ID:

dvi_20525

 Coordinate:

scaffold_13049:18836847-18836997 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.4 -8.2 -8.1

Flybase annnotation

exon [dvir_GLEANR_13642:6]; CDS [Dvir\GJ13778-cds]; intron [Dvir\GJ13778-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######################################------------
ACAACTCACTTCACTCTCATTTTGAACTTTCTTTTACTCTCTTTGGAATTGCATTCTACGTGTTAAGCACATGTGCCACGAAGTAAATCCATTGATGGGCCTAGCACAGCGCACTACGAAATTAAAATTAAAATAGTTTAACTGCATTTCAATTCATTTACTAAATTATTATTTAAAAAATTTTCGTTTTTATTTTTCTAGGTAATTTGTCGCCGGCAAAAGAGAAGAAACTCAAATGAGGCCATTTTAGC
**************************************************.........((((((.((.(((......................))).)).)))))).*********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M047
female body
 SRR060677
Argx9_ovaries_total
 SRR060672
9x160_females_carcasses_total
 SRR060675
140x9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060689
160x9_testes_total
 V116
male body		 SRR060664
9_males_carcasses_total
 SRR060667
160_females_carcasses_total
 SRR060680
 9xArg_testes_total
 M027
male body		 SRR060665
9_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 M061
embryo
 SRR060656
9x160_ovaries_total
 SRR060671
9x160_males_carcasses_total
 SRR060673
9_ovaries_total
 SRR060674
9x140_ovaries_total
 SRR060676
9xArg_ovaries_total
 V053
head
 SRR060681
Argx9_testes_total
 SRR060682
9x140_0-2h_embryos_total
 SRR060654
160x9_ovaries_total
 SRR060655
9x160_testes_total
 SRR060658
140_ovaries_total
 SRR060666
160_males_carcasses_total
 SRR060669
160x9_females_carcasses_total
 SRR060688
160_ovaries_total
 V047
embryo
 SRR060685
9xArg_0-2h_embryos_total
.........................................TTTGGAATTGCATTCTACGTG............................................................................................................................................................................................. 21 0 1 4.00 4 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCTAGGTAATTTGTCGCCGGC.................................. 21 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TCCATTGATGGGCCTAGCACA............................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAGAAACTCAAATGAGGGCAT...... 21 1 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......ACTTCACTCTCATTTTGAACT............................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AATTTGTCGCCGGCAAAAGAG........................... 21 0 1 2.00 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGAAACTCAAATGAGGGCATT..... 21 1 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CGAAGTAAATCCATTGATGGG........................................................................................................................................................ 21 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGAAGAAACTCAAATGAGGGC........ 21 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTAGGTAATTTGTCGCCG.................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AATTTGTCGCCGGCAAAA.............................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTATTTTTCTAGGTAATTTGT......................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAAGAAACTCAAATGAGGGCA....... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................CACATGTGCCGCGAAGTAAAT................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAGAAACTCAAATGAGGC......... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CTTTTACTCTCTTTGGAATTG........................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GCATTCTACGTGTTAAGCACA.................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TGATGGGCCTAGCACGGCGC........................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TTGCATTCTACGTGTTAAGCA...................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGAAGAAACTCAAATGAGGC......... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................CTTTCTTTTACTCTCTTTGG............................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................CGTGTTAGGCACATGTGCCAC............................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAGGAAACTCAAATGAGGGCAT...... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TACTCTCTTTGGAATTGCATT.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................CGAAGTAAGTCCATTGATGGG........................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................GTTAAGCACATGTGCCACGAA......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GAGAAGAAACTCAAATGAGGGCATT..... 25 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AATAGTTTAACTGCATTTAAAT.................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................CATTCTACGTGTTAGGCACA.................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAGGAAACTCAAATGAGGGC........ 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ACAACTCACTTCACTCTCAT....................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............CTCATTTTGAACTTTCTTTTA....................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATTTGTCGCCGGCAAAAGA............................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATTTGTCGCCGTCAAAAGAG........................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TATTTTTCTAGGTAATTTGTC........................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTAAGCACATGTGCCACGAAGT....................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................GGCAAAAGAGAAGAAACT................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGCTCTCTTTGGAATTGCATT.................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................CTACGTGTTGGGCACATGTGC............................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AATTTGTCGCCGGCAAAAGGG........................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AATCTGTCGCCGGCAAAAGAG........................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATTAAAATAGTTTAACTGCAT........................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTAAGCACATGTGCCACGAAG........................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CATTGATGGGCCTAGCACAGC............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................CTACGTGTTAGGCACATGTGC............................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................AAGTGGATCCATTGATGGGCC...................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTTTGTCGCCGGCAAAAGAGA.......................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................ATTTGTCGCCGGCAAAAGAGA.......................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TTTTACTCTCTTTGGAATTGC....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................GAAGTAAATCCATTGATGGGC....................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CGCCGGCAAAAGAGAAGAAACT................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CAGCGCACTACGAAATTAAAA............................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................CTACGTGTTAAGCACATGTGC............................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TGGGCCTAGCACAGCGCACTA....................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TTAACTGCATTTCAATTCATT............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................TGCTCTCTTTGGAATTGCATTC................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGTCGCCGGCAAAAGAGAAGA....................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGTCGCCGGCAAAGGAGAAG........................ 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATTGAAATAGTTTAACTGCATT....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TGGAATTGCATTCTACGTGTT........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................TGATGGGCCTAGCACAGCGCA.......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TTATTTTTCTAGGTAGTTTGT......................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CACGAGGTAAATCCATTGATG.......................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
