TG
droSim2 3l:13690922-13691048 - -CAACAGCAGCAGCAGCA-GAGAC---AA---------ATTCAGCAGCAGC-TGCAACAAA--A---TA---------TGCAG----------------CAGCAGCAA--------CAAT--TACAGATG--------------------------------------------------------------------------------------------------------------------------------------------CAAATGCAGC---------------AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAGAATCTACAGCAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTCGCC--------------------AC
droSec2 scaffold_44:20864-21144 - TCAACAACAACAACAGCA-GCAGC---AG---------CAGCAGCAGCAGC-AGCAACAAC--A---AC---------AGCAG----------------CAGCAGCAA--------CA-----TATG----------------------------------GACTATGTGA-CTGAGCTGCTAAGCAAAGGAGCGGAGAATGTGGGCGGCATGAATGGCAATCATCTGCTGAACTTCAACCTGGACATGGCGGCGGCCTACCAGCAGAAGCATCCACAGC---------------AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAG--------------C---------------------------------------------------------------------------------------------AGGC---GCA-------------------------------------------------CAAC--A------ATGGC-----TTCAAT---GTGGC-----------------------------------------------------------------CGAT-----------------------------------------------------------------------------------------------------TTCGGCATG---------GCCGGATTCGATGGTTTAAATATGA-------------------------------------------CAGCAGCCTCATT-CC
droYak3 X:11898447-11898673 + -CAGCAACAGCAGCAGCA-GCAGC---AA---------CAACAGCAGCAAC-AGCAGCAGC--A---AC---------AGCAG----------------CAGCAGCAGTCCGGCGGCAAT--AATCCCAGC-------AACGGCAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCCGCCCTGT---------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------CCTCGCCCATCCG----CACGCCCACGC-------CAGCC--------------------------------------------------ACGCCCACAGC--AGTCA-----------------------------------------------------------------------------------------------------------------------------------------CGCCCACA------------GCAGCCAC----------------G--------------------------------------------------------CCC----ACGCCC----TAGCGATAGCCCACGGTCATCACGGCCTGCTGCCGTCGGTGGT
droEre2 scaffold_4690:9676738-9676956 - -CAGCAGCAGCAACAACA-ACAAC---AA---------GAACAGCAGCAGC-AACGGGAAC--A---A------------CAG----------------CAACAGGATAAC---------AAAGGAG-----------------------------------------------------------------------------------------------------------------------------------------------CAGAGAATAGAATATAAAAAATACA-------------------------------------------------------------------------------------------------------------------------------AAATACAAAAATAAGCAAGAAGGACGAAGGTCGAA-GCAGGAAGCAAGTAGAGACGGAATTTGTTATCATCTTGAAAACGCG-CACACGCA------------------------------------------------------------------------------------------------------------------------------------------------------CACACATA-------------GAC-------------------------------------------------------------------------ACACACACAC------ACACACGC---ACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
TCAGCAACAGCAGCAGCA-GCAAC---AA---------AAGCCCCAGCAGC-AGCCAAAAC--A---AA---------GTAAG----------------GTTCAGCAA--------TCATTTA-ATG-----------------------------------------------------------------------------------------------------------------------------------------------CAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACACG---------------------------------------------------------------------------------------------------------------------------------------AAAAGCCATTAAATAATTTCAAACAGAAAT--ATTTGCCACTTGGGCTTACATGTTATTTGAAGTTATTTCTTGCGCCACACTTACATCTA----CACACACACAC------ACATAC--------------------------------------------------ATACACACAGC--TAATA-----------------------------------------------------------------------------------------------------------------------------------------TATGAACA---------------------------TATATGCACG---------TTCCCGTCTATATG---------TAAAGTTTC--CGTTTTAGATATGCTAGCGAGCGCT-----TCGCGTTCG----------ACAACGCCTATTAGCCTCATTATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTAGCGAGCGCT-----TCGCGTT....................................2413.003000000000000000000000000000000001000000000000000000000000000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCT-----TCGCGTTCG----------ACAACGCCT...............2312.002000000000000000000000000000000000000100000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGATATGCTAGCG......................................................1812.002000000000020000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCTAGCGAGCGCT-----TCG........................................2112.002000000000000000000000001100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------TTCCCGTCTATATG---------TAAA................................................................................1911.001000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGCGAGCGCT-----TCGCGTTCG----------ACAAC...................2711.001000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATATGCTAGCGAGCGCT-----TCGCGTTC...................................2711.001000000000001000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATATGCTAGCGAGCGCT-----TCG........................................2211.001000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTCTATATG---------TAAAGTTTC--CGTTTTAG.................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCTAGCGAGCGCT-----TCG........................................2011.001000000100000000000000000000000000000000000000000000000000000000
