dvi_20540

CDS [Dvir\GJ11522-cds]; exon [dvir_GLEANR_11554:2]; exon [dvir_GLEANR_11554:1]; CDS [Dvir\GJ11522-cds]; intron [Dvir\GJ11522-in]

TCTTACCTAAGGACTACAAGCGGTTGCCGCCGATACTCTTATAATTAGACCATGCACAGTACAAATATTAAGGTCTCGCCAAGTTCGCGGCTCGACTGGGAACTAAACCACGAGAAAGATTGAATTCTGTGAAGAGAAAGTTATAAATCTGAAGATACGTTTATAACTAACTTTGCGTAGGCCGACCGAGGAGGTCGTT ************************************************............((.........((((.(((((.(((((((((...........))))))))).............)).))).))))..........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR060686 Argx9_0-2h_embryos_total	SRR060681 Argx9_testes_total	SRR060687 9_0-2h_embryos_total	M028 head	SRR060661 160x9_0-2h_embryos_total	SRR060657 140_testes_total	M047 female body	SRR060679 140x9_testes_total
............................................................................................................CGCGGGAAAGATTGAATT.........................................................................	18	2	3	1.33	4	2	1	1	0	0	0	0	0
......................................................................................................................................................................CTAACATTGCGCAGGCCAAC.............	20	3	4	0.25	1	0	0	0	1	0	0	0	0
..............TACGAGCCGTTGCCGCCGACA....................................................................................................................................................................	21	3	8	0.13	1	0	0	0	0	1	0	0	0
.....................................................................................................................................................TGAAGATACGTGTGTAAC................................	18	2	18	0.06	1	0	0	0	0	0	1	0	0
.............................................................................................................................TCGGTTAAGAGAAAGTTA........................................................	18	2	19	0.05	1	0	0	0	0	0	0	0	1
............................................TTAGGCTATGCATAGTACA........................................................................................................................................	19	3	19	0.05	1	0	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droVir3	scaffold_13049:18880638-18880836 -	dvi_20540	AGAATGGAT--TCCTGATGTTCGCCAACGGCGGCTATGAGAATATTAATCTGGTACGT-GTCATGTT----TATAA-------------TTCCAGAGCGGTTCAAGCGCCGAGCTGACCCTTGATT-TGGTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------T--AAGAC-----------------------------------------------------AC-TTCTCTT------TCAATATTTAGACTTCTATGCAAATATTGATTGAAACGCATCCGGCTGGCTCCTCCAGCAA
droMoj3	scaffold_6680:12344160-12344326 +		AGAACGGAT--TCCTGATGTTCGCCAATGGCGGCTATGAGAACATTAATCTGGTAAGG-GCTCAG-----------------------------------------------------------------------------------------------------CGTAAT-CCCAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTT----ATATATTCCATA------------------------------------------------------------------------AATC------------------------------------------------------------CC-ATTCTTT------TCTCTCGGCAGACTTCCATGCAGCTCTTGATTAAGACGCATCCAGGTGGCTCTTCCAGTAA
droGri2	scaffold_15110:19847226-19847444 -		AGAACGGAT--TCCTAATGTTCGCCAATGGCGGCTATGAGAACATCAATCTGGTAAGT-GGAAA---C----------------------------------------------------TTGACT-CAGAGCC------------ATA--T--------GTTTAATA---------------------------------------------------------------------------------------------------------------------------------------GTAA-------------------------------------------------------------------------------------------AGGAACATACTCAAATTCATTGGACTGCATATTTAAATTGATTTCCATCT---------TTAATGAA---------------------------------------------------------------------AT-ATCTTGT------CTCTCCTTCAGACATCCATGCAAACTTTGATTGAAACGCATCCGGGTGGCTCTTCTGGCAA
droWil2	scf2_1100000004830:498410-498578 -		AAAATGGTT--TCATGCTCTTTGCCAATGGCGGCTATGAGAATGCAAATGTGGTAAGT-TATCCC--ACAG------------------------------------------------------------------------------------------------------ATTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------CAAACA----GGAAATC----C------------------------------------------------------------------------CACATAAATGT-----------------------------------------------------AT-ATATCA------ATTTACTTTCAGTCATCCATGCAAGTGTTGATCGAAACTCATCCGGCTGGTTCGTCTAGCAA
