ID:

dvi_20533

 Coordinate:

scaffold_13049:18847846-18847996 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.5 -6.3 -5.6

Flybase annnotation

CDS [Dvir\GJ11527-cds]; exon [dvir_GLEANR_11559:1]; intron [Dvir\GJ11527-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAACAACAACAGCAACAAGCATAACAACAACCACAGCGCAGCAGCCGCAGGTGAATATATATGACTAAATTCGCTTGGGTGCAATCAACAAAAGCAACAACAACACCAACTACAACAACTACACAATCACAGCGACACCAACAACAGCTACGACAACTATTTGCACTCTGACGTCACAATTATGATGGCTCTTCTGCTATTGCGGCTTTTTGATCTATTGGCTGCCGTTATAAAAGTGCTGCCCATCATGT
**************************************************************............(((.((((................................................................)).))..))).********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060665
9_females_carcasses_total
 SRR060678
9x140_testes_total
 M027
male body		 M061
embryo
 SRR060679
140x9_testes_total
 SRR060684
140x9_0-2h_embryos_total
 V047
embryo
 SRR060671
9x160_males_carcasses_total
 SRR060664
9_males_carcasses_total
 GSM1528803
follicle cells		 M028
head
 SRR060681
Argx9_testes_total
 SRR060686
Argx9_0-2h_embryos_total
 SRR1106729
mixed whole adult body
 SRR060673
9_ovaries_total
 SRR060669
160x9_females_carcasses_total
.......................................................................................................................................CACCAACAACAGCTACGACAAC.............................................................................................. 22 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CTTTTTGATCTATTGGCTGCC......................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0
...............................................................................................................................................................TTTGCACTCTGACGTCACA......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGCTCTTCTGCTATTGCGGC............................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................GACTAAATTCGCTTGGGTGC......................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTTGATCTATTGGCTGCCGTT...................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................TGCCGTTATAAAAGTGCTGCCCATCA... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................ATATGACTAAATTCGCTTGGGTGC......................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................AACTATTTGCACTCTGACGTCACAA........................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AACTACACAATCACAGCGACACC................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGCTGCCGTTATAAAAGTGCTGCCCATC.... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................AAATTCGCTTGGGTGCAATCAACA................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TTGCACTCTGACGTCACAATTATGA.................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AAAGCAACAACAACACCAACTACAAC....................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................ATTTGCACTCTGACGTCAC.......................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CAACTACACAATCACAGCGAC................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................AAGCATAACAACAACCACAGC...................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CTACACAATCACAGCGACACC................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................GCAACAACAACACCAACTACAACAAC.................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................AACAACCACAGCGCAGCAGCCGCA.......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................CACAATTATGATGGCTCTT.......................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................AACAACAACCACAGCGCAGCA................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CTTTTTGATCTATTGGCTGCCGTTAT.................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................ACTACACAATCACAGCGACAC................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGGCTGCCGTTATAAAAGTGCT........... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................AATATATATGACTAAATTCGCGT............................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................CAACTATTTGCACTCTGACGTC............................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTTTGACCTATTGGCTGCC......................... 19 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................AACAACCACAGCGCAGCAGCCGCAGGT....................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................AAATTCGCTTGGGTGCAAT...................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CAACAACACCAACTACAACAACTACACAA............................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAGCACCCGCAGATGAATA.................................................................................................................................................................................................. 19 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................ACAAAAGCAACAACAACACC................................................................................................................................................ 20 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................AGCGAAGCCAACATCAGCTACG................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTATGACGTCACAATTATG................................................................... 19 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................TTTTGCGGCTTTCTGATC.................................... 18 2 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................CTTCTGCTATCGGTGCTTTT......................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................CACGATGATGATGGATCTT.......................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GTTGTTGTTGTCGTTGTTCGTATTGTTGTTGGTGTCGCGTCGTCGGCGTCCACTTATATATACTGATTTAAGCGAACCCACGTTAGTTGTTTTCGTTGTTGTTGTGGTTGATGTTGTTGATGTGTTAGTGTCGCTGTGGTTGTTGTCGATGCTGTTGATAAACGTGAGACTGCAGTGTTAATACTACCGAGAAGACGATAACGCCGAAAAACTAGATAACCGACGGCAATATTTTCACGACGGGTAGTACA
**********************************************************************************************............(((.((((................................................................)).))..))).************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M028
head
 SRR060667
160_females_carcasses_total
 SRR060669
160x9_females_carcasses_total
 V053
head
......................................................................................................................................................................AGACTGCAGTGTTAATACTAC................................................................ 21 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................AAATACTACCGAGAAGACGATA................................................... 22 1 1 1.00 1 0 1 0 0
........................................................................................................................................................................................TACCGAGAAGACGATAACGCC.............................................. 21 0 1 1.00 1 0 0 1 0
................................................................................................................GTTATTGATGTGTTAGTG......................................................................................................................... 18 1 1 1.00 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:18847796-18848046 - dvi_20533 CAACA---------------ACAACAGCAACAAGCAT-----------------------------AACAACAACCACAGCGCAGCAGCCGCAGGTGAATATATATGACTAAATTCGCTTGGGTGCAATCAACAAAAGCAACAACAACA--------------C--------------------------------------------CA---AC------------TA------------------------------------------------------------C---------AACAACTACAC------AAT-CA---CAGCGACACCAACAACAGCTACG----ACAA--CTATTTGCACTCTGACG-TCACAAT------TATG------ATGGCT-CTTCT-----------------GCTAT---TGCGGCTTTTTGA---TCTATTGGCTGCCGTTATAAAAGTGCTGC------CCATCATGT------
droMoj3 scaffold_6680:12376882-12377126 + CAACA---------------ACAACAACAGC-----------------------------------------AACCATGGTGCAGCGGCTGCAGGTGAATATATATGACTAAAGTCGTGTGGGCGCGATCAACAGCA---ACAAATACACCAGCTACAACA--ACAGATACAACAGA---------------------------------------------------------------------------------------ACC-----------------AACAAG---------AACACCAACAA------CTA-TACCTCTACTGCACCAGCAGCAACAAC-------------------------------AACATCACAATTTTG------TTGT-------T-----------------GCTTTTAATACGGCTCTATGA---TCAATTAGTTGAAACTATAAAAGCGCTGC------CCATCATGT------
droGri2 scaffold_15110:19814261-19814520 - dgr_340 TGGCA---------------ACAACAACAACAA-----------TAGCAGTGGCAACA---ATAATAAGAACAACAACAGTGCAGCTGCCGCAGGTGAATATATATGACTAAATTTGCGTGGGTGCAACCAACAACAACA--------------------------------------------------------------CCAACACA---AC------------AACAA---------------CAACTGCTA-------CATC-----------------GACAAC---------AACAACAAATT------GCA-CA---CAGAAG---------------------TCATT------------------------TT------ATTGACAACGTATCTG------------TTGCCTCTGCTGCTCCTAATCAGGCTTTATCA---TCTACTGGTTGGCGTCTTTAAATTGATGC------ACATCTTGT------