.........................................CCCCAGCAGC-AGCCAAAAC--A---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGCGAGCGCT-----TCGCGTT....................................2011.001000000000000000000000000000000000000100000000000000000000000000
...................GCAAC---AA---------AAGCCCCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1721.002000000000000000000000000000000000000000000000000000000000000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCT-----TCGCGTTCG----------ACAAC...................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCTAGCGAGCGCT-----TCGCGTT....................................2511.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------TTCCCGTCTATATG---------TAAAAA..............................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCT-----TCGCGTTCG----------ACAACGC.................2111.001000000000000000000000000000000000000100000000000000000000000000
...........................AA---------AAGCCCCAGCAGC-AGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
............................A---------AAGCCCCAGCAGC-AGCCAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGATATGCTAGCGAG....................................................1811.001000000000000000000000000000000000000000000000000000000000000100
....................CAAC---AA---------AAGCCCCAGCAGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT-----TCGCGTTCG----------ACAACGCCTATTAGCCT.......2911.001000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT-----TCGCGTTCG----------ACAACG..................1811.001100000000000000000000000000000000000000000000000000000000000000
....................CAAC---AA---------AAGCCCCAGCAGC-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTAGCGAGCGCT-----TCGCGTTC...................................2311.001000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATATGCTAGCGAGCGCT-----TCGCGTT....................................2611.001000000000000000000000000000000000000100000000000000000000000000
...................GCAAC---AA---------AAGCCCCAGCAGC-AGCCAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCT-----TCGCGTTCG----------ACAACGCCTATTAGC.........2911.001001000000000000000000000000000000000000000000000000000000000000
............................A---------AAGCCCCAGCAGC-AGCCAAAAC--A---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCG----------ACAACGCCTATTAGC.........2011.001001000000000000000000000000000000000000000000000000000000000000
.....AACAGCAGCAGCA-GCAAC---AA---------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.091000000000000000000000000000000000010000000000000000000000000000
TCAGCAACAGCAGCAGCA-GCAAC---A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24120.081000000000000000000000000000001000000000000000000000000000000000
TCAGCAACAGCAGCAGCA-GCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCAGCAGCAGCAGCAA-------C---AAAAGCC---------TCAGCAGC-AGCCAAAAC--------------AAAGTAAGTT----------GAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACACAACATAAAAATTACTCTCACACCTACACTCCTA----------------CA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTACACCTAAACACACACACACAC----ACACACACAC---ACACACAC--------ATACACACACACATACACATCATTAATCTGCA----------------TACATGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTC-------TTCCTGTCTATATG---------TAAAGTTTC--TGTTTTAGATATGCTAGCGAGCGCT-----TCGCGTTCG----------ACCACGCCTATTAGCCTCATCATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCT-----TCGCGTTCG----------ACCACGCCT...............2312.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCT-----TCGCGTTCG----------ACCAC...................2011.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCT-----TCGCGTTCG----------ACCACGCCT...............2511.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCG----------ACCACGCCTATTAGCCT.......2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCT-----TCGCGTTCG----------ACCACGCC................2211.001001000
.............CAA-------C---AAAAGCC---------TCAGCAGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTGTCTATATG---------TAAAG...............................................................................1911.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC----ACACACACAC---ACACACAC--------A........................................................................................................................................................................................................................................................................................................................................................22200.051000010
droGri2