dp5	XR_group8:7873367-7873524 +		AGAACGCCT--TCGTCATGTTCGCCAACGGTGGCTACGAGAATGCCAATTCTGTAAGT-CATTCGTT----CCCGA-------------TT------------------------------------CAGAACC------------ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--A-----------------------------------------------------TCTCC-TG-----ACCACACTGTTCTTCCAGAGCTCCATGTCGGTGCTGGTTGAGACCCATCCGGCCGGGTCCTCCAGCAA
droPer2	scaffold_40:62981-63138 +		AGAACGCAT--TCGTCATGTTCGCCAACGGTGGCTACGAGAATGCCAATTCTGTAAGT-CATTCGTT----GCCGA-------------TT------------------------------------CAGTACC------------ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--A-----------------------------------------------------TCTCC-TG-----ACCACACTGTTCTTCCAGAGCTCCATGTCGGTGCTGGTTGAGACCCATCCGGCTGGCTCCTCCAGCAA
droAna3	scaffold_13337:10823667-10823834 +		ACAATGCCT--TCATTATGTTTGCCAACGGCGGCTATGTGAACTCCAATGCGGTGAGT-CCTGGC--A--T------------------------------------------------------------------------------------------------------GGAAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCTT----GGATACCTTATA------------------------------------------------------------------------ACTT--ACATT-----------------------------------------------------AT-TTTCCT------ATTTATTTTTAGAGCTCCATGAGCGTTTTGATTGAGACCCATCCGGCCGGCTCCTCTAGCAA
droBip1	scf7180000396569:555625-555791 -		ACAATGCCT--TCATCATGTTTGCCAATGGGGGCTACGTGAACTCCAATGCAGTAAGT-CCTGAGATCCAG------------------------------------------------------------------------------------------------------ATACACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC----GGATGTCTAATA------------------------------------------------------------------------ACTG--A-----------------------------------------------------TTTCC-TG-----TCC---CTATTTTTGTAGAGCTCCATGAGTGTTTTGATTGAGACCCATCCGGGTGGCTCCTCCAGCAA
droKik1	scf7180000302441:3181590-3181761 +		ACAACGCCT--TCATCATGTTCGCCAACGGAGGTTACGAGAATGCCAATGCGGTGAGT-GGGGA----------------------------------------------------------------------------------------------------------------AAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATAGCTCTATTCTATTGCTATAATGTT-TTAAAACCC-AACCCCC------CTTCTTTACAGAGCTCCATGAGCGTCCTTATCGAGACCCATCCGGGTGGCTCCTCCAGCAA
droFic1	scf7180000454113:1869232-1869513 -		ACAATGCGT--TCATCATGTTCGCCAACGGGGGTTACGTGAATGCCAATGCGGTGAGT-AAAAT---AGTTA-TGACATCTACTCTTAATT------------------------------------TGTTACA--------------ACAT-------TT--------------CTAAGAAG---------------------------------------------AATCAAGGTATAATAAGTACCTCATATCCTTTACTTTATCAATAATTAATAGGCAAATTAT-----TAGGTCTTCCAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------G--AAGAAAACTTTTCTTTATTACG------------------------ATCTAAT--GA----A-----ACCAAAATCTTTTTGCAGAGCTCCATGAGTGTGCTGATTGAGACCCATCCGGGTGGATCCTCCAGCAA
droEle1	scf7180000490728:107170-107274 +		CTAGTTCTT--AATTTATTTTTATTC----------------------------------------------CCAA-------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTT-----------------------------------------------------AT-GTTTTAT------TCCCTTTTTAGACTCTCCTCCCACAAATCGCTGAAACGCATCCCGCTGGAGTCTCCTCCAA
droRho1	scf7180000780074:55078-55276 +		AATATCTGTCAGCCCGATGTTGTGCTGCGTCCGGTGTGCGAAAG------------------TG---CCAT-----------------------------------------GAAGACACTTTATTCCGGCGGTCGTGTCAACATGGTG--G--------GTTTACTCTTAAAAGATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAAAATGGAATAT----T------------------------------------------------------------------------AATA------------------------------------------------------------TT-ATTTTAT------TTATTAATTAGACCGCTATGCCGGAAGCCATGGCCACCCACCCTGCGGGCTGTTCCACGGA
droBia1	scf7180000302193:5602106-5602366 -		ACAACGCAT--TCATCATGTTCGCCAACGGCGGCTACGTTAATGCCAATGCGGTGAGT-AGTAT---CAAA----------------------------------------------------ATC-TGTAGAT------------ACA--TCTTTTTAGGCCTAGCT---------------------------------------------------------------------------------------------------------------------------------------CTAAGGCAAAGTACTTTTATTTCATTT-GTACCTGCATCCCAAATTTCATAT---------------------------------------------------------------------------------------CAACTAAACATAGATTAGATCACATATT-----------------TTGAAAAAGAA------------------------AGTT-ATAAAAAC--G----A------CTCCCCTTTTAGAGCTCCATGAGTGTCCTGATTGAGACCCACCCGGCTGGCTCGTCCAGCAA