droWil2 scf2_1100000004943:11857531-11857721 - CAACG---------------TCAACAACAAACA------AACACCGACACTAACAACA---------------------------AG--CGCAGA----CA----------ACTTTACTAATACGCAAACAACAACAACACCAACAA--------------------------------------------------------------------------------------------------------------------CATC-----------------AAGAAC---------AACAACAACAA------CAC-CA---CAACAACGACAACAATAAAAAC------AACATC----TA--------CATCTATGAC------GACG------ACGACGTCAGCTGCACTGCTGCCTCTTCTGCCGC---TGC--------------------------------------------------------G------
dp5 XR_group8:7907690-7907958 + TCAGA---------------ACC-----------------AGAACGAAAGTGGCAGCAGCAGTGGCAGCACCAATCAAGCAGCAACCGCCCCAGGTGAATATATATGACTAATGTCGTGTGCCTGCCACCAACAAGAACAACAGATACA--GATCCCCAAACAACAAAAACAAAAG---------CCAG------AACCACACGATTATC---------------------------------------------ACTCGCACCACCACCA-------CAAC-A--------------------CA------------------------------GCTGCCACAGT-------------------------------GCCAC------CACG------CCTCCGCCTCCT-----------------GCAAA---T---CCTCCACAC---CCTACTGGCTGCCATTGTACAAGTGCTGC------CCATCATTC------
droPer2 scaffold_40:97524-97792 + TCAGA---------------ACC-----------------AGAACGAAAGTGGCAGCAGCAGTGGCAGCACCAATCAAGCAGCAACCGCCCCAGGTGAATATATATGACTAATGTCGTGTGCCTGCCACCAACAAGAACAACAGATACA--GATCCCCAAACAACAAAAACAAAAG---------CCAG------AACCACACGATTATC---------------------------------------------ACTCGCACCACCACCA-------CAAC-A--------------------CA------------------------------GCTGCCACAGT-------------------------------GCCAC------CACG------CCTCCGCCTCCT-----------------GCAAA---T---CCTCCACAC---CCTACTGGCTGCCATTGTACAAGTGCTGC------CCATCATTC------
droAna3 scaffold_13337:10859209-10859368 + -----------------------------------------GAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTAGCCACCAGCAAGAACAACTGATTCTTGGGCCCCCAAA--CCGAGTACAACTGAT---ACAAGCCG------AACCACACGACCACC---AA------------TACTACTTCTA---------CTACTACTACTTCTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396569:757404-757559 + ACGCC-----C---------ACAGTAAACACCGCCTC--------------------AACGGTGGCGC---------AACAACAACAGGCGCACGAGAATAGTTTGGTCAACAGTCTAGTGGGTGTAATCAACAATAGCAACAATAACA--CAGCCAA-----------------------------------------------------------------------------------------------------------------------------------CAACAAC---AACAACAATAA------CAA-TA---ATAATA-----GCAACAATA-------ATAAT-------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302441:3215744-3216068 + CAGCA---------------GCAGCAGCA---------AAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCCAA--TCAAATACAACTGATGCCACAAGCTG------GACCACACGACAACTACAAACACCACGAATATCACCA---------------CAACTTCCAACAACAAAACC-----------------AACAGC---------AACAACAAAAC------CT----------ATA---------------------CCAAGTC----CGCACC-TGCCGACCACAAT------CACG------TTCACGCCTCCT-----------------GCACT---T---ACTCCCTATGTTATTATTGATTGCCGCTTTCCAATTGCTGCAAACCACCATCATTCTTCTGT
droFic1 scf7180000454113:1830987-1831261 - -----------------------------------------GAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACAACTGAT---ACAAGCTG------AACCACACGACTACA---GC------------CACAA---------------CAACTTCAAATTTCACCAAC-----------------AACAAG---------A------------------T-TA---CCAATA---------------TGAGTACCAAATC----CACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---GTTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------
droEle1 scf7180000491193:4834681-4834975 + CAGCA---------------GCAGAAGCAGCAGGGTCAAAAGAACGAAAGTGGAAACA---------------------------AGGCCGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCAATGATTCTTGGGCCCCCAAA--TCGAATACAACTGAT---ACAAGCTG------AACCACACGACTACA---AT------------CACAA---------------T---------TTC---CACC-----------------ACGACC---------AACAACAAAAT------CAA-TA---CCAAAA---------------------CCAAAAC----CACACG-AGCCGCCCACAAC------CACG------CCCACGCATCCT-----------------GCACT---T---ACTCTATAT---ATTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------
droRho1 scf7180000770443:17067-17355 + CAGCA---------------GCAACAGCAACAGGGTCAAAAGAACGAAAGTGGAAACA---------------------------AGGCCGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCACTGATTCTTGGGCTCCCAAA--TCGAATACAACTGAT---ACAAGCTG------AACCACACGACTACA---AC------------CACAA---------------C---------TTTCACCACGA--------------------CC---------AACAACAAA-------------A---CCAATA---------------------CCAAATC----CACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCCATAT---ATTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------
droBia1 scf7180000302193:5561125-5561417 - -----------------------------------------GAACGAAAGTGGAAACA---------------------------AGGCCGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCACTGATTCTTGGGCCCCCAAA--TCGAATACAACAGAT---ACAAGCTGAACCGAAACCACACGACTACA---------------------------------------------AATCTCACCACCACCA-------CAACC-AA---GAACAACTACAGCAACAACAGCTACAAAAA-AC---CCAATA---------------------CCGAATC----CACACC-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTATATGT---ATTATTGATTGCCGTTTTCCAAGTGCTGC------CCATCATTC------
droTak1 scf7180000415254:166349-166670 - CAGCAGCAACAGCAGCAAAAGCAGCAGCAGCCGGGTCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAAACGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACAACTGAT---ACAAGCTG------AACCACACGACTATA---------------------------------------------AATTTCACCACCAACAACAAGCAC-----AACCAGAACAACAACAACAACAAAAG------CTACTA-------------------------------CAAATC----CACACC-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---ATTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------
droEug1 scf7180000409711:5489973-5490321 - CAGCAACAACAGCA------GCAGCAGCAGCCGGGTCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCATTGATTCTTGGGCCCACAAA--TCGAATTCAACTGAT---ACAAGCTG------AACCACACGACTACA---GT------------CATAACTACAACTACAACTACAACTACAATTTTCACCATCTACTACAACAAC-----AAAAAG---------AACAACAACAA------CTA-TA---CCAATA---------------CCAATACGATATC----CACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---ATTATTGATTGCCGTTATTCAAGTGCTGC------CCATCATTC------
dm3 chr3L:20503828-20504134 + CAACA---------------GCAGCAGCAGCCGGGCCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTCGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACATCTGAT---ACTAGCTG------AACCACACGACTACA---GC------------CACAA---------------CAACTACCAATTCTACCACC-----------------AAGCAG---------AACAACAAATG------CTA-TA---CAAATA---------------------CCAAATC----TACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---GTTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------
droSim2 3l:20065572-20065878 + dsi_16560 CAACA---------------GCAGCAGCAGCCGGGCCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTCGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACATCTGAT---ACTAGCTG------AACCACACGACTACA---GC------------CACAA---------------CAACTACCAATTCTACCACC-----------------AAGCAG---------AACAACAAATG------CTA-TA---CAAATA---------------------CCAAATC----TACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---GTTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------
droSec2 scaffold_11:394116-394396 + -----------------------------------------GAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTCGCCAATCGCAAGAACCATTGATTCTTGGGCCCAAAAA--TCGAATACATCTGAT---ACTAGCTG------AACCACACGACTACA---GC------------CACAA---------------CAACTACCAATTCTACCACC-----------------AAGCAG---------AACAACAAATG------CTA-TA---CAAATA---------------------CCAAATC----TACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---GTTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------
droYak3 3L:20053034-20053340 - dya_833 CAACA---------------GCAGCAGCAGCCGGGCCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTCGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACATCTGAT---ACTAGCTG------AACCACACGACTACA---GC------------CACTA---------------CAACTACCAATTCTACCACC-----------------AACAAA---------AACAACAAATG------CTA-TA---CCAATA---------------------CCAAGTC----TACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTTTATAT---ATTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------
droEre2 scaffold_4784:20195852-20196158 + CAACA---------------GCAGCAGCAACCGGGCCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTCGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACATCTGAT---ACTAGCTA------AGCCACACGACTACA---GC------------CACAG---------------CAACTACCAATTGTACCACC-----------------AACAAG---------AACAGCAAATG------CTA-TA---CCAATA---------------------CCAAATC----TACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAC---ATTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