ACAGCTCACTTCACTCTCATT...................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TGTTAAGCACATGTGCCACGA.......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................TTTTACTCTCTTTGGAGTTGC....................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................GGTAATTTGTCGCCGGCAAAA.............................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................TTTGAACTTTCTTTTACTCTC.................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CACGAAGTGAATCCATTGATG.......................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TTGGAATTGCATTCTGCGTG............................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................ATGGGCCTAGCACAGCGCACT........................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................ATTGCATTCTACGTGTTAAGC....................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TTACTCTCTTTGGAATTGCATTC................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CCTAGCACAGCGCACTACGAA................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................TTGTCGCCGGCAAAAGAGAAG........................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................GAATGGTTTAACTGCATTTC..................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTAGTCGCCGGCAAACGAGA.......................... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GGGAGAAGAAACTCAAATGAG........... 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................AACTTTCTTTTGCTCTCTTTG.............................................................................................................................................................................................................. 21 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGGCAAGGGAGAGGAAACTCA................. 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................ATGGTTTAACTGCATTTAAAT.................................................................................................. 21 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................ATTGGAATGGTTTAACTGCAT........................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................ATTCTGCGTGTTAGGCACATG.................................................................................................................................................................................. 21 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TGCGTGTTAGGCACATGTGC............................................................................................................................................................................... 20 2 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TTTGTCGCCGGCAAGGGAGAG......................... 21 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAAGTGAAGAAATTCAAGTGAG........... 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTAAAAGAGAAGAAATTCAA................ 20 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGTCGCCGGCAGGGGAGAAG........................ 20 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................GAGTTGCAGTCTACGTGAT........................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................AAGTGAAGAAATTCAAGTGAG........... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TTAAACAATATTCGTTTTTA........................................................... 20 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................TTGCGGGGAAAAGAGAAGA....................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TTGGGATCGCATTCTAGGT.............................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTTGAGTGAAGTGAGAGTAAAACTTGAAAGAAAATGAGAGAAACCTTAACGTAAGATGCACAATTCGTGTACACGGTGCTTCATTTAGGTAACTACCCGGATCGTGTCGCGTGATGCTTTAATTTTAATTTTATCAAATTGACGTAAAGTTAAGTAAATGATTTAATAATAAATTTTTTAAAAGCAAAAATAAAAAGATCCATTAAACAGCGGCCGTTTTCTCTTCTTTGAGTTTACTCCGGTAAAATCG
***********************************************************************************************************************************************.........((((((.((.(((......................))).)).)))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V116
male body		 M047
female body
 SRR060681
Argx9_testes_total
 SRR060672
9x160_females_carcasses_total
 SRR060668
160x9_males_carcasses_total
 M027
male body		 M028
head
 SRR060671
9x160_males_carcasses_total
 SRR060660
Argentina_ovaries_total
 SRR060680
 9xArg_testes_total
 SRR060655
9x160_testes_total
 SRR060676
9xArg_ovaries_total
 SRR060678
9x140_testes_total
 SRR060667
160_females_carcasses_total
 SRR060670
9_testes_total
 SRR060665
9_females_carcasses_total
 SRR060666
160_males_carcasses_total
 SRR060674
9x140_ovaries_total
 SRR060677
Argx9_ovaries_total
 SRR060679
140x9_testes_total
 SRR060688
160_ovaries_total
 SRR060659
Argentina_testes_total
 SRR060664
9_males_carcasses_total
 SRR060654
160x9_ovaries_total
 SRR060656
9x160_ovaries_total
 SRR060689
160x9_testes_total
 GSM1528803
follicle cells		 V053
head
 M061
embryo
 SRR060669
160x9_females_carcasses_total
 SRR060673
9_ovaries_total
 SRR060687
9_0-2h_embryos_total
..................................................................CGTGTACACGGTGCTTCATTT.................................................................................................................................................................... 21 0 1 6.00 6 1 0 1 1 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................GTGTCGCGTGATGCTTTAATT.............................................................................................................................. 21 0 1 4.00 4 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CCGGATCGTGTCGCGTGAT....................................................................................................................................... 19 0 1 4.00 4 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GATCGTGTCGCGTGATGCTTT.................................................................................................................................. 21 0 1 3.00 3 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........AAGTGAGAGTAAAACTTGAAA............................................................................................................................................................................................................................. 21 0 1 3.00 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TCGTGTCGCGTGATGCTTTAA................................................................................................................................ 21 0 1 3.00 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....AGTGAAGTGAGAGTAAAACTT................................................................................................................................................................................................................................. 21 0 1 3.00 3 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
TGTTGAGTGAAGTGAGAGTAAA..................................................................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TACACGGTGCTTCATTTAGGT................................................................................................................................................................ 21 0 1 2.00 2 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TCGCGTGATGCTTTAATTTTA........................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGCGGCCGTTTTCTCTTCTTT..................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................TTCGTGTACACGGTGCTTCAT...................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACAGCGGCCGTTTTCTCTTCT....................... 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CCGGATCGTGTCGCGTGGCGC..................................................................................................................................... 21 2 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CGGTGCTTCGTTTAGGTAAC............................................................................................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................ATCGTGTCGCGTGATGCTTTA................................................................................................................................. 21 0 1 2.00 2 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................CTACCCGGGTCGTGTCGCGTG......................................................................................................................................... 21 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ACCCGGATCGTGTCGCGTGAT....................................................................................................................................... 21 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GTGTACACGGTGCTTCATTTA................................................................................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CAGCGGCCGTTTTCTCTTCTT...................... 21 0 1 2.00 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ACGGTGCTTCATTTAGGTAAC............................................................................................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GAGTGAAGTGAGAGTAAAACT.................................................................................................................................................................................................................................. 