droTak1	scf7180000415254:207376-207604 -		ATAACGCCT--TCATCATGTTTGCTAACGGAGGTTACGTGAATTCCAATGCGGTGAGTTAAGAT---CGATATAGA-------------TT------------------------------------TATAATA--------------GCAT-------TT--------------CCAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------CCGCATCCCAAAATTCATAT---------------------------------------------------------------------------------------CAATCCATCGAGGATTAGGTGAAATATT-----------------TTTTTAAGATG------------------------AGTT-AT--AAAAC-TACCCCC------TTGCTTTTCAGAGCTCTATGAGCGTCCTGATTGAGACCCACCCGGCTGGCTCCTCCAGCAA
droEug1	scf7180000409711:5527799-5527995 -		ACAACGCTT--TCGTCATGTTCGCCAACGGCGGTTACGTGAATGCCAATGCGGTGAGT-ACGAT---CAAG------------------------------------------------------------------------------------------------------ATATATACGTAACGAAAGATGTCTGTTAGATTCTTAACTAAAATATGAAGTAATC------TGTATAATACCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT------TCTCTTTCCAGAGCTCCATGAGCGTCCTGATTGAGACCCACCCAGCTGGCTCCTCCAGCAA
dm3	chr3L:20454567-20454781 +		ACAACGCCT--TCATAATGTTTGCCAATGGTGGATACGTTAATGCCAATGCGGTGAGT-AGGAT---CGAT------------------------------------------------------------------------------------------------------ATGTAAT---------------------------------------------------------------TCTCACT-------------T---------------------TATT----------------------------------------TAGAACTTCCATTCTAAATGTCATATCGTAAAAGTTACT-------A----------------------TTGAAAGAA---------------------------------------------------------------GTCATAATTGG-----------------------------------------------------AC-ATTT-----AATATGTACTTTCAGAGCTCCATGAGCGTCCTGATCGAGACCCATCCGGCTGGATCCTCTAGCAA
droSim2	3l:20023768-20023946 +		ACAACGCCT--TCATCATGTTTGCCAATGGCGGATACGTTAATTCCAATGCGGTGAGT-AGGAT---CGAT------------------------------------------------------------------------------------------------------ATATAAA---------------------------------------------------------------CCTCACT-------------T---------------------TATTCCATA------------------------------------------------------------TTGTAA---------------------------------------------AA---------------------------------------------------------------GTCATAATTGG-----------------------------------------------------AC-ATTT-----AATATGTACTTTCAGAGCTCCATGAACGTCCTGATCGAAACCCATCCGGCTGGGTCCTCCAGCAA
droSec2	scaffold_11:349498-349676 +		ACAACGCCT--TCATCATGTTCGCCAATGGCGGATACGTTAATTCCAATGCGGTGAGT-AGGAT---CGAT------------------------------------------------------------------------------------------------------ATATAAA---------------------------------------------------------------CCTCACT-------------T---------------------TATTCCATA------------------------------------------------------------TCGTAG---------------------------------------------AA---------------------------------------------------------------GTCATAATTGG-----------------------------------------------------AC-ATTT-----AATATGTACTTTCAGAGCTCCATGAACGTTCTGATCGAGACCCATCCGGCTGGATCCTCCAGCAA
droYak3	3L:20100782-20101017 -		ACAACGCCT--TCATTATGTTCGCTAATGGCGGATACGTTAATGCCAATGCGGTGAGT-AGGAT---CAAT------------------------------------------------------------------------------------------------------ATAAAAG---------------------------------------------------------------CCTCTTT-------------T---------------------TATTAGATA---------TCGG----------------TGTCT-TGGAACTCACAGTCTAAATTTCATATTGTTGAAATTATTCCAAGGAA----------------------ACGAATAAA---------------------------------------------------------------ATCACAATTGC-----------------------------------------------------AC-ATTT-----AAAATGTACTTTCAGAGCTCCATGAGCGTCCTAATCGAGACCCATCCGGCTGGATCCTCCAGCAA
droEre2	scaffold_4784:20155910-20156093 +		ACAACGCCT--TCATTATGTTTGCTAATGGTGGATACGTTAATGCCAATGCGGTGAGT-AGGAT---CAAT------------------------------------------------------------------------------------------------------GTGTAAG---------------------------------------------------------------CCTCTTT-------------T---------------------CATTAGATA---------TTAG-------------------------------------------------------------------------------------------ATGAAGGTG---------------------------------------------------------------ATCATAATTGG-----------------------------------------------------AT-ATTC-----AAAATGTACTTTCAGAGCTCCATGAGTGTCCTAATCGAGACCCATCCGGCTGGATCCTCCAGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droVir3