CAACA---------------ACAACAGCAACAAGCAT-----------------------------AACAACAACCACAGCGCAGCAGCCGCAGGTGAATATATATGACTAAATTCGCTTGGGTGCAATCAACAAAAGCAACAACAACA--------------C--------------------------------------------CA---AC------------TA------------------------------------------------------------C---------AACAACTACAC------AAT-CA---CAGCGACACCAACAACAGCTACG----ACAA--CTATTTGCACTCTGACG-TCACAAT------TATG------ATGGCT-CTTCT-----------------GCTAT---TGCGGCTTTTTGA---TCTATTGGCTGCCGTTATAAAAGTGCTGC------CCATCATGT------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................CACCAACAACAGCTACG----ACAA--C...............................................................................................................................................2212.002200000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGA---TCTATTGGCTGCC.....................................2112.002010000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................TTTGCACTCTGACG-TCACA.........................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................GGCT-CTTCT-----------------GCTAT---TGCGGC............................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................GACTAAATTCGCTTGGGTGC........................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGA---TCTATTGGCTGCCGTT..................................2111.001000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTTATAAAAGTGCTGC------CCATCA.........2611.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................ATATGACTAAATTCGCTTGGGTGC........................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AA--CTATTTGCACTCTGACG-TCACAA........................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AACTACAC------AAT-CA---CAGCGACACC.......................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGCCGTTATAAAAGTGCTGC------CCATC..........2811.001000000000000000000000000000000000000000000000000000000000000001
..............................................................................................................AAATTCGCTTGGGTGCAATCAACA................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TTGCACTCTGACG-TCACAAT------TATG------A......................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................AAAGCAACAACAACA--------------C--------------------------------------------CA---AC------------TA------------------------------------------------------------C---------AAC........................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ATTTGCACTCTGACG-TCAC..........................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CAACTACAC------AAT-CA---CAGCGAC..........................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
...............................AAGCAT-----------------------------AACAACAACCACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CTACAC------AAT-CA---CAGCGACACC.......................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................GCAACAACAACA--------------C--------------------------------------------CA---AC------------TA------------------------------------------------------------C---------AACAAC.....................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................AACAACCACAGCGCAGCAGCCGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CACAAT------TATG------ATGGCT-CTT.............................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
..................................................................AACAACAACCACAGCGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTTGA---TCTATTGGCTGCCGTTAT................................2611.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ACTACAC------AAT-CA---CAGCGACAC........................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGCCGTTATAAAAGTGCT.......................2211.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................CAA--CTATTTGCACTCTGACG-TC............................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................AACAACCACAGCGCAGCAGCCGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000001000000000000000000000000000000000000000000000000
..............................................................................................................AAATTCGCTTGGGTGCAAT.....................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................CAACAACA--------------C--------------------------------------------CA---AC------------TA------------------------------------------------------------C---------AACAACTACAC------AA........................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................ACAAAAGCAACAACAACA--------------C--------------------------------------------C.....................................................................................................................................................................................................................................................................................................2020.501000000000000000000000100000000000000000000000000000000000000000
droMoj3
CAACA---------------ACAACAACAGC-----------------------------------------AACCATGGTGCAGCGGCTGCAGGTGAATATATATGACTAAAGTCGTGTGGGCGCGATCAACAGCA---ACAAATACACCAGCTACAACA--ACAGATACAACAGA---------------------------------------------------------------------------------------ACC-----------------AACAAG---------AACACCAACAA------CTA-TACCTCTACTGCACCAGCAGCAACAAC-------------------------------AACATCACAATTTTG------TTGT-------T-----------------GCTTTTAATACGGCTCTATGA---TCAATTAGTTGAAACTATAAAAGCGCTGC------CCATCATGT------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................GCAGGTGAATATATATGACT........................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTCTATGA---TCAATTAGTTGAA.....................................2411.001000001
..............................................................................................................................................................................................................................................................................................................ACCAACAA------CTA-TACCTCTACTGCACCAGC....................................................................................................................................................................2911.001100000
.........................................................................................................................................................................ACAACAGA---------------------------------------------------------------------------------------ACC-----------------AACAAG---------AA.........................................................................................................................................................................................................1911.001100000
................................................................................................................................................................A--ACAGATACAACAGA---------------------------------------------------------------------------------------ACC-----------------AACAAG---------AAC........................................................................................................................................................................................................2711.001100000
..........................ACAGC-----------------------------------------AACCATGGTGCAGCGGCTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.........................................................................ACCATGGTGCAGCGGCTGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..........................ACAGC-----------------------------------------AACCATGGTGCAGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
TGGCA---------------ACAACAACAACAA-----------TAGCAGTGGCAACA---ATAATAAGAACAACAACAGTGCAGCTGCCGCAGGTGAATATATATGACTAAATTTGCGTGGGTGCAACCAACAACAACA--------------------------------------------------------------CCAACACA---AC------------AACAA---------------CAACTGCTA-------CATC-----------------GACAAC---------AACAACAAATT------GCA-CA---CAGAAG---------------------TCATT------------------------TT------ATTGACAACGTATCTG------------TTGCCTCTGCTGCTCCTAATCAGGCTTTATCA---TCTACTGGTTGGCGTCTTTAAATTGATGC------ACATCTTGT------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAGGCTTTATCA---TCTACTG...........................................2311.00110
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTCCTAATCAGGCT...........................................................1811.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................AACGTATCTG------------TTGCCTCTGCTGCT.......................................................................2411.00110
.......................................................................................................................................................................................................................................................................CATC-----------------GACAAC---------AACAACAAATT------GCA-CA---CA...............................................................................................................................................................................2811.00110
......................................................................ACAACAACAGTGCAGCTGCCGCAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
....................................................................................................................................................................................................................................ACAA---------------CAACTGCTA-------CATC-----------------GACA......................................................................................................................................................................................................................2111.00110