21 0 1 2.00 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................TCGTGTACACGGTGCTTCATT..................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............GAGTAAAACTTGAAAGAAAAT....................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................ATCGTGTCGCGTGATGCTTT.................................................................................................................................. 20 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..TTGAGTGAAGTGAGAGTAAAA.................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGTGTCGCGTGATGCTTTGGT............................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CGGTGCTTCATTTAGGTAAGT............................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................................................................TGATCGTGTCGCGTGATGCTTT.................................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGTGTCGCGTGATGCTTTGA................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CCTTAACGTAAGATGCACAAT.......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TTACACGGTGCTTCATTTAGGT................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GTAAGATGCACAGTTCGTGTA................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CGGGTCGTGTCGCGTGGTGCT.................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CACGGTGCTTCGTTTAGGTAA.............................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........TGTGAGAGTAAAACTTGAAAGG........................................................................................................................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CGGTGCTTCATTTAGGTAACT............................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ATTGACGTAAAGTTAAGTAAA............................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AATTCGTGTACACGGTGCTTC........................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................ACCCGGATCGTGTCGCGTGGT....................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GTGTACACGGTGCTTCGTTT.................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TTGAGTTTACTCCGGTAAAGT.. 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GGATCGTGTCGCGTGGTGCT.................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................GCACGGTGCTTCATTTAGGTA............................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGCACAATTCGTGTACACGGT............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................CTCATTTAGGTAACTACCCGGATC................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..TTGAGTGAAGTGAGAGTAGAA.................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GGATCGTGTCGCGTGATGCTT................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GAGAGAAACCTTAACGTAAGG.................................................................................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ACCCGGGTCGTGTCGCGTGGT....................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CGTTTTCTCTTCTTTGAGTTT............... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TTAAACAGCGGCCGTTTTCTC........................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GATCCATTAAACAGCGGCCGT................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CACGGTGCTTCATTTAGGTAA.............................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CGGGTCGTGTCGCGTGATG...................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................AGATGCACAATTCGTGTAC.................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GTGTACACGGTGCTTCGTTTA................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TCATTTAGGTAACTACCCGGA..................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACGTAAATTTAAGTAAATGAT........................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGTGTCGCGTGATGCTTTAGT............................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ACCCGGGTCGTGTCGCGTGAT....................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GTGAAGTGAGAGTAAAACTTG................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................CGTGTACACGGTGCTTCGTTT.................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGTACACGGTGCTTCGTTTAG.................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................ACCTTAACGTAAGATGCAC............................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACGTAAAGTTAAGTAAATGGT........................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................AAGTGAGAGAAACCTTAACGTA..................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................CGTATCGTGTCGCGTGATGCT.................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................CACGGTGCTTCGTTTAGGTA............................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACGTAAAGTTAAGTAAATGAT........................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TGAGTTTACTCCCGTAAAATC. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TTCGTGTACACGGTGCTTCGT...................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTAATTTTATCAAATTGACGT......................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GCAAAAATAGAAAGATCCATT.............................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GAGAGAAACCTTAACGTAAGAT................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................AAAGATCCGTTGAACAGCGGC.................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GTGAACACGGTGCTTCATTTA................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................GTGAGAGAAACCTTAACGTAA.................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TGCTTCATTTAGGTAACTACC......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CTCGTGTACACGGTGCTTCGTT..................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................GTGTCGCGTGATGCTTTGGTT.............................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CGGCCGTTTTCTCTTCTTTGAA.................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................CCGGATCGTGTCGCGTGGTG...................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGTGTCGCGTGATGCTTTAAT............................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................GATCGTGTCGCGTGGTGCTTT.................................................................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TAACTACCCGGATCGTGTCGC............................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................GCACAATTCGTGTACACGGTG............................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........AGTGAGAGTAAAACTTGAAAG............................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GGTGCTTCGTTTAGGTAACTA........................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................TTCGTGTCGCGTGATGCTTTAA................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAACAGCGGCCGTTTTCTCTT......................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCTTTGAGTTTACTCCGGTA...... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ACGGTGCTTCGTTTAGGTAAC............................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CAGATCGTGTCGCGTGATGCT.................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TTGCACAATTCGTGTACACGGT............................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................CGGGTCGTGTCGCGTGATGCT.................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................TGCGCAATTCGTGTACACGGT............................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..............AGAGTAAAACTTGAAAGAAA......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................TGAGAGAAACCTTAACGTAAG................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGTACACGGTGCTTCATTTAG.................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................CCGGGTCGTGTCGCGTGATGC..................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......GTGAAGTGAGAGTAAAACTT................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CCCGGATCGTGTCGCGTGATG...................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GAGAAACCTTAACGTAAGGT................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............GAGAGTAAAACTTGAAAGAAA......................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................CTTGAAAGAAAGTGAGAGAAA............................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................CCCGGATCGTGTCGCGTGAT....................