AGAATGGAT--TCCTGATGTTCGCCAACGGCGGCTATGAGAATATTAATCTGGTACGT-GTCATGTT----TATAA-------------TTCCAGAGCGGTTCAAGCGCCGAGCTGACCCTTGATT-TGGTGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCTAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------T--AAGAC-----------------------------------------------------AC-TTCTCTT------TCAATATTTAGACTTCTATGCAAATATTGATTGAAACGCATCCGGCTGGCTCCTCCAGCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..AATGGAT--TCCTGATGTTCGCCAACGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GAATGGAT--TCCTGATGTTCGCCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGAATGGAT--TCCTGATGTTCGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATTGATTGAAACGCATCCGGCT..............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATATTGATTGAAACGCATCC..................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAAACGCATCCGGCT..............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGGCTGGCTCCTCC.....	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAACGGCGGCTATGAGAATATTAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGAAACGCATCCGGCTGGCTCC........	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GATGTTCGCCAACGGCGGCTATGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CCTGATGTTCGCCAACGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CTGATGTTCGCCAACGGCGGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATCCGGCTGGCTCCTCCAGCA.	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AT--TCCTGATGTTCGCCAACGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTATGCAAATATTGATTGAAACGCATCCGGCTGGCTCCTCC.....	44	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................T----TATAA-------------TTCCAGAGCGGTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTGAAACGCATCCGGCTGGCTCCTCC.....	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....GGAT--TCCTGATGTTCGCCAACGGCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATCCGGCTGGCTCCTCC.....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...ATGGAT--TCCTGATGTTCGCCAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGAACGGAT--TCCTGATGTTCGCCAATGGCGGCTATGAGAACATTAATCTGGTAAGG-GCTCAG-----------------------------------------------------------------------------------------------------CGTAAT-CCCAAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTT----ATATATTCCATA------------------------------------------------------------------------AATC------------------------------------------------------------CC-ATTCTTT------TCTCTCGGCAGACTTCCATGCAGCTCTTGATTAAGACGCATCCAGGTGGCTCTTCCAGTAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................AATGGCGGCTATGAGAACATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
........................CAATGGCGGCTATGAGAACATTAATCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0
.......AT--TCCTGATGTTCGCCAATGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
AGAACGGAT--TCCTGATGTTCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTAAGACGCATCCAGGTGGCTCTTCC.....	29	1	1.00	1	1	0	0	0	0	0