TCAGCAGCAACAACAGCA-GCAGCAACAGAAGCC---------TCAGCAGC-AGCCAAAAC--------------CAAGTAAGAG-------------------------------------AATTGCAA---------------------------------------------------------------------ATTTCATCAATTTATTTGTTGATCACACACTGAGACA----------------------------------CAAGACACGAAATACCAATAATACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------------TA---------------T--A-----TTTGTG-----C----------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTCTTTCTCCGTATCTCTCTATATG---------CATAGTTTC--CGTTTTAGATATGCTTGCGAGCGCT-----TCACGTTCG----------ACAACGCCTATTAGCCTCATTATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droWil2
TAATCAACAACAACAGCA-GCAAA---AG---------CCACCCCAGCAGC-AGCAACAGC--A---GAAACAACCGAGTGAGTATTGAGGAGAT-----CCTATTTT-------T----TT-A-GTT-------------------------TTATTTTC---------TCTTTA-------------AAATCAGGAAATGCAACCG-----------------------------AACATGAAC-------------------------------------------------------------------ATCGGTGTCTACCCTTCTATTGCCTAGTTGG-----TTGCAT-------------------------------------------------TCCCTGTTCA---------------------------------------------------------------------------------AAAATCACA-CACACACAAC-------------------------------------------------------------------------------------CACCCA---------------------------------------------------GACACTCACAC----------------------------------------------------------------------------------------------------------GCACCCACAC---ACACACACGATTTCTAATAAACACTGCCCTATACATCATA--------------------------TATATGCGT-----CTCTG---------------------------------------------------------------------CGC-----------------------------------------------------------------------------------------------------CGTCTATATG---------TGTAGTATC--TGTTTTAGATATGCTTGCCGGCGCC-----TCGCGATCC----------ACGACGCCCATCAGTCTGATTGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTGCCGGCGCC-----TCGCGATCC----------........................2411.00100010
.AATCAACAACAACAGCA-GCAAA---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
............ACAGCA-GCAAA---AG---------CCACCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
......ACAACAACAGCA-GCAAA---AG---------CCACCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001
...........................................CCAGCAGC-AGCAACAGC--A---GA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.33100010
dp5
TCAGCAACAGCAGCAGTC-AAA---------GCC---------CCAGCAGC-AGCAGAAGC-----------AATCAAGTAAGTT----------ATCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTAAACGTTCGGAATG------------CCTTTTGGCCATTTGGCCTTTCTGCATGCATGCCCAATGTTTATTAAATGCGGAATTCAGATTGTGGATAGCTTCAAGCGGGTATCCACTTGTGCTGTTCGCTTCCCATGTAAAATTCAAACATC-------------AAC---------------------------------------------------------------------------------------------TAAC---ACA------------------CACTG----------------CCTGCA----------------CATGTACTCGT-----CTC-----------------------------------------------------------------------GGTG-----------------------------------------------------------------------------------------------------GTCTATATG---------TGAAGTTTC--CGTTTTAGACATGCTTGCCGGCGCC-----TCACGATCG----------ACGACGCCCATTAGCCTGATCGTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................CC---------CCAGCAGC-AGCAGAAGC-----------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG----------ACGACGCCCATTAGCCTG......2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCG----------ACGACGCCCATTAGCCTGATC...2511.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAATGCGGAATTCAGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCA----------------CATGTACTCGT-----CTC-----------------------------------------------------------------------GGTG-----------------------------------------------------------------------------------------------------GC....................................................................................................2511.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCC-----TCACGATCG----------ACGA....................1911.0010100000000
....................AA---------GCC---------CCAGCAGC-AGCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1921.0020000200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-------------AAC---------------------------------------------------------------------------------------------TAAC---ACA------------------CACTG----------------CCT............................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGACATGCTTGCCGG....................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGACATGCTTGCCGGC...................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGACATGCTTGCCGGCGC.................................................2311.0010010000000
.....................A---------GCC---------CCAGCAGC-AGCAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG-----------------------------------------------------------------------------------------------------GTCTATATG---------TGAAGAAA............................................................................2090.1110100000000
droPer2