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........GAAGTGAGAGTAAAACTTGAA.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGTGTCGCGTGATGCTTTAATT.............................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGCGGCCGTTTTCTCTTC........................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................ACACGGTGCTTCATTTAGGTA............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TTTATCAAATTGACGTAAATT.................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................ATGAGAGAAACCTTAACGTAA.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AATTGACGTAAATTTAAGTAA............................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TACACGGTGCTTCGTTTAGGT................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TATCAAATTGACGTAAAGT.................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCCGTTTTCTCTTCTTTGAGT................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TTTTATCAAATTGACGTAAAT..................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ACGGTGCTTCGTTTAGGTAACT............................................................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGGTAACTACCCGGATCGT................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCTTTGAGTTTACTCCGGTAA..... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TTAACGTAAGATGCACAATTC........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTTCTTTGAGTTTACTCCGGTA...... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................ACCCGGGTCGTGTCGCGTGGTGCTTT.................................................................................................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TATCAAATTGACGTAAAGTTA.................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................GTCGCGTGATGCTTTAATTTT............................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCTTTGAGTTTACTCCCGTGA..... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GTAAGATGCACAATTCGTGTAC.................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TGAGTGAAGTGAGAGTAAAAC................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TCGCGTGATGCTTTGGTTTTA........................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................GCCGGATCGTGTCGCGTGA........................................................................................................................................ 19 1 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........GGAGTGAGAGTAAAACTTGGG.............................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AGTGAAGTGAGAGTGAAGCTT................................................................................................................................................................................................................................. 21 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TGTCGCGTGATGATTTTA................................................................................................................................ 18 2 7 0.43 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0
.............................................................................................................................................................................................................GGCCAGCGGCCGTTTTCTCTT......................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....AGTGGAGTGAGAGTAGAGCTT................................................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................GGGTCGTGTCGCGTGGTG...................................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................CCCGGACCGTGTCGCGCG......................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......GGGAAGTGACAGTAAAAGTT................................................................................................................................................................................................................................. 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................TGGAAAGAAAATTAGAGTAA............................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droVir3 scaffold_13049:18836797-18837047 + dvi_20525 AC-----------AACTCACT----------T-CACTCTCATTTTGA-----ACTTTCT--------------------------------------------TTTAC---TCTC-TTTGGAATTGCATT-CTACGTG----TTAAGCACATGTGCCACGAAGTAAATCCATTGATGGGCCTAGCAC---------A---GCGCACTACGAAATTAAAATTAAAATAGTTTAACTGCATTTCAATTCATTTACTAAA--TTAT-TAT-----------------------------------TTAAAAAAT-TTTCGTTTTTATTTTTCTAGGTAATTTGTCGCCGGCAAAAGAGAAGAAACTCAAATGAGGCCATT---TTAGC
droMoj3 scaffold_6680:12388345-12388598 - dmo_2467 AC-----------AACTCATT----------T-CACTCTCATTTCGA-----CTTTTC--------------------------------------------TTTTAC--TCTCC-GTG-GAATTGCATTCT----------------TCGTGTGCCACGACTTAAATCCTTTGATGGACCTGGCAC---------A---GCGCACTACGATATTAAAATTAAAATTGTTTAAAT-CTTTACAATTCAAT------------T-TTT-----AAAT--CTTTACAATTATCAT--TTTTTATTTTTTG-TTTCTTCC-CATTGTTTTTCTAGGTAATTTGTCGCCGGTGAAAGAGAAGAAAATCAAATGAAGCCATT---TTAGT
droGri2 scaffold_15110:19802725-19802969 + TT-----------AACTCACT----------TTCATTCTCATTTTAATGTGTGTTTTCTT-------------------------------------------TCCGC---TCTC-TTTGGAACTGCATTCTTGCGTG---CCTAAGCACATGTGCCACAAAGTATTTCCACTGATGGGCCTAGCAC---------A---GCGCACTACGATATTAAAATTAAAATTGTTTAACT--------------------AA--TTATTTGTTTGATTA------ATGTGACTG---------------------------T-TTTCGATTTTCTAGGTAATGTGTCGCCAACAAAAGAGAAGAAATTCGAATGAGGCCATGTT-TTAGT
droWil2 scf2_1100000004762:1482970-1483126 - --------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCACAATGTAAATCCTTTGAAGACCCAAGCAC---------TTTATCTCACTACGATATTAAAATAAAAATTGTTTAATT--------------------TG--TT-T-CAC-----CAAT--TTTCCCTTCTACCCT--CTCCTATTCTCTA-T-------------TCTCACCAGGTCAATTGTCTCCACAGAAAAAGAATTT-GTA-------------------AA
dp5 XR_group8:7918826-7919029 - ---------------------------------------------------------------------------------------------------------------TCTC-TTT-GGATTGCATTGCCATCAAAT-AAATAGCACAAGTGTCGAGAAGTAAATCCATTGATGCCCCAAGCAC---------T---GCGCACTACGACATTAAAATTAAAATAGTTTAACT--------------------CA--TT-T-TGT-----TACT--TTTCAAA-------------CGATCTAAAAAACCTTTCGTCTCCGCTCTTTTAGGTAACTTGACGCCGCAGAAAGAGAAGAAGGTGAAATAAGTT-----------A
droAna3 scaffold_13337:10870533-10870799 - -------------------------------------------------------------GCGCTTTCTCCCCC---T--CT---GTCTTTCTCT------CTCCAT--TTCTT-GTT-GGACTGCCTTGCCACAAAATCATAAAGCACAAGTGCCAAGGAGTAGATCCATTGATGCACCCACCACCACCACCACT---GCGCACTACGATATTAAAATTAAAATAGTCTAAAC--------------------AA--TTATTTGT-----TAGC--TTTTGTATCCGAAAC--TTTCGATCTAATA-TCTTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGACAAGAAAATTAAGTGAGAACTAGTT---ACA
droBip1 scf7180000396569:511041-511341 + AC-----------AAT-GATCTCTTGACTTTC-TGATCTCAATTTGA-----ATTCTCCTTGCGCTCTCTCCCC-----CTCT---GTCTTTCTCT------CT-CGACTTTCTCTGTT-GGACTGCCTTGCCACAAAATCAAAAAGCACAAGTGCCAAGGAGTAGATCCATTGATGCACCCAGCAC---------T---GCGCACTACGATATTAAAATTAAAATAGTCTAACC--------------------AA--TTATTTGT-----TAGC--TTTTGTATCCGAAAC--TTCTGATCTAATG-CCTTTTCG-TTTCACTCTTCTAGGTAAATTGTCGCCGCAAAAAGACAAGAAACTTAAGTGAGAGCTAGTT-----A
droKik1 scf7180000302441:3229888-3230166 - CT-----------AAACTTTT----------C-TGCTCTCAATTTGA-----ATTCTCCTTGCGCTCTCTCCCCCCTTTCTCTTTCGTAT--CTCTCTTTTTCTCA---------------------ATA--AACAAA----AAAAGCACAAATGCCAAGGAGTAAATCCATTGAGGCCCCCAGCAC---------A---GCGCACTACGATATTAAAATTAAAATAGTCTAAGC-C------------------ATTATTAT-TGT-----TAACTCTTTTATATACGCAACATTTTCGATCTAAAT-CTTTTTTA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAATTAAAATAAGAAC-----------
droFic1 scf7180000454113:1818327-1818610 + TC-----------AACTC--C----------T-TGTTCTCAATTTAA-----AATTTCCTTGCGTT-TCTCCCCT---TCTCT---ATCT--CTTT------TTCCAT--TTCTC-GTC-GGATTGCATTGCCACAAATT-AAAAAGCACAAGTGCCAAGGAGTAAATCCATTGATGCACCCAACAC---------C---ACGCACTACGATATTAAAATTAAAATAGTCTAACT--------------------AA--TTAT-TAT-----TAAC--TTTTATATCTGCCAC--TTTTGATCTAAAA-CGTTTCTA-TATTGTTTTTCTAGGTAAATTGTCACCGAAGAAAGAGAAGAAAGTAAAGTAAGCACTTGAT------
droEle1 scf7180000491193:4849224-4849484 - --------------------------------------------------------TCCTTGCGTT-TCTCCCTT---TCTCT---GTCT--CTTT------CTCCAC--TTCTC-GTC-GGATTGCATTGCCACAAAAT-AAATAGCACAAGTGCCAAGGAGTAAATCCATTGATGCACCCAGCCC---------T---GCGCACTACGATATTAAAATTAAAATAGTCTAACC--------------------AA--TAAT-TGT-----TAGC--TTTTATATCTGCAAC--TTTTAATCTAAAAATACTTTCA-TTTCATTTTTCTAGGTAAATTATCGCCGCAAAAAGAGAAGAAAGTAAAATAAGAACTTGTT---AAA