droGri2

AGAACGGAT--TCCTAATGTTCGCCAATGGCGGCTATGAGAACATCAATCTGGTAAGT-GGAAA---C----------------------------------------------------TTGACT-CAGAGCC------------ATA--T--------GTTTAATA---------------------------------------------------------------------------------------------------------------------------------------GTAA-------------------------------------------------------------------------------------------AGGAACATACTCAAATTCATTGGACTGCATATTTAAATTGATTTCCATCT---------TTAATGAA---------------------------------------------------------------------AT-ATCTTGT------CTCTCCTTCAGACATCCATGCAAACTTTGATTGAAACGCATCCGGGTGGCTCTTCTGGCAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droWil2

AAAATGGTT--TCATGCTCTTTGCCAATGGCGGCTATGAGAATGCAAATGTGGTAAGT-TATCCC--ACAG------------------------------------------------------------------------------------------------------ATTTAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------------------CAAACA----GGAAATC----C------------------------------------------------------------------------CACATAAATGT-----------------------------------------------------AT-ATATCA------ATTTACTTTCAGTCATCCATGCAAGTGTTGATCGAAACTCATCCGGCTGGTTCGTCTAGCAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATCGAAACTCATCCGGCT..............	22	1	2.00	2	0	1	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGCTGGTTCGTCTAGC..	20	1	1.00	1	0	1	0	0	0
...................TTTGCCAATGGCGGCTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGGCTGGTTCGTCTA....	19	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCCATGCAAGTGTT.................................	18	1	1.00	1	0	1	0	0	0
..AATGGTT--TCATGCTCTTTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
................................GCTATGAGAATGCAAATGTGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATGCAAGTGTTGATCGAAACTC......................	26	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCATCCGGCTGGTTCGTCTA....	23	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGTTGATCGAAACTCATCCGGCT..............	28	1	1.00	1	0	1	0	0	0
............................GGCGGCTATGAGAATGCAAATGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCGAAACTCATCCGGCT..............	20	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAACTCATCCGGCTGG............	19	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCATCCGGCTGGTTCGTC......	21	1	1.00	1	0	0	1	0	0
.........................AATGGCGGCTATGAGAATGCAAATGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGCTGGTTCGTCTAG...	19	1	1.00	1	0	1	0	0	0
........................CAATGGCGGCTATGAGAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTCATCCGGCTGGTTCGTC......	23	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGTTGATCGAAACT.......................	19	1	1.00	1	0	0	1	0	0
......................GCCAATGGCGGCTATGAGAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..................................TATGAGAATGCAAATGTGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0

dp5

AGAACGCCT--TCGTCATGTTCGCCAACGGTGGCTACGAGAATGCCAATTCTGTAAGT-CATTCGTT----CCCGA-------------TT------------------------------------CAGAACC------------ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--A-----------------------------------------------------TCTCC-TG-----ACCACACTGTTCTTCCAGAGCTCCATGTCGGTGCTGGTTGAGACCCATCCGGCCGGGTCCTCCAGCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCCGGCCGGGTCCTCCAGC..	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGAACGCAT--TCGTCATGTTCGCCAACGGTGGCTACGAGAATGCCAATTCTGTAAGT-CATTCGTT----GCCGA-------------TT------------------------------------CAGTACC------------ATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C--A-----------------------------------------------------TCTCC-TG-----ACCACACTGTTCTTCCAGAGCTCCATGTCGGTGCTGGTTGAGACCCATCCGGCTGGCTCCTCCAGCAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.GAACGCAT--TCGTCATGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	4	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCCGGCTGGCTCCTCCAG...	20	1	3.00	3	3	0	0	0	0	0
............CGTCATGTTCGCCAACGGTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCGGTGCTGGTTGAGACCC......................	23	1	1.00	1	1	0	0	0	0	0
..AACGCAT--TCGTCATGTTCGCCAACGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATGTCGGTGCTGGTTG............................	19	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACACTGTTCTTCCAGAGCTCC............................................	24	1	1.00	1	0	1	0	0	0	0
.......AT--TCGTCATGTTCGCCAACGGTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
AGAACGCAT--TCGTCATGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCATCCGGCTGGCTC.........	19	1	1.00	1	1	0	0	0	0	0

droAna3

ACAATGCCT--TCATTATGTTTGCCAACGGCGGCTATGTGAACTCCAATGCGGTGAGT-CCTGGC--A--T------------------------------------------------------------------------------------------------------GGAAAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCTT----GGATACCTTATA------------------------------------------------------------------------ACTT--ACATT-----------------------------------------------------AT-TTTCCT------ATTTATTTTTAGAGCTCCATGAGCGTTTTGATTGAGACCCATCCGGCCGGCTCCTCTAGCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................GTTTGCCAACGGCGGCTATGTGAACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
........................CAACGGCGGCTATGTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCATCCGGCCGGCTCCTCTAGC..	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATTGAGACCCATCCGGCCGGC...........	25	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGCCGGCTCCTCTA....	18	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCATCCGGCCGGCTC.........	18	1	1.00	1	0	1	0	0	0	0
........................CAACGGCGGCTATGTGAACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0