TCAGCAACAGCAGCAGTC-AAA---------GCC---------CCAGCAGC-AGCAGAAGC-----------AATCAAGTAAGTT----------ATCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTAAACGTTCGGAATG------------CCTTTTGG------------TCTGCATGCATGCCCAATGTTTATTAAATGCGGAATTCAGATTGTGGCTAGCTTCAAGCGGGTATCCACTTGTGCTGTTCGCTTCCCATGTAAAATTCAAACATC-------------AAC---------------------------------------------------------------------------------------------TAAC---ACA------------------CACTG----------------CCTGCA----------------CATGTACTCGT-----CTC-----------------------------------------------------------------------GGTG-----------------------------------------------------------------------------------------------------GTCTATATG---------TGAAGTTTC--CGTTTTAGACATGCTTGCCGGCGCC-----TCACGATCG----------ACGACGCCCATTAGCCTGATCGTCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGATCG----------ACGACGCCC...............1814.004400000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-------------AAC---------------------------------------------------------------------------------------------TAAC---ACA------------------CACTG----------------CCTG...........................................................................................................................................................................................................................................................................................................................2214.004400000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGATCG----------ACGACGCCCATTAGCC........2511.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----------ACGACGCCCATTAGCCTGATCGT.2511.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAGACATGCTTGCCGG....................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCATTAGCCTGATCGT.1811.001100000
....CAACAGCAGCAGTC-AAA---------GCC---------CCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGATCG----------ACGACGCCCATTAGCCT.......2611.001100000
droAna3
TCAACAGCAGCAG---AA-------------GCCCCAGCAGCAAAAAC------------------------AGCCAAGTGAGTA--GCAGAGTC----CCTCATCAT------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTCCACCTTCTGGCATA------------CATTTTTG----------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAA-CTCATCCA-----TGA---------------------------------------A------------------TATCT----------------CCTGCATGTGATATGTG----TCTTGTC-----CTCGTT---GCGTC-----------------------------------------------------------------CGTC-----------------------------------------------------------------------------------------------------CTTTAAATG---------TTCAGTTTC--CGTTTTAGACATGCTGGCCGGAGCC-----TCCCGTTCC----------ACAACGCCCATCAGCCTGATTATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCA-----TGA---------------------------------------A------------------TATCT----------------CCTGCA.........................................................................................................................................................................................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCC----------ACAACGCCCATCAGCCTG......2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----TCCCGTTCC----------ACAACGCCCATCA...........2311.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGGAGCC-----TCCCGTTCC----------ACAACG..................2811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACATGCTGGCCGGAGCC-----TCCCG......................................2411.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGTG----TCTTGTC-----CTCGTT---GCGTC-----------------------------------------------------------------...............................................................................................................................................................................................................2611.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGACATGCTGGCCGGAGCC-----T..........................................2211.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCCGGAGCC-----TCCCGTTCC----------A.......................2211.001100000
........AGCAG---AA-------------GCCCCAGCAGCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...ACAGCAGCAG---AA-------------GCCCCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.CAACAGCAGCAG---AA-------------GCCCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501100000
...ACAGCAGCAG---AA-------------GCCCCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.331100000
droBip1
TCAACAGCAGCAG---AA-------------GCCCCAACAGCAAAAAC------------------------AGCCAAGTAAGTGAAGCT-AGAC----ACCTATCAT--------T----A-GTTTCTGG----------------------------------TTGTCT-TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGATTAAAAAATC-------------AAC---------------------------------------------------------------------------------------------AAATTTTAAA------------------TATTT----------------CCTGCATGTTTTAT--G----TCGTGTC-----CTCGTT---GCTTC-----------------------------------------------------------------CGTC-----------------------------------------------------------------------------------------------------CTTTACATG---------TTCAGTTTC--CGTTTTAGACATGCTGGCCGGAGCC-----TCCCGTTCC----------ACAACGCCCATCAGCCTGATCATCSizeHit CountTotal NormTotal