......................................................................................................................................................................................................................................AA---------------CAACTGCTA-------CATC-----------------GACAAC---------AACAACA....................................................................................................................................................................................................2811.00110
.......................................................................................................................................................................................................................................A---------------CAACTGCTA-------CATC-----------------GACAAC---------A..........................................................................................................................................................................................................2111.00110
.......................................................................................................................................................................................................................................................CAACTGCTA-------CATC-----------------GACAAC---------AACA.......................................................................................................................................................................................................2311.00110
..............................................................TAATAAGAACAACAACAGTGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGCTTTATCA---TCTACT............................................1911.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACTGGTTGGCGTCTTT...............................1911.00110
.....................................................................................................................CGTGGGTGCAACCAACAAC..............................................................................................................................................................................................................................................................................................................................................................................1911.00110
.............................................................................CAGTGCAGCTGCCGCAGGTGAAT..................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
................................................................................................................ATTTGCGTGGGTGCAACCA...................................................................................................................................................................................................................................................................................................................................................................................1911.00110
...................................................................................................................................................................................................................................................................................................................ATT------GCA-CA---CAGAAG---------------------TCATT------------------------TT------ATTGA............................................................................................................2611.00110
................................................................................................................................................................................................................................................................................................................................................................................................................ATCTG------------TTGCCTCTGCTGCT.......................................................................1911.00110
.....................................................................................................................................................................................................................AC------------AACAA---------------CAACTGCTA-------CATC-----------------GACAAC---------A..........................................................................................................................................................................................................2711.00110
...............................................................................................................AATTTGCGTGGGTGCAACCA...................................................................................................................................................................................................................................................................................................................................................................................2011.00110
..........................................................................................................................................................................................................CCAACACA---AC------------AACAA---------------CAACT..........................................................................................................................................................................................................................................................2011.00110
......................................................................................................................................ACAACA--------------------------------------------------------------CCAACACA---AC------------AACAA---------------CAACTG.........................................................................................................................................................................................................................................................2711.00110
..................................................................................................................................................................................................................................................................................................................AATT------GCA-CA---CAGAAG---------------------TCATT------------------------TT------.................................................................................................................2211.00110
................................................................................................................ATTTGCGTGGGTGCAACCAACA................................................................................................................................................................................................................................................................................................................................................................................2211.00101
.....................................................................................................................................................................................................................................................................................................................................CAGAAG---------------------TCATT------------------------TT------ATTGACAACGTATCT..................................................................................................2811.00110
....A---------------ACAACAACAACAA-----------TAGCAGTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
.......................................................................................................................................................................................................................................................................CATC-----------------GACAAC---------AACAACAAATT------GC........................................................................................................................................................................................2311.00110
droWil2
CAACG---------------TCAACAACAAACA------AACACCGACACTAACAACA---------------------------AG--CGCAGA----CA----------ACTTTACTAATACGCAAACAACAACAACACCAACAA--------------------------------------------------------------------------------------------------------------------CATC-----------------AAGAAC---------AACAACAACAA------CAC-CA---CAACAACGACAACAATAAAAAC------AACATC----TA--------CATCTATGAC------GACG------ACGACGTCAGCTGCACTGCTGCCTCTTCTGCCGC---TGC--------------------------------------------------------G------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................CAA--------------------------------------------------------------------------------------------------------------------CATC-----------------AAGAAC---------AACAACAA...................................................................................................................................................................................................2160.17100010
dp5