droBip1

ACAATGCCT--TCATCATGTTTGCCAATGGGGGCTACGTGAACTCCAATGCAGTAAGT-CCTGAGATCCAG------------------------------------------------------------------------------------------------------ATACACA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC----GGATGTCTAATA------------------------------------------------------------------------ACTG--A-----------------------------------------------------TTTCC-TG-----TCC---CTATTTTTGTAGAGCTCCATGAGTGTTTTGATTGAGACCCATCCGGGTGGCTCCTCCAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACAACGCCT--TCATCATGTTCGCCAACGGAGGTTACGAGAATGCCAATGCGGTGAGT-GGGGA----------------------------------------------------------------------------------------------------------------AAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATATAGCTCTATTCTATTGCTATAATGTT-TTAAAACCC-AACCCCC------CTTCTTTACAGAGCTCCATGAGCGTCCTTATCGAGACCCATCCGGGTGGCTCCTCCAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACAATGCGT--TCATCATGTTCGCCAACGGGGGTTACGTGAATGCCAATGCGGTGAGT-AAAAT---AGTTA-TGACATCTACTCTTAATT------------------------------------TGTTACA--------------ACAT-------TT--------------CTAAGAAG---------------------------------------------AATCAAGGTATAATAAGTACCTCATATCCTTTACTTTATCAATAATTAATAGGCAAATTAT-----TAGGTCTTCCAAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------G--AAGAAAACTTTTCTTTATTACG------------------------ATCTAAT--GA----A-----ACCAAAATCTTTTTGCAGAGCTCCATGAGTGTGCTGATTGAGACCCATCCGGGTGGATCCTCCAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTAGTTCTT--AATTTATTTTTATTC----------------------------------------------CCAA-------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTT-----------------------------------------------------AT-GTTTTAT------TCCCTTTTTAGACTCTCCTCCCACAAATCGCTGAAACGCATCCCGCTGGAGTCTCCTCCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AATATCTGTCAGCCCGATGTTGTGCTGCGTCCGGTGTGCGAAAG------------------TG---CCAT-----------------------------------------GAAGACACTTTATTCCGGCGGTCGTGTCAACATGGTG--G--------GTTTACTCTTAAAAGATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAAAAATGGAATAT----T------------------------------------------------------------------------AATA------------------------------------------------------------TT-ATTTTAT------TTATTAATTAGACCGCTATGCCGGAAGCCATGGCCACCCACCCTGCGGGCTGTTCCACGGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACAACGCAT--TCATCATGTTCGCCAACGGCGGCTACGTTAATGCCAATGCGGTGAGT-AGTAT---CAAA----------------------------------------------------ATC-TGTAGAT------------ACA--TCTTTTTAGGCCTAGCT---------------------------------------------------------------------------------------------------------------------------------------CTAAGGCAAAGTACTTTTATTTCATTT-GTACCTGCATCCCAAATTTCATAT---------------------------------------------------------------------------------------CAACTAAACATAGATTAGATCACATATT-----------------TTGAAAAAGAA------------------------AGTT-ATAAAAAC--G----A------CTCCCCTTTTAGAGCTCCATGAGTGTCCTGATTGAGACCCACCCGGCTGGCTCGTCCAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATAACGCCT--TCATCATGTTTGCTAACGGAGGTTACGTGAATTCCAATGCGGTGAGTTAAGAT---CGATATAGA-------------TT------------------------------------TATAATA--------------GCAT-------TT--------------CCAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------CCGCATCCCAAAATTCATAT---------------------------------------------------------------------------------------CAATCCATCGAGGATTAGGTGAAATATT-----------------TTTTTAAGATG------------------------AGTT-AT--AAAAC-TACCCCC------TTGCTTTTCAGAGCTCTATGAGCGTCCTGATTGAGACCCACCCGGCTGGCTCCTCCAGCAA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

ACAACGCTT--TCGTCATGTTCGCCAACGGCGGTTACGTGAATGCCAATGCGGTGAGT-ACGAT---CAAG------------------------------------------------------------------------------------------------------ATATATACGTAACGAAAGATGTCTGTTAGATTCTTAACTAAAATATGAAGTAATC------TGTATAATACCTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT------TCTCTTTCCAGAGCTCCATGAGCGTCCTGATTGAGACCCACCCAGCTGGCTCCTCCAGCAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