No Reads
droKik1
CCAGCAGCAGCAG---AA-------------GCC---------CCAGCAGA-AGC-----------------AGCCAAGTGAGTTTTG----------------TTTC-------T----TT-T-ATC-------------------------TTATTTAT---------TTTTTA-------TATTATTTAA-----------------------------------------------------------------------------TAA-------------------------------------------GGAATCTAATCTTAATTTTCCTAACTTAAGGTCTTTCTT-------------------------------------------------ATCTTGTTCTTGCAAACATATTTTTATACTAAGTAATAATTTCCAAATTTTTATTTTAAAAGCTA-TAATTTCGTAA----------------AAATGTATCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------CTTT-------------AAA-----------------------------------------TAATA-CTTACCTG-----TGA--------------------------------------------------------------------------------TTGCACGCATTAT--T---------TTTTCTTCTCGTT---GCGTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTATATGTG---------TATAGTTTC--CGTTCTAGACATGCTGGCCGGAGCC-----TCGCGTTCC----------ACGACGCCCATCAGCCTGATTGTCSizeHit CountTotal NormTotal
No Reads
droFic1
ACAGCAACAGCAGCAGCA-GCAAC---AA---------CAGCAGCAGCAAC-AGCAACAGC--A---GC---------AGCAG----------------CAGCAACAT--------C-----AATCGCAGC----------------------------------TCGCCC-CTTACTATCTACCGAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGAGCCGCTGGG-------------AAC-------GGATT----------------------------------TCTCGCGCA-----CCA------------------------------CC--------------------------------------------------ACGCGCACCAC--CATCA-----------------------------------------------------------------------------------------------------------------------------------------CCC----------CGCCGCCGCAGCCGCTGCCGCCTATGGGAATG---------CTGCCGCCTATGGGAATGGACTACAACATGCT--GGCTTTGGATATGCCCAT----GCCCATGCCCA----CG------C----TCATGCACAGCAGTATGCT--GCSizeHit CountTotal NormTotal
No Reads
droEle1
-CAGCAACAACAGCAGCA-GCAAC---AA---------CAACAACAGCAGC-AGCAACAAC--A---AC---------AACAG----------------CAGCAGCAA--------CAAC--AACAGCAG--------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAAC---------------AACAGCAGCAGCAACAACAGCA---GCAACA-------------------------ACAAGTCTTGGCTCAGCAACAACCTCAACCTGGACAACAAGTCATAACCCAGCGGCACGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTAACACATCCACAGCCCAAGGTCAACAAAT---------------CATTCAGAGCCATATGTCTTTGGCCTTGCAAAAACAGCAGCAAATGTTGCACGTCCAACAACAAACGCA-------------------------------------------------------------------------------------------------------------------------------------------ACAGCAGCCGCAACAACSizeHit CountTotal NormTotal
No Reads
droRho1
-CAACAACAGCAGCAACA-GCAAC---AA---------CAACAACAGCAGC-TGCAACAAC--A---AC---------ATCAGGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGCACAGCAACAACCTCAGCCTGGACAACAAGTCATCACCCAGCGCCACGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAACACATCTACGGCCCAAGGACAACAAAT---------------CATTCAGAGCCATATGTCTTTAGCTTTGCAGAAACAGCAGCAAATGTTGCACGTTCAACAGCAAACACAACAGCAGCCGCAACAGCAACAACAGCTTC-------------------------------------------------------------------CTC----A-GGCA----CAGCAACAG--------------------CTTTCCCAGGCACCSizeHit CountTotal NormTotal
No Reads
droBia1
-CAGCAACAGCAGCAGGA-GCAGC---AG---------CAACATTAGCAGC-AGCCACAGC--GGTAAC---------GGCAG----------------CAACATCAGCAC---------TTAAATGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAAG---------------------------------------------------AAAAATCAGCTGAA-------------AAC---------------------------------------------------------------------------------------------TGGC---AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAASizeHit CountTotal NormTotal
No Reads
droTak1
-CAGCAACAACAGCAGCA-GCAAC---AA---------CAACAAAAGCAATTAGAAACAAC--A---AC---------AAAG-----------------GCCCGGCAA--------CGATTTA-GAG-----------------------------------------------------------------------------------------------------------------------------------------------CGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAAAATGAAACAAA-------------AACCAGAAACGAATTTTCCACTC-------------------------------------------------------------------------AAAT---TTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droEug1
TCATCATCAGCAGCAGCAAGCAGC---AG---------CAGCAGCAGCAGC-ATCATCAACTCTGCAAC---------AGCAG----------------CAACATCAAGTC---------ATAACAGCAACATTAAGCCACAGCAGCAACATC--------GACTGTATG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTGGATG------------CCACTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACCACCCATTACACA-----TGCATTTG----CCCAACCCCTCAAGACAATTTATCC---ACCTCCACCACACCCCTTGGGCAA------------------------TGCAAGTTGTG----TCTCGTC--------------GGC---------------------------GACATTTTAAATTAAAAATTTCCATGCAATTTCATGTCTCGGTGGCCTTACAGTT---------------------------------------------------------------------------------------------------------------------------------------GGGCAAGCA-----CTGCATTCG----------GTCCAATCAATTAGCTTGAACGT-SizeHit CountTotal NormTotal
No Reads
dm3