droRho1 scf7180000770443:32981-33082 - ------------------------------------------------------TCTCCTTGCGTT-TCTCCCCT---TCTCT---GTCT--CTTT------TTCCAT--TTATC-TTC-GGATTGCATTGCCACAAAA--ATATAGCACAAGTGCCAAGGAGTAAATCCATTGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302193:5547911-5548218 + AATGGTTAATCACACC-GTTCTCTCAACTCTC-TGCTCTCAACTTGA-----ATTCTCCTTGCCTT-TCTCCCCT--TTCTCT---GTTC--TTTT------CCCCGT--TTCTC-GTC-GGATTGCATTGCCACAA------AAAGCACAAGTGCCAAGGAGTAAATCCATTGATACACCCAGCAC---------C---ACGCACTACGATATTAAAATTAAAATAGTTTAAAC--TGAAC-------------AA--CTAT-TGT-----TAAC--TTTTATATCTGAAAC--TTTGGAACTAAAAACTTTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAAGTAAAATAAGAAGTTGAT------
droTak1 scf7180000415254:151020-151306 + AC-----------AACTCAATTCTCAAATCTT-TGCTCTCAATTTGA-----ATTCTCCTTGCGTT-TCTCCCCT---TCTCT---GTCT--CTTT------CTCCGT--TTCTC-GTC-GGATTGCATTGCCACAATA--AAAAAGCACAAGTGCCAAGGAGTAAATCCATTGATGCACCCAGCAA---------C---ACGCACTACGATATTAAAATTAAAATAGTCTAAAC--------------------AT--TTAA-TGT-----TAAC--TTTTATATCTGCCAC--TTTTGATCTAAAA-CCTTTTCG-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAAGTAAAATAAG--------------
droEug1 scf7180000409711:5477057-5477250 + ------------------------------------------------------------------------------------------------------------------------------------------------AAGCACAAGTGTCAAGGAGTAAATCCATAGAAGCACCCAATAC---------A---ACGCACTACGATATTAAAATTAAAATAGTCTAACT--------------------AATATTAT-TGT-----TAAC--TTTTATATCTGCCAA--TTTTGAACTAAAA-TTTTTTCA-TTCCACTTTTCTAGGTAAATTGTCGCCCCAAAAAGAGAAGAAAGTAAAATAAGAAGTTAT---TAAA
dm3 chr3L:20515730-20516020 - -C-----------AACTCAAT----------T-TGCTCTCAATTTAA-----ATTCTCCTTGCGTT-TCTCCCCT---TCTCT---GTCT--CTTTCTCCTTCTCCGA--TTCTC-CGC-GGATTGCATTGCCACAAA-----AAAGCACAATTGCCAAGGAGTAATTCCATTGATGCACCCAACAT---------C---ATGCACTACGATATTAAAATTAAAATAGTCTAACC--------------------AG--TTAT-TGT-----TAAC--TTTTATATCTGCTAC--TTTTGATCTACAA--TTTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAACTAAAATAAGAAGTTGAT-ATAAA
droSim2 3l:20078434-20078723 - -C-----------AACTCAAT----------T-TGCTCTCAATTTAA-----ATTCTCCTTGCGTT-TCTCCCCT----CTCT---GTCT--CTTTCTCCTTCTCCGA--TTCTC-CGC-GGATTGCATTGCCACAAA-----AAAGCACAATCGCCAAGGAGCAATTCCATTGATGCACCCAACAT---------C---ATGCACTACGATATTAAAATTAAAATAGTCTAGCC--------------------AG--TTAT-TGT-----TAAC--TTTTATATCTGCTAC--TTTTGATCTACAA--TTTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAACTAAAATAAGAAGTTGCT-ATAAA
droSec2 scaffold_11:406002-406287 - -C-----------AACTCAAT----------T-TGCTCTCAATTTAA-----ATTCTCCTTGCGTT-TCTCCCCT----CTCT---GTCT--CTTTCTCCTTCTCCGA--TTCTC-CGC-GGATTGCATTGCCACAAA-----AAAGCACAATCGCCAAGGAGCAATTCCATTGATGCACCCAACAT---------C---ATGCACTACGATATTAAAATTAAAATAGTCTAACC--------------------AG--TTAT-TGT-----TAAC--TTTTATATCTGCTAC--TTTTGATCTACAA--TTTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAACTAAAATAAGAAGTTGAT-----A
droYak3 3L:20041060-20041298 + -------------------------------------------------------------GCGTT-TCTCCCCT---TCTCT---GTCT--CTTT------CTCCAA--TTCCC-GTC-GGATTGCATTGCCACAA------AAAGCACATTTGCCAAGGAGTAATTCCATTGATGCACCCAACAT---------C---ATGCACTACGATATTAAAATTAAGATAGTCTAACC--------------------AC--TTAT-TGT-----TAAC--TTTTATATCTGCTAC--TTTTGATCTACAA-TTCATTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAAGTAAAATAAG--------------
droEre2 scaffold_4784:20207770-20208028 - -------------------------------------------------------CTCCTTGCGTT-TCTCCCCT---T--CT---GTCT--TCTT------CTCCAA--TTCTC-CTC-GGATTGCATTGCCACAAA----AAAAGCACAATTACCAAGGAGTAATTCCATTGATGCACCTAACAT---------C---ATGCACTACGATATTAAAATTAAAATAGTCTAAAC--------------------AA--TTAT-TGT-----TAAC--TTTTATATCTGCTAC--TTTTTATCTACAA-TTCTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAAGTAAAATAAGAAGTTGATATTAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droVir3
AC-----------AACTCACT----------T-CACTCTCATTTTGA-----ACTTTCT--------------------------------------------TTTAC---TCTC-TTTGGAATTGCATT-CTACGTG----TTAAGCACATGTGCCACGAAGTAAATCCATTGATGGGCCTAGCAC---------A---GCGCACTACGAAATTAAAATTAAAATAGTTTAACTGCATTTCAATTCATTTACTAAA--TTAT-TAT-----------------------------------TTAAAAAAT-TTTCGTTTTTATTTTTCTAGGTAATTTGTCGCCGGCAAAAGAGAAGAAACTCAAATGAGGCCATT---TTAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................TTTGGAATTGCATT-CTACGTG----...................................................................................................................................................................................................................................................2114.004000000000000000000000010000001000000000200000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TCTAGGTAATTTGTCGCCGGC.....................................2113.003002000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................TCCATTGATGGGCCTAGCAC---------A---.........................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
..................ACT----------T-CACTCTCATTTTGA-----ACT..........................................................................................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AATTTGTCGCCGGCAAAAGAG..............................2112.002000000000000000000000010000000000000000000000000000000000000100
..............................................................................................................................................................CGAAGTAAATCCATTGATGGG..............................................................................................................................................................................................................2112.002000000000000000002000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................CTAGGTAATTTGTCGCCG.......................................1811.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AATTTGTCGCCGGCAAAA.................................1811.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TTATTTTTCTAGGTAATTTGT............................................2111.001000000000000000000000000000000000000000000000000000000000000010
.........................................................CT--------------------------------------------TTTAC---TCTC-TTTGGAATTG...................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................GCATT-CTACGTG----TTAAGCACA..........................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................TTGCATT-CTACGTG----TTAAGCA............................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GAGAAGAAACTCAAATGAGGC............2111.001000000000000000000000000001000000000000000000000000000000000000
.....................................................CTTTCT--------------------------------------------TTTAC---TCTC-TTTGG........................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TAC---TCTC-TTTGGAATTGCATT-..............................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................G----TTAAGCACATGTGCCACGAA...............................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
AC-----------AACTCACT----------T-CACTCTCAT.......................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................................CTCATTTTGA-----ACTTTCT--------------------------------------------TTTA......................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................ATTTGTCGCCGGCAAAAGA...............................1911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................TATTTTTCTAGGTAATTTGTC...........................................2111.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................TTAAGCACATGTGCCACGAAGT.............................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GGCAAAAGAGAAGAAACT......................1811.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................ATTAAAATAGTTTAACTGCAT..................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................TTAAGCACATGTGCCACGAAG..............................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................CATTGATGGGCCTAGCAC---------A---GC.......................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................ATTTGTCGCCGGCAAAAGAGA.............................2111.001000000000000000000000001000000000000000000000000000000000000000
..........................................................T--------------------------------------------TTTAC---TCTC-TTTGGAATTGC..................................................................................................................................................................................................................................................................2111.001000000001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................GAAGTAAATCCATTGATGGGC.............................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CGCCGGCAAAAGAGAAGAAACT......................2211.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................C---------A---GCGCACTACGAAATTAAAA......................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CTACGTG----TTAAGCACATGTGC.....................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................TGGGCCTAGCAC---------A---GCGCACTA.................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TTAACTGCATTTCAATTCATT.......................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TGTCGCCGGCAAAAGAGAAGA..........................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TGGAATTGCATT-CTACGTG----TT.................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................TGATGGGCCTAGCAC---------A---GCGCA....................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TG----TTAAGCACATGTGCCACGA................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GGTAATTTGTCGCCGGCAAAA.................................2111.001000000000000000000000100000000000000000000000000000000000000000