TCAGA---------------ACC-----------------AGAACGAAAGTGGCAGCAGCAGTGGCAGCACCAATCAAGCAGCAACCGCCCCAGGTGAATATATATGACTAATGTCGTGTGCCTGCCACCAACAAGAACAACAGATACA--GATCCCCAAACAACAAAAACAAAAG---------CCAG------AACCACACGATTATC---------------------------------------------ACTCGCACCACCACCA-------CAAC-A--------------------CA------------------------------GCTGCCACAGT-------------------------------GCCAC------CACG------CCTCCGCCTCCT-----------------GCAAA---T---CCTCCACAC---CCTACTGGCTGCCATTGTACAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAC---CCTACTGGCTGCCATTG.................................2311.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................A---T---CCTCCACAC---CCTACTGGCT........................................2111.0010010000000
..............................................................................................................................................................................................................................................................................A-------CAAC-A--------------------CA------------------------------GCTGCCACAGT-------------------------------GC..........................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGGCTGCCATTGTACAAGTGC........................2411.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAAGTGCTGC------CCATCATTC------2311.0010100000000
........................................AGAACGAAAGTGGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................ACACGATTATC---------------------------------------------ACTCGCACCACC...........................................................................................................................................................................................................................................2311.0010000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---T---CCTCCACAC---CCTACTGGCTGC......................................2511.0010010000000
droPer2
TCAGA---------------ACC-----------------AGAACGAAAGTGGCAGCAGCAGTGGCAGCACCAATCAAGCAGCAACCGCCCCAGGTGAATATATATGACTAATGTCGTGTGCCTGCCACCAACAAGAACAACAGATACA--GATCCCCAAACAACAAAAACAAAAG---------CCAG------AACCACACGATTATC---------------------------------------------ACTCGCACCACCACCA-------CAAC-A--------------------CA------------------------------GCTGCCACAGT-------------------------------GCCAC------CACG------CCTCCGCCTCCT-----------------GCAAA---T---CCTCCACAC---CCTACTGGCTGCCATTGTACAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................AAGCAGCAACCGCCCCAGGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
..........................................................................................................................................CAACAGATACA--GATCCCCAAA.....................................................................................................................................................................................................................................................................................................................................................2111.001001000
.............................................................................................................................................CAGATACA--GATCCCCAAAC....................................................................................................................................................................................................................................................................................................................................................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................CACG------CCTCCGCCTCCT-----------------GCAAA---T---CCTCCTT.......................................................2920.501010000
..................................................................................................ATATATATGACTAATGTCGTGTGCCT..........................................................................................................................................................................................................................................................................................................................................................................................2620.501001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCACAC---CCTACTGGCT........................................1920.501001000
.............................................................................................................TAATGTCGTGTGCCTGCCA......................................................................................................................................................................................................................................................................................................................................................................................1920.501100000
.................................................GTGGCAGCAGCAGTGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.071010000
droAna3
-----------------------------------------GAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTAGCCACCAGCAAGAACAACTGATTCTTGGGCCCCCAAA--CCGAGTACAACTGAT---ACAAGCCG------AACCACACGACCACC---AA------------TACTACTTCTA---------CTACTACTACTTCTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................GAAAGTGGAAACA---------------------------AGGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........................................................................................................................................AACAACTGATTCTTGGGCCCCC........................................................................................................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................................................................CAACTGAT---ACAAGCCG------AACCACAC...........................................................................................................................................................................................................................................................................................................2411.001010000
droBip1
ACGCC-----C---------ACAGTAAACACCGCCTC--------------------AACGGTGGCGC---------AACAACAACAGGCGCACGAGAATAGTTTGGTCAACAGTCTAGTGGGTGTAATCAACAATAGCAACAATAACA--CAGCCAA-----------------------------------------------------------------------------------------------------------------------------------CAACAAC---AACAACAATAA------CAA-TA---ATAATA-----GCAACAATA-------ATAAT-------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAGCA---------------GCAGCAGCA---------AAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCCAA--TCAAATACAACTGATGCCACAAGCTG------GACCACACGACAACTACAAACACCACGAATATCACCA---------------CAACTTCCAACAACAAAACC-----------------AACAGC---------AACAACAAAAC------CT----------ATA---------------------CCAAGTC----CGCACC-TGCCGACCACAAT------CACG------TTCACGCCTCCT-----------------GCACT---T---ACTCCCTATGTTATTATTGATTGCCGCTTTCCAATTGCTGCAAACCACCATCATTCTTCTGTSizeHit CountTotal NormTotal
No Reads
droFic1
-----------------------------------------GAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACAACTGAT---ACAAGCTG------AACCACACGACTACA---GC------------CACAA---------------CAACTTCAAATTTCACCAAC-----------------AACAAG---------A------------------T-TA---CCAATA---------------TGAGTACCAAATC----CACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---GTTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotal
No Reads
droEle1
CAGCA---------------GCAGAAGCAGCAGGGTCAAAAGAACGAAAGTGGAAACA---------------------------AGGCCGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCAATGATTCTTGGGCCCCCAAA--TCGAATACAACTGAT---ACAAGCTG------AACCACACGACTACA---AT------------CACAA---------------T---------TTC---CACC-----------------ACGACC---------AACAACAAAAT------CAA-TA---CCAAAA---------------------CCAAAAC----CACACG-AGCCGCCCACAAC------CACG------CCCACGCATCCT-----------------GCACT---T---ACTCTATAT---ATTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotal
No Reads
droRho1
CAGCA---------------GCAACAGCAACAGGGTCAAAAGAACGAAAGTGGAAACA---------------------------AGGCCGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCACTGATTCTTGGGCTCCCAAA--TCGAATACAACTGAT---ACAAGCTG------AACCACACGACTACA---AC------------CACAA---------------C---------TTTCACCACGA--------------------CC---------AACAACAAA-------------A---CCAATA---------------------CCAAATC----CACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCCATAT---ATTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotal
No Reads
droBia1
-----------------------------------------GAACGAAAGTGGAAACA---------------------------AGGCCGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCACTGATTCTTGGGCCCCCAAA--TCGAATACAACAGAT---ACAAGCTGAACCGAAACCACACGACTACA---------------------------------------------AATCTCACCACCACCA-------CAACC-AA---GAACAACTACAGCAACAACAGCTACAAAAA-AC---CCAATA---------------------CCGAATC----CACACC-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTATATGT---ATTATTGATTGCCGTTTTCCAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotal
No Reads
droTak1
CAGCAGCAACAGCAGCAAAAGCAGCAGCAGCCGGGTCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAAACGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACAACTGAT---ACAAGCTG------AACCACACGACTATA---------------------------------------------AATTTCACCACCAACAACAAGCAC-----AACCAGAACAACAACAACAACAAAAG------CTACTA-------------------------------CAAATC----CACACC-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---ATTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotal
No Reads
droEug1
CAGCAACAACAGCA------GCAGCAGCAGCCGGGTCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTTGCCAATCGCAAGAACCATTGATTCTTGGGCCCACAAA--TCGAATTCAACTGAT---ACAAGCTG------AACCACACGACTACA---GT------------CATAACTACAACTACAACTACAACTACAATTTTCACCATCTACTACAACAAC-----AAAAAG---------AACAACAACAA------CTA-TA---CCAATA---------------CCAATACGATATC----CACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---ATTATTGATTGCCGTTATTCAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotal
No Reads
dm3
CAACA---------------GCAGCAGCAGCCGGGCCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTCGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACATCTGAT---ACTAGCTG------AACCACACGACTACA---GC------------CACAA---------------CAACTACCAATTCTACCACC-----------------AAGCAG---------AACAACAAATG------CTA-TA---CAAATA---------------------CCAAATC----TACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---GTTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................AAAGTGGAAACA---------------------------AGGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................1918.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................T---ACTCTATAT---GTTATTGATTGCCGT...................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001100000
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....................GCAGCAGCAGCCGGGCCAAAAGAACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TCGCCAATCGCAAGAACCATTGATTC..................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................AC------CACG------CCCACGCCTCCT-----------------GCACT---..................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................GCCCCCAAA--TCGAATACATCTGAT---.................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................TAATGTCGTGTGGTCGCCAATCGC.................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CCT-----------------GCACT---T---ACTCTATAT---GTT...............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................TTCTTGGGCCCCCAAA--TCGAATACATC........................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................A---------------------CCAAATC----TACACG-AGCCGCCC............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TCGCCAATCGCAAGAACCATTGAT....................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................ATATGACTAATGTCGTGTGGTCGC........................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGACTAATGTCGTGTGGTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AA--TCGAATACATCTGAT---ACTAG............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AACA---------------------------AGGCAGCAGGTGAATATATATGAC.........................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGATTGCCGTTATCC..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................GCCGGGCCAAAAGAACGAAAGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTATCCAAGTGCTGC------CCATCATTC------2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGCAGCCGGGCCAAAAGAACGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TACACG-AGCCGCCCACAAC------CACG------C......................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................GTGTGGTCGCCAATCGCA................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................T---ACTAGCTG------AACCACACGAC........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AGCCGGGCCAAAAGAACGAAAGTGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AGCCGGGCCAAAAGAACGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCCT-----------------GCACT---T---ACTCTATAT---GTTAT.............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GCCGGGCCAAAAGAACGAAAGTGGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TATGACTAATGTCGTGTGGT...........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AAACA---------------------------AGGCAGCAGGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AGAACCATTGATTCTTGGG.............................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ACGAAAGTGGAAACA---------------------------AGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................ATTGATTCTTGGGCCCCCAA......................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................GCAGCAGCCGGGCCAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................ATTGATTCTTGGGCCCCCAAA--TCGAAT.............................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CAACA---------------GCAGCAGCAGCCGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................GCCGGGCCAAAAGAACGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAACA---------------GCAGCAGCAGCCGGGCCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTCGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACATCTGAT---ACTAGCTG------AACCACACGACTACA---GC------------CACAA---------------CAACTACCAATTCTACCACC-----------------AAGCAG---------AACAACAAATG------CTA-TA---CAAATA---------------------CCAAATC----TACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---GTTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................AGCCGGGCCAAAAGAACGAAAGTGGAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2916.00600000000000015000
.................................................................................................................................................................................T---ACTAGCTG------AACCACACGACTACA---GC------------...................................................................................................................................................................................................................................................................................2614.00400000002200000000
....................................................................................................................................................................................................................................................................................................................TG------CTA-TA---CAAATA---------------------CCAAATC----TACACG-AGC.................................................................................................................................2913.00300000000210000000
............................................................................................................CTAATGTCGTGTGGTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
.................................................................................................................................................................................T---ACTAGCTG------AACCACACGACTACA---.................................................................................................................................................................................................................................................................................................2412.00200000000000011000
......................................................................................................ATATGACTAATGTCGTGTGGTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................2512.00220000000000000000
...........................................................................................................................................................................................TG------AACCACACGACTACA---GC------------CACAA---------------CAAC...........................................................................................................................................................................................................................................................2812.00200000010100000000
.........................AGCAGCCGGGCCAAAAGAACGAAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000001010000000
................................................................................................................................................................A--TCGAATACATCTGAT---ACT..............................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
........................................AGAACGAAAGTGGAAACA---------------------------AGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
............................AGCCGGGCCAAAAGAACGAAAGTGGAAACA---------------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000000000001000
..........................................................................................................................................................................................................................................................................C-----------------AAGCAG---------AACAACAAATG------CT........................................................................................................................................................................................2011.00110000000000000000