-CAGCAGCAGCAGCAGCA-GCAAC---AA---------CAACAGCAGCAGC-AACAGCAGC--A---G--------------------------------TCCGGCGG--------TAAT--AATCCCAGC-------AACGGCAGCAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTCGCCTTGT---------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------CCTTGCCCATCCG----CACGCCCACGC-------CAGCC--------------------------------------------------ACGCGCACAGC--AGCCA-----------------------------------------------------------------------------------------------------------------------------------------CGCCCACG------------GCAGTCAC----------------G--------------------------------------------------------CCC----ACGCCC----TAGCGATAGCCCACGGTCATCACGGTCTGC-----------TGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................TCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGTCGCCTTGT---------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------CCTTGCCCATCC..........................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------------------------------CCTTGCCCATCCG----CACGCCCACGC-------C..................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------------------------------CCTTGCCCATCCG----CACGCCCACGC-------CA.................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAGCA-GCAAC---AA---------CAACAGCAGCAGT-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AGCAGCA-GCAAC---AA---------CAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
.........................................CAGCAGCAGC-AACAGCAGC--A---G--------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........................................GCAGCAGC-AACAGCAGC--A---G--------------------------------TC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................C---AA---------CAACAGCAGCAGC-AACAGCAGC--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CA-GCAAC---AA---------CAACAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAGCA-GCAAC---AA---------CAACAGCAGCAGC-AACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAGCA-GCAAC---AA---------CAACAGCAGCAGC-AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCAAC---AA---------CAACAGCAGCAGC-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AAC---AA---------CAACAGCAGCAGC-AACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23100.1010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GCAGCAGC-AACAGCAGC--A---G--------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AA---------CAACAGCAGCAGC-AACAGCAGC--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CAGCAGC-AACAGCAGC--A---G--------------------------------T.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................A-GCAAC---AA---------CAACAGCAGCAGC-AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............AGCA-GCAAC---AA---------CAACAGCAGCAGC-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAGCAGCAGCAGCAGCA-GCAAC---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGCAGCAGCAGCA-GCAAC---A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CAGCAGCAGCAGCA-GCAAC---AA---------CAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AA---------CAACAGCAGCAGC-AACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......CAGCAGCAGCA-GCAAC---AA---------CAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CAGCAGCA-GCAAC---AA---------CAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCA-GCAAC---AA---------CAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGCA-GCAAC---AA---------CAACAGCAGCAGC-AACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCA-GCAAC---AA---------CAACAGCAGCAGC-AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CA-GCAAC---AA---------CAACAGCAGCAGC-AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................ACAGCAGCAGC-AACAGCAGC--A---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............AGCA-GCAAC---AA---------CAACAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........CAGCAGCA-GCAAC---AA---------CAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCAAC---AA---------CAACAGCAGCAGC-AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCAAC---AA---------CAACAGCAGCAGC-AACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AGCAGCAGCA-GCAAC---AA---------CAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAGCA-GCAAC---AA---------CAACAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AC---AA---------CAACAGCAGCAGC-AACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................A-GCAAC---AA---------CAACAGCAGCAGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............GCA-GCAAC---AA---------CAACAGCAGCAGC-AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AGCAGCAGCA-GCAAC---AA---------CAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................CA-GCAAC---AA---------CAACAGCAGCAGC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................AC---AA---------CAACAGCAGCAGC-AAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......CAGCAGCAGCA-GCAAC---AA---------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................CAACAGCAGCAGC-AACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-CAACAGCAGCAGCAGCA-GAGAC---AA---------ATTCAGCAGCAGC-TGCAACAAA--A---TA---------TGCAG----------------CAGCAGCAA--------CAAT--TACAGATG--------------------------------------------------------------------------------------------------------------------------------------------CAAATGCAGC---------------AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCAACAGAATCTACAGCAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTCGCC--------------------ACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15170.06100000000010000000