..........................................TTTGA-----ACTTTCT--------------------------------------------TTTAC---TCTC-.............................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................ATGGGCCTAGCAC---------A---GCGCACT..................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................ATTGCATT-CTACGTG----TTAAGC.............................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
........................................................................................................TTAC---TCTC-TTTGGAATTGCATT-C.............................................................................................................................................................................................................................................................2311.001000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................CCTAGCAC---------A---GCGCACTACGAA.............................................................................................................................................................................2111.001000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTGTCGCCGGCAAAAGAGAAG...........................2111.001000001000000000000000000000000000000000000000000000000000000000
droMoj3
AC-----------AACTCATT----------T-CACTCTCATTTCGA-----CTTTTC--------------------------------------------TTTTAC--TCTCC-GTG-GAATTGCATTCT----------------TCGTGTGCCACGACTTAAATCCTTTGATGGACCTGGCAC---------A---GCGCACTACGATATTAAAATTAAAATTGTTTAAAT-CTTTACAATTCAAT------------T-TTT-----AAAT--CTTTACAATTATCAT--TTTTTATTTTTTG-TTTCTTCC-CATTGTTTTTCTAGGTAATTTGTCGCCGGTGAAAGAGAAGAAAATCAAATGAAGCCATT---TTAGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................C-GTG-GAATTGCATTCT----------------TCGTG........................................................................................................................................................................................................................................2111.001100000
..........................................................................................................................ATTGCATTCT----------------TCGTGTGCCACG.................................................................................................................................................................................................................................2211.001100000
................TCATT----------T-CACTCTCATTTCGA-----C............................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................TTGCATTCT----------------TCGTGTGCCACGA................................................................................................................................................................................................................................2211.001100000
..............................................................................................................................................................................ATGGACCTGGCAC---------A---GCGCACTG.................................................................................................................................................................................2211.001100000
...........................................TCGA-----CTTTTC--------------------------------------------TTTTAC--TCTCC-.............................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................TAATTTGTCGCCGGTGAAAGA...............................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................ATTTGTCGCCGGTGAAAGAGA.............................2111.001001000
...............................................................................................................................................................................TGGACCTGGCAC---------A---GCGCACTA.................................................................................................................................................................................2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................CCGGTGAAAGAGAAGAAAATC.....................2111.001000001
................................................................................................................TCC-GTG-GAATTGCATTCT----------------TCG..........................................................................................................................................................................................................................................2111.001100000
droGri2
TT-----------AACTCACT----------TTCATTCTCATTTTAATGTGTGTTTTCTT-------------------------------------------TCCGC---TCTC-TTTGGAACTGCATTCTTGCGTG---CCTAAGCACATGTGCCACAAAGTATTTCCACTGATGGGCCTAGCAC---------A---GCGCACTACGATATTAAAATTAAAATTGTTTAACT--------------------AA--TTATTTGTTTGATTA------ATGTGACTG---------------------------T-TTTCGATTTTCTAGGTAATGTGTCGCCAACAAAAGAGAAGAAATTCGAATGAGGCCATGTT-TTAGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................TGTGACTG---------------------------T-TTTCGATTTT.........................................................1911.00110
........................................................TCTT-------------------------------------------TCCGC---TCTC-TTTGGAACT....................................................................................................................................................................................................................................................................2211.00110
droWil2
--------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCACAATGTAAATCCTTTGAAGACCCAAGCAC---------TTTATCTCACTACGATATTAAAATAAAAATTGTTTAATT--------------------TG--TT-T-CAC-----CAAT--TTTCCCTTCTACCCT--CTCCTATTCTCTA-T-------------TCTCACCAGGTCAATTGTCTCCACAGAAAAAGAATTT-GTA-------------------AASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................GTCTCCACAGAAAAAGAATTT-GT......................2311.00100010
dp5
---------------------------------------------------------------------------------------------------------------TCTC-TTT-GGATTGCATTGCCATCAAAT-AAATAGCACAAGTGTCGAGAAGTAAATCCATTGATGCCCCAAGCAC---------T---GCGCACTACGACATTAAAATTAAAATAGTTTAACT--------------------CA--TT-T-TGT-----TACT--TTTCAAA-------------CGATCTAAAAAACCTTTCGTCTCCGCTCTTTTAGGTAACTTGACGCCGCAGAAAGAGAAGAAGGTGAAATAAGTT-----------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................TTAGGTAACTTGACGCCGCAG....................................2112.0020200000000
droAna3
-------------------------------------------------------------GCGCTTTCTCCCCC---T--CT---GTCTTTCTCT------CTCCAT--TTCTT-GTT-GGACTGCCTTGCCACAAAATCATAAAGCACAAGTGCCAAGGAGTAGATCCATTGATGCACCCACCACCACCACCACT---GCGCACTACGATATTAAAATTAAAATAGTCTAAAC--------------------AA--TTATTTGT-----TAGC--TTTTGTATCCGAAAC--TTTCGATCTAATA-TCTTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGACAAGAAAATTAAGTGAGAACTAGTT---ACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................TCTT-GTT-GGACTGCCTTGCCA...........................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................CCACCACT---GCGCACTACGATA............................................................................................................................................................................2111.001000001
...................................................................................................................................................................TAGATCCATTGATGCACCCAC.........................................................................................................................................................................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................AAAATTAAGTGAGAACTAGT.......2011.001010000