.....................................................................................................................................................................................................................GC------------CACAA---------------CAACTACCAAT....................................................................................................................................................................................................................................................1811.00100001000000000000
......................................................................................................................................AGAACCATTGATTCTTGGGC............................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..............................................................................................................................................................................TGAT---ACTAGCTG------AACCACAC...........................................................................................................................................................................................................................................................................................................2011.00100000010000000000
..............................................................................................................................................................................TGAT---ACTAGCTG------AACCACACGACTAC.....................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.................................................................................................................................................................................T---ACTAGCTG------AACCACACGACTACA---G................................................................................................................................................................................................................................................................................................2511.00100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAT---GTTATTGATTGCCGTTATCCAAG...........................2811.00100000000100000000
.................................................................................................................................................................................T---ACTAGCTG------AACCACACGACTACA---GA------------...................................................................................................................................................................................................................................................................................2611.00100000000100000000
.................................................GTGGAAACA---------------------------AGGCAGCAGGTGAATATA...............................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.........................................................................................................................................ACCATTGATTCTTGGGCCCC.........................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
...........................................................................................................ACTAATGTCGTGTGGTC..........................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CT-----------------GCACT---T---ACTCTATAT---GTTATTG...........................................2411.00101000000000000000
..........................................................................................................................................................................................CTG------AACCACACGACTACA---GC------------...................................................................................................................................................................................................................................................................................2011.00101000000000000000
........................................................................................................................................................................................AGCTG------AACCACACGACTA......................................................................................................................................................................................................................................................................................................1811.00100000100000000000
..........................................................................................GCAGGTGAATATATATGACT........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATAT---GTTATTGATTGCCGTTATC...............................2511.00100000001000000000
...........................CAGCCGGGCCAAAAGAACGAAAGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCGTTATCCAAGTGCTGC------C..............2211.00100000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GTTATTGATTGCCGTTATCCAAGTGC........................2711.00100010000000000000
.................................................................................................................................................................................................................................................................................................................AAATG------CTA-TA---CAAATA---------------------CCAAA.................................................................................................................................................2111.00100000100000000000
..............................CCGGGCCAAAAGAACGAAAGTGGAAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.....................................................................................................................TGTGGTCGCCAATCGCAAGAACC..........................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.................................................................................................................GTCGTGTGGTCGCCAATCGCAAGA.............................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
.........................AGCAGCCGGGCCAAAAGAACGAAAGTGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000000000001000
.........................................................................................................................................................................................................................................................ACTACCAATTCTACCACC-----------------A.........................................................................................................................................................................................................................1911.00100001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT---GTTATTGATTGCCGTTAT................................2211.00100000000000001000
.......................................................................................................................................................................ATACATCTGAT---ACTAGCTG------AACCACACGA.........................................................................................................................................................................................................................................................................................................2911.00100000000000001000
................................GGGCCAAAAGAACGAAAGTGGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
.............................................................................................................................................................................CTGAT---ACTAGCTG------AACCACACGA.........................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.....................................................................................................................................................................GAATACATCTGAT---ACTAGCTG------...................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.......................................AAGAACGAAAGTGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................15170.06100000000100000000
droSec2
-----------------------------------------GAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTCGCCAATCGCAAGAACCATTGATTCTTGGGCCCAAAAA--TCGAATACATCTGAT---ACTAGCTG------AACCACACGACTACA---GC------------CACAA---------------CAACTACCAATTCTACCACC-----------------AAGCAG---------AACAACAAATG------CTA-TA---CAAATA---------------------CCAAATC----TACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAT---GTTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................AACCATTGATTCTTGGGCCC..........................................................................................................................................................................................................................................................................................................................................................2011.0011000