droSec2
TCAACAACAACAACAGCA-GCAGC---AG---------CAGCAGCAGCAGC-AGCAACAAC--A---AC---------AGCAG----------------CAGCAGCAA--------CA-----TATG----------------------------------GACTATGTGA-CTGAGCTGCTAAGCAAAGGAGCGGAGAATGTGGGCGGCATGAATGGCAATCATCTGCTGAACTTCAACCTGGACATGGCGGCGGCCTACCAGCAGAAGCATCCACAGC---------------AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAG--------------C---------------------------------------------------------------------------------------------AGGC---GCA-------------------------------------------------CAAC--A------ATGGC-----TTCAAT---GTGGC-----------------------------------------------------------------CGAT-----------------------------------------------------------------------------------------------------TTCGGCATG---------GCCGGATTCGATGGTTTAAATATGA-------------------------------------------CAGCAGCCTCATT-CCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................AAGCAAAGGAGCGGAGAATGTGGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020200
.....................................................................................................................A-----TATG----------------------------------GACTATGTGA-CTGAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
......................................................................................................................................................................................................................................................................AGCAGAAGCATCCACAGC---------------AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
...............................................................................................................................................................................................................................................................................ATCCACAGC---------------AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAG--------------C---------------------------------------------------------------------------------------------AGGC---GCA-------------------------------------------------C....................................................................................................................................................................................................................................................................................................................2911.0010100
................................................................................................................................................................................................................................TCTGCTGAACTTCAACCTGGACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.........................................................................................................................................................................................................................................CTTCAACCTGGACATGGCGGCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.....................................................................................................................A-----TATG----------------------------------GACTATGTGA-CTGAGCTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.......................................................................................................................................................................GTGA-CTGAGCTGCTAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
..................................................................................................................................................................................................GGAGAATGTGGGCGGCATGAATGGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG---------GCCGGATTCGATGGT.....................................................................1811.0010010
..............................................................................................................................................................................................................................................ACCTGGACATGGCGGCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.....................................................................................................................................................................................................................................................................CAGCAGAAGCATCCACAGC---------------AGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATG---------GCCGGATTCGATGGTTTAA.................................................................2411.0010100