..........................................................................................................................................................................................................................................................................T-----TAGC--TTTTGTATCCGAAAC--T.........................................................................................2111.001100000
......................................................................................................................................................AAGTGCCAAGGAGTAGAT.........................................................................................................................................................................................................................1811.001000001
droBip1
AC-----------AAT-GATCTCTTGACTTTC-TGATCTCAATTTGA-----ATTCTCCTTGCGCTCTCTCCCC-----CTCT---GTCTTTCTCT------CT-CGACTTTCTCTGTT-GGACTGCCTTGCCACAAAATCAAAAAGCACAAGTGCCAAGGAGTAGATCCATTGATGCACCCAGCAC---------T---GCGCACTACGATATTAAAATTAAAATAGTCTAACC--------------------AA--TTATTTGT-----TAGC--TTTTGTATCCGAAAC--TTCTGATCTAATG-CCTTTTCG-TTTCACTCTTCTAGGTAAATTGTCGCCGCAAAAAGACAAGAAACTTAAGTGAGAGCTAGTT-----ASizeHit CountTotal NormTotal
No Reads
droKik1
CT-----------AAACTTTT----------C-TGCTCTCAATTTGA-----ATTCTCCTTGCGCTCTCTCCCCCCTTTCTCTTTCGTAT--CTCTCTTTTTCTCA---------------------ATA--AACAAA----AAAAGCACAAATGCCAAGGAGTAAATCCATTGAGGCCCCCAGCAC---------A---GCGCACTACGATATTAAAATTAAAATAGTCTAAGC-C------------------ATTATTAT-TGT-----TAACTCTTTTATATACGCAACATTTTCGATCTAAAT-CTTTTTTA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAATTAAAATAAGAAC-----------SizeHit CountTotal NormTotal
No Reads
droFic1
TC-----------AACTC--C----------T-TGTTCTCAATTTAA-----AATTTCCTTGCGTT-TCTCCCCT---TCTCT---ATCT--CTTT------TTCCAT--TTCTC-GTC-GGATTGCATTGCCACAAATT-AAAAAGCACAAGTGCCAAGGAGTAAATCCATTGATGCACCCAACAC---------C---ACGCACTACGATATTAAAATTAAAATAGTCTAACT--------------------AA--TTAT-TAT-----TAAC--TTTTATATCTGCCAC--TTTTGATCTAAAA-CGTTTCTA-TATTGTTTTTCTAGGTAAATTGTCACCGAAGAAAGAGAAGAAAGTAAAGTAAGCACTTGAT------SizeHit CountTotal NormTotal
No Reads
droEle1
--------------------------------------------------------TCCTTGCGTT-TCTCCCTT---TCTCT---GTCT--CTTT------CTCCAC--TTCTC-GTC-GGATTGCATTGCCACAAAAT-AAATAGCACAAGTGCCAAGGAGTAAATCCATTGATGCACCCAGCCC---------T---GCGCACTACGATATTAAAATTAAAATAGTCTAACC--------------------AA--TAAT-TGT-----TAGC--TTTTATATCTGCAAC--TTTTAATCTAAAAATACTTTCA-TTTCATTTTTCTAGGTAAATTATCGCCGCAAAAAGAGAAGAAAGTAAAATAAGAACTTGTT---AAASizeHit CountTotal NormTotal
No Reads
droRho1
------------------------------------------------------TCTCCTTGCGTT-TCTCCCCT---TCTCT---GTCT--CTTT------TTCCAT--TTATC-TTC-GGATTGCATTGCCACAAAA--ATATAGCACAAGTGCCAAGGAGTAAATCCATTGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AATGGTTAATCACACC-GTTCTCTCAACTCTC-TGCTCTCAACTTGA-----ATTCTCCTTGCCTT-TCTCCCCT--TTCTCT---GTTC--TTTT------CCCCGT--TTCTC-GTC-GGATTGCATTGCCACAA------AAAGCACAAGTGCCAAGGAGTAAATCCATTGATACACCCAGCAC---------C---ACGCACTACGATATTAAAATTAAAATAGTTTAAAC--TGAAC-------------AA--CTAT-TGT-----TAAC--TTTTATATCTGAAAC--TTTGGAACTAAAAACTTTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAAGTAAAATAAGAAGTTGAT------SizeHit CountTotal NormTotal
No Reads
droTak1
AC-----------AACTCAATTCTCAAATCTT-TGCTCTCAATTTGA-----ATTCTCCTTGCGTT-TCTCCCCT---TCTCT---GTCT--CTTT------CTCCGT--TTCTC-GTC-GGATTGCATTGCCACAATA--AAAAAGCACAAGTGCCAAGGAGTAAATCCATTGATGCACCCAGCAA---------C---ACGCACTACGATATTAAAATTAAAATAGTCTAAAC--------------------AT--TTAA-TGT-----TAAC--TTTTATATCTGCCAC--TTTTGATCTAAAA-CCTTTTCG-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAAGTAAAATAAG--------------SizeHit CountTotal NormTotal
No Reads
droEug1
------------------------------------------------------------------------------------------------------------------------------------------------AAGCACAAGTGTCAAGGAGTAAATCCATAGAAGCACCCAATAC---------A---ACGCACTACGATATTAAAATTAAAATAGTCTAACT--------------------AATATTAT-TGT-----TAAC--TTTTATATCTGCCAA--TTTTGAACTAAAA-TTTTTTCA-TTCCACTTTTCTAGGTAAATTGTCGCCCCAAAAAGAGAAGAAAGTAAAATAAGAAGTTAT---TAAASizeHit CountTotal NormTotal
No Reads
dm3
-C-----------AACTCAAT----------T-TGCTCTCAATTTAA-----ATTCTCCTTGCGTT-TCTCCCCT---TCTCT---GTCT--CTTTCTCCTTCTCCGA--TTCTC-CGC-GGATTGCATTGCCACAAA-----AAAGCACAATTGCCAAGGAGTAATTCCATTGATGCACCCAACAT---------C---ATGCACTACGATATTAAAATTAAAATAGTCTAACC--------------------AG--TTAT-TGT-----TAAC--TTTTATATCTGCTAC--TTTTGATCTACAA--TTTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAACTAAAATAAGAAGTTGAT-ATAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................AATTGTCGCCGCAAAAAGAGA.............................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000010000000000000000000000000000000000000000000000000000001200000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................AAATTGTCGCCGCAAAAAGAG..............................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AAAAAGAGAAGAAACTAAAAT.................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ATGCACCCAACAT---------C---ATGCACT..................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TAAATTGTCGCCGCAAAAAGA...............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GAAACTAAAATAAGAAGTTGAT-.....2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CACTTTTCTAGGTAAATTGT............................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................GCCGCAAAAAGAGAAGAAACT......................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GAAGAAACTAAAATAAGAAGT..........2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................AATTTAA-----ATTCTCCTTGCGTT-..............................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................AGTAATTCCATTGATGCACCC...........................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CTCCTTGCGTT-TCTCCCCT---TC.................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................ATTGCCACAAA-----AAAGCACAAT........................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000
............................................................TGCGTT-TCTCCCCT---TCTCT---GT.........................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................................................................................................................AAATAGTCTAACC--------------------AG--TTAT-TG.......................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CTAAAATAAGAAGTTGAT-ATA..2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................AGCACAATTGCCAAGGAGTAA...........................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
...............................................................................CTCT---GTCT--CTTTCTCCTTCT.........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................CGTT-TCTCCCCT---TCTCT---GTCT--.....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................GA--TTCTC-CGC-GGATTGCATTG..............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CGCCGCAAAAAGAGAAGAAAC.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................TCTCCGA--TTCTC-CGC-GGATTG...................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................ATCTGCTAC--TTTTGATCTAC...............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GAAGAAACTAAAATAAGAAGTT.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CTC-CGC-GGATTGCATTGCCAC..........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................AAGCACAATTGCCAAGGAGT.............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CTAAAATAAGAAGTTGAT-AT...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................AAAGCACAATTGCCAAGGAGT.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTCTC-CGC-GGATTGCATTGCCA...........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................AGAGAAGAAACTAAAATAAGA.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AGAAACTAAAATAAGAAGTTGT.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GGTAAATTGTCGCCGCAAAAAGAG..............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................CAAGGAGTAATTCCATTGATGCACCCAA.........................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TCTACAA--TTTTTCA-TTTCACTTTTCTA......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CCGCAAAAAGAGAAGAAACTA.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AAACTAAAATAAGAAGTTGAT-.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CGCCGCAAAAAGAGAAGAAA........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................ATTGTCGCCGCAAAAAGAGAAG...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................................................................................................................T-----TAAC--TTTTATATCTGCTAC--T.........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TTTTGATCTACAA--TTTTTCA-T..................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................ATTTAA-----ATTCTCCTTGCGTT-T.............