ACAACGCCT--TCATAATGTTTGCCAATGGTGGATACGTTAATGCCAATGCGGTGAGT-AGGAT---CGAT------------------------------------------------------------------------------------------------------ATGTAAT---------------------------------------------------------------TCTCACT-------------T---------------------TATT----------------------------------------TAGAACTTCCATTCTAAATGTCATATCGTAAAAGTTACT-------A----------------------TTGAAAGAA---------------------------------------------------------------GTCATAATTGG-----------------------------------------------------AC-ATTT-----AATATGTACTTTCAGAGCTCCATGAGCGTCCTGATCGAGACCCATCCGGCTGGATCCTCTAGCAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................ATGGTGGATACGTTAATGCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCGTCCTGATCGAGACC.......................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
............................GGTGGATACGTTAATGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................ATGGTGGATACGTTAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AATGTTTGCCAATGGTGGATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................AATGGTGGATACGTTAATGCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTCCATGAGCGTCCTGATCGA...........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ATGGTGGATACGTTAATGCCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGAGCGTCCTGATCGAGACCCATC...................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGATCGAGACCCATCCGGCTGG............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCCTGATCGAGACC.......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCATGAGCGTCCTGATCGA...........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ACAACGCCT--TCATCATGTTTGCCAATGGCGGATACGTTAATTCCAATGCGGTGAGT-AGGAT---CGAT------------------------------------------------------------------------------------------------------ATATAAA---------------------------------------------------------------CCTCACT-------------T---------------------TATTCCATA------------------------------------------------------------TTGTAA---------------------------------------------AA---------------------------------------------------------------GTCATAATTGG-----------------------------------------------------AC-ATTT-----AATATGTACTTTCAGAGCTCCATGAACGTCCTGATCGAAACCCATCCGGCTGGGTCCTCCAGCAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGTCCTGATCGAAACC.......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CATGTTTGCCAATGGCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGTCCTGATCGAAACCCATCC..................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCCATGAACGTCCTGATC.............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGAACGTCCTGATCGAAACCC......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTCCATGAACGTCCTGATC.............................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCATCCGGCTGGGTCCTCCA....	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................GTTTGCCAATGGCGGATACGTTAATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTCCTGATCGAAACCCATCCGGCT..............	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATCATGTTTGCCAATGGCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............CATGTTTGCCAATGGCGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCATGAACGTCCTGATCGAAACCC......................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ACAACGCCT--TCATCATGTTCGCCAATGGCGGATACGTTAATTCCAATGCGGTGAGT-AGGAT---CGAT------------------------------------------------------------------------------------------------------ATATAAA---------------------------------------------------------------CCTCACT-------------T---------------------TATTCCATA------------------------------------------------------------TCGTAG---------------------------------------------AA---------------------------------------------------------------GTCATAATTGG-----------------------------------------------------AC-ATTT-----AATATGTACTTTCAGAGCTCCATGAACGTTCTGATCGAGACCCATCCGGCTGGATCCTCCAGCAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

ACAACGCCT--TCATTATGTTCGCTAATGGCGGATACGTTAATGCCAATGCGGTGAGT-AGGAT---CAAT------------------------------------------------------------------------------------------------------ATAAAAG---------------------------------------------------------------CCTCTTT-------------T---------------------TATTAGATA---------TCGG----------------TGTCT-TGGAACTCACAGTCTAAATTTCATATTGTTGAAATTATTCCAAGGAA----------------------ACGAATAAA---------------------------------------------------------------ATCACAATTGC-----------------------------------------------------AC-ATTT-----AAAATGTACTTTCAGAGCTCCATGAGCGTCCTAATCGAGACCCATCCGGCTGGATCCTCCAGCAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGAGACCCATCCGGCTG.............	20	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCATCCGGCTGGATCCTCCA....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.CAACGCCT--TCATTATGTTCGCTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGACCCATCCGGCTGG............	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.......................CTAATGGCGGATACGTTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGCTGGATCCTCCAGC..	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTAATCGAGACCCATCCGGCT..............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGAGCGTCCTAATCGAGACC.......................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................TAATGGCGGATACGTTAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................GCTAATGGCGGATACGTTAATGCCAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................CTAATGGCGGATACGTTAATGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......CT--TCATTATGTTCGCTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