.......................................................................................................................................................................GTGA-CTGAGCTGCTAAGCAAAGGAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
..AACAACAACAACAGCA-GCAGC---AG---------C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.0511000
....................CAGC---AG---------CAGCAGCAGCAGC-AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0511000
.........ACAACAGCA-GCAGC---AG---------CAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
........AACAACAGCA-GCAGC---AG---------CAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510010
droYak3
-CAGCAACAGCAGCAGCA-GCAGC---AA---------CAACAGCAGCAAC-AGCAGCAGC--A---AC---------AGCAG----------------CAGCAGCAGTCCGGCGGCAAT--AATCCCAGC-------AACGGCAACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCCGCCCTGT---------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------CCTCGCCCATCCG----CACGCCCACGC-------CAGCC--------------------------------------------------ACGCCCACAGC--AGTCA-----------------------------------------------------------------------------------------------------------------------------------------CGCCCACA------------GCAGCCAC----------------G--------------------------------------------------------CCC----ACGCCC----TAGCGATAGCCCACGGTCATCACGGCCTGCTGCCGTCGGTGGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................A---AC---------AGCAG----------------CAGCAGCAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10201001000000
......................GC---AA---------CAACAGCAGCAAC-AGCAGCAGC--A---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27180.06101000000000
.........GCAGCAGCA-GCAGC---AA---------CAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
...........................AA---------CAACAGCAGCAAC-AGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
...........................AA---------CAACAGCAGCAAC-AGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
...............................................CAAC-AGCAGCAGC--A---AC---------AGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
..............AGCA-GCAGC---AA---------CAACAGCAGCAAC-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
......................................................CAGCAGC--A---AC---------AGCAG----------------CAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000010000
............................A---------CAACAGCAGCAAC-AGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
...............................................CAAC-AGCAGCAGC--A---AC---------AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
.......CAGCAGCAGCA-GCAGC---AA---------CAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
.....................................................GCAGCAGC--A---AC---------AGCAG----------------CAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
..AGCAACAGCAGCAGCA-GCAGC---AA---------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
...................GCAGC---AA---------CAACAGCAGCAAC-AGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
......ACAGCAGCAGCA-GCAGC---AA---------CAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100100000000
.......CAGCAGCAGCA-GCAGC---AA---------CAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000000000
.......................C---AA---------CAACAGCAGCAAC-AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000000000
...............................................CAAC-AGCAGCAGC--A---AC---------AGCAG----------------CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010000000
droEre2
-CAGCAGCAGCAACAACA-ACAAC---AA---------GAACAGCAGCAGC-AACGGGAAC--A---A------------CAG----------------CAACAGGATAAC---------AAAGGAG-----------------------------------------------------------------------------------------------------------------------------------------------CAGAGAATAGAATATAAAAAATACA-------------------------------------------------------------------------------------------------------------------------------AAATACAAAAATAAGCAAGAAGGACGAAGGTCGAA-GCAGGAAGCAAGTAGAGACGGAATTTGTTATCATCTTGAAAACGCG-CACACGCA------------------------------------------------------------------------------------------------------------------------------------------------------CACACATA-------------GAC-------------------------------------------------------------------------ACACACACAC------ACACACGC---ACAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........AACAACA-ACAAC---AA---------GAACAGCAGCAGC-AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000
...........AACAACA-ACAAC---AA---------GAACAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
.....................AAC---AA---------GAACAGCAGCAGC-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310001000
.......................C---AA---------GAACAGCAGCAGC-AAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.0710100000

Generated: 05/21/2015 at 04:11 PM