.......................................................................................................................................GAACCATTGATTCTTGGGCCCA.........................................................................................................................................................................................................................................................................................................................................................2211.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGATTGCCGTTATCCAAGTGCT.......................2711.0010010
...........................................................................................CAGGTGAATATATATGACTAATGTCG.................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
................................................................................................................TGTCGTGTGGTCGCCAATCGCA................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.....................................................................................................................................................................................ACTAGCTG------AACCACACGA.........................................................................................................................................................................................................................................................................................................1811.0010010
droYak3
CAACA---------------GCAGCAGCAGCCGGGCCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTCGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACATCTGAT---ACTAGCTG------AACCACACGACTACA---GC------------CACTA---------------CAACTACCAATTCTACCACC-----------------AACAAA---------AACAACAAATG------CTA-TA---CCAATA---------------------CCAAGTC----TACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTTTATAT---ATTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................CGCCAATCGCAAGAACCATTGAT....................................................................................................................................................................................................................................................................................................................................................................2312.00200000020000
...........................................................................................................................CGCCAATCGCAAGAACCATTGATT...................................................................................................................................................................................................................................................................................................................................................................2412.00201000010000
................................................................................................................................................................A--TCGAATACATCTGAT---ACTAGCTG------AACC...............................................................................................................................................................................................................................................................................................................2812.00220000000000
........................................................................................................ATGACTAATGTCGTGTGGTCGC........................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...............................................................................................................................................................AA--TCGAATACATCTGAT---ACTAGCTG------AACC...............................................................................................................................................................................................................................................................................................................2911.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCCGTTATCCAAGTGCTGC------CCATC..........2811.00100100000000
.........................................................................................................................................................................................................ACGACTACA---GC------------CACTA---------------CA.............................................................................................................................................................................................................................................................1811.00100010000000
.........................................................................................................TGACTAATGTCGTGTGGTCGCCAATCGC.................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTTATCCAAGTGCTGC------CCATCA.........2611.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATTGCCGTTATCCAAGTGC........................2411.00101000000000
..........................................................................................................................................................................CATCTGAT---ACTAGCTG------AACCACACGA.........................................................................................................................................................................................................................................................................................................2611.00101000000000
..............................................................................................................AATGTCGTGTGGTCGCCAATCGC.................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
................................................................................................GAATATATATGACTAATGTCGTGT..............................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..........................................................................................GCAGGTGAATATATATGACTAATGTCG.................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..........................................................................................................................TCGCCAATCGCAAGAACCATTGATT...................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
......................................................................................................ATATGACTAATGTCGTGTGGTCGCC.......................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000
..............................................................................................................AATGTCGTGTGGTCGCCAATCGCAAG..............................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCCGTTATCCAAGTGC........................2011.00100010000000
droEre2
CAACA---------------GCAGCAGCAACCGGGCCAAAAGAACGAAAGTGGAAACA---------------------------AGGCAGCAGGTGAATATATATGACTAATGTCGTGTGGTCGCCAATCGCAAGAACCATTGATTCTTGGGCCCCCAAA--TCGAATACATCTGAT---ACTAGCTA------AGCCACACGACTACA---GC------------CACAG---------------CAACTACCAATTGTACCACC-----------------AACAAG---------AACAGCAAATG------CTA-TA---CCAATA---------------------CCAAATC----TACACG-AGCCGCCCACAAC------CACG------CCCACGCCTCCT-----------------GCACT---T---ACTCTATAC---ATTATTGATTGCCGTTATCCAAGTGCTGC------CCATCATTC------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................T---ACTCTATAC---ATTATTGATTGCCGTTA.................................2711.0011000000
..................................................................................................................................................................................................................................................................TGTACCACC-----------------AACAAG---------AACAGCAAATG------C.........................................................................................................................................................................................2711.0011000000
............................................................................................................CTAATGTCGTGTGGTCGCCAATCGCAA...............................................................................................................................................................................................................................................................................................................................................................................2711.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATTGATTGCCGTTATCCAA............................2211.0010001000
......................................................................................................................................................................................................................................................................................................................................................................C----TACACG-AGCCGCCCACAAC------.................................................................................................................2011.0010000010
..........................................AACGAAAGTGGAAACA---------------------------AGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000

Generated: 05/21/2015 at 04:01 PM