ACAACGCCT--TCATTATGTTTGCTAATGGTGGATACGTTAATGCCAATGCGGTGAGT-AGGAT---CAAT------------------------------------------------------------------------------------------------------GTGTAAG---------------------------------------------------------------CCTCTTT-------------T---------------------CATTAGATA---------TTAG-------------------------------------------------------------------------------------------ATGAAGGTG---------------------------------------------------------------ATCATAATTGG-----------------------------------------------------AT-ATTC-----AAAATGTACTTTCAGAGCTCCATGAGTGTCCTAATCGAGACCCATCCGGCTGGATCCTCCAGCAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

-16.0	-15.4	-15.3	-15.1

dvi_20540

scaffold_13049:18880688-18880786 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

##################################################---------------------------------------------------------------------------------------------------################################################## AGAATGGATTCCTGATGTTCGCCAACGGCGGCTATGAGAATATTAATCTGGTACGTGTCATGTTTATAATTCCAGAGCGGTTCAAGCGCCGAGCTGACCCTTGATTTGGTGCTCTTTCTAACTTAAGACACTTCTCTTTCAATATTTAGACTTCTATGCAAATATTGATTGAAACGCATCCGGCTGGCTCCTCCAGCAA ************************************************............((.........((((.(((((.(((((((((...........))))))))).............)).))).))))..........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M047 female body	M061 embryo	SRR060665 9_females_carcasses_total	SRR1106728 larvae	SRR060664 9_males_carcasses_total	GSM1528803 follicle cells	M027 male body	SRR1106714 embryo_2-4h	SRR1106722 embryo_10-12h	SRR1106729 mixed whole adult body	V116 male body	SRR060671 9x160_males_carcasses_total	SRR060667 160_females_carcasses_total	SRR060676 9xArg_ovaries_total	SRR060681 Argx9_testes_total	SRR060666 160_males_carcasses_total	V053 head	SRR060677 Argx9_ovaries_total	SRR060678 9x140_testes_total	SRR060679 140x9_testes_total	SRR060687 9_0-2h_embryos_total
..AATGGATTCCTGATGTTCGCCAACGGC..........................................................................................................................................................................	27	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CTGACTTCTATGCAAATATTGATTGAA..........................	27	2	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GAATGGATTCCTGATGTTCGCCAACG............................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AGAATGGATTCCTGATGTTCGCT................................................................................................................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................AAATATTGATTGAAACGCATCCGGCT..............	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................AAATATTGATTGAAACGCATCC..................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................GATTGAAACGCATCCGGCT..............	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CATCCGGCTGGCTCCTCC.....	18	0	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CAACGGCGGCTATGAGAATATTAAT........................................................................................................................................................	25	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TTGATTGAAACGCATCCGGCTGGCTCC........	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GATGTTCGCCAACGGCGGCTATGAGA................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CCTGATGTTCGCCAACGGC..........................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CTCATCCGGCTGGCTCCTCC.....	20	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CTGATGTTCGCCAACGGCGGCT......................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACGCATCCGGCTGGCTCCTCCAGCA.	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ATTCCTGATGTTCGCCAACGGC..........................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................ACCCTGGATTTGGAGCTGTTTC.................................................................................	22	3	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................CTTCTATGCAAATATTGATTGAAACGCATCCGGCTGGCTCCTCC.....	44	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TTATAATTCCAGAGCGGTTCA...................................................................................................................	21	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TTGATTGAAACGCATCCGGCTGGCTCCTCC.....	30	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....GGATTCCTGATGTTCGCCAACGGCGG........................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CGCATCCGGCTGGCTCCTCC.....	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATGGATTCCTGATGTTCGCCAACG............................................................................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................ATCCGGGTGGCCCCTCCA....	18	2	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CATCCGGGTGCCCCCTCCA....	19	3	13	0.54	7	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1
..............................................................................................................................................................................CGCATCCGGGTGGGACCTCCA....	21	3	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CGAATCCGGCTGGGACCTCCA....	21	3	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GTGCTCTTTCTAGCTTAAAAAA.....................................................................	22	3	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................ATCCGGCTGGGACCTCCA....	18	2	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................CTAGAGTTGGTGCTCTTCCT................................................................................	20	3	10	0.20	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................GACTCCGGCTCGCTCCTCCA....	20	3	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................TTAAGACACTGCCCTTTC...........................................................	18	2	7	0.14	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TAAGACTTCGATGCAAATAC..................................	20	3	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0