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTGTCGCCGCAAAAAGAGAA............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CCAAGGAGTAATTCCATTGATG................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................ATTCTCCTTGCGTT-TCTCCCC.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TAAATTGTCGCCGCAAAAAGAG..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TGTCGCCGCAAAAAGAGAAGA..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TAAATTGTCGCCGCAAAAAGAGAA............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTGTCGCCGCAAAAAGAGAAG...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................CTCAATTTAA-----ATTCTCCTTGC..................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TATATCTGCTAC--TTTTGATCT.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TGTCGCCGCAAAAAGAGAAGAA.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................ATTGATGCACCCAACAT---------C---A........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AGAAACTAAAATAAGAAGTT.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TTAA-----ATTCTCCTTGCGTT-TCT...........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................GCGTT-TCTCCCCT---TCTCT---GTC........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................AA-----AAAGCACAATTGCCAAGGA...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................A-----ATTCTCCTTGCGTT-TCTCCC........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TGTCGCCGCAAAAAGAGAA............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................GCTAC--TTTTGATCTACAA--TTT........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................AA-----AAAGCACAATTGCCAAGG................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TCGCCGCAAAAAGAGAAGAAA........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................TTCTC-CGC-GGATTGCATTGCC............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................ACAT---------C---ATGCACTACGATATTA.........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TTTCACTTTTCTAGGTAAATT..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................AATTGTCGCCGCAAAAAGAG..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................TCAATTTAA-----ATTCTCCTTGCG.................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GAAACTAAAATAAGAAGTTGA.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................CCTTCTCCGA--TTCTC-CGC-GGA......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................TAA-----ATTCTCCTTGCGTT-TCTC..........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................A--TTCTC-CGC-GGATTGCATTGC.............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TT-TCTCCCCT---TCTCT---GTCT--CT...................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AAAGAGAAGAAACTAAAATAA...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ACTAAAATAAGAAGTTGAT-AT...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
........................................................................................................................GGATTGCATTGCCACAAA-----AA................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TCTCCTTCTCCGA--TTCTC-CGC-.........................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................ATTGTCGCCGCAAAAAGAGA.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TAAATTGTCGCCGCAAAAAGAGAAGA..........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CGCAAAAAGAGAAGAAACT......................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
-C-----------AACTCAAT----------T-TGCTCTCAATTTAA-----ATTCTCCTTGCGTT-TCTCCCCT----CTCT---GTCT--CTTTCTCCTTCTCCGA--TTCTC-CGC-GGATTGCATTGCCACAAA-----AAAGCACAATCGCCAAGGAGCAATTCCATTGATGCACCCAACAT---------C---ATGCACTACGATATTAAAATTAAAATAGTCTAGCC--------------------AG--TTAT-TGT-----TAAC--TTTTATATCTGCTAC--TTTTGATCTACAA--TTTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAACTAAAATAAGAAGTTGCT-ATAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................TTGTCGCCGCAAAAAGAGAAGAAACTAA....................2812.00200000000000020000
..........................................................................................................................................................................................................................................................................................................................................AGGTAAATTGTCGCCGCAAAAAGAGA.............................2611.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................AAGAGAAGAAACTAAAA..................1711.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................AGAAACTAAAATAAGAAGTTGC.......2211.00100000100000000000
.............................................................................................................................................................................................................................................................................................................................................................AAAGAGAAGAAACTAA....................1620.50100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................AAGAGAAGAAACTAAAT..................1760.17100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................AAAGAGAAGAAACTAT....................16200.05100000000001000000
droSec2
-C-----------AACTCAAT----------T-TGCTCTCAATTTAA-----ATTCTCCTTGCGTT-TCTCCCCT----CTCT---GTCT--CTTTCTCCTTCTCCGA--TTCTC-CGC-GGATTGCATTGCCACAAA-----AAAGCACAATCGCCAAGGAGCAATTCCATTGATGCACCCAACAT---------C---ATGCACTACGATATTAAAATTAAAATAGTCTAACC--------------------AG--TTAT-TGT-----TAAC--TTTTATATCTGCTAC--TTTTGATCTACAA--TTTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAACTAAAATAAGAAGTTGAT-----ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................AAGCACAATCGCCAAGGAGCA............................................................................................................................................................................................................................2111.0010100
..............................................................................................................................................................................................................................................................................................................................................AAATTGTCGCCGCAAAAAGAG..............................2111.0011000
droYak3
-------------------------------------------------------------GCGTT-TCTCCCCT---TCTCT---GTCT--CTTT------CTCCAA--TTCCC-GTC-GGATTGCATTGCCACAA------AAAGCACATTTGCCAAGGAGTAATTCCATTGATGCACCCAACAT---------C---ATGCACTACGATATTAAAATTAAGATAGTCTAACC--------------------AC--TTAT-TGT-----TAAC--TTTTATATCTGCTAC--TTTTGATCTACAA-TTCATTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAAGTAAAATAAG--------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................TAAATTGTCGCCGCAAAAAGAGAAGAAA........................2821.00200000000002
................................................................................................................................................................................................................................................................................................................................................ATTGTCGCCGCAAAAAGAGAAGAAAGTAA....................2921.00200000000002
.................................................................................................................................................................................................................................................................................................................................................TTGTCGCCGCAAAAAGAGAAGAAAGTAAA...................2920.50100000010000
droEre2
-------------------------------------------------------CTCCTTGCGTT-TCTCCCCT---T--CT---GTCT--TCTT------CTCCAA--TTCTC-CTC-GGATTGCATTGCCACAAA----AAAAGCACAATTACCAAGGAGTAATTCCATTGATGCACCTAACAT---------C---ATGCACTACGATATTAAAATTAAAATAGTCTAAAC--------------------AA--TTAT-TGT-----TAAC--TTTTATATCTGCTAC--TTTTTATCTACAA-TTCTTTCA-TTTCACTTTTCTAGGTAAATTGTCGCCGCAAAAAGAGAAGAAAGTAAAATAAGAAGTTGATATTAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................AGGTAAATTGTCGCCGCAAAA..................................2111.0010001000
......................................................................................................................................................................................................................................................................................................................................................GCCGCAAAAAGAGAAGAAA........................1911.0010001000

Generated: 05/21/2015 at 04:00 PM